BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052a.2
(68 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62463.1| unknown [Arabidopsis thaliana] gi|21436031|gb|AAM... 114 7e-25
gb|AAP40507.1| putative RING zinc finger protein [Arabidopsis th... 109 2e-23
gb|AAM62942.1| putative RING zinc finger protein [Arabidopsis th... 109 2e-23
ref|NP_916267.1| P0403C05.28 [Oryza sativa (japonica cultivar-gr... 107 1e-22
dbj|BAD87152.1| putative RING finger protein [Oryza sativa (japo... 107 1e-22
ref|XP_469289.1| unknown protein [Oryza sativa (japonica cultiva... 104 5e-22
gb|AAM67137.1| putative RING zinc finger protein [Arabidopsis th... 104 7e-22
ref|NP_913995.1| zinc finger (C3HC4-type RING finger) protein-li... 87 9e-17
gb|AAN05420.1| putative RING protein [Populus x canescens] 87 1e-16
gb|AAR99376.1| ring domain containing protein [Capsicum annuum] 87 1e-16
dbj|BAD81844.1| putative ring finger protein 5 [Oryza sativa (ja... 87 1e-16
emb|CAB81397.1| putative RING zinc finger protein [Arabidopsis t... 84 7e-16
gb|AAP13393.1| At4g27470 [Arabidopsis thaliana] gi|27311647|gb|A... 84 7e-16
ref|XP_392285.1| PREDICTED: hypothetical protein XP_392285 [Apis... 84 1e-15
gb|AAH33166.1| Ring finger protein 185 [Homo sapiens] gi|2327279... 83 2e-15
dbj|BAC36918.1| unnamed protein product [Mus musculus] gi|263445... 83 2e-15
ref|NP_001007841.1| hypothetical protein LOC416965 [Gallus gallu... 83 2e-15
emb|CAH89448.1| hypothetical protein [Pongo pygmaeus] 83 2e-15
ref|NP_001019442.1| hypothetical protein LOC360967 [Rattus norve... 83 2e-15
dbj|BAC28589.1| unnamed protein product [Mus musculus] gi|319817... 83 2e-15
>gb|AAM62463.1| unknown [Arabidopsis thaliana] gi|21436031|gb|AAM51593.1|
At1g19310/F18O14_14 [Arabidopsis thaliana]
gi|18394721|ref|NP_564078.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|16323202|gb|AAL15335.1| At1g19310/F18O14_14
[Arabidopsis thaliana] gi|25354183|pir||E86326 protein
F18O14.3 [imported] - Arabidopsis thaliana
gi|8778447|gb|AAF79455.1| F18O14.3 [Arabidopsis
thaliana]
Length = 226
Score = 114 bits (285), Expect = 7e-25
Identities = 47/68 (69%), Positives = 56/68 (82%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNIC DLAQDP++TLCG+LF WPCLYKWLH HS S+ CPVC A+ EED+LVPL+GRG +S
Sbjct: 23 CNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEEDRLVPLYGRGKSS 82
Query: 61 SSSSSSSI 68
+ S SI
Sbjct: 83 ADPRSKSI 90
>gb|AAP40507.1| putative RING zinc finger protein [Arabidopsis thaliana]
gi|30793869|gb|AAP40387.1| putative RING zinc finger
protein [Arabidopsis thaliana]
gi|3152606|gb|AAC17085.1| putative RING zinc finger
protein [Arabidopsis thaliana]
gi|15224062|ref|NP_179958.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|7486265|pir||T02413 probable RING zinc finger
protein [imported] - Arabidopsis thaliana
Length = 227
Score = 109 bits (273), Expect = 2e-23
Identities = 43/65 (66%), Positives = 54/65 (82%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNICF+LAQDP++TLCG+LF WPCLY+WLH HS SQ+CPVC A+ ++DKLVPL+GRG
Sbjct: 28 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDKLVPLYGRGKNQ 87
Query: 61 SSSSS 65
+ S
Sbjct: 88 TDPRS 92
>gb|AAM62942.1| putative RING zinc finger protein [Arabidopsis thaliana]
Length = 227
Score = 109 bits (273), Expect = 2e-23
Identities = 43/65 (66%), Positives = 54/65 (82%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNICF+LAQDP++TLCG+LF WPCLY+WLH HS SQ+CPVC A+ ++DKLVPL+GRG
Sbjct: 28 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDKLVPLYGRGKNQ 87
Query: 61 SSSSS 65
+ S
Sbjct: 88 TDPRS 92
>ref|NP_916267.1| P0403C05.28 [Oryza sativa (japonica cultivar-group)]
Length = 560
Score = 107 bits (266), Expect = 1e-22
Identities = 44/68 (64%), Positives = 55/68 (80%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNIC +LAQDPV+TLCG+LF WPCLY+WLH H+ S++CPVC A EE+KLVPL+GRG S
Sbjct: 363 CNICLELAQDPVVTLCGHLFCWPCLYEWLHVHAHSRECPVCKAGLEEEKLVPLYGRGKAS 422
Query: 61 SSSSSSSI 68
+ S S+
Sbjct: 423 TDPRSRSV 430
>dbj|BAD87152.1| putative RING finger protein [Oryza sativa (japonica
cultivar-group)] gi|53792435|dbj|BAD53343.1| putative
RING finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 224
Score = 107 bits (266), Expect = 1e-22
Identities = 44/68 (64%), Positives = 55/68 (80%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNIC +LAQDPV+TLCG+LF WPCLY+WLH H+ S++CPVC A EE+KLVPL+GRG S
Sbjct: 27 CNICLELAQDPVVTLCGHLFCWPCLYEWLHVHAHSRECPVCKAGLEEEKLVPLYGRGKAS 86
Query: 61 SSSSSSSI 68
+ S S+
Sbjct: 87 TDPRSRSV 94
>ref|XP_469289.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|29150403|gb|AAO72412.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 233
Score = 104 bits (260), Expect = 5e-22
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNICF+L Q+P++TLCG+LF WPC+Y+WLH H+ S +CPVC A+ EEDKLVPL+GRG
Sbjct: 24 CNICFELPQEPIVTLCGHLFCWPCIYRWLHIHAHSPECPVCKAVVEEDKLVPLYGRGKDR 83
Query: 61 SSSSSSSI 68
S +I
Sbjct: 84 VDPRSKNI 91
>gb|AAM67137.1| putative RING zinc finger protein [Arabidopsis thaliana]
gi|15222064|ref|NP_177636.1| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|5882725|gb|AAD55278.1| Similar to gb|U81598 RING
zinc finger protein (A-RZF) from Arabidopsis thaliana
and contains PF|00097 Zinc (RING) finger domain
gi|12323883|gb|AAG51909.1| putative RING zinc finger
protein; 43117-43530 [Arabidopsis thaliana]
gi|25406402|pir||G96779 probable RING zinc finger
protein F9E10.16 [imported] - Arabidopsis thaliana
Length = 137
Score = 104 bits (259), Expect = 7e-22
Identities = 42/65 (64%), Positives = 51/65 (77%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNIC +LA++P++TLCG+LF WPCLYKWLH+HS S CPVC AL +ED LVPL+G G S
Sbjct: 19 CNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDTLVPLYGMGKPS 78
Query: 61 SSSSS 65
S S
Sbjct: 79 SDPRS 83
>ref|NP_913995.1| zinc finger (C3HC4-type RING finger) protein-like [Oryza sativa
(japonica cultivar-group)] gi|51964712|ref|XP_507140.1|
PREDICTED P0577B11.136 gene product [Oryza sativa
(japonica cultivar-group)] gi|28564640|dbj|BAC57822.1|
zinc finger (C3HC4-type RING finger) protein-like [Oryza
sativa (japonica cultivar-group)]
gi|37806459|dbj|BAC99894.1| zinc finger (C3HC4-type RING
finger) protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 455
Score = 87.4 bits (215), Expect = 9e-17
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNICF+ A+DPV+T CG+LF WPC+Y+WLH HS CPVC E + P++GRG
Sbjct: 241 CNICFESAKDPVVTPCGHLFCWPCIYQWLHGHSEHSDCPVCKGEVLEVNVTPIYGRGGGE 300
Query: 61 SSSSSSSI 68
+SS + I
Sbjct: 301 ENSSRNDI 308
>gb|AAN05420.1| putative RING protein [Populus x canescens]
Length = 233
Score = 87.0 bits (214), Expect = 1e-16
Identities = 37/73 (50%), Positives = 47/73 (63%), Gaps = 6/73 (8%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS------QQCPVCNALAEEDKLVPLH 54
CNICFD A +PV+TLCG+L+ WPC+YKWLH S S QCPVC A +VPL+
Sbjct: 30 CNICFDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
Query: 55 GRGNTSSSSSSSS 67
GRG S+ + +
Sbjct: 90 GRGQGSTEAEGKT 102
>gb|AAR99376.1| ring domain containing protein [Capsicum annuum]
Length = 252
Score = 87.0 bits (214), Expect = 1e-16
Identities = 37/72 (51%), Positives = 47/72 (64%), Gaps = 8/72 (11%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQ--------QCPVCNALAEEDKLVP 52
CNIC D +PVITLCG+L+ WPC+YKW++F S+S QCPVC A E L+P
Sbjct: 41 CNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTLIP 100
Query: 53 LHGRGNTSSSSS 64
L+GRG S+ S
Sbjct: 101 LYGRGGQSTKPS 112
>dbj|BAD81844.1| putative ring finger protein 5 [Oryza sativa (japonica
cultivar-group)] gi|56202103|dbj|BAD73632.1| putative
ring finger protein 5 [Oryza sativa (japonica
cultivar-group)]
Length = 561
Score = 86.7 bits (213), Expect = 1e-16
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNT 59
CNICFD+A +PV+T CG+LF WPCLY+WL+ +S ++CPVC E + P++GRGN+
Sbjct: 235 CNICFDMASEPVVTSCGHLFCWPCLYQWLNVYSNHKECPVCKGEVTEANITPIYGRGNS 293
>emb|CAB81397.1| putative RING zinc finger protein [Arabidopsis thaliana]
gi|4972072|emb|CAB43879.1| putative RING zinc finger
protein [Arabidopsis thaliana] gi|7488309|pir||T08939
RING zinc finger protein F27G19.70 - Arabidopsis
thaliana
Length = 264
Score = 84.3 bits (207), Expect = 7e-16
Identities = 39/74 (52%), Positives = 46/74 (61%), Gaps = 7/74 (9%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS-------QQCPVCNALAEEDKLVPL 53
CNIC D A DPV+TLCG+LF WPC+YKWLH S CPVC + LVPL
Sbjct: 56 CNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLVPL 115
Query: 54 HGRGNTSSSSSSSS 67
+GRG +S SS+ S
Sbjct: 116 YGRGMSSPSSTFGS 129
>gb|AAP13393.1| At4g27470 [Arabidopsis thaliana] gi|27311647|gb|AAO00789.1|
putative RING zinc finger protein [Arabidopsis thaliana]
gi|30687607|ref|NP_194477.2| zinc finger (C3HC4-type
RING finger) family protein [Arabidopsis thaliana]
gi|66865952|gb|AAY57610.1| RING finger family protein
[Arabidopsis thaliana]
Length = 243
Score = 84.3 bits (207), Expect = 7e-16
Identities = 39/74 (52%), Positives = 46/74 (61%), Gaps = 7/74 (9%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS-------QQCPVCNALAEEDKLVPL 53
CNIC D A DPV+TLCG+LF WPC+YKWLH S CPVC + LVPL
Sbjct: 44 CNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLVPL 103
Query: 54 HGRGNTSSSSSSSS 67
+GRG +S SS+ S
Sbjct: 104 YGRGMSSPSSTFGS 117
>ref|XP_392285.1| PREDICTED: hypothetical protein XP_392285 [Apis mellifera]
Length = 182
Score = 84.0 bits (206), Expect = 1e-15
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNIC D A++ VI++CG+LF WPCL++WL Q CPVC A +DK++PL+GRG+T
Sbjct: 30 CNICLDTAKNAVISMCGHLFCWPCLHQWLETRPTRQMCPVCKAAISKDKVIPLYGRGDTR 89
Query: 61 SSSSSSSI 68
+++
Sbjct: 90 HEDPRNNV 97
>gb|AAH33166.1| Ring finger protein 185 [Homo sapiens] gi|23272798|gb|AAH35684.1|
Ring finger protein 185 [Homo sapiens]
gi|45708658|gb|AAH26040.1| Ring finger protein 185
[Homo sapiens] gi|14550508|gb|AAH09504.1| RNF185
protein [Homo sapiens] gi|45708382|gb|AAH12817.1|
RNF185 protein [Homo sapiens]
gi|55661012|ref|XP_515084.1| PREDICTED: similar to
RIKEN cDNA 1700022N24 [Pan troglodytes]
gi|47678229|emb|CAG30235.1| Em:AC005005.6 [Homo
sapiens] gi|31542783|ref|NP_689480.2| ring finger
protein 185 [Homo sapiens]
Length = 192
Score = 83.2 bits (204), Expect = 2e-15
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNT 59
CNIC D A+D VI+LCG+LF WPCL++WL Q CPVC A DK++PL+GRG+T
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97
>dbj|BAC36918.1| unnamed protein product [Mus musculus]
gi|26344570|dbj|BAC35934.1| unnamed protein product
[Mus musculus] gi|26343409|dbj|BAC35361.1| unnamed
protein product [Mus musculus]
gi|26342665|dbj|BAC34989.1| unnamed protein product
[Mus musculus] gi|15928691|gb|AAH14812.1| Rnf185
protein [Mus musculus]
Length = 192
Score = 83.2 bits (204), Expect = 2e-15
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNT 59
CNIC D A+D VI+LCG+LF WPCL++WL Q CPVC A DK++PL+GRG+T
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97
>ref|NP_001007841.1| hypothetical protein LOC416965 [Gallus gallus]
gi|53134896|emb|CAG32374.1| hypothetical protein
[Gallus gallus]
Length = 194
Score = 83.2 bits (204), Expect = 2e-15
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNT 59
CNIC D A+D VI+LCG+LF WPCL++WL Q CPVC A DK++PL+GRG+T
Sbjct: 41 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 99
>emb|CAH89448.1| hypothetical protein [Pongo pygmaeus]
Length = 192
Score = 83.2 bits (204), Expect = 2e-15
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNT 59
CNIC D A+D VI+LCG+LF WPCL++WL Q CPVC A DK++PL+GRG+T
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97
>ref|NP_001019442.1| hypothetical protein LOC360967 [Rattus norvegicus]
gi|62203106|gb|AAH92655.1| Hypothetical protein
LOC360967 [Rattus norvegicus]
Length = 192
Score = 83.2 bits (204), Expect = 2e-15
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNT 59
CNIC D A+D VI+LCG+LF WPCL++WL Q CPVC A DK++PL+GRG+T
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 97
>dbj|BAC28589.1| unnamed protein product [Mus musculus] gi|31981757|ref|NP_663330.2|
ring finger protein 185 [Mus musculus]
Length = 228
Score = 83.2 bits (204), Expect = 2e-15
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNT 59
CNIC D A+D VI+LCG+LF WPCL++WL Q CPVC A DK++PL+GRG+T
Sbjct: 75 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST 133
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.137 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,548,335
Number of Sequences: 2540612
Number of extensions: 3610455
Number of successful extensions: 17770
Number of sequences better than 10.0: 1805
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 1333
Number of HSP's that attempted gapping in prelim test: 17135
Number of HSP's gapped (non-prelim): 1872
length of query: 68
length of database: 863,360,394
effective HSP length: 44
effective length of query: 24
effective length of database: 751,573,466
effective search space: 18037763184
effective search space used: 18037763184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0052a.2