BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0051a.1
(226 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU44445.1| hypothetical protein AT2G05642 [Arabidopsis thali... 68 2e-10
gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa... 67 3e-10
ref|NP_914252.1| P0401G10.31 [Oryza sativa (japonica cultivar-gr... 66 7e-10
dbj|BAD87135.1| DNA binding protein-like [Oryza sativa (japonica... 66 7e-10
ref|NP_850486.1| expressed protein [Arabidopsis thaliana] 61 2e-08
emb|CAE04650.2| OSJNBa0061G20.6 [Oryza sativa (japonica cultivar... 54 4e-06
dbj|BAD81690.1| helicase-like protein [Oryza sativa (japonica cu... 53 6e-06
ref|XP_477680.1| replication protein-like [Oryza sativa (japonic... 52 1e-05
gb|AAP54489.1| putative replication protein [Oryza sativa (japon... 51 3e-05
ref|NP_919093.1| DNA binding protein-like [Oryza sativa (japonic... 50 4e-05
gb|AAR84278.1| putative replication protein A subunit 1 [Leishma... 49 8e-05
ref|NP_913628.1| B1008C01.13 [Oryza sativa (japonica cultivar-gr... 49 8e-05
emb|CAB91582.1| putative protein [Arabidopsis thaliana] gi|15228... 49 8e-05
gb|AAV44036.1| hypothetical protein [Oryza sativa (japonica cult... 49 8e-05
gb|AAK84867.1| replication protein A subunit 1 [Leishmania infan... 49 8e-05
ref|XP_466062.1| replication protein-like [Oryza sativa (japonic... 47 5e-04
ref|XP_466063.1| replication protein-like [Oryza sativa (japonic... 47 5e-04
ref|NP_198524.1| hypothetical protein [Arabidopsis thaliana] 46 7e-04
emb|CAG79583.1| unnamed protein product [Yarrowia lipolytica CLI... 45 0.002
emb|CAA80682.1| replication protein A 51 kilodalton subunit [Cri... 45 0.002
>gb|AAU44445.1| hypothetical protein AT2G05642 [Arabidopsis thaliana]
Length = 364
Score = 68.2 bits (165), Expect = 2e-10
Identities = 44/165 (26%), Positives = 80/165 (47%), Gaps = 15/165 (9%)
Query: 35 IYATIKKIESTNDWYYHDCECNSAAYS----------DGAQYYCEKCNKHVTPT-IRYKL 83
I A+I I++ W+Y C S + +Y CEKC+ VT T R+++
Sbjct: 103 IIASIFSIDTKVPWFYIGCNICFKKVSPYFNPETEEIEAGKYECEKCDTFVTTTSTRFRV 162
Query: 84 LLNVADDTASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKV 143
+ V D T A+F +F ++ L++K E+LE+ + + PQE++DL ++F+F +
Sbjct: 163 QVTVLDHTGEASFLLFDQDVIKLIHKSTYELLEQQVQFNRSDKIPQELLDLEGRQFVFTI 222
Query: 144 EGKNICGRWFNPAFNVLKICKDQQIISKFKTKTITKSVKRNTPPP 188
+G + F V ++ +I+ KF+ + + NT P
Sbjct: 223 QGSDSTKFSRPSIFRVYELTDKPEIVQKFQENLL----QMNTTDP 263
>gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa (japonica
cultivar-group)]
Length = 2157
Score = 67.4 bits (163), Expect = 3e-10
Identities = 40/136 (29%), Positives = 67/136 (48%), Gaps = 3/136 (2%)
Query: 9 REVQEQCTILKSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYY 67
++ E+ TI + L + T FI+ T+++I S N W+Y+ C C + G+ Y
Sbjct: 1833 QDTAEEKTIQEILALNPHKNRSTRFIVNVTVRRICSENSWWYNSCRLCYRTSKPYGSSYK 1892
Query: 68 CEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHP 127
C C+ P RYK++L D +++ATF +F R L+ K ++E + ++
Sbjct: 1893 CSSCSNIGIPDPRYKVVLIAGDASSNATFILFGRVAHRLIKKSVESLIE--DNPPDSDYI 1950
Query: 128 PQEIVDLVHKEFLFKV 143
P EI LV F + V
Sbjct: 1951 PAEIAALVDSTFTWNV 1966
>ref|NP_914252.1| P0401G10.31 [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 66.2 bits (160), Expect = 7e-10
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 9 REVQEQCTILKSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYY 67
++ E+ TI + L +R FI+ TIK I N W+Y+ C+ C + G+ Y
Sbjct: 316 QDTPEEKTIKEILKLNPHKYKRARFIVNVTIKSIHDENCWWYNSCDRCCRTSKPYGSTYR 375
Query: 68 CEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHP 127
C C P RYK++L AD+T+ A F +F R L+++ ++E+ +
Sbjct: 376 CSSCCYIGMPVPRYKVVLTTADNTSEAAFVLFGRIAHRLIHRPVESLIEE----NPPDFI 431
Query: 128 PQEIVDLVHKEFLFKV 143
P EI LV + F++ V
Sbjct: 432 PAEIQALVDQAFVWNV 447
>dbj|BAD87135.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|57899172|dbj|BAD87224.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 609
Score = 66.2 bits (160), Expect = 7e-10
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 9 REVQEQCTILKSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYY 67
++ E+ TI + L +R FI+ TIK I N W+Y+ C+ C + G+ Y
Sbjct: 264 QDTPEEKTIKEILKLNPHKYKRARFIVNVTIKSIHDENCWWYNSCDRCCRTSKPYGSTYR 323
Query: 68 CEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHP 127
C C P RYK++L AD+T+ A F +F R L+++ ++E+ +
Sbjct: 324 CSSCCYIGMPVPRYKVVLTTADNTSEAAFVLFGRIAHRLIHRPVESLIEE----NPPDFI 379
Query: 128 PQEIVDLVHKEFLFKV 143
P EI LV + F++ V
Sbjct: 380 PAEIQALVDQAFVWNV 395
>ref|NP_850486.1| expressed protein [Arabidopsis thaliana]
Length = 394
Score = 61.2 bits (147), Expect = 2e-08
Identities = 38/154 (24%), Positives = 77/154 (49%), Gaps = 10/154 (6%)
Query: 35 IYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTASA 94
+Y+ +K + + ++ + E + +Y CEKC+ VT T ++ + V D T A
Sbjct: 150 LYSYVKGYKDVSPYFNPETE-----EIEAGKYECEKCDTFVTTTST-RVQVTVLDHTGEA 203
Query: 95 TFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKVEGKNICGRWFN 154
+F +F ++ L++K E+LE+ + + PQE++DL ++F+F ++G +
Sbjct: 204 SFLLFDQDVIKLIHKSAYELLEQQVQFNRSDKIPQELLDLEGRQFVFTIQGSDSTKFSRP 263
Query: 155 PAFNVLKICKDQQIISKFKTKTITKSVKRNTPPP 188
F V ++ +I+ KF+ + + NT P
Sbjct: 264 SIFRVYELTDKPEIVQKFQENLL----QMNTTDP 293
>emb|CAE04650.2| OSJNBa0061G20.6 [Oryza sativa (japonica cultivar-group)]
gi|50923469|ref|XP_472095.1| OSJNBa0061G20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1410
Score = 53.5 bits (127), Expect = 4e-06
Identities = 36/114 (31%), Positives = 56/114 (48%), Gaps = 7/114 (6%)
Query: 33 FIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYYCE--KCNKHVTPTIRYKLLLNVAD 89
F++ TIKKI+ + W+Y C+ C A G Y C C V + R+KL L D
Sbjct: 848 FVVTVTIKKIDGS--WWYVACDRCRRTARPYGKTYRCGGGDCPATVPASPRFKLGLIAGD 905
Query: 90 DTASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKV 143
DTA F +F R ++ K +L+ + + P++I DL+ K+F + V
Sbjct: 906 DTADTKFVMFGRMAQRIIGKSVENLLD--QHPADEAYIPKQITDLLEKQFTWNV 957
>dbj|BAD81690.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 474
Score = 53.1 bits (126), Expect = 6e-06
Identities = 33/112 (29%), Positives = 55/112 (48%), Gaps = 4/112 (3%)
Query: 33 FIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDT 91
F TI K+ + W++ C C+ AA + G+ Y C VT +Y+L L D T
Sbjct: 332 FSCTVTIAKLSPSQSWWFSSCSRCHRAATAYGSSYKCSSGCSSVTAIPKYRLCLIGTDGT 391
Query: 92 ASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKV 143
SA F +F R ++ G ++ ++ G ++ P+EI +V ++F F V
Sbjct: 392 NSAEFVLFGRVAQQVV---GRPVMNLIKFQGRSDNIPKEIAAVVSQKFTFAV 440
>ref|XP_477680.1| replication protein-like [Oryza sativa (japonica cultivar-group)]
gi|22324442|dbj|BAC10358.1| replication protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 640
Score = 52.4 bits (124), Expect = 1e-05
Identities = 40/135 (29%), Positives = 60/135 (43%), Gaps = 15/135 (11%)
Query: 33 FIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDT 91
F++ IKK+ W+Y C+ C A G+ Y R+KL + D T
Sbjct: 197 FLVTVVIKKLNMEYSWWYTACDICKKTAKPYGSSYS------------RFKLSVIAGDHT 244
Query: 92 ASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKVEGKNICGR 151
A TF VF R L+ + + ++ ME ++ P+EI DL+ KEF++ V
Sbjct: 245 ADTTFIVFGRLAQRLIGRSVDALV--MENPTGKDYIPREITDLLEKEFVWNVSFTENTVS 302
Query: 152 WFNPAFNVLKICKDQ 166
AF V KI K +
Sbjct: 303 SGIVAFQVNKIIKTE 317
>gb|AAP54489.1| putative replication protein [Oryza sativa (japonica
cultivar-group)] gi|37535800|ref|NP_922202.1| putative
replication protein [Oryza sativa (japonica
cultivar-group)] gi|10140801|gb|AAG13631.1| putative
replication protein [Oryza sativa (japonica
cultivar-group)]
Length = 867
Score = 50.8 bits (120), Expect = 3e-05
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 33 FIIYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTA 92
F++ IKKI++ + W+Y C+ C++ K + R+KL L DDT
Sbjct: 200 FMVTVVIKKIDTESSWWYPACDS------------CKRTAKPYGKSYRFKLSLIAGDDTG 247
Query: 93 SATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKV 143
F +F R ++ + +++ +E P+EI DL+ KEF + V
Sbjct: 248 DTKFVLFGRTAQRIIGRPVEMLIQ--NNPAGIEFIPKEITDLLEKEFTWNV 296
>ref|NP_919093.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|24414047|dbj|BAC22296.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
gi|22831301|dbj|BAC16155.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 566
Score = 50.4 bits (119), Expect = 4e-05
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 16 TILKSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYYCEKCNKH 74
T+ + L +RT F TI+KI + + W+Y+ CE C G Y C C
Sbjct: 259 TVRELLDMNPHKNRRTRFQANVTIRKICNDSSWWYNSCEKCLRVVKPFGYTYKCTGCYNI 318
Query: 75 VTPTIRYKLLLNVADDTASATFTVFYREGCYLMNKKGNEILEK 117
RYKL + DDTA A F +F + ++ K ++E+
Sbjct: 319 AMAVPRYKLSVLAGDDTADAVFILFGKIAQRIVRKPVELLVEQ 361
>gb|AAR84278.1| putative replication protein A subunit 1 [Leishmania amazonensis]
Length = 467
Score = 49.3 bits (116), Expect = 8e-05
Identities = 25/76 (32%), Positives = 38/76 (49%), Gaps = 3/76 (3%)
Query: 48 WYYHDCECNSAAYSDGAQ---YYCEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGC 104
WY CN +GAQ + CEKC+K VTPT RY + + V D+ + A T+F G
Sbjct: 309 WYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFNEAGI 368
Query: 105 YLMNKKGNEILEKMEK 120
+ E+ + ++
Sbjct: 369 EFFGMEAAELKRRAQE 384
>ref|NP_913628.1| B1008C01.13 [Oryza sativa (japonica cultivar-group)]
Length = 780
Score = 49.3 bits (116), Expect = 8e-05
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 33 FIIYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTA 92
F++ IKKI++ + W+Y C+ C++ K + R KL L DDT
Sbjct: 200 FMVTVVIKKIDTESSWWYPACDT------------CKRTAKPYGKSYRIKLSLIAGDDTG 247
Query: 93 SATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKV 143
F +F R ++ + +++ +E P+EI DL+ KEF + V
Sbjct: 248 DTKFVLFGRTAQRIIGRPVEMLIQ--NNPAGIEFIPKEITDLLEKEFTWNV 296
>emb|CAB91582.1| putative protein [Arabidopsis thaliana]
gi|15228455|ref|NP_189797.1| hypothetical protein
[Arabidopsis thaliana] gi|11288415|pir||T48966
hypothetical protein F4M19.70 - Arabidopsis thaliana
Length = 448
Score = 49.3 bits (116), Expect = 8e-05
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 35 IYATIKKIESTNDWYYHDCE-CNSAAYSDGA------------QYYCEKCNKHVTPTI-R 80
+ TI I++ WYY C+ CN A +++C+ C VT I R
Sbjct: 212 VLCTIYAIDTDWAWYYISCKTCNKKVNHIHAGVHGVNNKGKKPRFWCDTCKTVVTNVIPR 271
Query: 81 YKLLLNVADDTASATFTVFYREGCYLMNKKGNEILE-KMEKIGSMEHPPQEIVDLVHKEF 139
Y L NV D+T A F +F L + +L+ ++++ E+ P+ + +L+ K F
Sbjct: 272 YMLYANVMDNTGEAKFLLFDSICSELTGESATSVLDGSLDEVVDPENLPEPVKNLIGKTF 331
Query: 140 LFKV--------EGKNICGRW 152
LF V +GK + W
Sbjct: 332 LFLVWVEKEHISDGKEVYKVW 352
>gb|AAV44036.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 820
Score = 49.3 bits (116), Expect = 8e-05
Identities = 33/119 (27%), Positives = 56/119 (46%), Gaps = 4/119 (3%)
Query: 28 QQRTIFIIYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCEKCNKH-VTPTIRYKLLLN 86
Q+ I + A I++I+S N WY +C + Y C C K V P RY + L
Sbjct: 262 QKEFICTVKAKIEEIKSRNWWYMSCDKCFCGTRKESNVYICNSCGKEAVNPKPRYVINLE 321
Query: 87 VADDTASATFTVFYREGCYLMNKKG-NEILEKMEKIGSMEHPPQEIVDLVHKEFLFKVE 144
++D T T T+F E + K + +LE E+ G ++ P I + + +F+++
Sbjct: 322 ISDHTTRTTCTIFNEEAERIFGHKSVSTMLE--EQNGQIDMIPDTIRQICGRILIFRLK 378
>gb|AAK84867.1| replication protein A subunit 1 [Leishmania infantum]
Length = 467
Score = 49.3 bits (116), Expect = 8e-05
Identities = 25/76 (32%), Positives = 38/76 (49%), Gaps = 3/76 (3%)
Query: 48 WYYHDCECNSAAYSDGAQ---YYCEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGC 104
WY CN +GAQ + CEKC+K VTPT RY + + V D+ + A T+F G
Sbjct: 309 WYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFNEAGI 368
Query: 105 YLMNKKGNEILEKMEK 120
+ E+ + ++
Sbjct: 369 EFFGMEAAELKRRAQE 384
>ref|XP_466062.1| replication protein-like [Oryza sativa (japonica cultivar-group)]
gi|49388309|dbj|BAD25421.1| replication protein-like
[Oryza sativa (japonica cultivar-group)]
gi|49388477|dbj|BAD25604.1| replication protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 197
Score = 46.6 bits (109), Expect = 5e-04
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 1/91 (1%)
Query: 10 EVQEQCTILKSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYYC 68
EV E T+ + L ++ F + T+++I + W+Y C+ C A G+ Y C
Sbjct: 106 EVAENKTVRELLEINPHKCKKVRFQAHVTVRRICNDKCWWYGSCQRCFKVAKPYGSTYKC 165
Query: 69 EKCNKHVTPTIRYKLLLNVADDTASATFTVF 99
C+ RY++++ DD+ A F +F
Sbjct: 166 TSCSNIAVAVPRYRIVVIAGDDSDDAMFVLF 196
>ref|XP_466063.1| replication protein-like [Oryza sativa (japonica cultivar-group)]
gi|49388310|dbj|BAD25422.1| replication protein-like
[Oryza sativa (japonica cultivar-group)]
gi|49388478|dbj|BAD25605.1| replication protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 176
Score = 46.6 bits (109), Expect = 5e-04
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 1/91 (1%)
Query: 10 EVQEQCTILKSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCE-CNSAAYSDGAQYYC 68
EV E T+ + L ++ F + T+++I + W+Y C+ C A G+ Y C
Sbjct: 85 EVAENKTVRELLEINPHKCKKVRFQAHVTVRRICNDKCWWYGSCQRCFKVAKPYGSTYKC 144
Query: 69 EKCNKHVTPTIRYKLLLNVADDTASATFTVF 99
C+ RY++++ DD+ A F +F
Sbjct: 145 TSCSNIAVAVPRYRIVVIAGDDSDDAMFVLF 175
>ref|NP_198524.1| hypothetical protein [Arabidopsis thaliana]
Length = 566
Score = 46.2 bits (108), Expect = 7e-04
Identities = 39/138 (28%), Positives = 58/138 (41%), Gaps = 27/138 (19%)
Query: 35 IYATIKKIESTNDWYYHDC-ECN------SAAYSDGA--------QYYCEKCNKHVTPT- 78
I +I I++ W+Y C +CN + S G +++C+KC + +T
Sbjct: 290 ILGSIFAIDTDWGWFYFGCPKCNRKTELVKESTSTGKMVKTPMKPKFWCDKCQESITNVE 349
Query: 79 IRYKLLLNVADDTASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHK- 137
RYKL + V D TA VF L+ K E+++ G E P I D++
Sbjct: 350 ARYKLHVRVMDQTAEIKLMVFENNATKLIGKSSEELVD-----GQYEEDPTIISDVITNL 404
Query: 138 -----EFLFKVEGKNICG 150
FL VE NI G
Sbjct: 405 CGKTFHFLVSVEKANIYG 422
>emb|CAG79583.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50553160|ref|XP_503990.1| hypothetical protein
[Yarrowia lipolytica]
Length = 589
Score = 45.1 bits (105), Expect = 0.002
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 45 TNDWYYHDCE---CNSAAYSDGAQYYCEKCNKHV-TPTIRYKLLLNVADDTASATFTVFY 100
T ++ Y C+ CN G ++ CEKC K++ P RY L +NV D T S T F
Sbjct: 448 TGNFAYPACQTPDCNKKVVEHGDEWRCEKCEKNMDKPLYRYILSINVGDATGSMWLTAFN 507
Query: 101 REGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKVEGK 146
+M +++ E G E Q + + K++ + K
Sbjct: 508 EPAEVIMGMTADQLTEIQTSQGDDEF-EQAVQKVTGKQYTLRCRSK 552
>emb|CAA80682.1| replication protein A 51 kilodalton subunit [Crithidia fasciculata]
gi|2833320|sp|Q23696|RFA1_CRIFA Replication factor A 51
kDa subunit (RP-A) (RF-A) (Replication factor-A protein
1) (Single-stranded DNA-binding protein P51 subunit)
Length = 467
Score = 44.7 bits (104), Expect = 0.002
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 3/76 (3%)
Query: 48 WYYHDCECNSAAYSDGAQ---YYCEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGC 104
WY CN +GAQ + CEKC+ V PT RY + + V D+ + T+F G
Sbjct: 309 WYDACPTCNKKVTEEGAQGDRFRCEKCDATVVPTQRYLVSIQVTDNVSQVWLTLFNEAGV 368
Query: 105 YLMNKKGNEILEKMEK 120
+ +E+ + ++
Sbjct: 369 EFFGMEASELKRRAQE 384
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,542,023
Number of Sequences: 2540612
Number of extensions: 15509973
Number of successful extensions: 43488
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 43426
Number of HSP's gapped (non-prelim): 89
length of query: 226
length of database: 863,360,394
effective HSP length: 123
effective length of query: 103
effective length of database: 550,865,118
effective search space: 56739107154
effective search space used: 56739107154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0051a.1