BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0050.14
(77 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP80641.1| 26S proteasome ATPase subunit [Triticum aestivum] 106 2e-22
gb|AAP78936.1| At5g19990 [Arabidopsis thaliana] gi|17473854|gb|A... 106 2e-22
ref|XP_507461.1| PREDICTED P0544H11.38 gene product [Oryza sativ... 106 2e-22
gb|AAM65046.1| 26S proteasome AAA-ATPase subunit RPT6a-like prot... 106 2e-22
ref|XP_649684.1| proteasome regulatory subunit, putative [Entamo... 106 2e-22
gb|AAF27916.1| 26S proteasome regulatory subunit 8 [Pinus taeda] 106 2e-22
gb|AAF22526.1| 26S proteasome AAA-ATPase subunit RPT6a [Arabidop... 106 2e-22
ref|XP_629632.1| hypothetical protein DDB0216230 [Dictyostelium ... 106 2e-22
dbj|BAD32833.1| putative 26S proteasome regulatory particle trip... 106 2e-22
gb|AAG42150.1| 26S proteasome RPT6a subunit [Dactylis glomerata] 106 2e-22
sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 (TAT-bind... 106 2e-22
emb|CAD98640.1| 26s protease regulatory subunit 8, probable [Cry... 105 3e-22
ref|XP_664935.1| hypothetical protein Chro.60119 [Cryptosporidiu... 105 3e-22
ref|NP_112411.1| for proteasomal ATPase (SUG1) [Rattus norvegicu... 104 5e-22
dbj|BAA07919.1| 26S proteasome subunit p45 [Homo sapiens] gi|109... 104 5e-22
gb|AAH30840.1| Psmc5 protein [Mus musculus] 104 5e-22
ref|XP_537597.1| PREDICTED: similar to proteasomal ATPase (SUG1)... 104 5e-22
ref|NP_989358.1| hypothetical protein LOC394988 [Xenopus tropica... 104 5e-22
gb|AAV38531.1| proteasome (prosome, macropain) 26S subunit, ATPa... 104 5e-22
dbj|BAD92273.1| proteasome 26S ATPase subunit 5 variant [Homo sa... 104 5e-22
>gb|AAP80641.1| 26S proteasome ATPase subunit [Triticum aestivum]
Length = 287
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 135 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 190
>gb|AAP78936.1| At5g19990 [Arabidopsis thaliana] gi|17473854|gb|AAL38350.1| unknown
protein [Arabidopsis thaliana]
gi|18420092|ref|NP_568389.1| 26S proteasome AAA-ATPase
subunit (RPT6a) [Arabidopsis thaliana]
gi|13537115|dbj|BAB40755.1| AtSUG1 [Arabidopsis
thaliana]
Length = 419
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 173 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228
>ref|XP_507461.1| PREDICTED P0544H11.38 gene product [Oryza sativa (japonica
cultivar-group)] gi|50906145|ref|XP_464561.1| 26S
proteasome regulatory particle triple-A ATPase subunit6
[Oryza sativa (japonica cultivar-group)]
gi|51963948|ref|XP_506757.1| PREDICTED P0544H11.38 gene
product [Oryza sativa (japonica cultivar-group)]
gi|51536269|dbj|BAD38437.1| 26S proteasome regulatory
particle triple-A ATPase subunit6 [Oryza sativa
(japonica cultivar-group)] gi|46390529|dbj|BAD16017.1|
26S proteasome regulatory particle triple-A ATPase
subunit6 [Oryza sativa (japonica cultivar-group)]
gi|11991116|dbj|BAB19880.1| 26S proteasome ATPase
subunit Rpt6 [Oryza sativa] gi|11094194|dbj|BAB17626.1|
26S proteasome regulatory particle triple-A ATPase
subunit6 [Oryza sativa (japonica cultivar-group)]
Length = 424
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 178 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 233
>gb|AAM65046.1| 26S proteasome AAA-ATPase subunit RPT6a-like protein [Arabidopsis
thaliana] gi|19310807|gb|AAL85134.1| putative 26S
proteasome AAA-ATPase subunit RPT6a [Arabidopsis
thaliana] gi|14532682|gb|AAK64142.1| putative 26S
proteasome AAA-ATPase subunit RPT6a [Arabidopsis
thaliana] gi|15241241|ref|NP_197500.1| 26S proteasome
AAA-ATPase subunit, putative [Arabidopsis thaliana]
Length = 419
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 173 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228
>ref|XP_649684.1| proteasome regulatory subunit, putative [Entamoeba histolytica
HM-1:IMSS] gi|67465840|ref|XP_649078.1| 26S protease
regulatory subunit 8, putative [Entamoeba histolytica
HM-1:IMSS] gi|56466175|gb|EAL44301.1| proteasome
regulatory subunit, putative [Entamoeba histolytica
HM-1:IMSS] gi|56465447|gb|EAL43703.1| 26S protease
regulatory subunit 8, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 398
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 153 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 208
>gb|AAF27916.1| 26S proteasome regulatory subunit 8 [Pinus taeda]
Length = 433
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 187 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 242
>gb|AAF22526.1| 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis thaliana]
Length = 405
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 159 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 214
>ref|XP_629632.1| hypothetical protein DDB0216230 [Dictyostelium discoideum]
gi|60462974|gb|EAL61170.1| hypothetical protein
DDB0216230 [Dictyostelium discoideum]
Length = 403
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 157 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 212
>dbj|BAD32833.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit6 [Oryza sativa (japonica cultivar-group)]
gi|50725483|dbj|BAD32954.1| putative 26S proteasome
regulatory particle triple-A ATPase subunit6 [Oryza
sativa (japonica cultivar-group)]
Length = 423
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 177 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 232
>gb|AAG42150.1| 26S proteasome RPT6a subunit [Dactylis glomerata]
Length = 452
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 206 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 261
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 (TAT-binding protein homolog 10)
gi|422297|pir||JN0610 probable transcription factor
DdTBP10 - slime mold (Dictyostelium discoideum)
(fragment) gi|290057|gb|AAA33254.1| HIV1 TAT-binding
protein
Length = 389
Score = 106 bits (264), Expect = 2e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 143 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 198
>emb|CAD98640.1| 26s protease regulatory subunit 8, probable [Cryptosporidium
parvum]
Length = 393
Score = 105 bits (262), Expect = 3e-22
Identities = 50/56 (89%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPE+FES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 149 IKEVIELPIKHPEIFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 204
>ref|XP_664935.1| hypothetical protein Chro.60119 [Cryptosporidium hominis]
gi|54655117|gb|EAL34705.1| hypothetical protein
Chro.60119 [Cryptosporidium hominis]
Length = 172
Score = 105 bits (262), Expect = 3e-22
Identities = 50/56 (89%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPE+FES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 24 IKEVIELPIKHPEIFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 79
>ref|NP_112411.1| for proteasomal ATPase (SUG1) [Rattus norvegicus]
gi|47522792|ref|NP_999148.1| Tat-binding protein 10 [Sus
scrofa] gi|7110703|ref|NP_032976.1| protease (prosome,
macropain) 26S subunit, ATPase 5 [Mus musculus]
gi|37231718|gb|AAH58462.1| For proteasomal ATPase (SUG1)
[Rattus norvegicus] gi|3193258|gb|AAC19266.1| proteasome
subunit SUG1 [Bos taurus] gi|32425744|gb|AAH02367.3|
Proteasome 26S ATPase subunit 5 [Homo sapiens]
gi|12804959|gb|AAH01932.1| Proteasome 26S ATPase subunit
5 [Homo sapiens] gi|49065819|sp|P62195|PRS8_HUMAN 26S
protease regulatory subunit 8 (Proteasome subunit p45)
(p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
hormone receptor interacting protein 1) (TRIP1)
gi|49065820|sp|P62196|PRS8_MOUSE 26S protease regulatory
subunit 8 (Proteasome subunit p45) (p45/SUG) (Proteasome
26S subunit ATPase 5) (mSUG1)
gi|49065782|sp|P62198|PRS8_RAT 26S protease regulatory
subunit 8 (Proteasome subunit p45) (p45/SUG) (Proteasome
26S subunit ATPase 5) (Thyroid hormone receptor
interacting protein 1) (TRIP1)
gi|24497435|ref|NP_002796.4| proteasome 26S ATPase
subunit 5 [Homo sapiens] gi|1165125|emb|CAA90961.1|
mSUG1 protein [Mus musculus] gi|1262433|emb|CAA61863.1|
26S protease subunit [Sus scrofa]
gi|49065781|sp|P62197|PRS8_PIG 26S protease regulatory
subunit 8 (Proteasome subunit p45) (p45/SUG) (Proteasome
26S subunit ATPase 5) (TAT-binding protein homolog 10)
(TBP10) gi|1395177|dbj|BAA11938.1| proteasomal ATPase
(rat SUG1) [Rattus norvegicus]
gi|2564003|dbj|BAA22933.1| proteasome p45/SUG [Rattus
norvegicus] gi|27806101|ref|NP_776866.1| proteasome
(prosome, macropain) 26S subunit, ATPase, 5 [Bos taurus]
Length = 406
Score = 104 bits (260), Expect = 5e-22
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+P+KHPELFE+ GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 161 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 216
>dbj|BAA07919.1| 26S proteasome subunit p45 [Homo sapiens] gi|1096205|prf||2111282A
26S proteasome
Length = 406
Score = 104 bits (260), Expect = 5e-22
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+P+KHPELFE+ GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 161 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 216
>gb|AAH30840.1| Psmc5 protein [Mus musculus]
Length = 348
Score = 104 bits (260), Expect = 5e-22
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+P+KHPELFE+ GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 161 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 216
>ref|XP_537597.1| PREDICTED: similar to proteasomal ATPase (SUG1) [Canis familiaris]
Length = 423
Score = 104 bits (260), Expect = 5e-22
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+P+KHPELFE+ GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 178 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 233
>ref|NP_989358.1| hypothetical protein LOC394988 [Xenopus tropicalis]
gi|39850038|gb|AAH64153.1| Hypothetical protein MGC75584
[Xenopus tropicalis]
Length = 414
Score = 104 bits (260), Expect = 5e-22
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+P+KHPELFE+ GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 169 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 224
>gb|AAV38531.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
construct]
Length = 407
Score = 104 bits (260), Expect = 5e-22
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+P+KHPELFE+ GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 161 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 216
>dbj|BAD92273.1| proteasome 26S ATPase subunit 5 variant [Homo sapiens]
Length = 345
Score = 104 bits (260), Expect = 5e-22
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+P+KHPELFE+ GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 157 IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 212
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,933,221
Number of Sequences: 2540612
Number of extensions: 4888885
Number of successful extensions: 18416
Number of sequences better than 10.0: 2787
Number of HSP's better than 10.0 without gapping: 2722
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 15275
Number of HSP's gapped (non-prelim): 3143
length of query: 77
length of database: 863,360,394
effective HSP length: 53
effective length of query: 24
effective length of database: 728,707,958
effective search space: 17488990992
effective search space used: 17488990992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0050.14