BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0048.5
         (117 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM64547.1| unknown [Arabidopsis thaliana]                          80  1e-14
gb|AAM98314.1| At5g26741/At5g26741 [Arabidopsis thaliana] gi|184...    80  2e-14
ref|NP_974233.1| expressed protein [Arabidopsis thaliana]              74  8e-13
ref|NP_910007.1| hypothetical protein [Oryza sativa] gi|18855055...    40  0.013
gb|EAA38447.1| GLP_191_25659_27785 [Giardia lamblia ATCC 50803]        37  0.15
ref|ZP_00367197.1| ABC transporter, ATP-binding protein [Campylo...    33  2.1
ref|NP_955252.1| CNPV229 ankyrin repeat protein [Canarypox virus...    33  2.1
emb|CAI76503.1| hypothetical protein, conserved [Theileria annul...    32  3.6
gb|AAO35401.1| ABC transporter [Clostridium tetani E88] gi|28210...    31  8.0
gb|AAV88688.1| carbohydrate-selective porin [Zymomonas mobilis s...    31  8.0

>gb|AAM64547.1| unknown [Arabidopsis thaliana]
          Length = 99

 Score = 80.1 bits (196), Expect = 1e-14
 Identities = 51/107 (47%), Positives = 62/107 (57%), Gaps = 13/107 (12%)

Query: 10  LFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIRAKKVLWLR 69
           +FRS S G YY   Y        MEKRQLFLRSYQF +K+SF E++  S+ R K+V+  R
Sbjct: 6   VFRSTSGGDYYGAPYGE-----YMEKRQLFLRSYQFSRKQSFAEKVSRSVTRVKRVVLTR 60

Query: 70  LWSSSAGGFRKLVFFPRFRCTFYYRRRRFSRLLNRHHRSKTESSSCF 116
           L S+      K V + R R  FYYRRRRF RLL+ H     E   CF
Sbjct: 61  LRSAPK---LKRVVWSRLRSAFYYRRRRFFRLLHLH-----EPXYCF 99


>gb|AAM98314.1| At5g26741/At5g26741 [Arabidopsis thaliana]
           gi|18421036|ref|NP_568485.1| expressed protein
           [Arabidopsis thaliana] gi|14488090|gb|AAK63865.1|
           AT5g26741 [Arabidopsis thaliana]
          Length = 99

 Score = 79.7 bits (195), Expect = 2e-14
 Identities = 48/96 (50%), Positives = 59/96 (61%), Gaps = 8/96 (8%)

Query: 10  LFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIRAKKVLWLR 69
           +FRS S G YY   Y        MEKRQLFLRSYQF +K+SF E++  S+ R K+V+  R
Sbjct: 6   VFRSTSGGDYYGAPYGE-----YMEKRQLFLRSYQFSRKQSFAEKVSRSVTRVKRVVLTR 60

Query: 70  LWSSSAGGFRKLVFFPRFRCTFYYRRRRFSRLLNRH 105
           L S+      K V + R R  FYYRRRRF RLL+ H
Sbjct: 61  LRSAPK---LKRVVWSRLRSAFYYRRRRFFRLLHLH 93


>ref|NP_974233.1| expressed protein [Arabidopsis thaliana]
          Length = 205

 Score = 73.9 bits (180), Expect = 8e-13
 Identities = 52/109 (47%), Positives = 70/109 (63%), Gaps = 13/109 (11%)

Query: 10  LFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIR-AKKVLWL 68
           +++S S G YY Y Y        +EKRQLFL+SYQF +K+SFTE+IK S+ R  KKV+ +
Sbjct: 109 VWQSNSNG-YYSYGY----GGGYVEKRQLFLKSYQFSRKQSFTEKIKISMKRVVKKVVCM 163

Query: 69  RLWSSSAGGFRKLVFFPRFRCTFYYRRRRFSRLLNRHHRSKTESSSCFW 117
           RL S+      K V + R +  F+YRRRRF RLL   H +K+ SS CF+
Sbjct: 164 RLKSARR---LKRVVWSRLKTAFFYRRRRFLRLL---HPNKS-SSYCFY 205


>ref|NP_910007.1| hypothetical protein [Oryza sativa] gi|18855055|gb|AAL79747.1|
           hypothetical protein [Oryza sativa]
          Length = 125

 Score = 40.0 bits (92), Expect = 0.013
 Identities = 33/101 (32%), Positives = 45/101 (43%), Gaps = 21/101 (20%)

Query: 33  MEKRQLFLRSYQFCQKKSFTERIKGSLIRAKKVLWL---RLWSSSAGGFRKLVFFPRFRC 89
           +E+RQLFLRSY F +    + R      RA++V+W+   RL  ++A G R+L    R   
Sbjct: 30  VERRQLFLRSYHFSRDVELSPR-----ARARRVVWVGLRRLRRAAATGLRRLRARLRLCF 84

Query: 90  TFYYRRRRFSRLLNRHHR-------------SKTESSSCFW 117
            +  RRR   R   R  R                 SS CFW
Sbjct: 85  AWVSRRRNIHRRGARFGRYGRLSGGAAHAPAPAASSSVCFW 125


>gb|EAA38447.1| GLP_191_25659_27785 [Giardia lamblia ATCC 50803]
          Length = 708

 Score = 36.6 bits (83), Expect = 0.15
 Identities = 29/113 (25%), Positives = 48/113 (41%), Gaps = 7/113 (6%)

Query: 2   ASVTVNPSLFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIK--GSL 59
           + + ++PS F   SL  YY  +Y  +  YT+      F  S  F  +    +RI+   SL
Sbjct: 299 SQLNLDPSKFVHPSLWMYYSIHYIQESKYTLR-----FFGSNLFKNEPFDVDRIRASASL 353

Query: 60  IRAKKVLWLRLWSSSAGGFRKLVFFPRFRCTFYYRRRRFSRLLNRHHRSKTES 112
              K     RL+ S    F  L   P ++C  +     F+R+   + + K +S
Sbjct: 354 FNVKLASESRLYWSYICDFLSLSMGPSYKCLLHPSDSSFTRIKLENAKDKRQS 406


>ref|ZP_00367197.1| ABC transporter, ATP-binding protein [Campylobacter coli RM2228]
          gi|57020432|gb|EAL57101.1| ABC transporter, ATP-binding
          protein [Campylobacter coli RM2228]
          Length = 211

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 10 LFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIRAKK 64
          L R+E+LGH +DY  + + N+++ +K  + ++    C K +    I  SL++  K
Sbjct: 3  LLRAENLGHSFDYPLFENLNFSLNQKDCIAIQGSSGCGKSTLL-HIISSLLKPNK 56


>ref|NP_955252.1| CNPV229 ankyrin repeat protein [Canarypox virus]
           gi|40233992|gb|AAR83575.1| CNPV229 ankyrin repeat
           protein [Canarypox virus]
          Length = 434

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 17/71 (23%), Positives = 37/71 (51%), Gaps = 2/71 (2%)

Query: 1   MASVTVNPSLFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLI 60
           +A + ++  +F SE   H+ +   Y   ++ +MEK  +       C  K+  E+IK +L+
Sbjct: 282 IAKLLISNIVFSSEQPKHFVENFEYIQSDFDIMEKNPIMKAYRDEC--KAEIEKIKNTLL 339

Query: 61  RAKKVLWLRLW 71
            ++++  L +W
Sbjct: 340 GSERISLLHIW 350


>emb|CAI76503.1| hypothetical protein, conserved [Theileria annulata]
          Length = 571

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 25/84 (29%), Positives = 39/84 (45%), Gaps = 13/84 (15%)

Query: 9   SLFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTE----RIKGSLIRAKK 64
           SL R +S   YY  ++   QNY  +      L++++F  K    +     +K  L+    
Sbjct: 429 SLPRDKSDNEYYISSF---QNYLHL------LKNFKFGSKCKLHDFYGITLKRELVHPSD 479

Query: 65  VLWLRLWSSSAGGFRKLVFFPRFR 88
             WLRL S    GF + + FP+FR
Sbjct: 480 TRWLRLCSYLNRGFSEALHFPQFR 503


>gb|AAO35401.1| ABC transporter [Clostridium tetani E88]
           gi|28210520|ref|NP_781464.1| ABC transporter
           [Clostridium tetani E88]
          Length = 293

 Score = 30.8 bits (68), Expect = 8.0
 Identities = 13/38 (34%), Positives = 24/38 (62%), Gaps = 1/38 (2%)

Query: 14  ESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSF 51
           E +G  YD NYY  +N+TM E +++    Y++  +++F
Sbjct: 83  EKIGFVYDENYY-YENFTMEEMKKIIAPFYKYWDEETF 119


>gb|AAV88688.1| carbohydrate-selective porin [Zymomonas mobilis subsp. mobilis ZM4]
           gi|56550960|ref|YP_161799.1| carbohydrate-selective
           porin [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 552

 Score = 30.8 bits (68), Expect = 8.0
 Identities = 14/30 (46%), Positives = 18/30 (59%)

Query: 1   MASVTVNPSLFRSESLGHYYDYNYYPDQNY 30
           M++VT NP L     LG +YD   +PDQ Y
Sbjct: 352 MSTVTENPGLPGIYRLGGFYDTGRFPDQRY 381


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.329    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,486,988
Number of Sequences: 2540612
Number of extensions: 6830884
Number of successful extensions: 19669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19659
Number of HSP's gapped (non-prelim): 10
length of query: 117
length of database: 863,360,394
effective HSP length: 93
effective length of query: 24
effective length of database: 627,083,478
effective search space: 15050003472
effective search space used: 15050003472
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 68 (30.8 bits)