BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.13
(98 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV59381.1| unknown protein [Oryza sativa (japonica cultivar-... 163 1e-39
gb|AAM64576.1| small nuclear ribonucleoprotein, putative [Arabid... 157 8e-38
pir||G96681 protein F1E22.8 [imported] - Arabidopsis thaliana gi... 143 9e-34
ref|XP_624537.1| PREDICTED: similar to CG2021-PA [Apis mellifera] 131 5e-30
ref|XP_320680.1| ENSANGP00000020162 [Anopheles gambiae str. PEST... 127 5e-29
gb|EAL29909.1| GA15189-PA [Drosophila pseudoobscura] 125 2e-28
gb|AAF47567.1| CG2021-PA [Drosophila melanogaster] gi|24655606|r... 125 3e-28
ref|XP_416009.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 125 3e-28
ref|NP_598700.1| U6 snRNA-associated Sm-like protein LSm8 [Mus m... 124 8e-28
gb|AAH68881.1| MGC82379 protein [Xenopus laevis] 122 2e-27
emb|CAF89998.1| unnamed protein product [Tetraodon nigroviridis] 122 3e-27
emb|CAE61561.1| Hypothetical protein CBG05470 [Caenorhabditis br... 108 3e-23
ref|NP_500964.1| u6 snRNA-associated Sm-like protein (lsm-8) [Ca... 105 2e-22
ref|NP_704263.1| u6 snRNA-associated sm-like protein, putative [... 103 8e-22
ref|XP_519332.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 103 8e-22
gb|AAW41037.1| u6 snRNA-associated sm-like protein lsm8, putativ... 100 7e-21
emb|CAA20133.1| SPCC1840.10 [Schizosaccharomyces pombe] gi|19076... 96 2e-19
gb|AAH45532.1| LSM8 protein [Homo sapiens] 93 2e-18
emb|CAG82802.1| unnamed protein product [Yarrowia lipolytica CLI... 83 2e-15
emb|CAH81648.1| u6 snRNA-associated sm-like protein, putative [P... 75 4e-13
>gb|AAV59381.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|50933005|ref|XP_476030.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 99
Score = 163 bits (412), Expect = 1e-39
Identities = 81/97 (83%), Positives = 88/97 (90%)
Query: 2 STGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGL 61
S GPGLESLVDQ ISVITNDGRNIVGTL+GFDQATNIILDESHERV+ST+EGVQ + LGL
Sbjct: 3 SAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVLGL 62
Query: 62 YIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
YIIRGDNISVVGE+DE+LD LD S +RA PLKPVIH
Sbjct: 63 YIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH 99
>gb|AAM64576.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
gi|20334918|gb|AAM16215.1| At1g65700/F1E22_3
[Arabidopsis thaliana] gi|17979539|gb|AAL50104.1|
At1g65700/F1E22_3 [Arabidopsis thaliana]
gi|15218779|ref|NP_176747.1| small nuclear
ribonucleoprotein, putative / snRNP, putative / Sm
protein, putative [Arabidopsis thaliana]
Length = 98
Score = 157 bits (396), Expect = 8e-38
Identities = 79/98 (80%), Positives = 86/98 (87%)
Query: 1 MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 60
M+ GLE+LVDQ ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ LG
Sbjct: 1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60
Query: 61 LYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
LYIIRGDNI V+GELDE+LD +LD SK+RA PLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
>pir||G96681 protein F1E22.8 [imported] - Arabidopsis thaliana
gi|6686407|gb|AAF23841.1| F1E22.8 [Arabidopsis thaliana]
Length = 583
Score = 143 bits (361), Expect = 9e-34
Identities = 71/84 (84%), Positives = 76/84 (89%)
Query: 15 ISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRGDNISVVGE 74
ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ LGLYIIRGDNI V+GE
Sbjct: 500 ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGE 559
Query: 75 LDEDLDKNLDKSKIRAQPLKPVIH 98
LDE+LD +LD SK+RA PLKPV+H
Sbjct: 560 LDEELDASLDFSKLRAHPLKPVVH 583
>ref|XP_624537.1| PREDICTED: similar to CG2021-PA [Apis mellifera]
Length = 96
Score = 131 bits (329), Expect = 5e-30
Identities = 59/93 (63%), Positives = 77/93 (82%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
GLES V+ +S+IT+DGRN +GTLKGFDQ NIILDESHERV+ST +GV+ + LGL+IIR
Sbjct: 4 GLESYVNHTVSIITSDGRNFIGTLKGFDQTINIILDESHERVYSTTQGVEQVVLGLHIIR 63
Query: 66 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
GDN+++VGELD+++D LD S IRA PL ++H
Sbjct: 64 GDNVAIVGELDDEMDARLDLSAIRADPLSSIVH 96
>ref|XP_320680.1| ENSANGP00000020162 [Anopheles gambiae str. PEST]
gi|21288006|gb|EAA00327.1| ENSANGP00000020162
[Anopheles gambiae str. PEST]
Length = 95
Score = 127 bits (320), Expect = 5e-29
Identities = 58/93 (62%), Positives = 74/93 (79%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
GLES V+ +S+IT DGRN VGTLKGFDQ N+ILDESHERV+S G++ + LGL+IIR
Sbjct: 3 GLESYVNNTVSIITADGRNFVGTLKGFDQTVNVILDESHERVYSMTAGIEQVVLGLHIIR 62
Query: 66 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
GDNI+++G+LDE +D LD S IR PL+PV+H
Sbjct: 63 GDNIAIIGQLDESVDSKLDFSTIRGMPLEPVVH 95
>gb|EAL29909.1| GA15189-PA [Drosophila pseudoobscura]
Length = 95
Score = 125 bits (315), Expect = 2e-28
Identities = 57/93 (61%), Positives = 73/93 (78%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
GLES ++ +S+IT DGRN +GTLKGFDQ NII+DE HERVFST G++ I LGL+IIR
Sbjct: 3 GLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTSSGIEQIVLGLHIIR 62
Query: 66 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
GDNI+V+G +DE +D LD + IR +PL PV+H
Sbjct: 63 GDNIAVIGLIDESIDSRLDFANIRGEPLGPVVH 95
>gb|AAF47567.1| CG2021-PA [Drosophila melanogaster] gi|24655606|ref|NP_647660.1|
CG2021-PA [Drosophila melanogaster]
Length = 95
Score = 125 bits (314), Expect = 3e-28
Identities = 57/93 (61%), Positives = 73/93 (78%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
GLES ++ +S+IT DGRN +GTLKGFDQ NII+DE HERVFST G++ I LGL+IIR
Sbjct: 3 GLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIR 62
Query: 66 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
GDNI+V+G +DE +D LD + IR +PL PV+H
Sbjct: 63 GDNIAVIGLIDETIDSRLDLANIRGEPLGPVVH 95
>ref|XP_416009.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8
[Gallus gallus]
Length = 228
Score = 125 bits (314), Expect = 3e-28
Identities = 56/92 (60%), Positives = 76/92 (81%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 137 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 196
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D LD IRA+PL V+H
Sbjct: 197 DNVAVIGEIDEETDSALDLGNIRAEPLNSVVH 228
>ref|NP_598700.1| U6 snRNA-associated Sm-like protein LSm8 [Mus musculus]
gi|27709054|ref|XP_216102.1| PREDICTED: similar to U6
snRNA-associated Sm-like protein LSm8 [Rattus
norvegicus] gi|57100503|ref|XP_540928.1| PREDICTED:
similar to U6 snRNA-associated Sm-like protein LSm8
[Canis familiaris] gi|57096120|ref|XP_532529.1|
PREDICTED: similar to U6 snRNA-associated Sm-like
protein LSm8 [Canis familiaris]
gi|51095108|gb|EAL24351.1| LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) [Homo sapiens]
gi|55727417|emb|CAH90464.1| hypothetical protein [Pongo
pygmaeus] gi|18490261|gb|AAH22440.1| U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gi|18044123|gb|AAH19458.1| U6 snRNA-associated Sm-like
protein LSm8 [Mus musculus] gi|12803805|gb|AAH02742.1|
U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gi|4309884|gb|AAD15542.1| similar to
Schizosaccharomyces pombe splicing factor; similar to
PID:3395591 [Homo sapiens] gi|5919157|gb|AAD56232.1| U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gi|52783125|sp|Q6ZWM4|LSM8_MOUSE U6 snRNA-associated
Sm-like protein LSm8 gi|10720071|sp|O95777|LSM8_HUMAN
U6 snRNA-associated Sm-like protein LSm8
gi|26353716|dbj|BAC40488.1| unnamed protein product
[Mus musculus] gi|7706425|ref|NP_057284.1| U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
Length = 96
Score = 124 bits (310), Expect = 8e-28
Identities = 56/92 (60%), Positives = 75/92 (80%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D LD IRA+PL V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>gb|AAH68881.1| MGC82379 protein [Xenopus laevis]
Length = 96
Score = 122 bits (307), Expect = 2e-27
Identities = 55/92 (59%), Positives = 76/92 (81%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 5 LENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D +LD IRA+PL V++
Sbjct: 65 DNVAVIGEIDEETDSSLDLGNIRAEPLNSVVN 96
>emb|CAF89998.1| unnamed protein product [Tetraodon nigroviridis]
Length = 99
Score = 122 bits (305), Expect = 3e-27
Identities = 58/101 (57%), Positives = 79/101 (77%), Gaps = 5/101 (4%)
Query: 1 MSTGPGLESLVDQQ---ISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLI 57
MST LES +++ ++++T+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ +
Sbjct: 1 MSTA--LESYINRDSGTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV 58
Query: 58 ALGLYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
LGLYI+RGDN++V+GE+DE+ D LD IRA+PL V+H
Sbjct: 59 VLGLYIVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH 99
>emb|CAE61561.1| Hypothetical protein CBG05470 [Caenorhabditis briggsae]
Length = 98
Score = 108 bits (270), Expect = 3e-23
Identities = 45/90 (50%), Positives = 71/90 (78%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LES +++ ++V+T DGR IVG LKGFDQ N++++++HER +S +GV + LGLYIIRG
Sbjct: 5 LESYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERCYSETDGVLITPLGLYIIRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPV 96
+N++++GE+DE+LDK +D ++A PL P+
Sbjct: 65 ENVAIIGEIDEELDKRVDLENVKAAPLAPI 94
>ref|NP_500964.1| u6 snRNA-associated Sm-like protein (lsm-8) [Caenorhabditis
elegans] gi|15487631|gb|AAL00875.1| Lsm sm-like protein
protein 8 [Caenorhabditis elegans]
Length = 98
Score = 105 bits (263), Expect = 2e-22
Identities = 44/90 (48%), Positives = 70/90 (76%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L++ +++ ++V+T DGR IVG LKGFDQ N++++++HER +S EGV LGLYIIRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPV 96
+N++++GE+DE+LDK +D ++A PL P+
Sbjct: 65 ENVAIIGEIDEELDKRVDLENVKAAPLAPI 94
>ref|NP_704263.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
falciparum 3D7] gi|23499002|emb|CAD51082.1| u6
snRNA-associated sm-like protein, putative [Plasmodium
falciparum 3D7]
Length = 94
Score = 103 bits (258), Expect = 8e-22
Identities = 50/90 (55%), Positives = 68/90 (75%), Gaps = 2/90 (2%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
+ES ++ +I VITND R G LKGFDQ TNIIL HER++ KE ++ I+LG+YIIRG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIY--KESMEKISLGVYIIRG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPV 96
D ++++GE+DED+DKN+ KI+ Q LKPV
Sbjct: 64 DTVTLIGEIDEDVDKNILHQKIKPQMLKPV 93
>ref|XP_519332.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 [Pan
troglodytes]
Length = 407
Score = 103 bits (258), Expect = 8e-22
Identities = 46/75 (61%), Positives = 60/75 (79%)
Query: 24 NIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRGDNISVVGELDEDLDKNL 83
++ GTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RGDN++V+GE+DE+ D L
Sbjct: 333 HMTGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSAL 392
Query: 84 DKSKIRAQPLKPVIH 98
D IRA+PL V H
Sbjct: 393 DLGNIRAEPLNSVAH 407
>gb|AAW41037.1| u6 snRNA-associated sm-like protein lsm8, putative [Cryptococcus
neoformans var. neoformans JEC21]
gi|50260523|gb|EAL23178.1| hypothetical protein
CNBA5220 [Cryptococcus neoformans var. neoformans
B-3501A] gi|58258887|ref|XP_566856.1| u6
snRNA-associated sm-like protein lsm8, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 95
Score = 100 bits (250), Expect = 7e-21
Identities = 48/87 (55%), Positives = 65/87 (74%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
+ES VD + VI DGR IVG LKG+D TN+IL +S ER FS +GV++I LGLY+I+G
Sbjct: 4 IESYVDHTVQVILQDGRVIVGKLKGYDPRTNLILSDSVEREFSMDQGVEMIPLGLYVIKG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPL 93
DN++VV ELDE+ D ++ + IRA+PL
Sbjct: 64 DNVAVVAELDEEKDSTINYNDIRAEPL 90
>emb|CAA20133.1| SPCC1840.10 [Schizosaccharomyces pombe]
gi|19076009|ref|NP_588509.1| hypothetical protein
SPCC1840.10 [Schizosaccharomyces pombe 972h-]
gi|7493429|pir||T41178 splicing factor - fission yeast
(Schizosaccharomyces pombe)
gi|59799781|sp|O74483|LSM8_SCHPO U6 snRNA-associated
Sm-like protein LSm8
Length = 94
Score = 95.9 bits (237), Expect = 2e-19
Identities = 40/92 (43%), Positives = 69/92 (74%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L ++Q++ VITNDGR ++G+LKGFD TN+IL +S ER+ S + ++ I LG+Y++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
+N+++VG ++E+LD ++ +KIR + + V+H
Sbjct: 63 ENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>gb|AAH45532.1| LSM8 protein [Homo sapiens]
Length = 67
Score = 92.8 bits (229), Expect = 2e-18
Identities = 41/63 (65%), Positives = 55/63 (87%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNI 69
DN+
Sbjct: 65 DNV 67
>emb|CAG82802.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50546088|ref|XP_500571.1| hypothetical protein
[Yarrowia lipolytica]
Length = 97
Score = 82.8 bits (203), Expect = 2e-15
Identities = 38/87 (43%), Positives = 61/87 (69%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L +++ ++VIT DGR I+G L+G+DQATN+IL + ERV + E +++ LGLY++RG
Sbjct: 4 LSGYINKPVTVITTDGRLILGILQGYDQATNVILSNTRERVITPDEPTEVVDLGLYMLRG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPL 93
D I+ VGE D +LD ++ ++R + L
Sbjct: 64 DCIACVGETDLELDGSIQWGEVRGEEL 90
>emb|CAH81648.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
chabaudi]
Length = 65
Score = 75.1 bits (183), Expect = 4e-13
Identities = 33/65 (50%), Positives = 54/65 (82%), Gaps = 2/65 (3%)
Query: 33 DQATNIILDESHERVFSTKEGVQLIALGLYIIRGDNISVVGELDEDLDKNLDKSKIRAQP 92
DQ TNIIL +ER++ KE ++ I+LG+YIIRGDN++++GE+DE++D+N+ ++KI+ +
Sbjct: 1 DQTTNIILGNCYERIY--KESLEKISLGIYIIRGDNVTLIGEIDEEVDRNILQNKIKPEM 58
Query: 93 LKPVI 97
LKPV+
Sbjct: 59 LKPVM 63
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.138 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,815,029
Number of Sequences: 2540612
Number of extensions: 5858857
Number of successful extensions: 12464
Number of sequences better than 10.0: 357
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 12155
Number of HSP's gapped (non-prelim): 366
length of query: 98
length of database: 863,360,394
effective HSP length: 74
effective length of query: 24
effective length of database: 675,355,106
effective search space: 16208522544
effective search space used: 16208522544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0048.13