BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0046b.4
(1706 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 1025 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 796 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 771 0.0
gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cul... 700 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 668 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 665 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 665 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 664 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 664 0.0
ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultiv... 662 0.0
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 660 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 658 0.0
gb|AAL76007.1| prpol [Zea mays] 658 0.0
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 651 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 649 0.0
gb|AAK50400.1| Putative retroelement [Oryza sativa] 627 e-177
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 621 e-176
ref|XP_470677.1| putative GAG-POL precursor [Oryza sativa (japon... 621 e-176
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 617 e-174
emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar... 614 e-174
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 1025 bits (2649), Expect = 0.0
Identities = 553/1395 (39%), Positives = 820/1395 (58%), Gaps = 131/1395 (9%)
Query: 49 PFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRLLPSTFKG 108
PF I +P + + ++ + G +DP EHL F T+M + V C++ P++ +
Sbjct: 211 PFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLRE 270
Query: 109 MAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYMARFS 168
+ WF PP SI +F L KF TQ++ ++ + + L+++ Q+ GE L+T+M RFS
Sbjct: 271 GPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFS 330
Query: 169 KMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIEQ--DDQK 226
K+ + + + NP++ + + + G L +RP +M +LR R +F+ IE+ D +
Sbjct: 331 KVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKFMQIEEHIDYHR 390
Query: 227 KQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRNPQGPP 286
K E + D SK + I RP N P F N
Sbjct: 391 KTYAE-----------NTDNSKGIRPPTIPTDRERHRP----NRGPRFHN---------- 425
Query: 287 AATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWCEYHKA 346
T L P +L Q ++ P + PP N DT++ C+YH+
Sbjct: 426 ---------------YTPLIVPRGKVLDEALQIELIPTLRPSQTPP-NADTSKRCQYHRN 469
Query: 347 LGHTTDNCWNLR---------------------------REIDRLIKAGHLANFVKD--- 376
GHTT+ C L+ R+ D ++G + +D
Sbjct: 470 YGHTTEGCQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHY 529
Query: 377 ------------------TAAPEVAKITQGDKGKGKEIVE------ELGDPVGECSSIAG 412
+ +PE T K K + ++ LG P E + IAG
Sbjct: 530 RSSRRKRSESPIRRTRPKSESPERRSRT---KQKVRTVINTIAGPVSLGQPPQEINYIAG 586
Query: 413 GFGGGAISSKARKRYVAAVHSVQESNEGECWVNHSPIIFTPQDFAHVIPHDNDPIVVTIR 472
GF GG S+ ARK+++ A+ SV S + + PI FT +DF + P +DP+V+T+
Sbjct: 587 GFAGGGCSNSARKKHLRAIQSVH-STPTQRRPHIPPITFTDEDFTAIDPSQDDPMVITVE 645
Query: 473 VNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVSVRGYVEIPT 532
++ + KV +DQGSS DI+Y + F ++ + E++++PY +VGF+ +RV +G++++ T
Sbjct: 646 IDKFAIAKVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYT 705
Query: 533 AFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILR 592
FG+ K ++YL++ +YN+LLGR ++N++ A++ST HL +K+P+ NG + +
Sbjct: 706 TFGDDYLSKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVH 765
Query: 593 VDQNAARECYLRSVA------LYGRKAAKESHRITEIFPQEG------------FSLDPR 634
+DQ ARECY+ S+ LY A + + R + LDPR
Sbjct: 766 IDQKTARECYVASLKVEPTRRLYTTSAERTTERRGRSTERRSRGRESRRHLVALVDLDPR 825
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDR--LITLLGDNLDLFAWTINDVPG 692
DD R + E+ + + ++DK K G + + +DR + L N DLFAWT D+PG
Sbjct: 826 --LDDPRMEAGEDLQPIFLRDKDRKTYMGTSLKPDDRETIGKTLTKNADLFAWTAADMPG 883
Query: 693 IDPKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVV 752
+ VITH+L++ A P+ Q +R++ EE+ KA + ET+KLI+A FI++ Y TWLANVV
Sbjct: 884 VKSDVITHRLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAHYTTWLANVV 943
Query: 753 MVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMH 812
MVKK NGKWRMC DYT LNK CPKDSYPLP +D+LVDGA+G+++LS +DAYSGYNQI M+
Sbjct: 944 MVKKTNGKWRMCVDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDAYSGYNQIQMY 1003
Query: 813 PSDEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSA 872
D E T F T+ N+ Y+ MPFGLKNAGATYQRLMD +F +GRN+EVYVDD++VKS
Sbjct: 1004 HRDREKTAFRTDSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSD 1063
Query: 873 RASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEM 932
H DLKE F LR Y+M+LNPEKC+FG++GGKFLGFMLT RGIE NP+K +AI EM
Sbjct: 1064 SCEQHVSDLKEVFQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEANPEKCKAITEM 1123
Query: 933 KSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETL 992
+SP +KE+QRL R+ +LSRF+P ++ P LKK SKF+WT+ECEQ F +LK L
Sbjct: 1124 RSPKGLKEIQRLVSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDECEQNFQQLKAFL 1183
Query: 993 ATLPVLSKPTPSVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEK 1052
A+ PV+ KP P+V+YLAV+++AVS+ L+QE +++ +YFVS L AE RYQ +EK
Sbjct: 1184 ASPPVIQKPNAREPIVVYLAVSNEAVSSALVQEIKAEERPVYFVSRVLHDAETRYQMVEK 1243
Query: 1053 AALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRG 1112
A A++ TARR+R YFQ+ +V ++T+ P+ ++L KPDL+GR++ W+VELSE+ I+Y+PRG
Sbjct: 1244 VAFALVITARRMRMYFQNHKVIVRTNYPIMKILTKPDLAGRMIGWAVELSEFHIEYQPRG 1303
Query: 1113 QVTVQSLIDFVAELTPTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFE 1172
+ Q+L DF AELTP E+T W L VDGSSN+ SGAG+ +E P ++++EQ++KFE
Sbjct: 1304 AIKSQALADFTAELTPYLTERTP-RWTLYVDGSSNSRSSGAGVVLEGPGEIVVEQAMKFE 1362
Query: 1173 FKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVR 1232
FK SNNQ+EYEA+IAGL LAIEL V + K DS+LVV Q+ GEY+V++ L +Y V+
Sbjct: 1363 FKTSNNQAEYEAIIAGLHLAIELEVTNITCKSDSRLVVGQLTGEYEVRETLLQQYFHFVK 1422
Query: 1233 RLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVEIKLKAV 1292
L+ KEI +HV R N RAD L++LA+ + G +++ I TL +PS+ E
Sbjct: 1423 NLLNRFKEISFQHVRRENNTRADALSRLATLKKKGAHRSAIHVTLAKPSVGTEEC----- 1477
Query: 1293 KSVSEGEISWMESIKTFLESPPKEDDLNTRTKRREASFYTLVGGELYRRGIMSPMLKCVD 1352
++ + +WM IK +L + L +T + +A+ Y L+G +LYRRG P+LKC+
Sbjct: 1478 -MATDTQPNWMTPIKQYLTDGVCDPHLE-KTMKLQAARYILIGEDLYRRGYSRPLLKCLG 1535
Query: 1353 IKDALGIMAEVHEGV 1367
+ +M E+HEG+
Sbjct: 1536 PEQVTYVMTELHEGI 1550
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 796 bits (2055), Expect = 0.0
Identities = 472/1346 (35%), Positives = 746/1346 (55%), Gaps = 75/1346 (5%)
Query: 60 PKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRLLPSTFKGMAMQWFIRQPP 119
P + + + + G++DP E+LR + T + G D K ++LP+ +G+A+ W+ PP
Sbjct: 353 PINFKLSNITKYKGDTDPNEYLRVYETAVEAAGGDDTTKAKILPTMLEGVALSWYTTIPP 412
Query: 120 FSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYMARFSKMAVQLEDENP 179
+I ++ + F F DL ++ Q PGE L++++ +FS++ Q+ +
Sbjct: 413 MTIYSWEHMRDTFRAGFIGAYEEPKEADDLYAMKQLPGETLRSFIVKFSRVRCQIRHVDD 472
Query: 180 DVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIEQDDQKKQEREE---GRKQ 236
++ +A+ K L G L DL R K DL R++ F E+D+ + QE E G+KQ
Sbjct: 473 EMLIAAAKRALLPGPLRFDLARNRPKTTKDLFERMESFARGEEDELRVQEEEAVLLGKKQ 532
Query: 237 SQSGGVSQDKSKAGKET-----------RIAQTPRVPRPGPYQNS-----KPGFQNTWH- 279
S++ +SQ + + G+ T R Q +V G N+ K + NT
Sbjct: 533 SKNKQISQGEEQKGENTGKPWKKFKYDYRQDQKKQVNFIGDGSNNEREKGKHQWDNTRRG 592
Query: 280 RNPQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNR 339
RN G GQ S N QT Q P ++
Sbjct: 593 RNNWGQSGKGRGQWWNSGRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHSTEEC-YSK 651
Query: 340 WCEYHKALGHTTDNCWNLRREIDRLI-------KAGHLANFVKDTAAPEVAKITQGDKGK 392
+C H GH+T+ C + +++ + + AP+V KI
Sbjct: 652 FCHIHGPGGHSTEECRQMTHLLEKHVNRYENKYEGARDQRGQNAIEAPQVMKI------- 704
Query: 393 GKEIVEELGDPVGECSSIAGGFGGGAISSKARKRYVAAVHSVQESNEGECWVNHSPII-F 451
E +EE+ P ++I GG G S + RK YV V+ V S + V +I F
Sbjct: 705 --EAIEEV--PKRVINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISF 760
Query: 452 TPQDFAHVIPHDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYK 511
P+D ++ DP+VV++ + ++V +D GSSAD+++ DAF ++ + E L
Sbjct: 761 GPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAG 820
Query: 512 GTLVGFTGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAV 571
L GF G +V G + + FG+G V+K ++ + V+ YN +LGR T+N A+
Sbjct: 821 VPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAI 880
Query: 572 ISTAHLTVKYPACNGKVGILRVDQNAARECYLRSVALYGRKAAKESHRITEIFPQEGFSL 631
I ++ +K P G + + R +Q AAR+ L+ G + K H + + ++G +
Sbjct: 881 IHHNYICMKLPGLRGVITV-RGEQLAARKYELQ-----GTPSVKGVHVVDQ---KQGEYI 931
Query: 632 DPRDDADDFRPQPLEETKQVQVKD----KFLKIGSGLTTEQEDRLITLLGDNLDLFAWTI 687
+ +P P +TK+VQ+ + KF+ IG L E+ ++ ++ +N+ +FAW+
Sbjct: 932 KIQ------KPIPEGKTKKVQLDEHNPGKFILIGENLEKHIEEEILKVVKENMAVFAWSP 985
Query: 688 NDVPGIDPKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTW 747
+++ G+D +I H LAI+ G P Q RRMS ++ +A ++E EKL+KA+ IREV +P W
Sbjct: 986 DELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEW 1045
Query: 748 LANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYN 807
LAN V+VKKANGKWRMC D+T LNK CPKD +PLP +D+LVD +G EL+S +DAYSGY+
Sbjct: 1046 LANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYH 1105
Query: 808 QIMMHPSDEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDM 867
Q+ M DEE T+F+T YC+ MPFGLKNAGAT+ RL+ K+ +KQ+GRN+E Y+DD+
Sbjct: 1106 QVFMVKEDEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYIDDI 1165
Query: 868 IVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGR 927
+VKS +A HG DL+E F+ LR +KLNPEKC FG++ GK LGF+++ RGIE NPDK
Sbjct: 1166 VVKSKQAFTHGKDLQETFENLRKCSVKLNPEKCVFGVRAGKLLGFLVSKRGIEANPDKIA 1225
Query: 928 AILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTK 987
AI +M+ P + +EVQRLTGRMA+LSRFL + +K PFF L+ + F+WT EC+QAF
Sbjct: 1226 AIHQMEPPKNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDD 1285
Query: 988 LKETLATLPVLSKPTPSVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRY 1047
LK+ L +P L+ P PL++Y+A T VS VL+QEE +Q +YFVS LQG + RY
Sbjct: 1286 LKKYLHEMPTLASPPKGQPLLMYVAATPATVSAVLVQEEENRQVPVYFVSEALQGPKTRY 1345
Query: 1048 QKIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQ 1107
++EK AI+ +R+LR YF S + I + P+ +VL +++GR+ W++EL +D++
Sbjct: 1346 SEVEKLIYAIVMASRKLRHYFLSHDITIPSAYPIGEVLTNKEVAGRIAKWAMELLPFDLK 1405
Query: 1108 YEPRGQVTVQSLIDFVAELTPTE---GEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMI 1164
Y R + Q L DFVAE TP E E+ + W++ DG+ N G+GA +++P K
Sbjct: 1406 YISRTAIKSQVLADFVAEWTPNEVEQQEEVKKPWIVFSDGACNAAGAGAAAVVKTPMKQT 1465
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
++ S++ F ++NN +EYE ++ +R A LG ++L +K DS+LV ++ K+ +
Sbjct: 1466 LKYSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETM 1525
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 1284
+KYLE R I ++ + R +N AD LAK A+TG+ + + + +PS +
Sbjct: 1526 AKYLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQ--PLENSFFDIITQPSYEK 1583
Query: 1285 VEIKLKAVKSVSEGEISWMESIKTFLES---PPKEDDLNTRTKRREASFYTLVGGELYRR 1341
E+ + + E W E I +L S P KE++ + + + Y +V G+LY+
Sbjct: 1584 KEV------ACIQREGDWREPILKYLVSAQLPEKEEE--AKRIQLMSKKYKVVEGQLYKS 1635
Query: 1342 GIMSPMLKCVDIKDALGIMAEVHEGV 1367
G+ +P+LKCV ++ + ++ E+HEG+
Sbjct: 1636 GVTAPLLKCVTREEGMKMVVEIHEGL 1661
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 771 bits (1992), Expect = 0.0
Identities = 495/1371 (36%), Positives = 721/1371 (52%), Gaps = 134/1371 (9%)
Query: 49 PFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGAT----DAVKCRLLPS 104
PF IT V I + Q + L++++G +DP E L FN + T DA +C++
Sbjct: 203 PFTRRITNVSI-RGAQKIKLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIE 261
Query: 105 TFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYM 164
G A WF R P SID+F L++ FL ++ + + DL SI Q E L++++
Sbjct: 262 HLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFV 321
Query: 165 ARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRD-LTRRPAKDMLDLRARVQEFILIEQD 223
RF K+ V + + + +N + RD +T + D R FI +E++
Sbjct: 322 DRF-KLVVTNITVPDEAAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELEEE 380
Query: 224 DQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRNPQ 283
+ K T + V + GP +++P + RNP
Sbjct: 381 KLILARKHNSTK-----------------TPACKDAVVIKVGPDDSNEP--RQHLDRNP- 420
Query: 284 GPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWCEY 343
+AG+ S T P + +R P P +CEY
Sbjct: 421 -----SAGRKPTSFLVSTETPDAKPWNKYIRDADS---------PAAGPM------YCEY 460
Query: 344 HKALGHTTDNCWNLRREIDRLIKAGHLA---------------------NFVKDTAAP-- 380
HK+ H+T+NC L+ + K+G + ++ D P
Sbjct: 461 HKSRAHSTENCRFLQGLLMAKYKSGGITIECDRPPINNKNQRRNETTARQYLNDQTKPPT 520
Query: 381 --EVAKITQGD------KGKGKEIVEELGDPVGECSSIAGGFGGGAISSKARKRYVAAVH 432
E IT D + GK I E V + I GG + S ++ K+Y
Sbjct: 521 PAEQGIITSADDPAAKRQRNGKAIAAE-PVVVRQVHVIMGGLQNCSDSVRSIKQYRKKAE 579
Query: 433 SVQESNEGECWVNH----SPIIFTPQDFAHVIPHDNDPIVVTIRVNNYVTKKVFLDQGSS 488
V + +PI FT D + NDP+VV + +++ +V +D GSS
Sbjct: 580 MVVAWPSSTSTTRNPNQSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSS 639
Query: 489 ADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVSVRGYVEIPTAFGEGEFVKKFQVKYL 548
D+I+ D + + + +KP L GF GD V G +++P G G VK++
Sbjct: 640 VDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVG-GLIA---WVKFV 695
Query: 549 VLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQNAARECYLRSVAL 608
V+ A YNV+LG ++++ A+ ST H VK+P NG + LR + A
Sbjct: 696 VIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG-IFTLRAPKEA----------- 743
Query: 609 YGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQ 668
K S+ +E+ E ++D D + + +G+ ++
Sbjct: 744 ---KTPSRSYEESELCRTEMVNIDESDPT------------------RCVGVGAEISPSI 782
Query: 669 EDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQL 728
LI LL N FAW+I D+ GIDP + H+L + P PV Q RR++ E+ +AV
Sbjct: 783 RLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNE 842
Query: 729 ETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLV 788
E EKL+KA I EV+YP WLAN V+VKK NGKWR+C DYT LNK CPKDSYPLP++D+LV
Sbjct: 843 EVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLV 902
Query: 789 DGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTNQANYCYKTMPFGLKNAGATYQRLM 848
+ SGN LLS MDA+SGYNQI+MH D+E T+F+T++ YCYK M FGLKNAGATYQR +
Sbjct: 903 EATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFV 962
Query: 849 DKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGK 908
+K+ + Q+GR +EVY+DDM+VKS + DH L + FD L TY MKLNP KC+FG+ G+
Sbjct: 963 NKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGE 1022
Query: 909 FLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTC 968
FLG+++T RGIE NP + RAILE+ SP + +EVQRLTGR+AAL+RF+ + DK PF+
Sbjct: 1023 FLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNL 1082
Query: 969 LKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPSVPLVLYLAVTDKAVSTVLLQEEGK 1028
LK+ ++F W ++ E+AF KLK+ L+T P+L KP L LY+AV+D AVS+VL++E+
Sbjct: 1083 LKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRG 1142
Query: 1029 KQKVIYFVSHTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKP 1088
+Q+ I++ S +L AE RY IEKAALA++ +AR+LRPYFQS + + TD PLR L P
Sbjct: 1143 EQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPLRVALHSP 1202
Query: 1089 DLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFVAELTPTEGEKTQG-----EWVLSVD 1143
SGR+ W+VELSEYDI + PR + Q L DF+ EL E+ EW L VD
Sbjct: 1203 SQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEEWSLYVD 1262
Query: 1144 GSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIK 1203
GSS+ GSG GI + SP ++EQS + F A+NN +EYE LIAGLRLA + + +
Sbjct: 1263 GSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAF 1322
Query: 1204 GDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLAST 1263
DSQL+ Q+ GEY+ K+ ++ YL++V+ + + + K+ +PRG N AD LA LA T
Sbjct: 1323 TDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALALT 1382
Query: 1264 GRLGNYQTVIQETLPRPSI---DLVEIKLKAVKSVSEGE----ISWMESIKTFL-ESPPK 1315
+ + E++ +PSI D VEI + ++S + + W I+ +L +
Sbjct: 1383 SDSDLRRIIPVESIDKPSIDSTDAVEI-VNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP 1441
Query: 1316 EDDLNTRTKRREASFYTLVGGELYRRGIMSPMLKCVDIKDALGIMAEVHEG 1366
D R R +A+ YTL+ L + ML C+ + IM E HEG
Sbjct: 1442 SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEG 1492
>gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533914|ref|NP_921259.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|14018058|gb|AAK52121.1| Putative retroelement [Oryza
sativa]
Length = 2079
Score = 700 bits (1807), Expect = 0.0
Identities = 440/1334 (32%), Positives = 675/1334 (49%), Gaps = 169/1334 (12%)
Query: 60 PKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRLLPSTFKGMAMQWFIRQPP 119
P+ + A++ + G DP E L+ ++T + GA D LP+ KG A W + PP
Sbjct: 575 PERFRPGAIEKYDGSIDPEEFLQVYSTVLYAAGADDNAVANYLPTALKGSARSWLMHLPP 634
Query: 120 FSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYMARFSKMAVQLEDENP 179
+SI ++ DL +F+ F A DL ++ Q GE L+ Y+ RF++ + +
Sbjct: 635 YSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTIPEITD 694
Query: 180 DVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIEQDDQKKQEREEGRKQSQS 239
+ +FK+G+R ++L R L V+ ++ ++K ++ + + +S
Sbjct: 695 ASVIRAFKSGVRDRYTTQELATRHITTTRRLFQIVERCAHVDDALRRKNDKPKTGGEKKS 754
Query: 240 GGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRNPQGPPAATAGQTGASPAP 299
D S++ K+ +N K G +
Sbjct: 755 AA---DTSESSKK---------------KNRKNGKR------------------------ 772
Query: 300 VPLTKLNAPLSTILRAVGQTNVVQYPPPPRRP-PANVDTNR-WCEYHKALGHTTDNCWNL 357
+A + +Y PPRRP P DT + WC HK H+ ++C
Sbjct: 773 --------------KAQAEVLAAEYANPPRRPDPQGSDTKKSWCPIHKTDRHSLEDCLVF 818
Query: 358 RREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELGDPVGECSSIAGGFGGG 417
++ +++ H+A +KGK +VE+ + S A
Sbjct: 819 KKSLEK-----HMAF----------------EKGKRVRVVEKNEESPPHESDSA------ 851
Query: 418 AISSKARKRYVAAVHSVQESNEGECWVNHSPIIFTPQDFAHVIPHDNDPIVVTIRVNNYV 477
+ + V+H +P PIVV + N
Sbjct: 852 -------------------YPDSDLHVSH----------ILAVPRRRYPIVVEPTIRNIK 882
Query: 478 TKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVS-VRGYVEIPTAFGE 536
+V +D GSS ++++ + +G+ +S+L P G T S G + +P FG+
Sbjct: 883 VARVLIDGGSSINLLFASTLEAMGIPQSELTPTDQPFHGITPQSSSRPLGKITLPVTFGQ 942
Query: 537 GEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQN 596
+ Q+ + V YN ++GR L K A A+ +K P G G + + N
Sbjct: 943 ANNFRTEQITFDVAEFDTAYNAIIGRTALAKFVAASHYAYQVLKMP---GPKGTITIQGN 999
Query: 597 A--ARECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQPLEETKQVQVK 654
A A +C RS+ + E P + + +T +
Sbjct: 1000 AKLAVQCDKRSLDMV-----------------EQTPTPPATSEPPKKVRKPNKTPKPNGA 1042
Query: 655 DKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPGATPVIQP 714
K + + S + E LI L DN D+FAW +D+PG+ +VI HKL +RP A PV Q
Sbjct: 1043 VKIVPLSSANPDKNELALIAFLRDNADVFAWQPSDMPGVPREVIEHKLMVRPDAKPVKQR 1102
Query: 715 RRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVC 774
RR + ++ +A++ E +KL+KA FIREV +P WLAN V+V+KANGKWRMC D+T LNK C
Sbjct: 1103 LRRFAPDRKQAIREELDKLLKAGFIREVLHPEWLANPVIVRKANGKWRMCVDFTDLNKAC 1162
Query: 775 PKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTNQANYCYKTMP 834
PKD +PLP +D+LV +G ELLS +DAYSGY+QI M DEE T F+T +C+ MP
Sbjct: 1163 PKDHFPLPRIDQLVYSTAGCELLSFLDAYSGYHQISMVKEDEEKTAFITPFGVFCHVKMP 1222
Query: 835 FGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMK 894
FGL AG T+QR + G N+E YVD ++VK+ + DL+E FD LR Y++
Sbjct: 1223 FGLITAGNTFQRTL--------GNNVEAYVDGIVVKTKTSDSLIDDLRETFDNLRRYRLM 1274
Query: 895 LNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRF 954
LNPEKC+FG+ GK LGF+++ RGIE NP+K +AI MKSPT +KEVQ+LTG MAALSRF
Sbjct: 1275 LNPEKCTFGVPSGKLLGFLVSGRGIEANPEKIKAIENMKSPTRLKEVQKLTGYMAALSRF 1334
Query: 955 LPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPSVPLVLYLAVT 1014
+ G++ PFF LKK KF WT+E ++AF LK L+ PVL P P+ L LY+A T
Sbjct: 1335 VARIGEQGQPFFALLKKQDKFVWTQETKEAFITLKRYLSNPPVLVAPQPNEELFLYIAAT 1394
Query: 1015 DKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVK 1074
+VS V++ E K Q+ +Y+VS L A+ RY +I+K AI+ T+R+LR YFQ+ +V
Sbjct: 1395 PHSVSIVIVVEREKVQRPVYYVSEALHDAKTRYPQIQKLLYAIIMTSRKLRHYFQAHRVT 1454
Query: 1075 IKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFVAELT-PTEGEK 1133
I + PL +V++ D+ GR+ W VELS++D+ + P+ + Q L DFVA+ T P
Sbjct: 1455 IVSSFPLGEVVRNKDVVGRIAKWVVELSQFDVHFMPQTAIKSQVLADFVADWTMPDNKSD 1514
Query: 1134 TQGE---WVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLR 1190
QG+ W ++ DG+ N+ G+GAG+ + SP + ++ F+A+NN +EYE L+AG+R
Sbjct: 1515 NQGDNETWTMAFDGALNSQGAGAGLILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIR 1574
Query: 1191 LAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQ 1250
A LGV++L +KGDS+LV QV +Y+ +P+LSKYL VR+L I++ HV R
Sbjct: 1575 AAAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKD 1634
Query: 1251 NERADVLAKLASTGRLGNYQTVIQETLPRPSI----------------DLVEIKLKAVKS 1294
N D LA+ AS T + + L +PS+ D++E++ +AV
Sbjct: 1635 NVEPDDLARRASRREPLEPDTFL-DVLTKPSVKEVSGEVVPSTPDISSDVIEVE-RAVAD 1692
Query: 1295 VSEGEISWMESIKTFLESPP-KEDDLNTRTKRREASFYTLVGGELYRRGIMSPMLKCVDI 1353
+ E W + F+ S E+D R+A Y ++G +LY++ +LKCV I
Sbjct: 1693 I-ETTDDWRTPLIKFINSEELPENDTEAEKITRKAKIYCMIGNDLYKKVPNGILLKCVSI 1751
Query: 1354 KDALGIMAEVHEGV 1367
D ++ ++HEG+
Sbjct: 1752 DDGRQLLLDIHEGI 1765
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 668 bits (1724), Expect = 0.0
Identities = 435/1346 (32%), Positives = 662/1346 (48%), Gaps = 109/1346 (8%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G +
Sbjct: 413 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I ++ +L F+ F T +DL ++ Q+ GE L+
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLR 532
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y+ RFS+ ++ D DV +A+F G+R +L R+P + + + + E+
Sbjct: 533 DYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA--- 589
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
K ++ KQS GP +W +N
Sbjct: 590 ----KAEDAVTASKQS---------------------------GP----------SWKQN 608
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWC 341
P G +L A S R + N + N C
Sbjct: 609 KGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTF-----------DKIMNSQC 657
Query: 342 EYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELG 401
+H H +C+ ++ D+ K A D K GD G +
Sbjct: 658 PHHPNSNHVAKDCFVYKQFADQYTKT---ARKNSDEEQSTSRKKDDGDTPAGFQ------ 708
Query: 402 DPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQDFAHV 459
D E + I FGG RK+ + +++VQ + I F D
Sbjct: 709 DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDR 765
Query: 460 IPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-F 517
+ H P+V+ V N ++ +D GS+ +I++ D + + S+LKP G
Sbjct: 766 VVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVI 825
Query: 518 TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 577
G + G + +P FG E + + + V Y+ +LGR L K AV ++
Sbjct: 826 PGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYM 885
Query: 578 TVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPR 634
+K P G + LR D A C S + + +A+E R+ EG
Sbjct: 886 MMKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------ 938
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 694
+ + ++ + + K K + + T+ +N D+FAW +D+PGI
Sbjct: 939 ----EVPATKISKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIP 986
Query: 695 PKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMV 754
+VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLAN V+V
Sbjct: 987 REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 1046
Query: 755 KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 814
+K G+WRMC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI + S
Sbjct: 1047 RKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKES 1106
Query: 815 DEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 874
D T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +
Sbjct: 1107 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1166
Query: 875 SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 934
D DL+E F +R ++MKLNPEKC+FG+ GK LGFM++ RGI+ NP+K AIL MK
Sbjct: 1167 DDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKP 1226
Query: 935 PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 994
P++ K+VQ+LTG MAALSRF+ G++ PFF LKK FQW E ++AF K+ L
Sbjct: 1227 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTE 1286
Query: 995 LPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 1048
PVL+ P P PL+LY++ T + VSTVL+ +EEG QKV IYFVS L ++ RY
Sbjct: 1287 PPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYP 1346
Query: 1049 KIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 1108
+++K IL T R+L YFQ V + T PL +L +++GR+ W++EL DI +
Sbjct: 1347 QVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREVNGRIAKWALELMSLDISF 1406
Query: 1109 EPRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMI 1164
+PR + Q+L DFVAE T + E T E W + DGS +G+GAG+ + SP
Sbjct: 1407 KPRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGER 1465
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
+ L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+ D +
Sbjct: 1466 LSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNM 1525
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 1284
Y + VR+L + +++ HV R NE AD LA S R V E L P++
Sbjct: 1526 MAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDVFVEHLYTPTVPH 1584
Query: 1285 VE-IKLKAVKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGGELYRR 1341
+ ++ + E+ W E + FL S P++ D R RR + Y L ELY++
Sbjct: 1585 KDTTQVAGTHDAAMVEVDWREPLIRFLTSQELPQDKDEAERISRR-SKLYVLHEAELYKK 1643
Query: 1342 GIMSPMLKCVDIKDALGIMAEVHEGV 1367
+ +CV +++ ++ ++H G+
Sbjct: 1644 SPSGILQRCVSLEEGRQLLKDIHSGI 1669
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 665 bits (1717), Expect = 0.0
Identities = 432/1345 (32%), Positives = 660/1345 (48%), Gaps = 107/1345 (7%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G +
Sbjct: 417 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 476
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I ++ +L F+ F T +DL ++ Q+ GE L+
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLR 536
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y+ RFS+ ++ D DV +A+F G+R +L R+P + + + + E+
Sbjct: 537 DYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA--- 593
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
K ++ KQS GP +W +N
Sbjct: 594 ----KAEDAVTASKQS---------------------------GP----------SWKQN 612
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWC 341
P G +L A S R + N + N C
Sbjct: 613 KGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTF-----------DKIMNSQC 661
Query: 342 EYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELG 401
+H H +C+ ++ D+ K A D K GD G +
Sbjct: 662 PHHPNSNHVAKDCFVYKQFADQYTKT---ARKNSDEEQSTSRKKDDGDTLAGFQ------ 712
Query: 402 DPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQDFAHV 459
D E + I FGG RK+ + +++VQ + I F D
Sbjct: 713 DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDR 769
Query: 460 IPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-F 517
+ H P+V+ V N ++ +D GS+ +I++ D + + S+LKP G
Sbjct: 770 VVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVI 829
Query: 518 TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 577
G + G + +P FG E + + + V Y+ +LGR L K AV ++
Sbjct: 830 PGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYM 889
Query: 578 TVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPR 634
+K P G + LR D A C S + + +A+E R+ EG
Sbjct: 890 MMKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------ 942
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 694
+ + ++ + + K K + + T+ +N D+FAW +D+PGI
Sbjct: 943 ----EVPATKISKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIP 990
Query: 695 PKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMV 754
+VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLAN V+V
Sbjct: 991 REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 1050
Query: 755 KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 814
+K G+WRMC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI + S
Sbjct: 1051 RKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKES 1110
Query: 815 DEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 874
D T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +
Sbjct: 1111 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1170
Query: 875 SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 934
D DL+E F +R ++MKLNPEKC+FG+ GK LGFM++ RGI+ NP+K AIL MK
Sbjct: 1171 DDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKP 1230
Query: 935 PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 994
P++ K+VQ+LTG MAALSRF+ G++ PFF LKK FQW E ++AF K+ L
Sbjct: 1231 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTE 1290
Query: 995 LPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 1048
PVL+ P P PL+LY++ T + VSTVL+ +EEG QKV IYFVS L ++ RY
Sbjct: 1291 PPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYP 1350
Query: 1049 KIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 1108
+++K IL T R+L YFQ V + T PL +L + +GR+ W++EL D+ +
Sbjct: 1351 QVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDLSF 1410
Query: 1109 EPRGQVTVQSLIDFVAELTPTEGE---KTQGEWVLSVDGSSNNTGSGAGITIESPDKMII 1165
+PR + Q+L DFVAE T + + K W + DGS +G+GAG+ + SP +
Sbjct: 1411 KPRISIKSQALADFVAEWTECQEDTTVKKMEHWTMHFDGSKRLSGTGAGVVLISPTGERL 1470
Query: 1166 EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 1225
L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+ D +
Sbjct: 1471 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMK 1530
Query: 1226 KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 1285
Y + VR+L + +++ HV R NE AD LA S + V E L P++
Sbjct: 1531 AYRQEVRKLEDKFDGLELSHVLRHDNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPHK 1589
Query: 1286 EIKLKA-VKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGGELYRRG 1342
+ A + V+ E W E + FL S P++ D R RR + Y + ELY++
Sbjct: 1590 DTTQAAGIHDVAMVETDWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKKS 1648
Query: 1343 IMSPMLKCVDIKDALGIMAEVHEGV 1367
+ +CV +++ ++ ++H G+
Sbjct: 1649 PSGILQRCVSLEEGRQLLKDIHSGI 1673
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 665 bits (1715), Expect = 0.0
Identities = 434/1346 (32%), Positives = 658/1346 (48%), Gaps = 109/1346 (8%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G +
Sbjct: 350 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 409
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I ++ +L F+ F T +DL ++ Q+ GE L+
Sbjct: 410 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLR 469
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y+ RFS+ ++ D DV +A+F G+R +L R+P + + + + E+
Sbjct: 470 DYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYT--- 526
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
K ++ KQS GP +W +N
Sbjct: 527 ----KAEDAVTASKQS---------------------------GP----------SWKQN 545
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWC 341
P G +L A S R + N + N C
Sbjct: 546 KGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTF-----------DKIMNSQC 594
Query: 342 EYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELG 401
+H H +C+ ++ D+ K A D K GD G +
Sbjct: 595 PHHPNSNHVAKDCFVYKQFADQYTKT---ARKNSDEEQSTSRKKDDGDTPAGFQ------ 645
Query: 402 DPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQDFAHV 459
D E + I FGG RK+ + +++VQ + I F D
Sbjct: 646 DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDR 702
Query: 460 IPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-F 517
+ H P+V+ V N ++ +D GS+ +I++ D + + S+LKP G
Sbjct: 703 VVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVI 762
Query: 518 TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 577
G + G + +P FG E + + + V Y+ +LGR L K AV ++
Sbjct: 763 PGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYM 822
Query: 578 TVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPR 634
+K P G + LR D A C S + + +A+E R+ EG
Sbjct: 823 MMKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------ 875
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 694
+ ++ + + K K + + T+ +N D+FAW +D+PGI
Sbjct: 876 ----EIPATKTSKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIP 923
Query: 695 PKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMV 754
+VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLAN V+V
Sbjct: 924 REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 983
Query: 755 KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 814
+K G+WRMC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI + S
Sbjct: 984 RKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKES 1043
Query: 815 DEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 874
D T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +
Sbjct: 1044 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1103
Query: 875 SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 934
D DL+E F +R ++MKLNPEKC+FG+ GK LGFM++ RGI+ NP+K AIL MK
Sbjct: 1104 DDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKP 1163
Query: 935 PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 994
P++ K+VQ+LTG MAALSRF+ G++ PFF LKK FQW E ++AF K+ L
Sbjct: 1164 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTE 1223
Query: 995 LPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 1048
P+L+ P P PL+LY++ T + VSTVL+ +EEG QKV IYFVS L ++ RY
Sbjct: 1224 PPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYP 1283
Query: 1049 KIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 1108
+++K IL T R+L YFQ V + T PL +L + +GR+ W++EL DI +
Sbjct: 1284 QVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISF 1343
Query: 1109 EPRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMI 1164
+PR + Q+L DFVAE T + E T E W + DGS +G+GAG+ + SP
Sbjct: 1344 KPRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGER 1402
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
+ L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+ D +
Sbjct: 1403 LSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNM 1462
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 1284
Y + VR+L + +++ HV R NE AD LA S + V E L P++
Sbjct: 1463 MAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREMAP-SDVFVEHLYTPTVPH 1521
Query: 1285 VEIKLKA-VKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGGELYRR 1341
+ A V+ E W E FL S P++ D R RR + Y + ELY++
Sbjct: 1522 KDTTQDADTHDVALVEADWREPFIRFLTSQELPQDKDEAERISRR-SKLYAMHEAELYKK 1580
Query: 1342 GIMSPMLKCVDIKDALGIMAEVHEGV 1367
+ +CV +++ ++ ++H G+
Sbjct: 1581 SPSGILQRCVSLEEGRQLLKDIHSGI 1606
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 664 bits (1714), Expect = 0.0
Identities = 434/1346 (32%), Positives = 661/1346 (48%), Gaps = 109/1346 (8%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G +
Sbjct: 410 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 469
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I ++ +L F+ F T +DL ++ Q+ GE L+
Sbjct: 470 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLR 529
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y+ RFS+ ++ D DV +A+F G+R +L R+P + + + E+
Sbjct: 530 DYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPMTVKLMFEKANEYA--- 586
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
K ++ KQS GP +W +N
Sbjct: 587 ----KAEDAVTASKQS---------------------------GP----------SWKQN 605
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWC 341
P G +L A S R + N + N C
Sbjct: 606 KGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTF-----------DKIMNSQC 654
Query: 342 EYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELG 401
+H H +C+ ++ D+ K A D K GD G +
Sbjct: 655 SHHPNSNHVAKDCFVYKQFADQYTKT---ARKNSDEEQSTSRKKDDGDTPAGFQ------ 705
Query: 402 DPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQDFAHV 459
D E + I FGG RK+ + +++VQ + I F D
Sbjct: 706 DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDR 762
Query: 460 IPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-F 517
+ H P+V+ V N ++ +D GS+ +I++ D + + S+LKP G
Sbjct: 763 VVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVI 822
Query: 518 TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 577
G + G + +P FG E + + + V Y+ +LGR L K AV ++
Sbjct: 823 PGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYM 882
Query: 578 TVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPR 634
+K P G + LR D A C S + + +A+E R+ EG
Sbjct: 883 MMKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------ 935
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 694
+ + ++ + + K K + + + D T +N D+FAW +D+PGI
Sbjct: 936 ----EEPATKISKSGESEAKTKKIPL------DPSDPAKT--ANNKDIFAWKPSDMPGIP 983
Query: 695 PKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMV 754
+VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLAN V+V
Sbjct: 984 REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 1043
Query: 755 KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 814
+K G+WRMC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI + S
Sbjct: 1044 RKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLKES 1103
Query: 815 DEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 874
D T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +
Sbjct: 1104 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1163
Query: 875 SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 934
D DL+E F +R ++MKLNPEKC+FG+ GK +GFM++ RGI+ NP+K AIL MK
Sbjct: 1164 DDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNMKP 1223
Query: 935 PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 994
P++ K+VQ+LTG MAALSRF+ G++ PFF LKK FQW E ++AF K+ L
Sbjct: 1224 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTE 1283
Query: 995 LPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 1048
PVL+ P P PL+LY++ T + VSTVL+ +EEG QKV IYFVS L ++ RY
Sbjct: 1284 PPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYP 1343
Query: 1049 KIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 1108
+++K IL T R+L YFQ V + T PL +L + +GR+ W++EL DI +
Sbjct: 1344 QVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISF 1403
Query: 1109 EPRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMI 1164
+PR + Q+L DFVAE T + E T E W + DGS +G+GAG+ + SP
Sbjct: 1404 KPRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGER 1462
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
+ L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+ D +
Sbjct: 1463 LSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNM 1522
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 1284
Y + VR+L + +++ HV R NE AD LA S + V E L P++
Sbjct: 1523 MAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPH 1581
Query: 1285 VE-IKLKAVKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGGELYRR 1341
+ ++ V+ E W E + FL S P++ D R RR + Y + ELY++
Sbjct: 1582 KDTTQVAGTHDVAMVETDWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKK 1640
Query: 1342 GIMSPMLKCVDIKDALGIMAEVHEGV 1367
+ +CV +++ ++ ++H G+
Sbjct: 1641 SPSGILQRCVSLEEGRQLLQDIHSGI 1666
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 664 bits (1714), Expect = 0.0
Identities = 436/1346 (32%), Positives = 659/1346 (48%), Gaps = 109/1346 (8%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G +
Sbjct: 412 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 471
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I ++ +L F+ F T +DL ++ Q+ GE L+
Sbjct: 472 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLR 531
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y+ RFS+ ++ D DV +A+F G+R +L R+P + + + + E+
Sbjct: 532 DYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA--- 588
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
K ++ KQS GP +W +N
Sbjct: 589 ----KAEDAVTASKQS---------------------------GP----------SWKQN 607
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWC 341
P G +L A S R + N + N C
Sbjct: 608 KGTPATGGGGSNNHKDRKRKPAELVATASHSSRQRSRVNTF-----------DKIMNSQC 656
Query: 342 EYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELG 401
+H H +C+ ++ D+ K A D K GD G +
Sbjct: 657 PHHPNSNHVAKDCFVYKQFADQYTKT---ARKNTDEEQSTSRKKDDGDTPAGFQ------ 707
Query: 402 DPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQDFAHV 459
D E + I FGG RK+ + +++VQ + I F D
Sbjct: 708 DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDR 764
Query: 460 IPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-F 517
+ H P+V+ V N ++ +D GS+ +I++ D + + S+LKP G
Sbjct: 765 VVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVI 824
Query: 518 TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 577
G + G + +P FG E + + + V Y+ +LGR L K AV ++
Sbjct: 825 PGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYM 884
Query: 578 TVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPR 634
+K P G + LR D A C S + + +A+E R+ EG
Sbjct: 885 MMKMPGPRGVLS-LRSDVKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------ 937
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 694
+ ++ + + K K + + T+ +N D+FAW +D+PGI
Sbjct: 938 ----EIPATKTSKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIP 985
Query: 695 PKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMV 754
+VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLAN V+V
Sbjct: 986 REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 1045
Query: 755 KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 814
+K G+W MC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI + S
Sbjct: 1046 RKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKES 1105
Query: 815 DEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 874
D T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +
Sbjct: 1106 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1165
Query: 875 SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 934
D DL+E F +R ++MKLNPEKC+FG+ GK LGFM++ RGI+ NP+K AIL MKS
Sbjct: 1166 DDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKS 1225
Query: 935 PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 994
P++ K+VQ+LTG MAALSRF+ G++ PFF LKK F+W E ++AF K+ L
Sbjct: 1226 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPEAQKAFEDFKKLLTE 1285
Query: 995 LPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 1048
PVL+ P P PL+LY++ T + VSTVL+ +EEG QKV IYFVS L ++ RY
Sbjct: 1286 PPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYP 1345
Query: 1049 KIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 1108
+++K IL T R+L YFQ V + T PL +L + +GR+ W++EL DI +
Sbjct: 1346 QVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISF 1405
Query: 1109 EPRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMI 1164
+PR + Q+L DFVAE T + E T E W + DGS +G+GAG+ + SP
Sbjct: 1406 KPRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGER 1464
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
+ L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+ D +
Sbjct: 1465 LSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNM 1524
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 1284
Y + VR+L + +++ HV R NE AD LA S R V E L P++
Sbjct: 1525 MAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDVFVEHLYSPTVPH 1583
Query: 1285 VEIKLKA-VKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGGELYRR 1341
+ A V+ E W E + FL S P++ D R RR + Y L ELY++
Sbjct: 1584 KDATQAAGAHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SKLYVLHEAELYKK 1642
Query: 1342 GIMSPMLKCVDIKDALGIMAEVHEGV 1367
+ +CV +++ ++ ++H G+
Sbjct: 1643 SPSGILQRCVSLEEGRQLLKDIHSGI 1668
>ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultivar-group)]
gi|39546270|emb|CAD39817.3| OSJNBa0079F16.18 [Oryza
sativa (japonica cultivar-group)]
gi|32487832|emb|CAE05063.1| OSJNBa0094P09.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1802
Score = 662 bits (1709), Expect = 0.0
Identities = 432/1346 (32%), Positives = 660/1346 (48%), Gaps = 109/1346 (8%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G
Sbjct: 417 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANY 476
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I ++ +L F+ F T +DL ++ Q+ GE L+
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLR 536
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y+ RFS+ ++ D DV +A+F G+R +L R+P + + + + E+
Sbjct: 537 DYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA--- 593
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
K ++ KQS GP +W N
Sbjct: 594 ----KAEDAVTASKQS---------------------------GP----------SWKPN 612
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWC 341
P G +L A + R + N + N C
Sbjct: 613 KGTPATGGGGSNNHKDRKRKPEELVATATHSSRQRSRVNTF-----------DKIMNSQC 661
Query: 342 EYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELG 401
+H H +C+ ++ ++ K + D K GD G +
Sbjct: 662 PHHPNSNHVAKDCFVYKQFAEQYTKTTRKNS---DEEQSTSRKKDDGDTPAGFQ------ 712
Query: 402 DPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQDFAHV 459
D E + I FGG RK+ + +++VQ + I F D
Sbjct: 713 DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDR 769
Query: 460 IPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-F 517
+ H P+V+ V N ++ +D GS+ +I++ D + + S+LKP G
Sbjct: 770 VVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVI 829
Query: 518 TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 577
G + G + +P FG E + + + V Y+ +LGR L K AV ++
Sbjct: 830 PGLSATPLGQIILPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYM 889
Query: 578 TVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPR 634
+K P G + LR D A C S + + +A+E R+ EG
Sbjct: 890 MMKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------ 942
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 694
+ + ++ + + K K + + +T+ +N D+FAW +D+PGI
Sbjct: 943 ----EVPATKISKSGESEAKTKKIPLDPSDSTKT--------ANNKDIFAWKPSDMPGIP 990
Query: 695 PKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMV 754
+VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLAN V+V
Sbjct: 991 REVIEHSLHVKQDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 1050
Query: 755 KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 814
+K G+WRMC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI + S
Sbjct: 1051 RKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKES 1110
Query: 815 DEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 874
D T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +
Sbjct: 1111 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1170
Query: 875 SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 934
D DL+E F +R ++MKLNPEKC+FG+ GK LGFM++ RGI+ NP+K AIL MK
Sbjct: 1171 DDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKP 1230
Query: 935 PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 994
P++ K+VQ+LTG MAALSRF+ G++ PFF LKK FQW E ++AF K+ L
Sbjct: 1231 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTE 1290
Query: 995 LPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 1048
PVL+ P P PL+LY+A T + VSTVL+ +EEG QKV IYFVS L ++ RY
Sbjct: 1291 PPVLASPYPQEPLLLYVAATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYP 1350
Query: 1049 KIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 1108
+++K IL T R+L YFQ V + T PL +L + +GR+ W++EL DI +
Sbjct: 1351 QVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISF 1410
Query: 1109 EPRGQVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMI 1164
+PR + Q+L DFVAE T T EK + W + DGS +G+GAG+ + SP
Sbjct: 1411 KPRISIKSQALADFVAEWTECQEDTPAEKME-HWTMHFDGSKRLSGTGAGVVLISPTGER 1469
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
+ L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+ D +
Sbjct: 1470 LSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNM 1529
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 1284
Y + VR+L + +++ HV R NE AD LA S + V E L P++
Sbjct: 1530 MAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPH 1588
Query: 1285 VE-IKLKAVKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGGELYRR 1341
+ ++ V+ E W E + FL S P++ D R RR + Y + ELY++
Sbjct: 1589 KDTTQVAGTHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKK 1647
Query: 1342 GIMSPMLKCVDIKDALGIMAEVHEGV 1367
+ +CV +++ ++ ++H G+
Sbjct: 1648 SPSGILQRCVSLEEGRQLLKDIHSGI 1673
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 660 bits (1703), Expect = 0.0
Identities = 384/994 (38%), Positives = 570/994 (56%), Gaps = 59/994 (5%)
Query: 404 VGECSSIAGGFGGGAISSKARKRYVAAVHSVQESNEGEC--WVNHSPIIFTPQDFA-HVI 460
+G IAGG + K +K ++ V++V C W + +PI FT +D
Sbjct: 574 IGMILPIAGGSSMEFQTKKQKKDHLRLVNNVAVQGPVRCTDW-SRTPITFTEEDLRLESY 632
Query: 461 PHDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGD 520
PH D +V+T V + ++ +D GSSADII+ FD++ L S L+P + L+GF G
Sbjct: 633 PH-TDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESPLIGFGGK 691
Query: 521 RVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVK 580
++ G V +P +FG E + V + V+ YN + GR LNK A +L +K
Sbjct: 692 QIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNKFNAAAHMGYLCMK 751
Query: 581 YPACNGKVGILRVDQNAARECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRD----- 635
PA +G + + + +E A+Y K I + + + P D
Sbjct: 752 IPALHGVITV----HGSQKEARNIEKAIY-----KSFRNINSVDSTQHEASQPPDMPRGK 802
Query: 636 ----DADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVP 691
D ++ + PL+E V DK + I + L+ E+E L+ +L N D+FAW+ D+
Sbjct: 803 TNLADQEETKCIPLQEA----VPDKKVTISATLSREEELELLDVLQKNQDIFAWSAADLQ 858
Query: 692 GIDPKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANV 751
G+ +I H L I P P Q +R+MSEE+ A + E ++L+ A+ IREV YP WLANV
Sbjct: 859 GVSRDIIEHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANV 918
Query: 752 VMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMM 811
V+V K NGK RMC D+T LNK C KDS+PLP +D VD A+G + SL+D +SGY+QI +
Sbjct: 919 VLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWL 978
Query: 812 HPSDEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKS 871
DE +F T YCY MP GLKNAGAT+ R+M K+ Q+ RN+ YVDD++V S
Sbjct: 979 KKEDEGKASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMS 1038
Query: 872 ARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILE 931
R DH DL+E F LR+ +KLNPEKC FG+ GK LG++++S GI NPDK +AI+
Sbjct: 1039 KRKEDHIKDLQETFVNLRSAGLKLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMS 1098
Query: 932 MKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKET 991
M P++ KEVQRLTGR+AAL+RF+ + +++ PFF L++ K +W E +AF +LK
Sbjct: 1099 MAEPSNKKEVQRLTGRIAALNRFISRSAERSLPFFKVLRE-GKTEWGPEQSEAFRQLKNY 1157
Query: 992 LATLPVLSKPTPSVPLVLYLAVTDKAVSTVLLQE----EGKKQKVIYFVSHTLQGAELRY 1047
+AT +++ P P PL+LY+A ++ AVS VL+ E +G Q+ +Y+VS L GA+L Y
Sbjct: 1158 IATNLLVTVPEPDTPLLLYVAASEHAVSGVLVHETSDTKGTVQRPVYYVSEALSGAKLNY 1217
Query: 1048 QKIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQ 1107
+IEK A A+L +R+L+ YFQS ++K+ T PL +L+ + SGR+ W+ ELS++DI
Sbjct: 1218 TEIEKIAYAVLCASRKLKHYFQSHEIKVPTSQPLGDILRNKEASGRIGKWAAELSQFDIT 1277
Query: 1108 YEPRGQVTVQSLIDFVAELTPT---EGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMI 1164
Y PR + Q+L DF+A+ TP+ E + W L DG+ G+GA + +P +
Sbjct: 1278 YVPRTSIKSQALADFMADWTPSNKNEEKVIDQPWTLYTDGAWGQAGAGAAAVLIAPSGLK 1337
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
++ +++ EFKA+NN +EYE LI GL A G + L IK DSQ+V QV+ EY +P+L
Sbjct: 1338 LKFAIRLEFKATNNIAEYEGLILGLNKAKASGAKTLVIKTDSQVVAGQVEKEYLAHNPEL 1397
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGR---LGNYQTVI----QETL 1277
++YL VVR L K ++++PR +N AD LAK A+ G + ++ ETL
Sbjct: 1398 ARYLAVVRGLERRFKGFTLQYIPRAENYEADELAKAAANNTPLPEGTFHQIVTTPATETL 1457
Query: 1278 PRPSIDLVEIKLKAVKSV--SEGEISWMESIKTFLESPPKEDDLNTRTKRREASF--YTL 1333
P KA +SV +E E W ++I L+ DD T KR EA YT
Sbjct: 1458 P-----------KAFRSVLLTESE-DWRQAIADCLKGKTTVDDEAT-AKRMEARARNYTS 1504
Query: 1334 VGGELYRRGIMSPMLKCVDIKDALGIMAEVHEGV 1367
+ G LY++G++ P+LKC+ + ++ E+H G+
Sbjct: 1505 IDGILYKKGVVQPLLKCISQSEGRELLREIHSGM 1538
Score = 80.1 bits (196), Expect = 6e-13
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 13/223 (5%)
Query: 60 PKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRLLPSTFKGMAMQWFIRQPP 119
P + + L FSG++DP + L F + G + V + +G A+ W+ P
Sbjct: 170 PTTYKPITLPKFSGKADPRQFLMSFEAAVASAGGNETVMAKSFVIAAEGDALAWYSMLRP 229
Query: 120 FSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYMARFSKMAVQLEDENP 179
SI ++ +L K L F T DL Q GE L+ Y RF + +
Sbjct: 230 GSIYSWENLRDKILANFQGFAVESLTSTDLFQCRQNQGEALREYFQRFVQTKARAPGVPK 289
Query: 180 DVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIEQD------DQKKQEREEG 233
+V + + GLR G L R M +L +++ + D DQ Q+R+
Sbjct: 290 EVAIEAAIKGLRIGPFAAHLAREKPASMHELYHEFEKYCRSDNDYRKRLEDQNSQKRQSN 349
Query: 234 RKQSQSGGVSQDKSK----AGKETRIAQTPRVPRPGPYQNSKP 272
+ SQ +S+D+ + AG + + P+ RP +N++P
Sbjct: 350 DRNSQKKDLSRDERRPQREAGGQMMNIEQPKNDRP---ENNRP 389
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 658 bits (1698), Expect = 0.0
Identities = 428/1346 (31%), Positives = 660/1346 (48%), Gaps = 109/1346 (8%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G
Sbjct: 417 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANY 476
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I+++ +L F+ F T +DL ++ Q+ GE L+
Sbjct: 477 LPVALADSARSWLHGLPRGTIESWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLR 536
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y+ RFS+ ++ D DV +A+F G+R +L R+P + + + + E+
Sbjct: 537 DYIRRFSEQRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYA--- 593
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
K ++ KQS GP +W N
Sbjct: 594 ----KAEDAVTASKQS---------------------------GP----------SWKPN 612
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWC 341
P G +L A + R + N + N C
Sbjct: 613 KGTPATGGGGSNNHKDRKRKPEELVATATHSSRQRSRVNTF-----------DKIMNSQC 661
Query: 342 EYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELG 401
+H H +C+ ++ ++ K + D K GD G +
Sbjct: 662 PHHPNSNHVAKDCFVYKQFAEQYTKTTRKNS---DEEQSTSRKKDDGDTPAGFQ------ 712
Query: 402 DPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQDFAHV 459
D E + I FGG RK+ + +++VQ + I F D
Sbjct: 713 DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDR 769
Query: 460 IPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-F 517
+ H P+V+ V N ++ +D GS+ +I++ D + + S+LKP G
Sbjct: 770 VVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVI 829
Query: 518 TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 577
G + G + +P FG E + + + V Y+ +LGR L K AV ++
Sbjct: 830 PGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYM 889
Query: 578 TVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPR 634
+K P G + LR D A C S + + +A+E R+ EG
Sbjct: 890 MMKLPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------ 942
Query: 635 DDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 694
+ + ++ + + K K + + +T+ +N D+FAW +D+PGI
Sbjct: 943 ----EVPATKISKSGESEAKTKKIPLDPSDSTKT--------ANNKDIFAWKPSDMPGIP 990
Query: 695 PKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMV 754
+VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLAN V+V
Sbjct: 991 REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 1050
Query: 755 KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 814
+K G+WRMC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI + S
Sbjct: 1051 RKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKES 1110
Query: 815 DEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 874
D T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +
Sbjct: 1111 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1170
Query: 875 SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 934
D DL+E F +R ++MKLNPEKC+FG+ GK LGFM++ RGI+ NP+K AIL MK
Sbjct: 1171 DDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKP 1230
Query: 935 PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 994
P++ K+VQ+LTG MAALSRF+ G++ PFF LKK F W E ++AF K+ L
Sbjct: 1231 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPEAQKAFEDFKKLLTE 1290
Query: 995 LPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 1048
PVL+ P P PL+LY++ T + VSTVL+ +E+G QKV IYFVS L ++ RY
Sbjct: 1291 PPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIYFVSEVLADSKTRYP 1350
Query: 1049 KIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 1108
+++K IL T R+L YFQ V + T PL +L + +GR+ W++EL DI +
Sbjct: 1351 QVQKLLYGILITTRKLSHYFQGHLVTVVTSFPLGDILHNREANGRIAKWALELMSLDISF 1410
Query: 1109 EPRGQVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMI 1164
+PR + Q+L DFVAE T T EK + W + DGS +G+GAG+ + SP
Sbjct: 1411 KPRISIKSQALADFVAEWTECQEDTPAEKVE-HWTMHFDGSKRLSGTGAGVVLISPTGER 1469
Query: 1165 IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 1224
+ L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+ D +
Sbjct: 1470 LSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNM 1529
Query: 1225 SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 1284
Y + VR+L + +++ HV R N+ AD LA S + V E L P++
Sbjct: 1530 MAYRQEVRKLEDKFDGLELSHVLRHNNKAADRLANFGSKREVAP-SDVFVEHLYAPTVPH 1588
Query: 1285 VE-IKLKAVKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGGELYRR 1341
+ ++ V+ E W E + FL S P++ D R RR + Y + ELY++
Sbjct: 1589 KDTTQVAGTHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SRLYVMHEAELYKK 1647
Query: 1342 GIMSPMLKCVDIKDALGIMAEVHEGV 1367
+ +CV +++ ++ ++H G+
Sbjct: 1648 SPSGILQRCVSLEEGRQLLKDIHSGI 1673
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 658 bits (1698), Expect = 0.0
Identities = 376/985 (38%), Positives = 564/985 (57%), Gaps = 34/985 (3%)
Query: 410 IAGGFGGGAISSKARKRYVAAVH--SVQESNEGECWVNHSPIIFTPQDFAHVIPHDNDPI 467
I GG + K +K V VQ W +H PI F+ +D ND +
Sbjct: 20 ITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRW-SHIPITFSQEDLQLKDYPHNDAM 78
Query: 468 VVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVSVRGY 527
V++ + ++ V +D GS+ADII+ AF ++ E + L GF G ++ G
Sbjct: 79 VISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPEDKIHDATHPLCGFGGRQIVALGK 138
Query: 528 VEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGK 587
+ + FG + QV + ++ YN ++GR TLN A++ A+L +K P+ G
Sbjct: 139 ITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKIPSDQGP 198
Query: 588 VGILRVDQNAAREC---YLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQP 644
+ I Q AAR + S A++ A E Q F + AD +P
Sbjct: 199 IAI-HGSQEAARRAEGNWTDSKAIHNIDGA-------EACEQYKFRREKAASADQPKPML 250
Query: 645 LEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAI 704
L E + ++ + +GS L+ EQE LI L +N D+FAW+ ND+ G++ VI H L +
Sbjct: 251 LCE----DIAEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNV 306
Query: 705 RPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMC 764
P P Q R+MS++K + + E ++L+ A IREV+YP WLAN VMVKKANGKWRMC
Sbjct: 307 DPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMC 366
Query: 765 TDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTN 824
D+T LNK CPKD +PLP +D LVD A+ +EL+SL+D YSGY+QI M DE T+F+T
Sbjct: 367 IDFTDLNKACPKDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITP 426
Query: 825 QANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEA 884
YCY MP GLKNAG ++ R+ K+ Q+GRN+ YVDD+IVKS + +H DL+E
Sbjct: 427 SGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQET 486
Query: 885 FDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRL 944
F R +KLNPEKC FG++ GKFLG +++++GIE NP K AIL M+ PT+ K QRL
Sbjct: 487 FASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRL 546
Query: 945 TGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPS 1004
TGR+A+L+RF+ + ++ PFF LK FQW ++AF +LK+ L L L+ P
Sbjct: 547 TGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTTLTPPMSG 606
Query: 1005 VPLVLYLAVTDKAVSTVLLQE----EGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKT 1060
PL+LY+A + AVS L+QE + K+Q IYFVS L ++ Y ++EK A+L
Sbjct: 607 APLLLYVAASHSAVSAALVQEKLDGQVKRQAPIYFVSEVLSLSKKNYTELEKVLYAVLMA 666
Query: 1061 ARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLI 1120
+R+LR YFQ++ + + + PL+ +++ + +GR+ W+ EL+E+ I+Y R + Q+L
Sbjct: 667 SRKLRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSIQSQALA 726
Query: 1121 DFVAELTP----TEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKAS 1176
DF+A+ TP E K W + DGS G+GA + SP K+ I + K +F +
Sbjct: 727 DFIADWTPGAQEEETNKDNEAWTVFCDGSWGTFGAGAAAVLVSPSKVKICYAAKLDFNCT 786
Query: 1177 NNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMM 1236
NN +EYEAL+ GLR +G+++ +K DSQ+V + + KDP+L KYL++VRR+
Sbjct: 787 NNIAEYEALVLGLRKLKAMGIRRAILKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRIEA 846
Query: 1237 EVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVEIKLKAVKSVS 1296
+ ++++PRGQNE AD+LAK A+ G L V ET+ PS++L+E + + V
Sbjct: 847 SFEGFSVKNIPRGQNEHADLLAKSAAQG-LPLPSDVFFETIKAPSVELLERAVLNISPVF 905
Query: 1297 EGEISWMESIKTFLESPPKEDD--LNTRTKRREASFYTLVGGELYRRGIMSPMLKCVDIK 1354
+ W I ++L+ DD N R + R A Y ++ GELY+ G+ +P+LKC+
Sbjct: 906 SED--WRTEIISYLQGKFLSDDEAYNKRIEAR-ARPYVMIEGELYKHGVCAPLLKCLSRT 962
Query: 1355 DALGIMAEVHEGVF*SY--RRAILG 1377
+ + +M E+H G+ S+ R +LG
Sbjct: 963 EGIELMKEIHAGLCGSHIGSRPLLG 987
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 651 bits (1680), Expect = 0.0
Identities = 370/982 (37%), Positives = 559/982 (56%), Gaps = 28/982 (2%)
Query: 410 IAGGFGGGAISSKARKRYVAAVH--SVQESNEGECWVNHSPIIFTPQDFAHVIPHDNDPI 467
I GG + K +K V VQ W +H PI F+ +D ND +
Sbjct: 20 ITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRW-SHIPITFSQEDLQLKDYPHNDAM 78
Query: 468 VVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVSVRGY 527
V++ + ++ V +D GS+ADII+ AF ++ E + L GF G ++ G
Sbjct: 79 VISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELEDKIHDATHPLCGFGGRQIVALGK 138
Query: 528 VEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGK 587
+ + FG + QV + ++ YN ++GR TLN A++ A+L +K P+ G
Sbjct: 139 ITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMKMPSDQGP 198
Query: 588 VGILRVDQNAARECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQPLEE 647
+ I Q AAR A +K H I E + A +P+P+
Sbjct: 199 IAI-HGSQEAARR------AEGNWTDSKAIHNIDGAEACEXYKFRREKAASADQPKPMLL 251
Query: 648 TKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPG 707
+ + ++ + +GS L+ EQE LI L +N D+FAW+ ND+ G++ VI H L + P
Sbjct: 252 CEDIA--EQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPS 309
Query: 708 ATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDY 767
P Q R+MS++K + + E ++L+ A IREV+YP WLAN VMVKKANGKWRMC D+
Sbjct: 310 FRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDF 369
Query: 768 TSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTNQAN 827
T LNK CPKD +PLP +D LVD + +EL+SL+D YSGY+QI M DE T+F+T
Sbjct: 370 TDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDEPKTSFITPSGT 429
Query: 828 YCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQ 887
YCY MP GLKNAG ++ R+ K+ Q+GRN+ YVDD+IVKS + +H DL+E F
Sbjct: 430 YCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFAS 489
Query: 888 LRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGR 947
R +KLNPEKC FG++ GKFLG +++++GIE NP K AIL M+ PT+ K QRLTGR
Sbjct: 490 FRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGR 549
Query: 948 MAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPSVPL 1007
+A+L+RF+ + ++ PFF LK FQW ++AF +LK+ L L L+ P P PL
Sbjct: 550 LASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTALTPPMPGAPL 609
Query: 1008 VLYLAVTDKAVSTVLLQE----EGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARR 1063
+LY+A + AVS L+QE + +KQ +YFVS L ++ Y ++EK +L +R+
Sbjct: 610 LLYVAASHSAVSAALVQEKLDGQTRKQVPVYFVSEVLSISKKNYTELEKVLYVVLMASRK 669
Query: 1064 LRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFV 1123
LR YFQ++ + + + PL+ +++ + +GR+ W+ EL+E+ I+Y R + Q+L DF+
Sbjct: 670 LRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSIQSQALADFI 729
Query: 1124 AELTP----TEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQ 1179
A+ TP E K W + DGS G+GA + SP K+ K +F +NN
Sbjct: 730 ADWTPGAQEEEANKDTEAWTVFCDGSWGTFGAGAAAVLVSPSKVKTCYVAKLDFSCTNNI 789
Query: 1180 SEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVK 1239
+EYEAL+ GLR +G+++ +K DSQ+V + + KDP+L KYL++VRR+ +
Sbjct: 790 AEYEALLLGLRKLKAMGIRRAVLKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRVEASFE 849
Query: 1240 EIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVEIKLKAVKSVSEGE 1299
++++PRGQNE AD+LAK A+ G L V ET+ PS++L+E + + V +
Sbjct: 850 GFSVKNIPRGQNEHADLLAKSAAQG-LPLPSDVFFETIKAPSVELLERAVLNISPVYSED 908
Query: 1300 ISWMESIKTFLESPPKEDD--LNTRTKRREASFYTLVGGELYRRGIMSPMLKCVDIKDAL 1357
W I ++L+ DD N R + R A Y ++ GELY+ G+ +P+LKC+ + +
Sbjct: 909 --WRTEIISYLQGKFLSDDEAYNRRIEAR-ARPYVMIEGELYKHGVCAPLLKCLSRTEGI 965
Query: 1358 GIMAEVHEGVF*SY--RRAILG 1377
+M E+H G+ S+ R +LG
Sbjct: 966 ELMKEIHAGLCGSHIGSRPLLG 987
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 649 bits (1675), Expect = 0.0
Identities = 424/1320 (32%), Positives = 648/1320 (48%), Gaps = 109/1320 (8%)
Query: 68 LDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRLLPSTFKGMAMQWFIRQPPFSIDNFTD 127
++ + G ++P L + + G LP A W P +I ++ +
Sbjct: 182 IEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADSARSWLHGLPRGTIRSWAE 241
Query: 128 LSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYMARFSKMAVQLEDENPDVCLASFK 187
L F+ F T +DL ++ Q+ GE L+ Y+ RFS+ ++ D DV +A+F
Sbjct: 242 LRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVIIAAFT 301
Query: 188 NGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIEQDDQKKQEREEGRKQSQSGGVSQDKS 247
G+R +L R+P + + + + E+ K ++ KQS
Sbjct: 302 KGIRHEELVGKFGRKPPRTVKLMFEKANEYA-------KAEDAVTASKQS---------- 344
Query: 248 KAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRNPQGPPAATAGQTGASPAPVPLTKLNA 307
GP +W N P G +L A
Sbjct: 345 -----------------GP----------SWKPNKGTPATGGGGSNNHKDRKRKPEELVA 377
Query: 308 PLSTILRAVGQTNVVQYPPPPRRPPANVDTNRWCEYHKALGHTTDNCWNLRREIDRLIKA 367
+ R + N + N C +H H +C+ ++ ++ K
Sbjct: 378 TATHSSRQRSRVNTF-----------DKIMNSQCPHHPNSNHVAKDCFVYKQFAEQYTKT 426
Query: 368 GHLANFVKDTAAPEVAKITQGDKGKGKEIVEELGDPVGECSSIAGGFGGGAISSKARKRY 427
+ D K GD G + D E + I FGG RK+
Sbjct: 427 TRKNS---DEEQSTSRKKDDGDTPAGFQ------DHRKELNHI---FGGPLAYESKRKQK 474
Query: 428 VAA--VHSVQESNEGECWVNHSPIIFTPQDFAHVIPHDND-PIVVTIRVNNYVTKKVFLD 484
+ +++VQ + I F D + H P+V+ V N ++ +D
Sbjct: 475 LTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLID 534
Query: 485 QGSSADIIYGDAFDRLGLKESDLKPYKGTLVG-FTGDRVSVRGYVEIPTAFGEGEFVKKF 543
GS+ +I++ D + + S+LKP G G + G + +P FG E +
Sbjct: 535 GGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTE 594
Query: 544 QVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQNAARECYL 603
+ + V Y+ +LGR L K AV ++ +K P +V LR D A C
Sbjct: 595 NISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPR-RVLSLRSDIKQAVTCDK 653
Query: 604 RSVALYGRK---AAKESHRITEIFPQEGFSLDPRDDADDFRPQPLEETKQVQVKDKFLKI 660
S + + +A+E R+ EG + + ++ + + K K + +
Sbjct: 654 ESCDMAQTREMASAREDIRLAVATASEG----------EVPATKISKSGESEAKTKKIPL 703
Query: 661 GSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPGATPVIQPRRRMSE 720
+T+ +N D+FAW +D+PGI +VI H L ++ A P+ Q RR +
Sbjct: 704 DPSDSTKT--------ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFVQ 755
Query: 721 EKNKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDSYP 780
++ A++ E KL+ A FI+EV +P WLAN V+V+K G+WRMC DYT LNK CPKD +
Sbjct: 756 DRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFG 815
Query: 781 LPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTNQANYCYKTMPFGLKNA 840
LP +D++VD +G ELLS +D YSGY+QI + SD T+F+T YCY TMPFGLKNA
Sbjct: 816 LPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPIGAYCYVTMPFGLKNA 875
Query: 841 GATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKC 900
GATYQR++ + FS Q+GRN+E YVDD+++K+ + D DL+E F +R ++MKLNPEKC
Sbjct: 876 GATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQKDDLISDLEETFASIRAFRMKLNPEKC 935
Query: 901 SFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMAGD 960
+FG+ GK LGFM++ RGI+ NP+K AIL MK P++ K+VQ+LTG MAALSRF+ G+
Sbjct: 936 TFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGE 995
Query: 961 KAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPSVPLVLYLAVTDKAVST 1020
+ PFF LKK FQW E ++AF K+ L PVL+ P P PL+LY++ T + VST
Sbjct: 996 RGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTEPPVLASPHPQEPLLLYVSATSQVVST 1055
Query: 1021 VLL---QEEGKKQKV---IYFVSHTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVK 1074
VL+ +EEG QKV IYFVS L ++ RY +++K IL T R+L YFQ V
Sbjct: 1056 VLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVT 1115
Query: 1075 IKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFVAELT----PTE 1130
+ T PL +L + +GR+ W++EL DI ++PR + Q+L DFVAE T T
Sbjct: 1116 VVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTP 1175
Query: 1131 GEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLR 1190
EK + W + DGS +G+GAG+ + SP + L F AS+N +EYEAL+ GLR
Sbjct: 1176 AEKME-HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLR 1234
Query: 1191 LAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQ 1250
+AI LG+++L ++GDSQLVV QV E+ D + Y + VR+L + +++ HV R
Sbjct: 1235 IAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHN 1294
Query: 1251 NERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVE-IKLKAVKSVSEGEISWMESIKTF 1309
NE AD LA S + V E L P++ + ++ V+ E W E F
Sbjct: 1295 NEAADRLANFGSKREVAP-SDVFVEHLYTPTVPHKDTTQIAGTHDVALVEADWREPFIRF 1353
Query: 1310 LESP--PKEDDLNTRTKRREASFYTLVGGELYRRGIMSPMLKCVDIKDALGIMAEVHEGV 1367
L S P++ D R RR + Y + ELY++ + +CV +++ ++ ++H G+
Sbjct: 1354 LTSQELPQDKDEAERISRR-SKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1412
>gb|AAK50400.1| Putative retroelement [Oryza sativa]
Length = 1291
Score = 627 bits (1616), Expect = e-177
Identities = 379/1185 (31%), Positives = 604/1185 (49%), Gaps = 100/1185 (8%)
Query: 49 PFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRLLPSTFKG 108
P I IP + + +SGE+DP E L + + + + K +++ G
Sbjct: 49 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 108
Query: 109 MAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYMARFS 168
+A W+ P SI ++ L F+ F T L+ I Q+PGE ++ YM RFS
Sbjct: 109 IARSWYFNLPDNSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 168
Query: 169 KMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIEQDDQKKQ 228
+ Q++D + + GL G+L R + + + L + F E+D +++Q
Sbjct: 169 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPLTLEHLLCIIDGFARGEEDSKRRQ 228
Query: 229 EREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRNPQGPPAA 288
Q++ S ++A + ++A+ P P + S+P Q R Q P
Sbjct: 229 AI-----QAEYDKASITAAQAQAQVQVAEPP----PLSVRQSQPAIQGQPPRQSQAPITW 279
Query: 289 TAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPAN--VDTNRWCEYHKA 346
+T + V + L A +N Q PA+ V + +C +H
Sbjct: 280 RKFRTDRAGKAVMAVEEVQALRKEFDAQQASNHQQ--------PAHKKVRKDLYCAFHGR 331
Query: 347 LGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEIVEELGDPVGE 406
HTT+ C N+R+ G+ N P+ + + E V+E P +
Sbjct: 332 SSHTTEQCRNIRQR-------GNAQN-----PRPQQGTTVEAPR----EAVQEQTPPAEQ 375
Query: 407 CSSIAGGFGGGAISSKARKRYVAAVHSVQESNEGECWVNHSPIIFTPQDFAHVIPHDNDP 466
+ +S + +K VHS+ + EG + I F P+D VI DP
Sbjct: 376 RQDVH------QLSKRQKKMQTRMVHSITSAGEGAPQYLNQLISFGPEDAEGVIFPHQDP 429
Query: 467 IVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVSVRG 526
+V++ + + +++ +D GSSAD+I+ +A+ ++GL L P +L GF G+ V V G
Sbjct: 430 LVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPVSLRGFGGEAVQVLG 489
Query: 527 YVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNG 586
+ AFG GE ++ Q+ + V+ NYN + GR TLNK A+ +L +K P
Sbjct: 490 QTLLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTA 549
Query: 587 KVGILRVDQNAARECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQPLE 646
+ + + +A + L + E H + P +P P
Sbjct: 550 VIVVKGLQPSATSKGDLAIIHRAVHSVETEPHERLKHMP---------------KPTPHS 594
Query: 647 ETKQVQVKD----KFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKL 702
+ VQ+ D K + +G + + + ++ +L N+D+FAW+ ++V G+ +I H L
Sbjct: 595 KMTTVQIDDVDPTKLVSLGGDMGEGELESILEVLKKNIDIFAWSPDEVGGVPANLIMHHL 654
Query: 703 AIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWR 762
A++P P Q R+MS ++ +A + E +KL++A I+E+ +P WLAN V+V+K+NGKWR
Sbjct: 655 AVKPDIKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEINHPEWLANPVLVRKSNGKWR 714
Query: 763 MCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFM 822
MC D+T LNK CPKD +PLP +D+LVD + EL+S +DAYSGY+QI M+P D T+F+
Sbjct: 715 MCVDFTDLNKACPKDDFPLPRIDQLVDSTARCELMSFLDAYSGYHQIHMNPLDIPKTSFI 774
Query: 823 TNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLK 882
T +C+ MPFGL+NAGAT+ L+ K+ KQ+GRN+E Y+DD++VKS +A DH DL+
Sbjct: 775 TPFGTFCHLRMPFGLRNAGATFATLVYKVLGKQLGRNVEAYIDDIVVKSRKAFDHAIDLQ 834
Query: 883 EAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQ 942
E FD LR +KLNPEKC FG++ G LGF+++ RGIE NP+K AI +MK P+S
Sbjct: 835 ETFDSLRAAGIKLNPEKCVFGVRAGNLLGFLVSERGIEANPEKIDAIQQMKPPSST---- 890
Query: 943 RLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPT 1002
L+ KF WT EC+ AF +LK+ L + P L P
Sbjct: 891 --------------------------LRGAGKFNWTPECQAAFDELKQYLQSSPALISPP 924
Query: 1003 PSVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTAR 1062
P L+LYLA + AVS L+QE QK +YF+S LQGA+ RY ++EK A A++ +
Sbjct: 925 PGSELLLYLAASPVAVSAALVQETEFGQKPVYFISEVLQGAKTRYIEMEKLAYALVMVSH 984
Query: 1063 RLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDF 1122
+L+ YFQ+ +V + + PL ++L+ +++GRL W+ ELS +D+ + R + Q L DF
Sbjct: 985 KLKHYFQAHKVIVPSQYPLGEILRGKEVTGRLSKWAAELSPFDLHFIARFAIKSQVLADF 1044
Query: 1123 VAELTPTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEY 1182
VAE TP L+ D +G + SP+ + I + + +F +NN +EY
Sbjct: 1045 VAEWTP----------ALATDREPTEQRAGIAAALFSPNGVPIRYAARLQFDTTNNATEY 1094
Query: 1183 EALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKY 1227
EA++ GLR A LGVQ+L I+ DS+LV V ++ K+ ++ ++
Sbjct: 1095 EAVLLGLRKAKALGVQRLLIRTDSKLVAGHVDKSFEAKEERMKRW 1139
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 621 bits (1602), Expect = e-176
Identities = 420/1351 (31%), Positives = 646/1351 (47%), Gaps = 119/1351 (8%)
Query: 42 EDVVEFQPFVPAITRVDIPKHLQTMALDAFSGESDPMEHLRYFNTKMVIGGATDAVKCRL 101
+D+ F + RVD P + ++ + G ++P L + + G
Sbjct: 417 DDLDGVAAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANY 476
Query: 102 LPSTFKGMAMQWFIRQPPFSIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLK 161
LP A W P +I ++ +L F+ F ++PG +
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGT-------------FERPGTQFD 523
Query: 162 TYMARFSKMAVQLEDENPDVCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIE 221
Y VQ ++G+ RD RR ++ + + I+
Sbjct: 524 LYNV------VQ-----------------KSGESLRDYIRRFSEQRNKISDITDDVIIAA 560
Query: 222 QDDQKKQEREEGRKQSQSGGVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRN 281
+ E G K G++ + Y ++ +
Sbjct: 561 FTKGIRHEELVG--------------KFGRKPPRTVKLMFEKANEYAKAEDAVTASKQSG 606
Query: 282 PQGPPAATAGQTGASPAPVPLTKLNAPLSTILRAVGQTNVVQYPPPPRRPPANVDT---- 337
P P TG + + P + A+ + R + V+T
Sbjct: 607 PSWKPKKDTPATGGGGSNNHKDRKRKPEELVATAIHSS----------RQRSRVNTFDKI 656
Query: 338 -NRWCEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTAAPEVAKITQGDKGKGKEI 396
N C +H H +C+ ++ ++ K + D K GD G +
Sbjct: 657 MNSQCPHHPNSNHVAKDCFVYKQFAEQYTKTTRKNS---DEEQSTSRKKDDGDTPVGFQ- 712
Query: 397 VEELGDPVGECSSIAGGFGGGAISSKARKRYVAA--VHSVQESNEGECWVNHSPIIFTPQ 454
D E + I FGG RK+ + +++VQ + I F
Sbjct: 713 -----DHRKELNHI---FGGPLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRS 764
Query: 455 DFAHVIPHDND-PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGT 513
D + H P+V+ V N ++ +D GS+ +I++ D + + S+LKP
Sbjct: 765 DHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAP 824
Query: 514 LVG-FTGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVI 572
G G + G + +P FG E + + + V Y+ +LGR L K AV
Sbjct: 825 FHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVP 884
Query: 573 STAHLTVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGF 629
++ +K P G + LR D A C S + + +A+E R+ EG
Sbjct: 885 HYTYMMMKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG- 942
Query: 630 SLDPRDDADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTIND 689
+ ++ + + K K + + T+ +N D+FAW +D
Sbjct: 943 ---------EVPATKTSKSGESEAKTKKIPLDPSNPTKT--------ANNKDIFAWKPSD 985
Query: 690 VPGIDPKVITHKLAIRPGATPVIQPRRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLA 749
+PGI +VI H L ++ A P+ Q RR ++++ A++ E KL+ A FI+EV +P WLA
Sbjct: 986 MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVHHPDWLA 1045
Query: 750 NVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQI 809
N V+V+K G+WRMC DYT LNK CPKD + LP +D++VD +G ELLS +D YSGY+QI
Sbjct: 1046 NPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQI 1105
Query: 810 MMHPSDEESTTFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIV 869
+ SD T+F+T YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++V
Sbjct: 1106 RLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVV 1165
Query: 870 KSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAI 929
K+ + D DL+E F +R ++MKLNPEKC+FG+ GK LGFM++ RGI+ NP+K AI
Sbjct: 1166 KTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAI 1225
Query: 930 LEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLK 989
L MK P++ K+VQ+LTG MAALSRF+ G++ PFF LKK FQW E ++AF K
Sbjct: 1226 LNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFK 1285
Query: 990 ETLATLPVLSKPTPSVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGA 1043
+ L PVL+ P P PL+LY++ T + VSTVL+ +EEG QKV IYFVS L +
Sbjct: 1286 KLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADS 1345
Query: 1044 ELRYQKIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQKPDLSGRLVSWSVELSE 1103
+ RY +++K IL T R+L YFQ V + T PL +L + +GR+ W++EL
Sbjct: 1346 KTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMS 1405
Query: 1104 YDIQYEPRGQVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIES 1159
DI ++PR + Q+L DFVAE T T EK + W + DGS +G+GAG+ + S
Sbjct: 1406 LDISFKPRISIKSQALADFVAEWTECQEDTPAEKME-HWTMHFDGSKRLSGTGAGVVLIS 1464
Query: 1160 PDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQV 1219
P + L F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV E+
Sbjct: 1465 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1524
Query: 1220 KDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPR 1279
D + Y + VR+L + +++ HV R NE AD LA S + V E L
Sbjct: 1525 LDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYT 1583
Query: 1280 PSIDLVE-IKLKAVKSVSEGEISWMESIKTFLESP--PKEDDLNTRTKRREASFYTLVGG 1336
P++ + ++ V+ E W E + FL S P++ D R RR + Y +
Sbjct: 1584 PTVPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEA 1642
Query: 1337 ELYRRGIMSPMLKCVDIKDALGIMAEVHEGV 1367
ELY++ + +CV +++ ++ ++H G+
Sbjct: 1643 ELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1673
>ref|XP_470677.1| putative GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
gi|28927675|gb|AAO62321.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1665
Score = 621 bits (1602), Expect = e-176
Identities = 384/1054 (36%), Positives = 567/1054 (53%), Gaps = 76/1054 (7%)
Query: 314 RAVGQTNVVQYPPPPRRP-PANVDTNR-WCEYHKALGHTTDNCWNLRREIDRLIKAGHLA 371
+A + +Y PP+RP P + DT + WC HK H+ ++C ++ +++ H+A
Sbjct: 347 KAQAEVLAAEYANPPKRPDPQSNDTKKSWCPIHKTDRHSLEDCLVFKKSLEK-----HMA 401
Query: 372 NFVKDTAAPEVAKITQGDKGKGKEIVEELGDPVGECSSIAGGFGGGAISSKAR--KRYVA 429
F K V + + E D S I FGG S R K+
Sbjct: 402 -FEK---GKRVCVVKTNKETTPHEPDSAYPDSDLHVSHI---FGGSTTYSSKREYKKVER 454
Query: 430 AVHSVQESNEGECWVNHSPIIFTPQDF--AHVIPHDNDPIVVTIRVNNYVTKKVFLDQGS 487
V S + + + I F+ +D VIP PI V + N +V +D GS
Sbjct: 455 EVCSTWQGAAPKMKWSEQKIEFSEEDHPKTAVIP-GRYPIAVEPTIRNIKVARVLIDGGS 513
Query: 488 SADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVS-VRGYVEIPTAFGEGEFVKKFQVK 546
S ++++ D +G+ +++L P G T S G + +P FG+ + Q+
Sbjct: 514 SINLLFASTLDAMGIPQNELTPTDQPFHGITPQSSSRPLGKITLPVTFGQANNFRTEQIT 573
Query: 547 YLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQNAARECYLRSV 606
+ V YN ++GR L K A A+ +K P G + I + + +C RS+
Sbjct: 574 FDVAEFDTAYNAIIGRTALAKFMAASHYAYQMLKMPGPKGTITI-QGNTKLVVQCDKRSL 632
Query: 607 ALYGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQPLEETKQVQVKDKFLKIGSGLTT 666
+ E P + +P P+ + +T + D +KI
Sbjct: 633 DM------------VEQTPSPPATTEP--------PKKVTKTNKTPKPDGAIKI------ 666
Query: 667 EQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPGATPVIQPRRRMSEEKNKAV 726
+ L N D T++D+PG+ +VI HKL +RP A PV Q RR + ++ +A+
Sbjct: 667 ------VPLSSANPDK---TLSDMPGVPREVIEHKLMVRPDAKPVKQRLRRFAPDRKQAI 717
Query: 727 QLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDK 786
+ E +KL+KA FIREV + WLAN VMV+KANGKWRMC D+T LNK CPKD +PLP +D+
Sbjct: 718 REELDKLLKAGFIREVLHLEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPLPRIDQ 777
Query: 787 LVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTNQANYCYKTMPFGLKNAGATYQR 846
LVD +G ELLS +DAYSGY+QI M DEE F+T +CY MPFGL AG T+QR
Sbjct: 778 LVDSTAGCELLSFLDAYSGYHQISMAKEDEEKIAFITPFGVFCYVKMPFGLITAGNTFQR 837
Query: 847 LMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQG 906
+ S Q+G N+E YVDD++VK DL+E FD LR Y++ LNPEKC+FG+
Sbjct: 838 TVQGALSNQLGNNVEAYVDDIVVKIKTGDSLIDDLRETFDNLRRYRLMLNPEKCTFGVPS 897
Query: 907 GKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFF 966
GK LGF+++ RGIE NP+K +AI MKSPT +KEVQ+LTG MAALSRF+ G++ FF
Sbjct: 898 GKLLGFLVSGRGIEANPEKIKAIENMKSPTRLKEVQKLTGCMAALSRFIARMGERGQLFF 957
Query: 967 TCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPSVPLVLYLAVTDKAVSTVLLQEE 1026
LKK KF WT+E E+AF LK L+ PVL P + L LY+ T +VSTV++ E
Sbjct: 958 ALLKKQDKFVWTQEAEKAFIALKRYLSNSPVLVAPQTNEELFLYIVATPHSVSTVIVVER 1017
Query: 1027 GKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVKIKTDVPLRQVLQ 1086
K Q+ +Y+VS L A+ RY +I+K A++ T+R+LR YFQ+ +V + + PL +V++
Sbjct: 1018 EKVQRPVYYVSEALHDAKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVSSFPLGEVVR 1077
Query: 1087 KPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFVAELT-PTEGEKTQGE---WVLSV 1142
D+ GR+ W VELS++D+ + PR + Q LIDFVA+ T P QG+ W ++
Sbjct: 1078 NKDVVGRIAKWVVELSQFDVHFVPRTAIKSQVLIDFVADWTMPDNKSDNQGDNATWTMAF 1137
Query: 1143 DGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFI 1202
DG+ N+ G+GAG + SP + ++ F+A+NN +EYE L+AG+R LG ++L +
Sbjct: 1138 DGALNSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRATATLGAKRLIV 1197
Query: 1203 KGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLAS 1262
KGDS+LV QV +Y+ + +LSKYL VR+L I++ HV R N D LA+ AS
Sbjct: 1198 KGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKNFDGIEVRHVYRKDNVEPDDLARRAS 1257
Query: 1263 TGRLGNYQTVIQETLPRPSI------------DLVEIKLKAVKSVSEGEIS--WMESIKT 1308
T + + L +PS+ D+ +A ++V++ E + W +
Sbjct: 1258 RREPLEPGTFL-DMLTKPSVKEVSGEVSPNTPDISSEVTEAERAVADIETTNDWRIPLIK 1316
Query: 1309 FLESPP-KEDDLNTRTKRREASFYTLVGGELYRR 1341
F+ S EDD R+A Y +VG +LY++
Sbjct: 1317 FISSEELPEDDTEAEKITRKAKIYCMVGNDLYKK 1350
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1587
Score = 617 bits (1590), Expect = e-174
Identities = 338/849 (39%), Positives = 494/849 (57%), Gaps = 52/849 (6%)
Query: 419 ISSKARKRYVAAVHSVQESNEGECWVNHSPIIFTPQDFAHVIPHDNDPIVVTIRVNNYVT 478
+S + +K VHS+ EG + I F P+D V+ DP+V++ + +
Sbjct: 553 LSKRQKKMQTRMVHSITSMGEGAPQYLNQLISFGPEDAEGVMFSHQDPLVISAEIAGFEV 612
Query: 479 KKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVSVRGYVEIPTAFGEGE 538
+++ +D GSSAD+I+ +A+ ++ L L P +L GF G+ V V G + AFG GE
Sbjct: 613 RRILVDGGSSADVIFAEAYAKMELPTQTLTPAPASLRGFGGEAVQVLGQALLLIAFGSGE 672
Query: 539 FVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQNAA 598
++ Q+ + V+ NYN + GR TLNK AV +L +K P+ G + + + +AA
Sbjct: 673 NGREEQILFDVVDIPYNYNAIFGRATLNKFEAVSHHNYLKLKMPSPAGVIVVKGLQSSAA 732
Query: 599 RECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQPLEETKQVQVKDKFL 658
+ L + E H + P +P P + +VQ+ D
Sbjct: 733 SKSDLAIINRAVHSVETELHERPKNTP---------------KPTPHGKITKVQIDDA-- 775
Query: 659 KIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPGATPVIQPRRRM 718
D +L N+D+FAW+ ++V G+ +I H LA++P P Q R+M
Sbjct: 776 -----------DPTKLVLKKNIDIFAWSPDEVGGVPADLIMHDLAVKPDIKPRKQKLRKM 824
Query: 719 SEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDS 778
S ++ +A + E +KL++A I+E+ +P WLAN V+V+K+NGKWRMC D+T LNK CPKD
Sbjct: 825 SADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDD 884
Query: 779 YPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTNQANYCYKTMPFGLK 838
+ LP +D+LVD +G EL+S DAYSGY+QI M+P D T+F+T +C+ MPFGL+
Sbjct: 885 FSLPRIDQLVDSTAGCELMSFQDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLR 944
Query: 839 NAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPE 898
NAGAT+ RL+ K+ KQ+GRN+E YVDD++VKS +A DH DL+E FD LR +KLNPE
Sbjct: 945 NAGATFARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDSLRAAGIKLNPE 1004
Query: 899 KCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMA 958
KC FG+ GK LGF+++ RGIEVNP+K AI +MK P+SV EVQ+L GR+AALSRFL A
Sbjct: 1005 KCVFGVCIGKLLGFLVSERGIEVNPEKINAIQQMKPPSSVHEVQKLAGRIAALSRFLSKA 1064
Query: 959 GDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPSVPLVLYLAVTDKAV 1018
++A PFF L+ KF WT EC+ AF +LK+ L + P L P L+LYLA + AV
Sbjct: 1065 AERALPFFKTLRGTGKFNWTPECQAAFDELKQYLQSPPALISPPLGSELLLYLAASPVAV 1124
Query: 1019 STVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVKIKTD 1078
S L+QE QK +YFVS LQGA+ RY ++EK A A+
Sbjct: 1125 SVALVQETEFGQKPVYFVSEALQGAKTRYTEMEKLAYAL--------------------- 1163
Query: 1079 VPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFVAELTPTEGEKTQGE- 1137
PL ++L+ +++GRL W+ ELS +D+ + R + Q L DFVAE TP T+
Sbjct: 1164 YPLGEILRGKEVTGRLSKWAAELSLFDLHFVARSAIKSQVLADFVAEWTPVLAPDTKPAE 1223
Query: 1138 --WVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIEL 1195
WV+ DGS ++ G+G + SP+ + I + + +F +NN +EYEA++ GLR A L
Sbjct: 1224 QFWVMYSDGSWSHRGAGVAAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLGLRKAKAL 1283
Query: 1196 GVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERAD 1255
GV++L I+ DS+LV V ++ K+ + +YLE +R + I +EH+P GQNE AD
Sbjct: 1284 GVRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEAIRSMEKCFTGITVEHLPSGQNEEAD 1343
Query: 1256 VLAKLASTG 1264
L K A+ G
Sbjct: 1344 ALVKSAACG 1352
Score = 55.1 bits (131), Expect = 2e-05
Identities = 41/165 (24%), Positives = 73/165 (43%), Gaps = 9/165 (5%)
Query: 121 SIDNFTDLSTKFLTQFSANKTTKATMFDLISIHQQPGEKLKTYMARFSKMAVQLEDENPD 180
SI ++ L F+ F T L+ I Q+PGE ++ YM RFS+ Q++D
Sbjct: 354 SIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEA 413
Query: 181 VCLASFKNGLRAGDLNRDLTRRPAKDMLDLRARVQEFILIEQDDQKKQEREEGRKQSQSG 240
+ + GL G+L R + + + + L + F E+D +++Q Q++
Sbjct: 414 SVINAALAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDSKRRQ-----AIQAEYD 468
Query: 241 GVSQDKSKAGKETRIAQTPRVPRPGPYQNSKPGFQNTWHRNPQGP 285
S ++A + ++A+ P P + S+P Q R Q P
Sbjct: 469 KASVVAAQAQAQVQVAEPP----PLSIRQSQPAIQGQPPRQGQAP 509
>emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar-group)]
gi|50923259|ref|XP_471990.1| OSJNBb0085H11.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1605
Score = 614 bits (1583), Expect = e-174
Identities = 349/939 (37%), Positives = 539/939 (57%), Gaps = 47/939 (5%)
Query: 419 ISSKARKRYVAAVHSVQESNEGECWVNHSPIIFTPQDFAHVIPHDNDPIVVTIRVNNYVT 478
+S + +K + VH++ + +G + I F +D V+ DP+V++ +
Sbjct: 451 LSKRQKKMRIRTVHNITSAGKGTPQYLNQLISFGSEDAEGVMFPHQDPLVISAERAGFEV 510
Query: 479 KKVFLDQGSSADIIYGDAFDRLGLKESDLKPYKGTLVGFTGDRVSVRGYVEIPTAFGEGE 538
+++ + +GSSAD+I+ +A+ ++GL L P +L GF G+ V V G + A G GE
Sbjct: 511 RRILVGRGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVQVLGQALLLIALGSGE 570
Query: 539 FVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQNAA 598
++ QV + V+ NYN + GR TLNK A+ +L +K P G + + + +AA
Sbjct: 571 NRREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGLTGVIVVKGLQPSAA 630
Query: 599 RECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDDADDFRPQPLEETKQVQVKD--- 655
+ L + +E H + E P + P+ P P + +VQ+ D
Sbjct: 631 SKGDLAIIN-------REVHNV-EAEPYDRPKHAPK-------PTPHSKIIKVQIDDANP 675
Query: 656 -KFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPGATPVIQP 714
K + +G + E+ ++ +L N+D+FAW+ ++V G+ +I H LA++ A P Q
Sbjct: 676 TKLVSLGDDMGEEEAGSILEVLKKNIDIFAWSPDEVGGVWTDLIMHHLAVKLDAKPRKQK 735
Query: 715 RRRMSEEKNKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVC 774
R+MS ++ +AV+ E +KL++A I+E+ +P WLAN V+V+K+ K RMC D+T LNK C
Sbjct: 736 LRKMSADRQEAVKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSTSKKRMCVDFTDLNKAC 795
Query: 775 PKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTTFMTNQANYCYKTMP 834
PKD +PLP +D+LVD +G EL+S +DAYSGY+QI M+P D T F+T +C+ MP
Sbjct: 796 PKDDFPLPRIDQLVDSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFITPFGTFCHLRMP 855
Query: 835 FGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMK 894
FGL+N GAT+ RL+ K+ KQ+GRN+E YVDD++VKS +A DH +L+E FD LR +K
Sbjct: 856 FGLRNTGATFARLVYKVLCKQLGRNVEAYVDDIVVKSRKAFDHVSNLQETFDNLRAAGIK 915
Query: 895 LNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRF 954
LNPEKC FG++ GK LGF+++ +GIE NP K AI +MK P+SV EVQ+L GR+ ALSRF
Sbjct: 916 LNPEKCVFGVRAGKLLGFLVSEKGIEANPKKIDAIQQMKPPSSVHEVQKLAGRIVALSRF 975
Query: 955 LPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPSVPLVLYLAVT 1014
L A ++ PFF L+ + KF WT EC+ AF +LK+ L + L P P L+LYLA +
Sbjct: 976 LSKAAERGLPFFKTLRGSGKFNWTPECQAAFDELKQYLQSPSALISPAPRSKLLLYLAAS 1035
Query: 1015 DKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVK 1074
AVS VL+QE QK +Y VS LQGA+ RY ++EK A A+
Sbjct: 1036 PVAVSAVLVQETEFGQKPVYLVSEALQGAKTRYIEMEKLAYAL----------------- 1078
Query: 1075 IKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFVAELTPT---EG 1131
PL ++L+ +++GRL W+ ELS +D+++ R V Q L D VAE TP E
Sbjct: 1079 ----YPLGEILRDKEVTGRLSKWAAELSPFDLRFVARTAVKSQVLADCVAEWTPVFTPEP 1134
Query: 1132 EKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRL 1191
+ + WV+ +GS ++ G G + SP+ + I + + +F +NN + YEA++ GLR
Sbjct: 1135 KPVEQFWVMCSNGSWSHKGVGIAAVLISPNGVPIRYAARLQFDTTNNAAGYEAVLLGLRK 1194
Query: 1192 AIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQN 1251
A LGV++L I+ DS+LV V ++ K+ + +YLE VR + I +EH+PRG+N
Sbjct: 1195 AKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEAVRSMEKCFTGITVEHLPRGRN 1254
Query: 1252 ERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVEIKLKAVKSV--SEGEISWMESIKTF 1309
E D LAK A++ + + E L PS+ + +++ A+ V SE W
Sbjct: 1255 EEGDALAKSAASSG-PHSPGIFFEVLYAPSVPVDSLEVMAIDQVKLSEDPYDWRTPFVKH 1313
Query: 1310 LESP-PKEDDLNTRTKRREASFYTLVGGELYRRGIMSPM 1347
LE+ ED+ + + A+ Y +V + YR G ++P+
Sbjct: 1314 LETGWLPEDEAEAKRLQLRATKYKMVSAQRYRSGPIAPI 1352
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,827,343,151
Number of Sequences: 2540612
Number of extensions: 124405736
Number of successful extensions: 520828
Number of sequences better than 10.0: 34083
Number of HSP's better than 10.0 without gapping: 2437
Number of HSP's successfully gapped in prelim test: 31648
Number of HSP's that attempted gapping in prelim test: 502393
Number of HSP's gapped (non-prelim): 44902
length of query: 1706
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1564
effective length of database: 502,593,490
effective search space: 786056218360
effective search space used: 786056218360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0046b.4