BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.8
(1555 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 1272 0.0
gb|AAO23078.1| polyprotein [Glycine max] 1149 0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 1090 0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 1048 0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 1035 0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 1027 0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 1026 0.0
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 1020 0.0
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 1017 0.0
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 1016 0.0
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 1006 0.0
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 998 0.0
gb|AAL75999.1| putative polyprotein [Zea mays] 996 0.0
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop... 980 0.0
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon... 976 0.0
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 965 0.0
gb|AAX95226.1| retrotransposon protein, putative, unclassified [... 956 0.0
gb|AAL76001.1| putative gag-pol polyprotein [Zea mays] 945 0.0
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 931 0.0
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon... 871 0.0
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 1272 bits (3291), Expect = 0.0
Identities = 661/1464 (45%), Positives = 926/1464 (63%), Gaps = 73/1464 (4%)
Query: 86 PHEHIHHRSHLRAVTGRRVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMED 145
P + H+ A R VD P + G +A W+ ++E+ F +R E EK+E + +
Sbjct: 213 PPQSAPHQPRFEAAPRRTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTG 272
Query: 146 RALSWFQWWEEQAPVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELL 205
+++W++ +++ + W F++ + RF+P + LL+ +Q G+V EYRE FE L
Sbjct: 273 ASVTWWRCSKDREQIYTWREFQEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEEL 332
Query: 206 AAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKE 265
+ + ++L+ FLNGL ++ ++ +LAD+++ A L+E + R S +
Sbjct: 333 TVDLPHVTSDILESAFLNGLRRSLRDQVVRCRPVNLADIVEIAKLIESQE---RNAVSYQ 389
Query: 266 EDKRGWKEKGGFGGRFSTNS-----GETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEG 320
+ F + ST S TR I + ++ G+G +
Sbjct: 390 VRNQARTNTAPFNNQVSTGSRVVDRAPTRQPFIPSRDTTRASGSGEAR------------ 437
Query: 321 TENTNNEGKIPERKWNGGQRLTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEG 380
N+N C CG++W + H C + + + I
Sbjct: 438 --NSNP----------------------------CRYCGDRWFQGHKCKPQKLKGLAITE 467
Query: 381 EDEEEE-------EEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREIL 433
E EEE E + EE D E KV+ LS + E + +S K++G IG +++
Sbjct: 468 EVEEESPLIEELNEPLTEEEGDPEPAEGFKVMTLSSLNDE--SQEQSMKMRGYIGNTKVV 525
Query: 434 ILVDCGATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQ 493
+LVD GAT NFIS+ LV E V T + V+VG G ++SG C ++ LEVQGI +Q
Sbjct: 526 LLVDSGATCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKCVDIPLEVQGIEFVQ 585
Query: 494 HFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKS 553
+++ LG +LVLG WLA LG AN++DL I W++ + + G+P C+ + +S
Sbjct: 586 DYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLYGDPDLCRGQISMRS 645
Query: 554 IKKTKHDEGEEYFLSYEC-----SEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRA 608
+++ G Y L +EE TA + +LL ++ VFQ P+ LPP R
Sbjct: 646 MERVIKYTGTAYLLELASLFESKKQEEQTA---LQPAIQRLLDQYQGVFQTPQLLPPVRN 702
Query: 609 TDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKD 668
+HAI LQEG+ NIRPYRY F QKNEIEKLV+EML A IIR S SP+SSP +LVKKKD
Sbjct: 703 REHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPSVSPYSSPVLLVKKKD 762
Query: 669 GGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPK 728
GGWRFCVDYRALN+ TIPDK+PIP+I+ELLDE+ A +FSKLDLKSGY QIRM+ D+ K
Sbjct: 763 GGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKSGYFQIRMKLSDVEK 822
Query: 729 TAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHK 788
TAF+THEGHYE+LV+PFGLTNAPSTFQ++MN + RPYLRKFVLVFF DIL+YS ++ H
Sbjct: 823 TAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTHL 882
Query: 789 EHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDV 848
+HL VLQ+L + AN KKC+FG + + YLGH+IS++GVA DP K++ ML WPLPK V
Sbjct: 883 KHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPEKVEAMLQWPLPKSV 942
Query: 849 KGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLA 908
LRGFLG TGYYRRFV+NY ++A+PL LKKN+F W+ AT AF LK ++ +PVL
Sbjct: 943 TELRGFLGFTGYYRRFVKNYGQIARPLRDQLKKNSFDWNEAATSAFQALKAAVSALPVLV 1002
Query: 909 VPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQK 968
+PDFQ+ F +ETDASG G+GAVL Q R +A++S+ S + + +SVYEREL+A+V AV K
Sbjct: 1003 LPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRSVYERELLAIVKAVTK 1062
Query: 969 WRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADAL 1028
W+HYL +FI+ TDQ+SLR L EQ+ + QQ+W SKL G + I+YKPG++NK ADAL
Sbjct: 1063 WKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRIEYKPGVDNKVADAL 1122
Query: 1029 SRKLQFSAISSVQCE-----DWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLL 1083
SR+ A+S + D L+ EI D + +I++ + + + G +
Sbjct: 1123 SRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKNWAQGDHHDSDFTVADGLIY 1182
Query: 1084 YKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCE 1143
K +V+P S IP +L++FH S +GGH G +T+KR+++ +W G++ D+ Y++ C+
Sbjct: 1183 RKGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYWRGLRKDVVNYIKGCQ 1242
Query: 1144 ICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFL 1203
ICQ NKY TL+PAG L PLPIP Q+WSD+S+DF+ GLP + + ILVVVDR +KY+HF+
Sbjct: 1243 ICQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNCILVVVDRLSKYSHFI 1302
Query: 1204 ALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYH 1263
L HP+ AK V E FI+++VKLHGFP ++VSDRDR+FLS FWSELFKL GT L+ S+AYH
Sbjct: 1303 PLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYH 1362
Query: 1264 PQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGRE 1323
PQTDGQTEVVNRC+E+YLRC G +P W +WL WAE+WYNT+YHSA KTTPFQA+YGRE
Sbjct: 1363 PQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGRE 1422
Query: 1324 PPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDM 1383
PPV+++ D + VE++ +R+ L L+ENLE AQ +MK+ A+K RRD+ ++ +
Sbjct: 1423 PPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAADKSRRDVAFEIDEW 1482
Query: 1384 VYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLK 1443
VYLK++PY+ S+A RKN+KLS R++GP+ V+ +I VAYKLQLPE S +HPVFHVS LK
Sbjct: 1483 VYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEHSTIHPVFHVSQLK 1542
Query: 1444 KAPNEGVNSQPLPVYMTEEWELKVEPESIIDSRAGDKGT-VEVLVKWKNMPEFENSWEDY 1502
+A Q LP ++ E PE ++D R + + EVLV+W + E++WE
Sbjct: 1543 RAVPPSFTPQELPKILSPTLEWNTGPEKLLDIRQSNTNSGPEVLVQWSGLSTLESTWEPL 1602
Query: 1503 TELLEQFPEHHLEDKVILQGGRDD 1526
L++Q+P+ LEDKV L G D
Sbjct: 1603 LTLVQQYPDFDLEDKVSLLRGSID 1626
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 1149 bits (2971), Expect = 0.0
Identities = 624/1444 (43%), Positives = 878/1444 (60%), Gaps = 47/1444 (3%)
Query: 103 RVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRA 162
++D P F+G + WI K E+FF + +++ + + ++ + W+Q ++ P +
Sbjct: 99 KLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEPFSS 158
Query: 163 WEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFL 222
W+ F +AL F P P L Q +V EY F L + E + F+
Sbjct: 159 WQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEAILDCFV 218
Query: 223 NGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFS 282
+GL EEI ++K L + A L EEK ++ K+ R F+
Sbjct: 219 SGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARN----------FT 268
Query: 283 TNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGG-QRL 341
+N+ T+ YP + Q N+ +L + + P N +++
Sbjct: 269 SNTSATQK---YPPTN---------QKNDNPKPNLPPLLPTPSTK---PFNLRNQNIKKI 313
Query: 342 TQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEGEDEEEEEEVFEEAEDGEFVLE 401
+ E+Q R + LC+ C EK+ H C + L+ +E DE++ +E E+ ++
Sbjct: 314 SPAEIQLRREKNLCYFCDEKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEAN--MD 371
Query: 402 GKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATS 461
LSLN+ G + + G++G + ILVD G++ NFI + L++PV
Sbjct: 372 DDTHHLSLNAMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAP 431
Query: 462 EYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEAN 521
V VGNG G+ + L L +QG + ++L + G +++LG WLA+LG A+
Sbjct: 432 NLRVLVGNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVAD 491
Query: 522 FQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEG-EEYFLSYECSEEEPTANV 580
+ L +K+ N + + +QGE + A ++ ++ + EE F +E P +
Sbjct: 492 YAALTLKFFQNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQKEVPEDTL 551
Query: 581 TI------PELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQK 634
PEL I LL + +VF P LPP+R DHAI L++G+ +RPYRYP QK
Sbjct: 552 KDLPTNIDPELAI-LLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQK 610
Query: 635 NEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPII 694
++IEK+++EML GII+ S SPFS P +LVKKKDG WRFC DYRALN +T+ D FP+P +
Sbjct: 611 DQIEKMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTV 670
Query: 695 DELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTF 754
DELLDE+ A+ FSKLDL+SGYHQI ++ ED KTAFRTH GHYE+LV+PFGLTNAP+TF
Sbjct: 671 DELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATF 730
Query: 755 QALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQ 814
Q LMN++ + LRKFVLVFF DILIYS + H +HL VLQ L+ + L A KCSFG
Sbjct: 731 QCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGD 790
Query: 815 SELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQP 874
+E+ YLGH +S GV+ + +K++ +L+WP P +VK LRGFLGLTGYYRRF+++Y+ +A P
Sbjct: 791 TEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGP 850
Query: 875 LNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQG 934
L LL+K++F W+ A AF KLK+ MT PVL++PDF + F+LETDASG G+GAVL Q
Sbjct: 851 LTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQN 910
Query: 935 GRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQR 994
G P+AY SK L+ R Q +S Y REL+A+ A+ K+RHYLLG KFI+ TDQ+SL+ L +Q
Sbjct: 911 GHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQS 970
Query: 995 LMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRKLQFSAISSVQCEDWEDLETEILA 1054
L EQQ W+ K +G+DF+I+YKPG +N+AADALSR A S E+L +++
Sbjct: 971 LQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFML-AWSEPHSIFLEELRARLIS 1029
Query: 1055 DDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAG 1114
D + K + E QG + Y +R G L +K+R+V+P + ILQE+H S +GGHAG
Sbjct: 1030 -DPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAG 1088
Query: 1115 IFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISM 1174
I RT R+ A F+W M+ D++ Y+QKC ICQ+ K PAG LQPLPIP QVW D++M
Sbjct: 1089 ITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAM 1148
Query: 1175 DFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVS 1234
DFI GLP + G I+VV+DR TKYAHF+ L YN+K VAE F+ IVKLHG P SIVS
Sbjct: 1149 DFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVS 1208
Query: 1235 DRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPK 1294
DRDRVF S+FW LFKL GT L SSAYHPQ+DGQ+EV+N+C+E YLRC T PK W K
Sbjct: 1209 DRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVK 1268
Query: 1295 WLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTL 1354
L WAEFWYNT YH ++ TPF+ALYGREPP + + S+ EV + +R+ L L
Sbjct: 1269 ALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDALLAKL 1328
Query: 1355 KENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPV 1414
K NL +AQ MK+QA+K R D+ ++GD V +K+QPY+ S RKNQKLS R++GP+ V
Sbjct: 1329 KINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKV 1388
Query: 1415 IEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQ---PLPVYMTEEWELKVEPES 1471
+ KI VAYKL+LP +++HPVFHVS LK P G PLP+ +TE + ++P
Sbjct: 1389 LAKIGDVAYKLELPSAARIHPVFHVSQLK--PFNGTAQDPYLPLPLTVTEMGPV-MQPVK 1445
Query: 1472 IIDSR---AGDKGTVEVLVKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRDDTD 1528
I+ SR G ++LV+W+N + E +WED ++ +P +LEDKV+ +G + T+
Sbjct: 1446 ILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEGNVTN 1505
Query: 1529 PLVR 1532
+ R
Sbjct: 1506 GMSR 1509
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 1090 bits (2820), Expect = 0.0
Identities = 613/1531 (40%), Positives = 899/1531 (58%), Gaps = 83/1531 (5%)
Query: 8 MESRVDNLERSITEMKEEAHEQFEELRRLFMSRERRRTRGRSNTPRHRRVSRDHNSVSLA 67
++SRV LE ++ E +E +QF +L + +SR + R R S+
Sbjct: 22 LDSRVTRLETTVAEQHKEMMKQFADLYAV-LSRSTAGKMVDEQSTLDRSAPRSSQSME-- 78
Query: 68 RSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGNDAYGWITKVERFFRL 127
+ G R + +H + ++L + ++D P F+G W+ KVE FF +
Sbjct: 79 -NRSGYPDPYRDARHQQVRSDHFNAYNNLTRLG--KIDFPRFDGTRLKEWLFKVEEFFGV 135
Query: 128 SRVEETEKVEMVMIAMEDRALSWFQWWEEQA----PVRAWEPFKQALIRRFQPELVQNPF 183
E KV+M I + A +W Q + + + W+ + + L RF+ + +P
Sbjct: 136 DSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKERFEDD-CDDPM 194
Query: 184 GPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSEDLAD 243
L ++ +++Y + FEL+ + N E L V+L GL + + ++++ + +
Sbjct: 195 AELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHVRMFQPQTVRH 253
Query: 244 LMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPNVSYQSKG 303
+ E+ + K+ W STN G
Sbjct: 254 CLFLGKTYEKAH-------PKKPANTTW----------STNRSAPTG------------- 283
Query: 304 AGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQ--RLTQTELQERSRRGLCFKCGEK 361
G ++ KEG T++ G K Q +++Q E+ +R +GLC+ C EK
Sbjct: 284 --------GYNKYQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEMSDRRSKGLCYFCDEK 335
Query: 362 WGREHICAKKNFQLILIEGEDEEEE--EEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNR 419
+ EH K QL ++ ++E E+ EE+ + ++ + Q+S+N+ G+ +
Sbjct: 336 YTPEHYLVHKKTQLFRMDVDEEFEDAREELVNDDDE-------HMPQISVNAVSGIAGYK 388
Query: 420 SFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVC 479
+ +VKG ++ I IL+D G+T NF+ A+L V V V +G + R G
Sbjct: 389 TMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKV 448
Query: 480 KNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQ 539
+ ++Q ++ L G ++VLG+ WL +LG I F+ L ++++ N QK+ +
Sbjct: 449 TDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLH 508
Query: 540 GEPSFCKVAATWKSIKKTKHDEGEEYFLS-YECSEEEPTANVTIPELWIKL--------- 589
G S + ++K + D+ + L E SE TI L +L
Sbjct: 509 GLTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEV 568
Query: 590 LTEFPEVFQEPKELPPKRAT-DHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAG 648
L E+P++F EP LPP R +H I L EG+ N RPYRY +QKNEI+KLV+++L G
Sbjct: 569 LNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNG 628
Query: 649 IIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFS 708
++ S+SP++SP +LVKKKDG WR CVDYR LN +T+ D FPIP+I++L+DE+G A IFS
Sbjct: 629 TVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFS 688
Query: 709 KLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRK 768
K+DL++GYHQ+RM +DI KTAF+TH GH+EYLV+PFGLTNAP+TFQ LMN + +P+LRK
Sbjct: 689 KIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRK 748
Query: 769 FVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEG 828
FVLVFF DIL+YS++++ H++HL++V +V+R N L A KC+F ++ YLGH IS +G
Sbjct: 749 FVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQG 808
Query: 829 VAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSA 888
+ DP+KIK + WP P +K LRGFLGL GYYRRFVR++ +A PL+ L K + F W+A
Sbjct: 809 IETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTA 868
Query: 889 GATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSER 948
A QAF+ LK + PVL++P F K FV+ETDA G+G+GAVLMQ G P+AY+S+ L +
Sbjct: 869 VAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGK 928
Query: 949 AQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLM 1008
S+YE+EL+AV+ AV+KWRHYLL FI+ TDQ+SL++L EQRL QQ+W+ KL+
Sbjct: 929 QLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLL 988
Query: 1009 GFDFEIKYKPGIENKAADALSR----KLQFSAISSVQCEDWEDLETEILADDKYQKIIQE 1064
FD+EI+Y+ G EN ADALSR ++ A++ V+C+ +D++ D + Q II
Sbjct: 989 EFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITA 1048
Query: 1065 ITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISA 1124
+ + + L K++IV+P IL H S VGGH+G T++R+
Sbjct: 1049 LQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKG 1108
Query: 1125 LFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTM 1184
LF+W+GM DIQ Y++ C CQ+ K + G LQPLPIP +WS++SMDFI GLP +
Sbjct: 1109 LFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSG 1168
Query: 1185 GKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSF 1244
GK I+VVVDR +K AHF+ALSHPY+A VA ++ + KLHG PTSIVSDRD VF S F
Sbjct: 1169 GKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEF 1228
Query: 1245 WSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYN 1304
W E F L G LK +SAYHPQ+DGQTEVVNRC+ETYLRC+ +P+ W KWL+ AE+WYN
Sbjct: 1229 WREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYN 1288
Query: 1305 TNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNR 1364
TNYHS+ + TPF+ +YG+ PPV + + V V + ER L LK +L +AQ+R
Sbjct: 1289 TNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHR 1348
Query: 1365 MKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYK 1424
MKQ A++HR + + ++GD VY+K+QPY+ +S+ R NQKLSP+++GPY +I++ VAYK
Sbjct: 1349 MKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYK 1408
Query: 1425 LQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEWELKVEPESIID----SRAGDK 1480
L LP SQVHPVFHVS LK + LP M + +E KV PE +++ +R G K
Sbjct: 1409 LALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFE-KV-PEKVVERKMVNRQG-K 1465
Query: 1481 GTVEVLVKWKNMPEFENSWEDYTELLEQFPE 1511
+VLVKW N P E +WE +L + FPE
Sbjct: 1466 AVTKVLVKWSNEPLEEATWEFLFDLQKTFPE 1496
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 1048 bits (2710), Expect = 0.0
Identities = 582/1443 (40%), Positives = 848/1443 (58%), Gaps = 94/1443 (6%)
Query: 99 VTGRRVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQA 158
+ G R++IP+F+G D W+ + E+F+ +S + V + + ++ +A+ W++
Sbjct: 203 IKGPRLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPW 262
Query: 159 PVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVME-----YREHFELLAAPMRNAD 213
+ W + + RF + KQ +E + E+ +L+
Sbjct: 263 QLITWPQWCAMVSTRFSAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRREHPYLQ 322
Query: 214 REVLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKE 273
+ L F+ GL +IK ++ + + L + + K+ E K
Sbjct: 323 EQYLNSCFIGGLRGDIKHDVCGHKPQGLLE-------------SYWYTKNYERAANARKN 369
Query: 274 KGGFG-GRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPE 332
F RF +G +GR++ N G+P+ E E E
Sbjct: 370 LLNFNRNRFQNQAGPIQGRNVV---------------NRGQPREQVEKKE---------E 405
Query: 333 RKWNGGQRLTQTELQERSRRGLCFKCGEKWGREHIC-AKKNFQLILIEGE---DEEEEEE 388
RK C+ C E W +H C KK +L+EGE DE EE E
Sbjct: 406 RK--------------------CWFCKEPWFPKHQCKVKKALNALLMEGEEGKDEGEEGE 445
Query: 389 VFEEAEDGEFVLEG---------KVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCG 439
+ ED + E +++ +S N+ G T +F V +I R + LVD G
Sbjct: 446 LTGNQEDCKLEKEEAPPDDENQEELMFVSHNAVYGTTRPDTFSVIIQINGRRAVGLVDSG 505
Query: 440 ATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILG 499
+TS F+ Q+ P+V+T V V G ++ L ++QG F I+
Sbjct: 506 STSTFMDQDYAVRNHCPLVSTDAKKVVVAGGGELKSEVQVPELVYQIQGETFSNKFNIIP 565
Query: 500 LGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSFCK-VAATWKSIKKTK 558
L G +++LG DW+ I + + + + + +Q K + K + +
Sbjct: 566 LKGYDVILGADWIYKYSPITLDLKKRELGITKGEKTVVIQDFTRPGKHLWVDSKKVDQIL 625
Query: 559 HDEGEEYFLSYECSEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEG 618
G +EE T++ IPE ++L EFP V ++PK LPP+R DH I L+ G
Sbjct: 626 RKGGLGCLFQITRVKEEETSH-EIPEDIKEILQEFPAVLKDPKGLPPRRNCDHVITLKSG 684
Query: 619 APIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYR 678
A PN+RPYR P YQK +EK++ E++ + I+ S P+SSPA++V+KKDG WR CVDYR
Sbjct: 685 AEPPNLRPYRVPHYQKEAMEKIIAELIESKEIQVSDIPYSSPAVMVRKKDGSWRLCVDYR 744
Query: 679 ALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHY 738
LN T+ +KFP+PII++LLDE+ A++FSKLDL+SGYHQIRM +DIPKTAFRTH GHY
Sbjct: 745 QLNAQTVKNKFPMPIIEDLLDELNGAKVFSKLDLRSGYHQIRMATQDIPKTAFRTHLGHY 804
Query: 739 EYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVL 798
EY V+PFGLTNAP+TFQ+LMNQVL P+LRK+VLVFF DILIYS + HKEH+R+V++VL
Sbjct: 805 EYQVMPFGLTNAPTTFQSLMNQVLAPFLRKYVLVFFDDILIYSKDWAEHKEHIRQVMKVL 864
Query: 799 RDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLT 858
+N LV KKC+FG + YLGH+IS++GVA DP K++ + +P PK V LR FLG+T
Sbjct: 865 EENKLVVKLKKCAFGLPSVTYLGHIISQDGVATDPKKVEKIATYPTPKSVTDLRKFLGMT 924
Query: 859 GYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVL 918
GYYRRF++NY + +PL+ +LKK F W T+AF+ LK M T PVL++PDF K FV+
Sbjct: 925 GYYRRFIKNYGIVCRPLHDMLKKEGFQWEREQTEAFETLKTHMCTSPVLSLPDFTKEFVI 984
Query: 919 ETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKF 978
E DA G G+GAVLMQ GRP+AY SKTL +A A+S+YE+E MA++ A++KWRHY+LG +
Sbjct: 985 EADACGNGIGAVLMQSGRPLAYFSKTLGPKAAAQSIYEKEAMAILEALKKWRHYVLGSRL 1044
Query: 979 IVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSR---KLQFS 1035
I+ TDQ+SL+F+ QRL+ Q K + KLM +D+ I+YK G EN ADALSR Q
Sbjct: 1045 IIKTDQQSLKFMMNQRLVEGIQHKLLLKLMEYDYSIEYKAGKENLVADALSRIPPAEQCQ 1104
Query: 1036 AISSVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSG 1095
AI++V E D++ D + KI+ I T+G Y G L YK RI + + +
Sbjct: 1105 AITTVIPEWVRDIQRSYEGDVQAHKILSLIGTEGDTDGSYSQEAGLLRYKGRIYVGENTE 1164
Query: 1096 KIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNP 1155
+++ +H SA GGH+G+ TY RI +LF+W G+K ++ ++++C ICQ K E ++
Sbjct: 1165 IREELIRSYHSSAFGGHSGMRATYHRIKSLFYWPGLKKAVEGFIRECPICQVTKAEHIHI 1224
Query: 1156 AGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVA 1215
G L PL +P W+ I+MDF+ GLPK+ GKD ILVVVDR TKYAHF+A++HPY ++V
Sbjct: 1225 PGLLDPLEVPDMAWAHITMDFVEGLPKSNGKDVILVVVDRLTKYAHFIAMAHPYTVEQVV 1284
Query: 1216 ELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNR 1275
ELF+ I +LHG P +I++DRDR+F S + E+FK +LKFS++YHPQTDGQTE VN+
Sbjct: 1285 ELFMNNIHRLHGMPMAIITDRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQTDGQTERVNQ 1344
Query: 1276 CVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLA 1335
C+E+YLR +T +P +W WL+ AE+WYNT YH++I+ TPFQALYG PP I + +
Sbjct: 1345 CLESYLRSMTFQEPTRWHSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFSVP-C 1403
Query: 1336 SVNEVEKMTAE-RNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLK 1394
+V+E ++T E ++ + LK +L +AQ R+K A+++R + L VGDMVYLK+QPY+
Sbjct: 1404 NVSEEARVTIEQKDAIIQKLKYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQT 1463
Query: 1395 SLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQP 1454
+ R + KL +FYGP+ ++EK+ VAYKLQLPEGS +HPVFHVS LKK + S+
Sbjct: 1464 AFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQLKK----HIGSRA 1519
Query: 1455 LPV----YMTEEWELKVEPESIIDSRAGDKGTVEV---LVKWKNMPEFENSWEDYTELLE 1507
+P+ + + ++K EP +++ R +G V V LV W N+ E +WED + +
Sbjct: 1520 VPMANLPSVGPDGQIKTEPVAVLKRRMIPRGGVAVTQWLVLWHNLSPSEATWEDASMIQS 1579
Query: 1508 QFP 1510
FP
Sbjct: 1580 MFP 1582
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 1035 bits (2676), Expect = 0.0
Identities = 581/1440 (40%), Positives = 822/1440 (56%), Gaps = 89/1440 (6%)
Query: 99 VTGRR-----VDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQW 153
V GRR +D P F+G D W+ E +F L ++ E KV + M A W+Q
Sbjct: 121 VQGRRSWVPKMDFPKFDGTDVCVWVDNCETYFALYQITEGFKVSAASLNMIGDAAHWYQA 180
Query: 154 WEEQAPVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNAD 213
W+++ WE ++A++ F+ + + LL Q G+V EYR F L +R D
Sbjct: 181 WKQERGWPTWEQLREAVLNEFEINIKRAKMEELLLLTQTGTVSEYRSKFLQLVYHIRLYD 240
Query: 214 REV----LKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKR 269
L F+ GL +E++ + E + AL E
Sbjct: 241 PATSGLFLVSRFVMGLKDELRCFVAAQEPETVHQAARVALAFE----------------- 283
Query: 270 GWKEKGGFGGRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGK 329
G F R + + NV + KG G+ K Q LKE
Sbjct: 284 -----GAFCNR------KVAFKKDVGNVKFGDKGKVPV-GDLWKAQQLKE---------- 321
Query: 330 IPERKWNGGQRLTQTELQERSRRGLCFKCGEKWGREHICAKKN---FQLILIEGEDEEEE 386
R GLCFKCGEK+ H C K + + + D+
Sbjct: 322 ------------------YRRTHGLCFKCGEKYSPAHTCGKTEGAQLKTMEVSSSDDVLT 363
Query: 387 EEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFIS 446
+E+ + E + + +L LSL + G ++ S +++ G + ++ILVD G++ +FI+
Sbjct: 364 DEILDVVTAFEQLPDDNML-LSLQAVAGTSATHSLQLRALAGNQVVIILVDSGSSHSFIN 422
Query: 447 QELVAELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELV 506
+L ++L + V+V NG + +QG + +L +GG ++V
Sbjct: 423 ADLCSKLNLSTDPIPVSTVKVANGETLQCEAQVSEFSWWIQGCTFVSSLKVLSMGGHDIV 482
Query: 507 LGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSF-CKVAATWKSIKKTKHDEGEEY 565
LGMDWL+ + N+ D +++ G+ + +QG S + + S + K G +
Sbjct: 483 LGMDWLSKFSPMTCNWADRWLEFTYQGKLVKLQGIQSHQLQYLSEVSSDQMMKWQVGNDI 542
Query: 566 F-LSYECSEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNI 624
+ L+ P + +P +L ++ VFQ LPP R DH+I L GA N
Sbjct: 543 WALAVVDCLSSPLCDSAVPASIQDVLQKYSSVFQPSAGLPPHRELDHSIPLVPGAIPVNS 602
Query: 625 RPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVT 684
RPYRY QK+EIEK V+EML +G+I S SPF+SP +LVKKKD WRFCVDYR LN +T
Sbjct: 603 RPYRYSPAQKDEIEKQVQEMLESGLISRSCSPFASPVLLVKKKDNTWRFCVDYRRLNAIT 662
Query: 685 IPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLP 744
I +KFP+PI+DELLDE+ FSKLDL+SGYHQIRM+E D KTAF+TH GH+++ V+P
Sbjct: 663 IKNKFPLPIVDELLDELAGTRFFSKLDLRSGYHQIRMKETDEEKTAFKTHHGHFQFRVMP 722
Query: 745 FGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLV 804
FGLTNAP+TFQ LMN + PYLRKFVLVF DIL+YS +++ H HL VLQVL+ + L
Sbjct: 723 FGLTNAPATFQCLMNSIFEPYLRKFVLVFMDDILVYSPSLETHAIHLDTVLQVLQQHQLS 782
Query: 805 ANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRF 864
A KCSF S+L YLGH+IS +GVA DP K + M +WP+P +V LRGFLGLTGYYR+F
Sbjct: 783 AKLSKCSFAASQLEYLGHIISADGVATDPEKTRIMRDWPVPTNVTELRGFLGLTGYYRKF 842
Query: 865 VRNYSKLAQPLNQLLKKN-NFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDAS 923
V+NY +A+PL LL+KN F W+ A AF +LK M + PVLA+PDF KTFVLETDA
Sbjct: 843 VKNYGVIAKPLTVLLQKNAKFIWTDSANSAFLQLKHAMCSTPVLALPDFTKTFVLETDAC 902
Query: 924 GKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTD 983
G+GAVL Q G P+A+ SK L Q S+YE+E +A+++A+ KWR YLL F + TD
Sbjct: 903 ATGIGAVLSQEGHPIAFYSKALGMANQKLSIYEKEFLAIMMAIDKWRSYLLRGPFTIKTD 962
Query: 984 QKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRKLQFSAISSVQCE 1043
+SL L +Q L E Q+K ++KL+G ++ +YK G++NK+ADALSR A S
Sbjct: 963 HQSLCHLDDQILGSELQRKAMTKLIGLQYKFQYKRGVDNKSADALSRVGHLFATVSGPYP 1022
Query: 1044 DW-EDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQ 1102
W +++ D Q+++ E+ P G+ + G + ++I + SG ++
Sbjct: 1023 KWIQEVVNSYATDADAQQLLTELAVSSPNDKGFMLSGGLIKKHDKIWVGANSGLQSKLIA 1082
Query: 1103 EFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPL 1162
FH S +GGH+GI TY R+ LF W GMK ++ +VQ+C +CQ+ K+E G LQPL
Sbjct: 1083 VFHSSPIGGHSGIHATYHRLKKLFVWTGMKQAVEEFVQQCGVCQQAKHEHCKYPGLLQPL 1142
Query: 1163 PIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEI 1222
PIP W DISMDFI GLP + G +TILVVVDRFTKYAHFL+L HP++A +VAELF+ +
Sbjct: 1143 PIPEGSWQDISMDFIEGLPLSKGANTILVVVDRFTKYAHFLSLKHPFSASQVAELFLDRV 1202
Query: 1223 VKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLR 1282
+L+G P SIVSDRDRVF SSFW LF G L S+AYHPQ+DGQTE VN+C+E YLR
Sbjct: 1203 AQLYGMPKSIVSDRDRVFTSSFWKTLFARFGIPLNMSTAYHPQSDGQTERVNQCLEMYLR 1262
Query: 1283 CVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGRE------PPVIIKGTDSLAS 1336
C P +W WL A+FWYNT++H+++K +P +ALYG + P + ++ +D +S
Sbjct: 1263 CAVANTPSKWASWLPLAQFWYNTSFHTSLKCSPHKALYGSDPSYGLLPSLSVEASDESSS 1322
Query: 1337 VNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSL 1396
+ + R+ + TL+ +L +AQN MKQ A+ R +VGD V+LK+QPY S+
Sbjct: 1323 SKDATALLKARSFYSSTLQHHLARAQNHMKQVADSKRTLRVFQVGDSVFLKLQPYAQTSV 1382
Query: 1397 ARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLP 1456
R KL+ +++GP+P++E++ +VAYKLQLP SQVH VFHVS LK + V P+
Sbjct: 1383 VNRPCHKLAMKYFGPFPILERVGSVAYKLQLPPASQVHSVFHVSQLKPSVPSHV---PVY 1439
Query: 1457 VYMTEEWELKVE---PESIIDSRAGDKGT---VEVLVKWKNMPEFENSWEDYTELLEQFP 1510
+ + L VE P I+D R KG V+V V+W ++P+ +WEDY + +FP
Sbjct: 1440 TSLPDVVALDVEDLIPTEILDCRMVKKGNAAIVQVRVRWGSLPDNMATWEDYDVIRTRFP 1499
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 1027 bits (2655), Expect = 0.0
Identities = 589/1494 (39%), Positives = 839/1494 (55%), Gaps = 118/1494 (7%)
Query: 65 SLARSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNG-NDAYGWITKVER 123
+LA + S +G+R + P H R D P ++G +D +I + E
Sbjct: 39 ALATTTSSSTSGARPGFGDQPPDRPPKHW---------RPDFPHYDGKSDPLIFINRCES 89
Query: 124 FFRLSRVEETEKVEMVMIAMEDRALSWF-QWWEEQAPVRAWEPFKQALIRRFQPELVQNP 182
FF R+ + EKV M + + A W+ Q E++ W FK+ L R+ P L P
Sbjct: 90 FFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQEDERGTPTWTRFKELLNLRYGPPLRSAP 149
Query: 183 FGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSEDLA 242
L S ++ G+V +Y++ F+ L D E +F GL + ++++ + LA
Sbjct: 150 LFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQRVQLFTGGLLPPLSLQVQMQNPQSLA 209
Query: 243 DLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPNVSYQSK 302
M A E +++ + GR + P + + +
Sbjct: 210 AAMSLARQFELIE------------------------QYTAVPAKAPGRGVLPAPAPRPQ 245
Query: 303 GAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQRLTQTELQERSRRGLCFKCGEKW 362
A KP T N P R RL Q E +ER R GLCF C EK+
Sbjct: 246 LALPAPAGAAKPAP-PAATAADNR----PVR------RLNQAEQEERRRLGLCFNCDEKY 294
Query: 363 GREH--ICAKKNFQLILIEGEDEEE-EEEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNR 419
R H +C K+ F + +E EDEE E+EV EA SL++ G+
Sbjct: 295 SRGHNKVC-KRLFFVDSVEDEDEEAPEDEVDAEAP-----------VFSLHAVAGVAVGH 342
Query: 420 SFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVC 479
++ ++G ++ LVD G+T NFI + A + V V NG + GV
Sbjct: 343 PILLRVQLGATTLVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATVANGEKVACPGVL 402
Query: 480 KNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQ 539
++ + ++G+P +++ L G ++VLG W+A LG + + + ++L G+ +C Q
Sbjct: 403 RHAPITIEGMPFHVDLYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRALTFDLEGRTICWQ 462
Query: 540 GEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTANVTIPELWIKLLTEFPEVFQE 599
G P+ +++ D+ L LL F +VF E
Sbjct: 463 GAPN-----QDGPAVRAASADDS----------------------LLGGLLDSFADVFTE 495
Query: 600 PKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSS 659
P LPP+R DHAI+L++G +RPYRYP K+E+E+ M++ GI+R S S FSS
Sbjct: 496 PTGLPPQRGRDHAIVLKQGTSPVAVRPYRYPAAHKDELERQCAAMISQGIVRRSDSAFSS 555
Query: 660 PAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQI 719
P +LVKK D WRFCVDYRALN +T+ D FPIP++DELLDE+ A FSKLDL+SGYHQ+
Sbjct: 556 PVLLVKKADSSWRFCVDYRALNALTVKDAFPIPVVDELLDELHGARFFSKLDLRSGYHQV 615
Query: 720 RMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILI 779
RMR EDI KTAFRTH+G YE+LV+PFGL NAP+TFQALMN VLR +LR+FVLVFF DILI
Sbjct: 616 RMRPEDIHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRSFLRRFVLVFFDDILI 675
Query: 780 YSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDM 839
YS+ H HLR VL VLR++ L + KC+FG + YLGHVIS GVA DP+K++ +
Sbjct: 676 YSDTWADHLRHLRAVLTVLREHKLFIKRSKCAFGVDSVAYLGHVISAAGVAMDPAKVQAI 735
Query: 840 LNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKE 899
WP P+ + +RGFLGL GYYR+FV NY +A PL LLKK F+W+ AT AFD LK
Sbjct: 736 REWPQPRSARAVRGFLGLAGYYRKFVHNYGTIAAPLTALLKKEGFAWTEAATAAFDALKA 795
Query: 900 IMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYEREL 959
+++ P+LA+PDF K F +E DAS G GAVL+Q G P+A+ S+ ++ R +A + YEREL
Sbjct: 796 AVSSAPILAMPDFTKAFTVECDASSHGFGAVLIQDGHPLAFFSRPVAPRHRALAAYEREL 855
Query: 960 MAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPG 1019
+ +VLAV+ WR YL G F V TD SL++L +QRL Q WV KL+GFDF ++YKPG
Sbjct: 856 IGLVLAVRHWRPYLWGRHFTVKTDHYSLKYLLDQRLSTIPQHHWVGKLLGFDFTVEYKPG 915
Query: 1020 IENKAADALSRK--LQFSAISSVQCEDWEDLETEILADD------KYQKIIQEITTQGPV 1071
N ADALSR+ + +++ + ++ +E A D Q I+ T GP
Sbjct: 916 AANTVADALSRRDTTEDASVLVLSAPRFDFIERLRQAQDVDPALVALQAEIRSGTRAGP- 974
Query: 1072 PAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGM 1131
+ M G +L+ R+ LP S + +L+ H+ GH G+ RT R+ F + M
Sbjct: 975 ---WSMADGMVLFAGRLYLPPASPLLQEVLRAVHEE---GHEGVQRTLHRLRRDFHFPNM 1028
Query: 1132 KLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILV 1191
K +Q +V+ CE+CQR K E L PAG L PLP+P VW+D+++DF+ LP+ GK IL
Sbjct: 1029 KSVVQDFVRTCEVCQRYKAEHLQPAGLLLPLPVPQGVWTDVALDFVEALPRVRGKSVILT 1088
Query: 1192 VVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKL 1251
VVDRF+KY HF+ L+HPY+A+ VA++F EIV+LHG P S+VSDRD VF S+FWSEL +L
Sbjct: 1089 VVDRFSKYCHFIPLAHPYSAESVAQVFFAEIVRLHGVPQSMVSDRDPVFTSAFWSELMRL 1148
Query: 1252 AGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAI 1311
GTKL ++A+HPQ+DGQ+E NR + YLRC+TG +P+QW +WL WAEF +NT Y +++
Sbjct: 1149 VGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFVFNTAYQTSL 1208
Query: 1312 KTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANK 1371
+ TPF+ +YGR+PP I V V K ER+ FL+ ++ LE+AQ K+ +K
Sbjct: 1209 RDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKSMEERSEFLEDIRYRLEQAQAIQKKYYDK 1268
Query: 1372 HRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGS 1431
R + +VGD V L+++ SL+ + KL PR++GPY + E IN VA +L LP G+
Sbjct: 1269 SHRAVSFQVGDWVLLRLRQRAPASLSLAVSGKLKPRYFGPYRIAEMINEVAARLALPAGA 1328
Query: 1432 QVHPVFHVSLLKK---APNEGVNSQPLPVYMTEEWELKVEPESIIDSRAGDKGTVEVLVK 1488
++H VFH+ LLKK AP + P P+ + EPE +I +R +G +VLV+
Sbjct: 1329 RLHDVFHIGLLKKWHGAPPDA----PPPLPNVHHGAVACEPERVIKARLA-RGVRQVLVQ 1383
Query: 1489 WKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRDDTDPLVRPRFGKVYTRK 1542
WK +WED ++P LED++ L GG D +G+ Y R+
Sbjct: 1384 WKGTSAASATWEDREPFFARYPALQLEDELPLDGGGD-------VMWGRTYVRR 1430
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 1026 bits (2653), Expect = 0.0
Identities = 577/1447 (39%), Positives = 824/1447 (56%), Gaps = 107/1447 (7%)
Query: 101 GRRVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPV 160
G R++IP+F+G D W+ + E+FF ++ + V + + + RAL WF V
Sbjct: 95 GPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQV 154
Query: 161 RAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVME-----YREHFELLAAPMRNADRE 215
AW + + RF + KQ G+ +E + ++ +L+ +
Sbjct: 155 IAWPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKRDHPYLQEQ 214
Query: 216 VLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKG 275
L F+ GL +IK D G K +G
Sbjct: 215 YLTSCFIGGLRADIKY-----------------------------------DVCGQKPQG 239
Query: 276 GFGGRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKW 335
++ N+ + G N + GG QG N N+ G+
Sbjct: 240 LLETYWAANARKMVGNF---NRNRNQNPLGGNQGR------------NANHRGQ------ 278
Query: 336 NGGQRLTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIE-------------GED 382
N G+ +R C+ C E W H C K L+E G D
Sbjct: 279 NRGEG-------DRREEKKCWFCKEPWFPRHQCKIKQAIHALLEEDDGQEDKETSNTGGD 331
Query: 383 EEEEEEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATS 442
EEE++E E A +++ +S + +G + +F V KI R + LVD G+T+
Sbjct: 332 EEEKKETEESATSENESPTEELMYISQTAVQGTSRPDTFSVLIKINGRTAVGLVDSGSTT 391
Query: 443 NFISQELVAELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGG 502
F+ Q+ P+ T V V G + + ++ E+QG F +L L G
Sbjct: 392 TFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVMVPDISYEIQGECFTNQFKLLPLKG 451
Query: 503 TELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATW--------KSI 554
+++LG DW+ + I + + I+ + + +Q F K + K +
Sbjct: 452 YDIILGADWIYNYSPISLDLKQRILGITKGNKVILLQ---DFTKPNKHFQISGKRLEKML 508
Query: 555 KKTKHDEGEEYFLSYECSEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAIL 614
KK + + E EEE IPE ++ +FP V +EPK LPPKR DH I
Sbjct: 509 KKGALGMVIQVNVMSETVEEE---GHVIPEDISDIIQQFPAVLKEPKGLPPKRECDHVIN 565
Query: 615 LQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFC 674
LQ GA PNIRPYR P YQK +E ++ E++ + I+ S SP+SSPA++V+KKDG WR C
Sbjct: 566 LQSGAVPPNIRPYRVPHYQKEAMENIINELIESKEIQTSDSPYSSPAVMVRKKDGSWRMC 625
Query: 675 VDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTH 734
VDYR LN T+ +KFP+PII++LLDE+ A IFSKLDL+SGYHQIRM E+D+ KTAFRTH
Sbjct: 626 VDYRQLNAQTVKNKFPMPIIEDLLDELNGARIFSKLDLRSGYHQIRMAEKDVHKTAFRTH 685
Query: 735 EGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREV 794
GHYEY V+PFGLTN P+TFQ+LMN VL P+LR+FVLVFF DILIYS H EH++ V
Sbjct: 686 LGHYEYQVMPFGLTNDPATFQSLMNHVLAPFLRRFVLVFFDDILIYSKTRAEHLEHVKLV 745
Query: 795 LQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGF 854
+Q L+DNHLV KKC+FG + + YLGHVIS++GVA DP K+ + NWP PKDV +R F
Sbjct: 746 MQALQDNHLVIKLKKCAFGLASVSYLGHVISQDGVATDPKKVGKIKNWPTPKDVTDVRKF 805
Query: 855 LGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQK 914
LG+TGYYRRF++ Y + +P++ +LKKN F W A T AF+ LK + T PVLA+PDF +
Sbjct: 806 LGMTGYYRRFIQGYGTICRPIHDMLKKNGFQWGADQTTAFETLKHKLRTSPVLALPDFDQ 865
Query: 915 TFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLL 974
F +E DA G G+GAVLMQGGRP+A+ SK L +A +S+YE+E MA++ A++KWRHY+L
Sbjct: 866 AFTIEADACGVGIGAVLMQGGRPIAFFSKALGPKAAGQSIYEKEAMAILEALKKWRHYVL 925
Query: 975 GCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRKLQF 1034
G K I+ TDQ+SL+F+ QRL+ Q K + KLM +D+ I+YK G EN ADALSR Q
Sbjct: 926 GSKLIIKTDQQSLKFMMGQRLVEGIQHKLLLKLMEYDYTIEYKSGKENLVADALSRLPQK 985
Query: 1035 SAIS------SVQCEDW-EDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNR 1087
A++ +V +W D++ D + KI+ I T Y + G L YK R
Sbjct: 986 EAVADRCHPMTVVIPEWIVDIQRSYENDVQAHKILSLIGTAADPDREYKLEAGLLKYKGR 1045
Query: 1088 IVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQR 1147
I + + + ++ +H S+ GGH+G+ T+ RI LF+W GM+ +++ ++++C CQ
Sbjct: 1046 IYVGEATDIRRQLITTYHSSSFGGHSGMRATHHRIKMLFYWHGMRGEVERFIRECPTCQI 1105
Query: 1148 NKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSH 1207
K E ++ G L PL IP W+ I+MDFI GLPK+ GKD ILVVVDR TKYAHF+AL+H
Sbjct: 1106 TKSEHVHIPGLLNPLEIPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFIALAH 1165
Query: 1208 PYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTD 1267
PY+ ++V E F+ I KLHG P I++DRDR+F SS + E+FK KL+FS+AYHPQ D
Sbjct: 1166 PYDVEQVVEAFMNNIHKLHGMPMVIITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHPQMD 1225
Query: 1268 GQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVI 1327
GQTE VN+C+E+YLR +T +P +W WL+ AE+WYNT +H+AI+ TPF+A+YG PP I
Sbjct: 1226 GQTERVNQCLESYLRNMTFQEPHKWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSPPQI 1285
Query: 1328 IKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLK 1387
+ + E E+ L+ LK +L AQ+RMK A+K+R + L+VGDMVYLK
Sbjct: 1286 NEFSVPCNISEEARVTIEEKEAILNKLKNSLADAQHRMKYFADKNRTERNLEVGDMVYLK 1345
Query: 1388 IQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKK-AP 1446
++PY+ + R + KL +FYGP+ V++KI +AYKLQLP+ +Q+HPVFHVS LKK
Sbjct: 1346 LKPYRQSAFGIRGSLKLRSKFYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQLKKHLG 1405
Query: 1447 NEGVNSQPLPVYMTEEWELKVEPESIIDSRAGDKGTVEV---LVKWKNMPEFENSWEDYT 1503
+ LP + + ++K EP +++ R + V V L+ W+N+ E +WED +
Sbjct: 1406 KHAIPMSNLP-SVGPDGQIKTEPLAVLQRRMVPRKGVAVTQWLILWQNLSPAEATWEDAS 1464
Query: 1504 ELLEQFP 1510
+ FP
Sbjct: 1465 VIQAMFP 1471
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 1020 bits (2637), Expect = 0.0
Identities = 592/1540 (38%), Positives = 865/1540 (55%), Gaps = 109/1540 (7%)
Query: 8 MESRVDNLERSITEMKEEAHEQFEELRRLFMSRERRRTRGRSNT----------PRHRRV 57
+ +++D L +T+++ A E E++R L ++ ER R+ T PR
Sbjct: 21 LAAKLDKLPDRVTQVQASAFEYSEQVRALNLAVERVEASQRAATTNPSGLVSRQPRDNTP 80
Query: 58 SRDHNSVSLARSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGN-DAYG 116
+D R G T A+ S P +++ P ++G D
Sbjct: 81 PQDDADARSRRDQHGDDT---AIDNSFLPRA--------------KLEFPTYDGKGDPLP 123
Query: 117 WITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRAWEPFKQALIRRFQP 176
W+ + E F R + ET KV + + A W+ E + +W F Q + RF P
Sbjct: 124 WLNRCETF-RGQKTPETRKVWYASLHLIGDAQLWYYRIELNSGEPSWRRFVQLVHTRFGP 182
Query: 177 ELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFLNGLHEEIKAEMKLY 236
+ +P G L + ++ G+V Y F LA +F GL +K ++ L
Sbjct: 183 PMTDSPLGELTALRRTGTVENYVNSFLALACRDVELSESQQVQLFTAGLVNPLKTDVALC 242
Query: 237 PSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPN 296
L D A++L R ++++ G + S GR P+
Sbjct: 243 RPRSLDD----AIMLA----------------RAYEQRATLGP--TDPSAPRTGRVPRPS 280
Query: 297 VSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQRLTQTELQERSRRGLCF 356
+ S + + GK P +RL+ E+ +R GLC+
Sbjct: 281 LPASSAASASASTTSAD-------VAASTAAGKQPLVSALPRKRLSPAEMAQRRSEGLCY 333
Query: 357 KCGEKWGREHICAKKNFQLILIE-GEDEEEEEEVFEEAEDGEFVLEGKVLQLSLNSKEGL 415
C EK+ H C KK+F + +I ED +EE+ EA + + L++ G+
Sbjct: 334 NCDEKYVAGHRC-KKSFVIEVISFPEDTGDEEDSTPEAH----AITLDEPSIFLHALAGI 388
Query: 416 TSNR--SFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATSEYVVEVGNGARE 473
++ + + KV ++G +E++ L+D G+T NFI+ + + +P+ V V NG R
Sbjct: 389 SAPKFNTIKVWARLGSQELVALLDSGSTHNFINDAIAHQASVPLQRRPGLSVAVANGDRV 448
Query: 474 RNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNG 533
+ G C ++ + F+ L LGG ++VLG WL +LG W+ +
Sbjct: 449 PSPGRCPPQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLGPT---------LWDFSR 499
Query: 534 QKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTANVTIP----ELWIKL 589
Q + P+ +V TW SI + P I +L L
Sbjct: 500 QSLAFG--PAHDRV--TWTSID----------------AAPAPALAAAIDGQPGDLMTDL 539
Query: 590 LTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGI 649
L ++F EP LPP+R H I L+ G +RPYRY QK+E+E+ +ML G+
Sbjct: 540 LDVLKDLFTEPHGLPPERHLCHRIRLEAGVSAVAVRPYRYAHIQKDELERQCDDMLRHGV 599
Query: 650 IRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSK 709
IR S+S FSSPA+L+KK DG WRFCVDYRALN TI DKFPIP+ +EL DE+ A+ F+K
Sbjct: 600 IRPSSSAFSSPALLIKKCDGSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRGAKFFTK 659
Query: 710 LDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKF 769
LD++SGYHQ+ M +D+ KTAFRTH+G +E+LV+PFGLTNAP+TFQALMN VL P+LR+F
Sbjct: 660 LDMRSGYHQVLMHPDDVHKTAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLLPFLRRF 719
Query: 770 VLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGV 829
VLVFF DILIYS++ H H+R VLQ L+D+ L + KC FG + + YLGHVIS +GV
Sbjct: 720 VLVFFDDILIYSSSWSEHLRHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHVISGDGV 779
Query: 830 AADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAG 889
A D SK++ +L+WP+PK V+ +RGFLGL GYYRRF+R++ +A PL LL+K F WS
Sbjct: 780 AMDRSKVQAVLDWPVPKTVRAVRGFLGLAGYYRRFIRDFGAIAAPLTALLRKEGFRWSDE 839
Query: 890 ATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERA 949
A AF KL+ +T PVL +PDF + F++E DASG GLGAVL QGG PVA+ S ++ R
Sbjct: 840 AAAAFRKLQHALTAAPVLQLPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPRH 899
Query: 950 QAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMG 1009
+ YEREL+ +V AV+ WR YL G +FI+ TD SLRFL +QRL Q W SKL+G
Sbjct: 900 AKLAAYERELIGLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLLG 959
Query: 1010 FDFEIKYKPGIENKAADALSRKLQFSA----ISSVQCEDWEDLETEILADDKYQKIIQEI 1065
FDF ++YKPG N ADALSR+ + A +S+ +D+ E+ + + +I
Sbjct: 960 FDFAVEYKPGTANVVADALSRRDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDDI 1019
Query: 1066 TTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISAL 1125
+G P + + G ++ K+R+ +P++S +P +L+ H GH G +T R+ A
Sbjct: 1020 -IRGAKPPPWAFKDGLIVLKDRVFIPESSPLLPAVLELAHGH---GHEGTQKTMFRLRAD 1075
Query: 1126 FFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMG 1185
F ++ +Q +V+ C CQRNK E L PAG LQ LP+PS VW+DI+MDF+ GLP+ G
Sbjct: 1076 FHVPRDRVLVQDFVRACLTCQRNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVHG 1135
Query: 1186 KDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFW 1245
K IL VVDRF+K+AHF+ LSHPY A VA F +IV+LHG P+SIVSDRD VF S FW
Sbjct: 1136 KTVILTVVDRFSKFAHFIPLSHPYTATTVAAAFFGDIVRLHGVPSSIVSDRDPVFTSKFW 1195
Query: 1246 SELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNT 1305
+ELF+LAG +L +SA+HPQ+DGQ+EV N+ + YLRC+TG +P+QW +WL WAE+ YNT
Sbjct: 1196 TELFRLAGVQLNLTSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRQWLRWLPWAEYCYNT 1255
Query: 1306 NYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRM 1365
+Y ++++TTPF +YGR PP + + V++ +R+ FL +++ LE+AQ
Sbjct: 1256 SYQASLRTTPFHVVYGRSPPSLRSYEPGSTCLPAVQRSMQDRDQFLVAIRDRLEQAQQVY 1315
Query: 1366 KQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKL 1425
KQ +K R++ VGD V+L++ + SL R KL P+FYGPY ++ I +VAY+L
Sbjct: 1316 KQAYDKKHRELNFDVGDWVWLRLLHRPMASLDTRGRGKLGPKFYGPYQIVACIGSVAYRL 1375
Query: 1426 QLPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEWELKVEPESIIDSRAGDKGTVEV 1485
+LP G+++H VFHV LLK E ++ P P+ T+ ++ +EP+S+ SR +G +V
Sbjct: 1376 RLPPGARLHDVFHVGLLKPFRGEPPSTLP-PLPPTQHGQVCLEPQSVSRSRLA-RGVRQV 1433
Query: 1486 LVKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRD 1525
LV+WKN P + SW E +P+ LED+++L+GGRD
Sbjct: 1434 LVQWKNKPAADASWLSLDEFRALYPDFQLEDELLLEGGRD 1473
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 1017 bits (2630), Expect = 0.0
Identities = 593/1440 (41%), Positives = 833/1440 (57%), Gaps = 46/1440 (3%)
Query: 103 RVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRA 162
++D P F+G D W K E +F ++ V + +I RA SW + +
Sbjct: 178 KLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAASWLRSTKAHVRFPN 237
Query: 163 WEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREV----LK 218
WE F AL +F + + + +Q G+V EY E F+ L + D V L
Sbjct: 238 WEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNKLLVYDPVVNMHYLT 297
Query: 219 GVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFG 278
F GL+ +I+ + L DL + ALL EE KE K +G
Sbjct: 298 HRFTEGLYRKIRNVVLLQRPRDLESALAVALLQEEVLETADEVTGKEVKK----SEGNSL 353
Query: 279 GRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGG 338
GR N RG P +S G +E K + + TN
Sbjct: 354 GRSVAN---LRGAYPLPTPPMRSGGINMGIKSEEKKESEVRRSSGTN------------- 397
Query: 339 QRLTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEGEDEEEEEEVFEEAEDGEF 398
+RL+ + Q R++ GLC+ C EKW H C+ QL ++ E V + +
Sbjct: 398 ERLSSLKAQRRAQ-GLCYICAEKWSPTHKCSN-TVQLHAVQELFTVLHESVEDGLSTTDH 455
Query: 399 VLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVV 458
V+E ++ +SL + +G + ++ G+I +EILILVD G++++FIS+ + + L +
Sbjct: 456 VVEQTLMAVSLQAVQGTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLE 515
Query: 459 ATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLA--SLG 516
V V GA+ N + +QG + +L L +++LGMDWL S
Sbjct: 516 QPVHVQVMVAGGAKLHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQHSPM 575
Query: 517 NIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIK-KTKHDEGEEYFLSYECSEEE 575
++ + LII + G ++ + G S + A S + + +D L CS
Sbjct: 576 TVDWTTKSLIIAYA--GTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLVQFCSVFA 633
Query: 576 PTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKN 635
IPE+ +LTEF VF EPK LPP R DH I L GA N+RPYRY QKN
Sbjct: 634 LEYQEQIPEVVQTVLTEFSSVFDEPKGLPPIRQFDHTIPLLPGAGPVNVRPYRYTPIQKN 693
Query: 636 EIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIID 695
EIE V+EML+ GII+ S+SPFSSP +LVKKKDG WRFCVDYR LN +T+ +K+P+P+ID
Sbjct: 694 EIESQVQEMLSKGIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRHLNAITVKNKYPLPVID 753
Query: 696 ELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQ 755
ELLDE+ A+ FSKLDL+SGYHQIRM +D KTAF+TH GH+E+ VLPFGLT+AP+TFQ
Sbjct: 754 ELLDELAGAQWFSKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFEFRVLPFGLTSAPATFQ 813
Query: 756 ALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQS 815
+MN VL LR+ VLVF DILIYS +++ H +HL+ V Q+L + L + KCSF Q
Sbjct: 814 GVMNSVLATLLRRCVLVFVDDILIYSKSLEEHVQHLKTVFQILLKHQLKVKRTKCSFAQQ 873
Query: 816 ELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPL 875
EL YLGH+I GV+ DP KI+ + +WP P VK LR FLGL+GYYR+FVRNY L++PL
Sbjct: 874 ELAYLGHIIQPNGVSTDPEKIQVIQHWPAPTSVKELRSFLGLSGYYRKFVRNYGILSKPL 933
Query: 876 NQLLKKNN-FSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQG 934
LL+K + W+A AF LK+ + T VLA+PDFQ FV+ETDAS KG+GAVLMQ
Sbjct: 934 TNLLRKGQLYIWTAETEDAFQALKQALITALVLAMPDFQTPFVVETDASDKGIGAVLMQN 993
Query: 935 GRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQR 994
P+A++S+ L R S YE+E +A++LAV WR YL +F + TD +SL FL EQR
Sbjct: 994 NHPLAFLSRALGLRHPGLSTYEKESLAIMLAVDHWRPYLQHDEFFIRTDHRSLAFLTEQR 1053
Query: 995 LMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSR-----KLQFSAISSVQCEDWEDLE 1049
L Q K ++KL+G ++I +K GI+N AADALSR +++ SA+S E D+
Sbjct: 1054 LTTPWQHKALTKLLGLRYKIIFKKGIDNSAADALSRYPGSDRVELSALSVAVPEWINDIV 1113
Query: 1050 TEILAD-DKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSA 1108
+D D K+ G VP + +R G L ++NR+ + IL H +A
Sbjct: 1114 AGYSSDPDACSKVQTLCINSGAVP-NFSLRNGVLYFQNRLWVGHNVDVQQRILANLHTAA 1172
Query: 1109 VGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQV 1168
VGGH+GI TY+R+ LF W ++ + YVQ C +CQ+ K E + G LQPLP+P
Sbjct: 1173 VGGHSGIQVTYQRVKQLFAWPRLRATVVQYVQACSVCQQAKSEHVKYPGMLQPLPVPDHA 1232
Query: 1169 WSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGF 1228
W +S+DF+ GLPK+ + ILVVVD+F+KY+HF+ L+HP++A +VAE +++ I +LHG
Sbjct: 1233 WQIVSLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAEAYMQHIHRLHGL 1292
Query: 1229 PTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAK 1288
P S++SDRDR+F S+ W+ LF+LAGT+L+ SS+YHPQTDGQTE VN+C+ET+LRC A
Sbjct: 1293 PQSLISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRCFVHAC 1352
Query: 1289 PKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERN 1348
P QW +WL+ AE+WYNT++HSA+ TTPF+ LYG +P + +++ + ER
Sbjct: 1353 PSQWSRWLALAEYWYNTSFHSALGTTPFEVLYGHKPRYFGLSASAACRSDDLVEWLHERE 1412
Query: 1349 LFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRF 1408
++++L +AQ RMKQQA++HR + VGD VYLK+QP+ +S+ R N+KLS RF
Sbjct: 1413 KMQALIRDHLLRAQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTRANRKLSFRF 1472
Query: 1409 YGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKK--APNEGVNSQPLPVYMTEEWELK 1466
YGP+ V++K+ VAY+L LP S +HPV HVS LKK AP E V+S PLPV +
Sbjct: 1473 YGPFQVLDKVGTVAYRLDLPSSSLIHPVVHVSQLKKALAPTEQVHS-PLPV-LDPTNATH 1530
Query: 1467 VEPESIIDS---RAGDKGTVEVLVKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGG 1523
V P I+D R G K ++ V+W +WE+ EL +FP + QGG
Sbjct: 1531 VCPAQILDRRFIRKGSKLVEQIQVRWTGDAPAATTWENPQELRRRFPTAPAWGQAGTQGG 1590
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 1016 bits (2627), Expect = 0.0
Identities = 578/1444 (40%), Positives = 827/1444 (57%), Gaps = 95/1444 (6%)
Query: 99 VTGRRVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQA 158
+ G R++I +F G D W+ + E+FF ++ + V + + + RA WF+
Sbjct: 227 IKGPRLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPW 286
Query: 159 PVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVME-----YREHFELLAAPMRNAD 213
V W + + RF + KQ G +E + E+ +L+
Sbjct: 287 QVITWPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRRDHPYLQ 346
Query: 214 REVLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKE 273
F++GL +IK D+ + LL + K+ E+ K
Sbjct: 347 EPYFTSCFISGLRGDIK--------HDVCGQKPQGLL-----ESYWYAKNYEKAANSRKA 393
Query: 274 KGGFGGRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPER 333
F R +G G+++Y N+G+P+ EG E
Sbjct: 394 AANFN-RNRLQTGGNTGKNVY---------------NKGQPRQ----------EGDKKEE 427
Query: 334 KWNGGQRLTQTELQERSRRGLCFKCGEKWGREHIC-AKKNFQLILIEGED--EEEEEEVF 390
K C+ C E W H C K+ +L+E E+ E EE+ V
Sbjct: 428 K-------------------KCWFCKEPWFPRHQCKVKQAIHALLVENEESVEVEEDSVE 468
Query: 391 EEAEDGEFV----------LEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGA 440
EE GE ++ +++ +S ++ GLT +F V K+ ++ + LVD G+
Sbjct: 469 EEEIKGEKQGEKLPEQTENVQEELMSISQSAVYGLTRPDTFSVMIKVNGKKAVGLVDSGS 528
Query: 441 TSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGL 500
T+ F+ + + + + T V V G ++ + ++ E+QG F +L L
Sbjct: 529 TTTFMDSKFAIKSQCTLENTKMRKVIVAGGGELKSELIVPGMEYEIQGESFTNSFNLLSL 588
Query: 501 GGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATW----KSIKK 556
+++LG DW+ I + + +K G+++ +Q F K + K + K
Sbjct: 589 ERYDIILGADWIFKYSPITLDLRKREMKITKGGRELEIQ---DFTKPGKYFQVSNKKMGK 645
Query: 557 TKHDEGEEYFLSYECSEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQ 616
+ ++ V IP+ +L FP+V +EPK LPP+R+ DH I L+
Sbjct: 646 MIKKGALGCVIQINAITDQSNVEVGIPKDIQIVLQSFPKVLKEPKGLPPRRSCDHVINLK 705
Query: 617 EGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVD 676
G+ PN+RPYR P +QK +E ++ E+ IR S SP+ SPA++V+KKDG WR CVD
Sbjct: 706 VGSEPPNLRPYRVPHFQKGAMEDIITELFRTQEIRISDSPYVSPAVMVRKKDGSWRLCVD 765
Query: 677 YRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEG 736
YR LN TI +KFP+PII++LLDE+ A++FSKLDL+SGYHQIRM E DIPKTAFRTH G
Sbjct: 766 YRQLNAQTIKNKFPMPIIEDLLDELHGAKVFSKLDLRSGYHQIRMAEGDIPKTAFRTHLG 825
Query: 737 HYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQ 796
HYEY V+PFGLTNAP+TFQALMNQVL P+LRKFVLVFF DILIYS H EH++ V+Q
Sbjct: 826 HYEYNVMPFGLTNAPATFQALMNQVLAPFLRKFVLVFFADILIYSKTQSEHLEHIKLVMQ 885
Query: 797 VLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLG 856
L N LV KKC FG + YLGH+IS EGV+ DP KI D+ N PK+V +R FLG
Sbjct: 886 ALSANQLVVRLKKCEFGLDRVSYLGHIISSEGVSTDPKKISDIKNRKPPKNVTEVREFLG 945
Query: 857 LTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTF 916
+ GYYRRF++ Y + +PL+ LLKK+ F W +AF+ LKE M PVLA+PDF + F
Sbjct: 946 MAGYYRRFIKGYGVICRPLHDLLKKDGFKWGDTQQEAFELLKEKMCNSPVLALPDFSQPF 1005
Query: 917 VLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGC 976
V+ETDA G G+GAVLMQ GRP+AY SK L +A A+SVYE+E +A++ A++KWRHY+LG
Sbjct: 1006 VIETDACGIGIGAVLMQKGRPLAYFSKALGPKAAAQSVYEKEAIAILEALKKWRHYILGG 1065
Query: 977 KFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSR-----K 1031
I+ TDQ+SL+F+ QRL+ Q K + KLM FD+ I+YK G EN ADALSR +
Sbjct: 1066 SLIIKTDQQSLKFMMSQRLVEGIQHKLLLKLMEFDYVIEYKSGKENLVADALSRSPNLKE 1125
Query: 1032 LQFSAISSVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLP 1091
Q I+ V E +D++ D KI+ I T G Y + G L YK RI +
Sbjct: 1126 EQCLPITVVVPEWVQDIKRSYEEDIFAHKILSLIETDGDPERHYKLESGLLKYKGRIYVG 1185
Query: 1092 KTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYE 1151
+T+ ++L+ +H S GGH+GI TY RI LF+W G+K ++ Y+++C CQ K E
Sbjct: 1186 ETTEIRMLLLEAYHASYFGGHSGIRATYHRIKQLFYWPGLKKQVEHYIRECPTCQITKAE 1245
Query: 1152 TLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNA 1211
++ G L PL +P W+ I+MDFI GLPK+ GKD ILVVVDR TKYAHFLALSHPY
Sbjct: 1246 HIHIPGLLNPLEVPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLALSHPYTV 1305
Query: 1212 KEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTE 1271
++V ++F+ I KLHG P IV+DRDRVF S+F+ E+FK KL+FS+A+HPQTDGQTE
Sbjct: 1306 EQVVQIFMDNIHKLHGMPMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQTE 1365
Query: 1272 VVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGT 1331
VN+C+E+YLR +T +P++W WL+ AE+WYNT YH++I+ TPFQALYG PP I +
Sbjct: 1366 RVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQITEFA 1425
Query: 1332 DSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPY 1391
E ++ L L LK ++ +AQ R+K A+K R + L++GDMVYLK+QPY
Sbjct: 1426 IPCNMSEEARVTLEDKALILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQPY 1485
Query: 1392 KLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVN 1451
+ ++ R + KL ++YGP+ VIEK+ AVAYKLQLP+G+ +HPVFHVS LKK + G
Sbjct: 1486 RQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQLKK--HLGAR 1543
Query: 1452 SQPLP--VYMTEEWELKVEPESIIDSR---AGDKGTVEVLVKWKNMPEFENSWEDYTELL 1506
+ P+P + + ++K EP +++ R ++ + L+ W+N+ E +WED + +
Sbjct: 1544 AIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEATWEDASYIQ 1603
Query: 1507 EQFP 1510
FP
Sbjct: 1604 AAFP 1607
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 1006 bits (2600), Expect = 0.0
Identities = 534/1207 (44%), Positives = 747/1207 (61%), Gaps = 123/1207 (10%)
Query: 339 QRLTQTELQ-----ERSRRGLCFKCGEKWGREHICAKKNFQLI-LIEGEDEE--EEEEVF 390
+R+ Q ELQ E+ R+G+CF+C W +EH C K +++ +I G + E E V
Sbjct: 283 RRVVQKELQLVKLDEKRRKGICFRCDGPWSKEHKCPNKELRVLTVINGFEMEVLESNSVE 342
Query: 391 EEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELV 450
EE D + +LS +S GL S + K+KG I + E C F
Sbjct: 343 EEFHDSV----AQFAELSFSSYMGLPSYTTIKMKGSICKGEW-----CHTQFYF------ 387
Query: 451 AELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEV-----QGIPIIQHFFILGLGGTEL 505
+ + +G G + G+C + + + Q + + HF L LG ++
Sbjct: 388 ----------PNFHIRLGTGITVQGLGLCDKVTMTLPVGCGQELELTTHFITLDLGPVDV 437
Query: 506 VLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEY 565
+LG+ WL +LG+ + N++ + + +G+ + ++G+P + KS + +E
Sbjct: 438 ILGIAWLRTLGDCKVNWERHELSFLYHGRTVTLRGDPELDTFKMSLKSFSTKFRLQNKEL 497
Query: 566 FLSYECSEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIR 625
+S Q K LPP + +HAI L G ++R
Sbjct: 498 EVSLNS-------------------------HQNLKGLPPIKGNEHAISLLPGTRAISVR 532
Query: 626 PYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTI 685
PYRYP K +E LV EML GIIR S SPFSSP +LVKKKD WRFCVDYRALN+ TI
Sbjct: 533 PYRYPHAHKEAMEGLVSEMLDNGIIRASKSPFSSPVLLVKKKDQSWRFCVDYRALNRATI 592
Query: 686 PDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPF 745
P+KFPIP+ID+LLDE+ A IFSKLDL++GYHQIRM+ EDI KT FRTH+GH+E+LV+PF
Sbjct: 593 PNKFPIPMIDQLLDELHGAIIFSKLDLRAGYHQIRMKVEDIEKTTFRTHDGHFEFLVMPF 652
Query: 746 GLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVA 805
GL+NAP+TFQ+ MN +LRP+LRKFVLVFF DILIYS N H+EHL VL+VL ++ A
Sbjct: 653 GLSNAPATFQSSMNDMLRPFLRKFVLVFFDDILIYSRNEQEHEEHLAMVLKVLEEHQFYA 712
Query: 806 NQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFV 865
N+KK H+ +GV+ DP+K M W P+ VK LRGFLGLTGYYRRF+
Sbjct: 713 NRKKPY----------HI--TQGVSTDPTKTVAMTKWVTPQSVKELRGFLGLTGYYRRFL 760
Query: 866 RNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGK 925
+ Y LA+PL +LLKK++F WS A +AFD LK M+T PVLA+PDF K
Sbjct: 761 KGYGTLARPLTELLKKDSFVWSESAQEAFDALKRAMSTAPVLALPDFGKV---------- 810
Query: 926 GLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQK 985
L+ + Q K VYERELMA+VL++QKW+HYL+G +F++HTDQK
Sbjct: 811 -----------------HGLTSKEQLKPVYERELMAIVLSIQKWKHYLMGRRFVLHTDQK 853
Query: 986 SLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRKLQ---------FSA 1036
SL+FL EQR + + QKW++KL+ ++F+I YK G++NKAAD LSR +Q A
Sbjct: 854 SLKFLQEQREVSMDYQKWLTKLLHYEFDILYKLGVDNKAADGLSRMVQPTGSFSSMLLMA 913
Query: 1037 ISSVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGK 1096
+ DL EI ++ Q +++E + + Y ++ GRL K R+++PK S
Sbjct: 914 FTVPTVLQLHDLYEEIDSNAHLQHLVKECLSAKQGTSAYTVKEGRLWKKQRLIIPKDSKF 973
Query: 1097 IPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPA 1156
+P+IL E+H +GGH+G+ +T KRI F WEGM DIQ +V KCE+CQR KY TL+PA
Sbjct: 974 LPLILAEYHSGLLGGHSGVLKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPA 1033
Query: 1157 GYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAE 1216
G LQPLPIP+QVW DIS+DF+ GLP DR +KY HF+ L HP+NA +VA
Sbjct: 1034 GLLQPLPIPTQVWEDISLDFVEGLP------------DRLSKYGHFIGLKHPFNAVDVAR 1081
Query: 1217 LFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRC 1276
+FI E+VKLHGFP SIVSDRD FLSSFW + FKL+GTKLK+S+A+HPQTDGQTEV+NR
Sbjct: 1082 IFIHEVVKLHGFPASIVSDRDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRT 1141
Query: 1277 VETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLAS 1336
+ETYLRC A PK W ++L AE WYN+++H+ IKTTPF+ LYGR+PP I++ +
Sbjct: 1142 LETYLRCFASAHPKTWFQYLPRAELWYNSSFHTTIKTTPFKVLYGRDPPPIMRFEANSTK 1201
Query: 1337 VNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSL 1396
E+E + +R+L L +KE+L AQ MK +KHRR+++ + V+LK++PY+ S+
Sbjct: 1202 NCELEGLLKQRDLMLADIKEHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNSV 1261
Query: 1397 ARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLP 1456
+R QKL+ +++GP+ ++E+I VAY+L+LPEGS++H VFHVS LK+ + PLP
Sbjct: 1262 TKRVCQKLAAKYFGPFEIMERIGKVAYRLKLPEGSKIHLVFHVSQLKQVLGDHHQVIPLP 1321
Query: 1457 VYMTEEWELKVEPESIIDSRAGDKGTVEVLVKWKNMPEFENSWEDYTELLEQFPEHHLED 1516
+T + E V PE+++++R + G +E LV W+ +P E++WE +L +QFP L+D
Sbjct: 1322 EVLTADNEFVVVPEAVLETRYNEDGLLEALVHWQGLPVHEDTWEIAKDLKKQFPGLALQD 1381
Query: 1517 KVILQGG 1523
K+ ++GG
Sbjct: 1382 KLHVEGG 1388
Score = 107 bits (267), Expect = 3e-21
Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 2/173 (1%)
Query: 93 RSHLRAVTGRRVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQ 152
R +R + V++PMF+G+ YGWI +VERFFR E E++ +V +++ ALSW+
Sbjct: 119 RPRIRENLLKNVEMPMFDGSGIYGWIARVERFFRSGGYNEAEQLALVSVSVSGEALSWYN 178
Query: 153 WWEEQAPVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNA 212
W + +W K L+ RF ++ P L KQ GSV EY + FE L++ +
Sbjct: 179 WAISRGDFVSWLKLKSGLMLRFGNLKLRGPSQSLFCIKQTGSVAEYVQRFEDLSSQVGGL 238
Query: 213 DREVLKGVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKE 265
D + L+G+FLNGL E++ + ++ ++L +++ A +E S MR KE
Sbjct: 239 DDQKLEGIFLNGLTGEMQELVHMHKPQNLPEMVAVARSME--TSVMRRVVQKE 289
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 998 bits (2579), Expect = 0.0
Identities = 570/1494 (38%), Positives = 822/1494 (54%), Gaps = 102/1494 (6%)
Query: 63 SVSLARSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGN-DAYGWITKV 121
++S+AR+ + + T S P +H R + P ++G D +I +
Sbjct: 39 ALSVARTTEKASTESSGTPAPDRPPKHW------------RPEFPKYDGKTDPLAFINRC 86
Query: 122 ERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRAWEPFKQALIRRFQPELVQN 181
E FF V E+ M ++D A W+ ++ WE FK+ L R+ P L
Sbjct: 87 ESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDNEGTPTWERFKELLNLRYGPPLRSV 146
Query: 182 PFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVFLNGLHEEIKAEMKLYPSEDL 241
P L + ++ +V +Y++ F+ L + +F GL + +++ L
Sbjct: 147 PLFELSACRRTSTVEDYQDRFQALLPRAGRLEEAQQVQLFTGGLLPPLSLQVQQQKPASL 206
Query: 242 ADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGRFSTNSGETRGRSIYPNVSYQS 301
+ M A E + + G + P+
Sbjct: 207 EEAMSLARQFELMEPYLFPATTSAR-------------------GVLPTPAPRPSTGPVV 247
Query: 302 KGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQRLTQTELQERSRRGLCFKCGEK 361
K A T EG+P +RL+Q + +ER R GLC+ C EK
Sbjct: 248 KPAPATVTVEGRPV-----------------------KRLSQAQQEERRRLGLCYNCDEK 284
Query: 362 WGREH--ICAKKNFQLILIEGEDEEEEEEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNR 419
+ R H +C + L +EG EE ++ E+ + E +E V SL++ G+ +
Sbjct: 285 YSRSHNKVCKR----LFFVEGGAIEEGDDTVEDDTE-EATVEAPVF--SLHAVAGIPLGK 337
Query: 420 SFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVC 479
++ +G ++ LVD G+T NFI ++ +PV V NG + GV
Sbjct: 338 PILLQVTLGAASLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVL 397
Query: 480 KNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQDLIIKWELNGQKMCMQ 539
+ + +QG+ +++ L G ++VLG W+A LG I W++ + Q
Sbjct: 398 RRAPITIQGMAFDVDLYVMPLAGYDMVLGTQWMAHLGTT--------IAWDVTTGTVSFQ 449
Query: 540 GEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPT-------ANVTIPELWIKLLTE 592
+ +W+S+ H + + +S S T A T P L LL
Sbjct: 450 HQGR----TVSWQSLPP--HQRADVHAVSTGTSLVAATGSSSSTPAPTTEPALLDGLLGS 503
Query: 593 FPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAGIIRH 652
F +VF EP+ LPP R DHAI L GAP +RPYRYP K+E+E+ M+ G+IR
Sbjct: 504 FDDVFAEPRGLPPPRGRDHAIHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQGLIRR 563
Query: 653 STSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFSKLDL 712
STS FSSP +LVKK DG WRFCVDYRALN +TI D +PIP++DELLDE+ A+ F+KLDL
Sbjct: 564 STSAFSSPVLLVKKADGSWRFCVDYRALNAITIKDAYPIPVVDELLDELHGAKFFTKLDL 623
Query: 713 KSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLV 772
+SGYHQ+RMR ED+ KTAFRTH+G YE+LV+PFGL NAP+TFQALMN +LR YLR+FVLV
Sbjct: 624 RSGYHQVRMRAEDVAKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDILRIYLRRFVLV 683
Query: 773 FFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEGVAAD 832
FF DILIYSN H H+R VL +LR + L + KC+FG S + YLGH+I GV+ D
Sbjct: 684 FFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSKCAFGVSSISYLGHIIGATGVSMD 743
Query: 833 PSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSAGATQ 892
P+K++ +++WP P+ + +RGFLGL GYYR+FV +Y +A PL L KK F WS
Sbjct: 744 PAKVQAVVDWPQPRSARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKKEGFRWSDEVAT 803
Query: 893 AFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSERAQAK 952
AF LK +TT PVLA+PDF K FV+E DAS G GAVL+Q P+A+ S+ ++ R +A
Sbjct: 804 AFHALKHAVTTAPVLALPDFVKPFVVECDASTHGFGAVLLQDKHPLAFFSRPVAPRHRAL 863
Query: 953 SVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLMGFDF 1012
+ YEREL+ +VLA++ WR YL G F+V TD SL++L +QRL Q WV KL+GFDF
Sbjct: 864 AAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLLDQRLATIPQHHWVGKLLGFDF 923
Query: 1013 EIKYKPGIENKAADALSRK-LQFSAISSVQCEDWEDLETEILADDKYQKI--IQEITTQG 1069
++YK G N ADALSR+ A+ ++ ++ +E A + I++ G
Sbjct: 924 TVEYKSGASNVVADALSRRDTDEGAVLALSAPRFDYIERLRAAQTTEPALVAIRDAIQAG 983
Query: 1070 PVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWE 1129
A + +R G +++ +R+ +P +S + IL H GH G+ RT R+ F
Sbjct: 984 TRSAPWALRDGMVMFDSRLYIPPSSPLLHEILAAIH---TDGHEGVQRTLHRLRRDFHSP 1040
Query: 1130 GMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTI 1189
M+ +Q +V+ C+ CQRNK E L+P G L PLP+P+ VW+DI +DF+ LP+ GK I
Sbjct: 1041 AMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPTTVWADIGLDFVEALPRVGGKTVI 1100
Query: 1190 LVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELF 1249
L VVDRF+KY HF+ L+HPY A+ VA+ F +IV+LHG P S+VSDRD VF SSFW EL
Sbjct: 1101 LTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRLHGIPQSMVSDRDPVFTSSFWRELM 1160
Query: 1250 KLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHS 1309
+L GTK+ ++A HPQ+DGQTE N+ + YLRC TG +P+QW +WL WAE+ YNT Y +
Sbjct: 1161 RLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQWVRWLPWAEYIYNTAYQT 1220
Query: 1310 AIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQA 1369
+++ TPF+ +YGR+PP+I V V + A+R+ FL ++ LE+AQ K+
Sbjct: 1221 SLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFLADVRYRLEQAQATHKKYY 1280
Query: 1370 NKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPE 1429
+K R + +VGD+V L+++ SL + KL PR++GPY V+E IN VA +L+LP
Sbjct: 1281 DKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYFGPYRVVEVINPVAVRLELPP 1340
Query: 1430 GSQVHPVFHVSLLKKAPNEGVNSQP-LPVYMTEEWELKVEPESIIDSRAGDKGTVEVLVK 1488
+++H VFHV LLKK S P LP + EPE + SR +G +VLV
Sbjct: 1341 RAKLHDVFHVGLLKKFVGAAPPSPPALPA--VHHGAIDPEPERVTRSRLA-RGVRQVLVH 1397
Query: 1489 WKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRDDTDPLVRPRFGKVYTRK 1542
WK +WED E++P LED++ L+ GRD +G+ Y R+
Sbjct: 1398 WKGESAASATWEDLDTFKERYPAFQLEDELALEEGRD-------VMWGRTYARR 1444
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 996 bits (2576), Expect = 0.0
Identities = 573/1456 (39%), Positives = 819/1456 (55%), Gaps = 112/1456 (7%)
Query: 103 RVDIPMFNGN-DAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVR 161
++D P ++G+ D W+ + E+FFR R T++ + ++ A +W+ E+ +
Sbjct: 472 KIDFPTYDGSVDPLNWLNQCEQFFRGQRTLVTDRTWLASYHLKGAAQTWYYALEQDEGMP 531
Query: 162 AWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGVF 221
W FK+ RF P + L +V +Y + F + R D + +F
Sbjct: 532 TWGRFKEVCTLRFGPPVRGTRLSELARLPFTSTVQDYADRFNAMLGHTRKLDAQQKAELF 591
Query: 222 LNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKE-KGGFGGR 280
+ GL + I+A++ + +DL M A E++ +A ++ RG+++ + G
Sbjct: 592 VGGLPDHIRADVAIRDPQDLQSAMYLARAFEQRAAA----QTTPPPARGFRQSRPGL--- 644
Query: 281 FSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQR 340
R + P + Q G P R + +R
Sbjct: 645 ----PAPPRPLTAPPTAAAQPAGTAA------------------------PARPF---RR 673
Query: 341 LTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEGEDEEEEEEVFEEAEDGEFVL 400
LT E QER R+GLCF C E + R H+C + L +E +D ++E EE D + L
Sbjct: 674 LTPAEQQERRRQGLCFNCDEPYVRGHVCPR----LFYLENDDYIDDEPQ-EEGADLQIAL 728
Query: 401 EGK--------VLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAE 452
E + + +SL++ G+ + + + I ++ LVD G+T+NF+S L++
Sbjct: 729 EQEPPSRAAAIIPTVSLHALAGVRTPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMSR 788
Query: 453 LEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWL 512
L++P V+V NG G+ +++ L V L LG +++LG ++L
Sbjct: 789 LQLPSTPHPTIKVQVANGDNIPCQGMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEFL 848
Query: 513 ASLGNIEANFQDLIIKWELNGQKMCMQG---------EPSFCKVAATWKSIKKTKHDEGE 563
LG I + L + + G+ + G +P+ C V++T
Sbjct: 849 RLLGPILWDCDRLSMSFTKGGRHIIWSGLGAPGAVPPQPAACVVSST------------- 895
Query: 564 EYFLSYECSEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPN 623
PT L LL +F VF EP+ LPP R DH I L GA
Sbjct: 896 ------------PTQ-----PLLDDLLRQFELVFAEPQGLPPARPYDHRIHLLPGAAPVA 938
Query: 624 IRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKV 683
+RPYRYP QK+E+E+ MLA GIIR STSPFS+P +LV+K D WRFC+DYRALN
Sbjct: 939 VRPYRYPQLQKDELERQCSAMLAQGIIRPSTSPFSAPVLLVRKPDNSWRFCIDYRALNAK 998
Query: 684 TIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVL 743
T DKFPIP++DELLDE+ A F+KLDL+SGYHQ+RM D+ KTAFRTHEGHYE+LV+
Sbjct: 999 TSKDKFPIPVVDELLDELHGAHFFTKLDLRSGYHQVRMHPADVEKTAFRTHEGHYEFLVM 1058
Query: 744 PFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHL 803
PFGL+NAP+TFQALMN VLRPYLRK+VLVFF DILIYS H +H+ VL LRD+ L
Sbjct: 1059 PFGLSNAPATFQALMNDVLRPYLRKYVLVFFDDILIYSKTWAEHLQHISIVLHALRDHQL 1118
Query: 804 VANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRR 863
+ KCSFG + YLGHVIS GVA D +K++ + +WP P +GLRGFLGL GYYR+
Sbjct: 1119 HLKRSKCSFGARSVAYLGHVISAAGVAMDAAKVEAVSSWPAPHSARGLRGFLGLAGYYRK 1178
Query: 864 FVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDAS 923
F+R++ +A PL +LL+++ F+W AF +LK +TT PVL +P+F+KTFV++ DAS
Sbjct: 1179 FIRDFGVIAAPLTRLLRRDAFTWDDDTQAAFQQLKTALTTGPVLQMPNFEKTFVVDCDAS 1238
Query: 924 GKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTD 983
G G GAVL QG PVA+ S+ R + YEREL+ +V AV+ WR YL G F V TD
Sbjct: 1239 GTGFGAVLHQGAGPVAFFSRPFVTRHLKLAAYERELIGLVQAVRHWRPYLWGRHFAVRTD 1298
Query: 984 QKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRK----LQFS---- 1035
SL++L +QRL Q +W+SKL GFDFE++Y+PG N AADALSR+ LQ S
Sbjct: 1299 HYSLKYLLDQRLSTVPQHQWLSKLFGFDFEVEYRPGRLNVAADALSRRDAELLQPSAGEL 1358
Query: 1036 ------AISSVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIV 1089
A+S +D+ ++ Q++ G + A + + G LL+ +RI
Sbjct: 1359 GAAAALALSGPSFAFLDDIRRATATSPDSSRLCQQL-QDGTLTAPWRLEDGLLLHGSRIY 1417
Query: 1090 LPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNK 1149
+P + H + GH GI +T R+ A F+ G + + +V+ C CQRNK
Sbjct: 1418 VPNHGDLRHQAILLAHSA---GHEGIQKTLHRLRAEFYVPGDRTLVADWVRTCTTCQRNK 1474
Query: 1150 YETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPY 1209
ETL PAG LQPL +PSQVW+DISMDFI GLPK GK IL VVDRF+KYAHF+ L HPY
Sbjct: 1475 TETLQPAGLLQPLQVPSQVWADISMDFIEGLPKVGGKSVILTVVDRFSKYAHFIPLGHPY 1534
Query: 1210 NAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQ 1269
A VA F IV+LHGFP+SIVSDRD VF W +LFK AG L+ S+A+HPQTDGQ
Sbjct: 1535 TAASVARAFFDGIVRLHGFPSSIVSDRDPVFTGHVWRDLFKCAGVSLRMSTAFHPQTDGQ 1594
Query: 1270 TEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIK 1329
+EVVN+ + YLRCVTG +P+ W WLSWAE+ YNT++H+A++ TPF+ +YGR PP I+
Sbjct: 1595 SEVVNKVIAMYLRCVTGDRPRAWVDWLSWAEYCYNTSFHTALRATPFEVVYGRPPPPILP 1654
Query: 1330 GTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQ 1389
A E++ +R+ L +++ L +AQ K+ + RD++L GD V+L++
Sbjct: 1655 YQAGSARTAAAEELLRDRDNILAEVRQRLVQAQQLSKRYYDAGHRDMELADGDWVWLRLL 1714
Query: 1390 PYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEG 1449
++SL R KL PR+ GP+ V+E+I VAY+L+LPEG+++H VFHV LLK+ E
Sbjct: 1715 HRPVQSLEPRAKGKLGPRYAGPFRVLERIGKVAYRLELPEGARLHDVFHVGLLKRHKGE- 1773
Query: 1450 VNSQPLPVYMTEEWELKVEPESIIDSRAGDKGTVEVLVKWKNMPEFENSWEDYTELLEQF 1509
Q + + L P ++ ++ +GT +LV+W+ + E +WE + +
Sbjct: 1774 PPEQRAGLPPVQNGRLLPAPLKVLRAQQ-RRGTWHILVQWQGLSPEEATWEPLDDFRGLY 1832
Query: 1510 PEHHLEDKVILQGGRD 1525
P+ LED++ GRD
Sbjct: 1833 PDFQLEDELFAHAGRD 1848
>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
gi|25403233|pir||G86474 probable protein gypsy/Ty3
element polyprotein [imported] - Arabidopsis thaliana
Length = 1447
Score = 980 bits (2534), Expect = 0.0
Identities = 586/1556 (37%), Positives = 863/1556 (54%), Gaps = 161/1556 (10%)
Query: 1 MVLTRSAMESRV--------DNLERSITEMKEEAHEQFEELRRLF--MSRERRRTRGRSN 50
MV+TRS+ E V D + +T+++E EQ + + + M RT +
Sbjct: 1 MVVTRSSQEEDVKGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMADMMSAMSRTTAKRV 60
Query: 51 TPRHRRVSRDHNSVSLARSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGR-------- 102
T + + R S+ RS S S V R+ + V +
Sbjct: 61 TEGEKVLDR-----SVPRSSTSSMARSGFVEHQRDFQRDFRPEMVRQEVNNQYGNLTRLG 115
Query: 103 RVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQA---- 158
++D P F+G+ W+ KVE FF + E KV+MV I + A +W + +
Sbjct: 116 KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLD 175
Query: 159 PVRAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLK 218
W + + L RF+ + +P L ++ ++EY + FEL+ + N E L
Sbjct: 176 VFFNWPEYVKLLKDRFE-DACDDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLV 233
Query: 219 GVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFG 278
V+L GL + + ++++ + + D + E + K+ W +KG
Sbjct: 234 SVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYERAH-------PKKTVSSTWSQKG--- 283
Query: 279 GRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGG 338
T SG SY+ + E K HL
Sbjct: 284 ----TRSGG----------SYRP-----VKEVEQKSDHL--------------------- 303
Query: 339 QRLTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEGEDEEEEEEVFEEAEDGEF 398
GLC+ C EK+ EH K QL ++ ++E E+ +D E
Sbjct: 304 --------------GLCYFCDEKFTPEHYLVHKKTQLFRMDVDEEFEDAVEVLSDDDHE- 348
Query: 399 VLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVV 458
+ + Q+S+N+ G++ ++ VKG + +R++ IL+D G+T NFI + A+L V
Sbjct: 349 --QKPMPQISVNAVSGISGYKTMGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVE 406
Query: 459 ATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNI 518
+ V V +G + G K ++Q ++ L G ++VLG+ WL +LG I
Sbjct: 407 SAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRI 466
Query: 519 EANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIK--KTKHDEGEEYFLSYEC----- 571
F+ L +++ Q++ + G + + + IK K + + ++ L+ C
Sbjct: 467 SWEFKKLEMQFFYKNQRVWLHG-----IITGSVRDIKAHKLQKTQADQIQLAMVCVREVV 521
Query: 572 SEEEP--------TANVTIPELWIKLLTEFPEVFQEPKELPPKRAT-DHAILLQEGAPIP 622
S+EE T++V + ++ EFP+VF EP +LPP R DH I L EGA
Sbjct: 522 SDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPV 581
Query: 623 NIRPYRYPFYQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNK 682
N RPYRY +QK+EI+K+V++M+ +G I+ S+SPF+SP +LVKKKDG WR CVDY LN
Sbjct: 582 NQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNG 641
Query: 683 VTIPDKFPIPIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLV 742
+T+ D+F IP+I++L+DE+G + +FSK+DL++GYHQ+RM +DI KTAF+TH GH+EYLV
Sbjct: 642 MTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLV 701
Query: 743 LPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNH 802
+ FGLTNAP+TFQ+LMN V R +LRKFVLVFF DILIYS++++ HKEHLR V +V+R +
Sbjct: 702 MLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHK 761
Query: 803 LVANQKKCSFGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYR 862
L A K +LGH IS + DP+KI+ + WP P VK +RGFLG GYYR
Sbjct: 762 LFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYR 813
Query: 863 RFVRNYSKLAQPLNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDA 922
RFVRN+ +A PL+ L K + F WS A AFD LK ++ PVLA+P F K F++ETDA
Sbjct: 814 RFVRNFGVIAGPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDA 873
Query: 923 SGKGLGAVLMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHT 982
G+G+ AVLMQ G P+AY+S+ L + S+YE+EL+A + AV+KWRHYLL FI+ T
Sbjct: 874 CGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKT 933
Query: 983 DQKSLRFLAEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSR----KLQFSAIS 1038
DQ+SL++L EQRL QQ+W+ KL+ FD+EI+Y+ G EN ADALSR ++ A+S
Sbjct: 934 DQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALS 993
Query: 1039 SVQCEDWEDLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIP 1098
V+C+ ++++ +D + II + Y + L K++IV+P
Sbjct: 994 IVECDFLKEIQVAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITN 1053
Query: 1099 IILQEFHDSAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGY 1158
+LQ H S +GG +G +++R+ +LF+W+GM DIQ +++ C CQ+ K + G
Sbjct: 1054 KLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGL 1113
Query: 1159 LQPLPIPSQVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELF 1218
LQPLPIP ++W D+SMDFI GLP + GK I+VVVDR +K AHF+AL+HPY+A VA+ F
Sbjct: 1114 LQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAF 1173
Query: 1219 IKEIVKLHGFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVE 1278
+ + K HG PTSIVSDRD +F S FW E FKL G +L+ SSAYHPQ+DGQTEVVNRC+E
Sbjct: 1174 LDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLE 1233
Query: 1279 TYLRCVTGAKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVN 1338
YLRC+ A+P W KWL AE+WYNTNYHS+ + TPF+ +YG+ PP+ + + V
Sbjct: 1234 NYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVA 1293
Query: 1339 EVEKMTAERNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLAR 1398
V + ER L LK +L +AQ+RMKQ A++HR + +GD VY+K+QPY+ +S+
Sbjct: 1294 VVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353
Query: 1399 RKNQKLSPRFYGPYPVIEK-----INAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQ 1453
R NQKLSP+++GPY +IEK + V QLP V P + +KAP
Sbjct: 1354 RVNQKLSPKYFGPYKIIEKCGEVMVGNVTTSTQLP---SVLP----DIFEKAPE------ 1400
Query: 1454 PLPVYMTEEWELKVEPESIIDSRAGDKGTVEVLVKWKNMPEFENSWEDYTELLEQF 1509
Y+ E +K R G T+ VLVKW P E +W+ + ++F
Sbjct: 1401 ----YILERKLVK---------RQGRAATM-VLVKWIGEPVEEATWKFLFDRQQKF 1442
>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 976 bits (2524), Expect = 0.0
Identities = 562/1424 (39%), Positives = 806/1424 (56%), Gaps = 62/1424 (4%)
Query: 107 PMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRAWEPF 166
P FNG++ W + E +F + + V++ + A W Q Q W
Sbjct: 151 PQFNGDNPQLWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGATWFEL 210
Query: 167 KQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMR----NADREVLKGVFL 222
+ RF + Q + Q SV +Y + F+ + + + D F+
Sbjct: 211 CDRVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDPAYFVTKFV 270
Query: 223 NGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGW-KEKGGFGGRF 281
+GL + I+ + + +DL ALL EE ++ +K+ + + K K
Sbjct: 271 DGLKDHIRVVVMVQRPQDLDSACTVALLQEEALEGVQSVSNKKNETTTFLKTKPSH---- 326
Query: 282 STNSGETRGRSI-YPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQR 340
+ S + RSI + N+ +G ++G + K L+
Sbjct: 327 NLTSPTFQARSIPFTNIE-DKRGVEFSKGRDDKVSALRS--------------------- 364
Query: 341 LTQTELQERSRRGLCFKCGEKWGREHICAKKNFQLILIEG-----EDEEEEEEVFEEAED 395
R +GLCF CGEKWGR+H CA QL ++E + + EE E A +
Sbjct: 365 -------YRRSKGLCFVCGEKWGRDHKCAT-TVQLHVVEELINALKTDPEENCNSEGAPE 416
Query: 396 GEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEI 455
E E ++ +S + G S++S +++G + E+L+LVD G+T +FI +L A+L
Sbjct: 417 SE---EDSLMAISFQALNGTDSSKSIRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCG 473
Query: 456 PVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASL 515
V+V +G++ N QG F +L LG + +LGMDWL
Sbjct: 474 LQKLNQAIKVQVADGSQLFCDSFLPNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQF 533
Query: 516 GNIEANFQDLIIKWELNGQKMCMQG-EPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEE 574
++ ++ I ++ +GQ + +QG P + +G L + E
Sbjct: 534 SPMQVDWVHKWIAFQHHGQAVQLQGIHPQLSTCFPISNDQLQGMSKKGAVMCLVHLNVAE 593
Query: 575 EPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQK 634
TA T+PE+ +L EF E+F EP ELPPKR DH I L EGA N+RPYRY K
Sbjct: 594 TLTAT-TVPEIVQPILNEFQEIFSEPTELPPKRNCDHHIPLVEGAKPVNLRPYRYKPALK 652
Query: 635 NEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPII 694
+EIE+ V EML +G+I+ S+SPFSSPA+LVKKKDG WR C+DYR LN VT+ K+P+P+I
Sbjct: 653 DEIERQVAEMLRSGVIQPSSSPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVI 712
Query: 695 DELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTF 754
DELLDE+ ++ FSKLDL++GYHQIRM E D KTAF+TH GHYEY V+ FGLT AP+TF
Sbjct: 713 DELLDELAGSKWFSKLDLRAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPATF 772
Query: 755 QALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQ 814
+ MN+ L P LRKF LVFF DILIYS ++LH +H+R VLQ+L + KCSF Q
Sbjct: 773 LSAMNETLSPVLRKFALVFFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSKCSFAQ 832
Query: 815 SELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQP 874
E+ YLGHVI GVA DP+KI+D+++WP P +K LRGFLGL GYYR+FVR++ +++P
Sbjct: 833 QEISYLGHVIGAAGVATDPAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFGLISKP 892
Query: 875 LNQLLKKN-NFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQ 933
L QLLKK F W+ AF +LK+ + PVLA+PDF K F +ETDAS G+GAVL Q
Sbjct: 893 LTQLLKKGIPFKWTPEIESAFQQLKQALVAAPVLALPDFSKHFTIETDASDVGIGAVLSQ 952
Query: 934 GGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQ 993
P+AY+S+ L + + S YE+E MA++LAV+ WR YL +FI+ TD SL L EQ
Sbjct: 953 EKHPIAYLSRALGPKTRGLSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHSLMHLTEQ 1012
Query: 994 RLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRK----LQFSAISSVQCEDWEDLE 1049
RL QQK +KL+G ++I Y+ G+ N AADALSR+ + +AIS ++L
Sbjct: 1013 RLHTPWQQKAFTKLLGLQYKICYRKGVSNAAADALSRRESPISEVAAISECIPSWMQELM 1072
Query: 1050 TEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAV 1109
D + ++++ E+ Y + +G L YK +I + + ++ E H + +
Sbjct: 1073 QGYQLDGQSKQLLAELAISPNSRKDYQLCQGILKYKGKIWVGNNTALQHKLVNELHATPL 1132
Query: 1110 GGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVW 1169
GGH+G TY+++ +LF W GMK I+ +Q C++C + K + G LQPLP+P+ W
Sbjct: 1133 GGHSGFPVTYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQPLPVPAGAW 1192
Query: 1170 SDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFP 1229
IS+DFI GLP++ + ILVVVD+F+KY+HF+ LSHP+NA VA+ F+K I KLHG P
Sbjct: 1193 QTISLDFIEGLPRSSHYNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKNIYKLHGLP 1252
Query: 1230 TSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKP 1289
+I+SDRD++F S FW +LF GT L SSAYHPQ+DGQTE VN+C+E YLRC A P
Sbjct: 1253 RAIISDRDKIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYLRCFVHAAP 1312
Query: 1290 KQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNL 1349
+W WL AEFWYNT++HS + TPF+ LYG P G D + ++ + ER
Sbjct: 1313 HKWSSWLYLAEFWYNTSFHSTLNKTPFEVLYGYTPSHFGIGLDD-CQIADLHEWHTERKF 1371
Query: 1350 FLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFY 1409
L+++L +AQ +MK QA+K R Q VGD VYLK+QPY +A+R KL+ R+Y
Sbjct: 1372 MQQLLQQHLNRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRYY 1431
Query: 1410 GPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEWELKVEP 1469
GP+ V+ ++ VAY +QLP S +HPVFHVS LK A G + + T L+V P
Sbjct: 1432 GPFQVMSRVGTVAYHIQLPATSSIHPVFHVSQLKAA--VGFSKKVQDELPTSLGALQV-P 1488
Query: 1470 ESIIDSR---AGDKGTVEVLVKWKNMPEFENSWEDYTELLEQFP 1510
+D R G++ +++L W + E++WED +L +FP
Sbjct: 1489 FQFLDKRLVKKGNRSVLQLLTHWYHSSPSESTWEDMEDLFARFP 1532
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 965 bits (2495), Expect = 0.0
Identities = 557/1449 (38%), Positives = 789/1449 (54%), Gaps = 91/1449 (6%)
Query: 102 RRVDIPMFNGN-DAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPV 160
++ D P ++G D ++ K E +FR R E+V M ++D +W+ E
Sbjct: 58 KKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDEGT 117
Query: 161 RAWEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELLAAPMRNADREVLKGV 220
W FK+ + RF P L P L ++ G+V EY F+ L D +
Sbjct: 118 PTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQRVQL 177
Query: 221 FLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFGGR 280
F GL + ++++ E LA A+ L + M + R
Sbjct: 178 FTGGLLPPLSHAVRIHHPETLA----AAMSLARQVELMERDRPAPPPLRA---------- 223
Query: 281 FSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGGQR 340
RG P P +G + N +R
Sbjct: 224 ------PPRGLLPAPAPRLALPAPAQQLALPAPPAAAPQGRDAANP------------RR 265
Query: 341 LTQTELQERSRRGLCFKCGEKWGREH--ICAKKNFQLILIEGEDEEEEEEVFEEAEDGEF 398
LT E+ ER R+GLCF C EK+ R H C + L ++G E ++V E +
Sbjct: 266 LTPEEMAERCRQGLCFNCNEKFTRGHNRFCRR----LFFVDGV---EIDDVAIEGDAAAA 318
Query: 399 VLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVV 458
+ + SL++ G+ + +++ +G+ +L L+D G+T +FI +E +P+
Sbjct: 319 AGDTEAPVFSLHAVAGVPIADTIQLQVTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQ 378
Query: 459 ATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNI 518
++ V NG R GV ++ + G F++ L G ++VLG WL +LG I
Sbjct: 379 SSPRMTAIVANGERVACPGVIRDAAFTINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPI 438
Query: 519 EANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTA 578
+F + ++ +GQ+ WK + T + T
Sbjct: 439 VWDFTSRSMAFQRDGQRFA-------------WKGVASTS-------------TTHLRTL 472
Query: 579 NVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIE 638
L +LL + +VF EP LPP R DHAI+L+ + +RPYRYP K+E+E
Sbjct: 473 AAASGTLLDELLVAYEDVFGEPTGLPPPRGRDHAIVLKPSSAPVAVRPYRYPAAHKDELE 532
Query: 639 KLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELL 698
+ M+ G++R S SPFSSP +LVKK DG WRFCVDYRALN +T+ D FPIP++DEL
Sbjct: 533 RQCAAMIEQGVVRRSDSPFSSPVLLVKKADGSWRFCVDYRALNALTVKDAFPIPVVDELH 592
Query: 699 DEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALM 758
A F+KLDL+SGYHQ+RMR ED+ KTAFRTH+G YE+LV+PFGL NAP+TFQALM
Sbjct: 593 G----ARFFTKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALM 648
Query: 759 NQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELI 818
N VLRP+LR+FVLVFF DILIYS H HLR VL VLR + L + KC+FG +
Sbjct: 649 NDVLRPFLRRFVLVFFDDILIYSETWTDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVS 708
Query: 819 YLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQL 878
YLGHVIS+ GVA DP+K++ + W +P+ + +R FLGL GYYR+FV NY +A PL L
Sbjct: 709 YLGHVISEAGVAMDPAKVQAIHEWLVPRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTAL 768
Query: 879 LKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPV 938
KK+ FSW+ AFD LK +T+ PVLA+PDF K F +E DAS G GAVL+Q G PV
Sbjct: 769 TKKDGFSWTEDTAAAFDALKAAVTSAPVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPV 828
Query: 939 AYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGE 998
A+ S+ + R +A + YEREL+ +V AV+ WR YL G +F+V TD SL++L +QRL
Sbjct: 829 AFFSRPVVLRHRALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATI 888
Query: 999 EQQKWVSKLMGFDFEIKYKPGIENKAADALSRK-LQFSAISSVQCEDWEDLET--EILAD 1055
Q WV KL+GFDF ++YKPG N ADALSR+ + AI ++ ++ + +
Sbjct: 889 PQHHWVGKLLGFDFAVEYKPGAANTVADALSRRDTEEGAILALSAPRFDFISKLHDAQRQ 948
Query: 1056 DKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGI 1115
D +++ + G + + L Y + + +P S I++ H+ GH G+
Sbjct: 949 DPALTALRDEVSAGTRTGPWALVDDLLQYNSWLYIPPASPLAREIIEATHED---GHEGV 1005
Query: 1116 FRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMD 1175
RT R+ F MK +Q +V+ C +CQR K E L+PAG L PLP+P VW+DI++D
Sbjct: 1006 KRTMHRLRREFHIPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVWTDIALD 1065
Query: 1176 FIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSD 1235
FI LP+ GK IL VVDRF+KY HF+ L+HPY+A+ VA+ F EIV LHG P S+VSD
Sbjct: 1066 FIEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQSMVSD 1125
Query: 1236 RDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKW 1295
RD +F S+FW EL +L GTKL ++A+HPQ+DGQ+E NR + YLRC+TG +P+QW +W
Sbjct: 1126 RDPIFTSTFWRELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRW 1185
Query: 1296 LSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLK 1355
L WAEF +NT Y S+++ TPF+ +YGR+PP I V V K ER FL ++
Sbjct: 1186 LPWAEFIFNTAYQSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFLFDIR 1245
Query: 1356 ENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVI 1415
LE+AQ K +KH R + +VGD L+++ SL + KL PRFYGPY +
Sbjct: 1246 YRLEQAQAVQKLHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGPYRIT 1305
Query: 1416 EKINAVAYKLQLPEGSQVHPVFHVSLLKK--APNEGVNSQPLPVYMTEEWELKVEPESII 1473
E IN VA +L+LP G+++H VFH+ LLKK P G P++ + EPE +
Sbjct: 1306 ELINDVAVRLELPAGARLHDVFHIGLLKKFHGPPPGAPPALPPLH---HGAIAPEPERAV 1362
Query: 1474 DSRAGDKGTVEVLVKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRDDTDPLVRP 1533
R +G + LV+WK +WED L ++P LED++ L+ G D
Sbjct: 1363 RFRLA-RGVRQALVQWKGESPASATWEDIEVLRAKYPALQLEDELSLEEGGD-------V 1414
Query: 1534 RFGKVYTRK 1542
+GK YTR+
Sbjct: 1415 MWGKTYTRR 1423
>gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1513
Score = 956 bits (2472), Expect = 0.0
Identities = 515/1185 (43%), Positives = 728/1185 (60%), Gaps = 63/1185 (5%)
Query: 357 KCGEKWGREHIC-AKKNFQLILIEGEDEEEEEEVFEEAEDGEFVLEG-----------KV 404
K E W H C KK +L+E E+ E EEV E + E VLE ++
Sbjct: 363 KHDEAWFPGHQCKVKKALNALLLEEEEYEGTEEVGREKKAQEKVLEETEHAPEEIDQEEL 422
Query: 405 LQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIPVVATSEYV 464
+ +S N+ +G T +F V +I R + LVD G+ S F+ QE + P+V+T
Sbjct: 423 MYVSQNAMQGATRPDTFSVIIQINGRRAVGLVDSGSPSTFMDQEYAIRNDCPLVSTDSKK 482
Query: 465 VEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLGNIEANFQD 524
V V G ++ ++ ++QG F ++ L G +++LG DW+ I + +
Sbjct: 483 VVVAGGGELKSEVQVPDILYQIQGETFSNKFNLIPLKGYDIILGADWIYKYSPITLDLKK 542
Query: 525 L---IIKWE--LNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEPTAN 579
I K E + Q G+ + K I+K G + ++ E + +
Sbjct: 543 RELGITKGEKVITLQDFTNTGKHLLVDSSKVDKIIRKG--GLGYLFQITQVAEESDVEES 600
Query: 580 VTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEK 639
++IP+ +L FP V ++PK LPP+R DH I L++GA PN+RPYR P +QK +EK
Sbjct: 601 ISIPDDIQDILQRFPTVLEKPKGLPPQRGCDHVITLKDGAIPPNLRPYRVPHHQKEAMEK 660
Query: 640 LVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLD 699
++ E++ + I+ S SP+SSPA++V+KKDG WR CVDYR LN T+ +KFP+PII++LLD
Sbjct: 661 IIAELIESKEIQVSNSPYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIEDLLD 720
Query: 700 EIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMN 759
E+ A+IF+KLDL SGYHQIRM DIPKTAFRTH GHYEY V+PFGLTNAP+TFQ+LMN
Sbjct: 721 ELNGAKIFTKLDLMSGYHQIRMSRPDIPKTAFRTHLGHYEYQVMPFGLTNAPATFQSLMN 780
Query: 760 QVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIY 819
QVL P+ RKFVLVFF DILIYS + + HKEH+R VLQVL+ N+LV KKC+FG S + Y
Sbjct: 781 QVLAPFFRKFVLVFFDDILIYSKDREEHKEHIRLVLQVLKANNLVIKPKKCAFGLSSVSY 840
Query: 820 LGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLL 879
LGH+IS+ GVA DP K++ +++WP+PK+V LR FLG+TGYYRRF++ Y + +PL+ +L
Sbjct: 841 LGHIISQNGVATDPGKVEKIVSWPIPKNVTDLRKFLGMTGYYRRFIQGYVLICRPLHDML 900
Query: 880 KKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVA 939
KK F W T+AF LK+ M + PVL +PDF K F +E DA G G+GAVLMQG RP+A
Sbjct: 901 KKEGFQWGEKQTEAFKFLKQKMCSSPVLTLPDFSKEFTIEADACGTGIGAVLMQGDRPIA 960
Query: 940 YMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEE 999
+ SK+L +A A+S+YE+E MA++ A++KWRHY LG K ++ TDQ+SL+ + QRL+
Sbjct: 961 FYSKSLGPKAAAQSIYEKEAMAILEALKKWRHYFLGSKLVIKTDQQSLKHMMNQRLVEGI 1020
Query: 1000 QQKWVSKLMGFDFEIKYKPGIENKAADALSRKLQ-------FSAISSVQCEDWEDLETEI 1052
Q K + KLM +D+ I+YK G +N ADALSR Q +AI+ V + D++
Sbjct: 1021 QHKLLLKLMEYDYIIEYKAGKDNVVADALSRLPQDQLQTEICNAITVVIPKWIIDVQNSY 1080
Query: 1053 LADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGH 1112
D + KI+ I T Y G L +K RI + + + +++++H SA GGH
Sbjct: 1081 EGDVQAHKILSMIGTNSDPDQHYSFENGILRFKGRIYVGEETSIRTNLIRDYHCSAFGGH 1140
Query: 1113 AGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDI 1172
+G+ T+ RI ALF+W G+K ++ ++++C +CQ K E ++ G L PL + W+ I
Sbjct: 1141 SGMRATHHRIKALFYWPGLKKTVEMFIRECPVCQITKVEHIHIPGLLNPLEVLDMAWTHI 1200
Query: 1173 SMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSI 1232
+MDFI GLPK+ KD ILVVVDR TKYAHFLALSHPY+ ++V E+F+ I +LHG P +I
Sbjct: 1201 TMDFIEGLPKSKWKDAILVVVDRLTKYAHFLALSHPYSVEQVVEIFMNNIHRLHGMPMAI 1260
Query: 1233 VSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQW 1292
+ DRDR+F S + E+FK +L+FS++YHPQTDGQTE VN+C+E+YLR +T +P QW
Sbjct: 1261 IIDRDRIFTSQLFQEIFKSMKVQLRFSTSYHPQTDGQTERVNQCLESYLRNMTFQEPHQW 1320
Query: 1293 PKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLD 1352
WLS A +WYNT YH++++ TPFQALYG PP I + S N + ER+
Sbjct: 1321 YSWLSLAGWWYNTTYHTSLQMTPFQALYGYPPPQI---NEFSISCNVSAEARTERS---- 1373
Query: 1353 TLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPY 1412
L VGDMVY+K+QPY+ + R + KL +FYGP+
Sbjct: 1374 -------------------------LNVGDMVYIKLQPYRQTAFGIRGSLKLRSKFYGPF 1408
Query: 1413 PVIEKINAVAYKLQLPEGSQVHPVFHVSLLKK-APNEGVNSQPLPVYMTEEWELKVEPES 1471
V+EKI VAYKLQLPE + +HPVFHVS LKK V LP M + ++K +P +
Sbjct: 1409 KVLEKIGQVAYKLQLPEDASIHPVFHVSQLKKHLGQRAVPMSNLP-SMGPDGQIKTQPVA 1467
Query: 1472 IIDSRAGDKGTVEV---LVKWKNMPEFENSWEDYTELLEQFPEHH 1513
++ R + V V L+ W+N+ + +WED + +P H
Sbjct: 1468 VLQRRMIPRNGVAVTQWLILWENLGPADATWEDAAVIQSMYPTFH 1512
>gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 945 bits (2443), Expect = 0.0
Identities = 541/1439 (37%), Positives = 806/1439 (55%), Gaps = 84/1439 (5%)
Query: 103 RVDIPMFNGNDAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRA 162
RV+ P F+G++ W T E +F + VE + + + RA SW Q + + +
Sbjct: 174 RVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLS 233
Query: 163 WEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFEL----LAAPMRNADREVLK 218
W F + L RF E ++ L Q G+V EY E F + L+A NAD
Sbjct: 234 WSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYT 293
Query: 219 GVFLNGLHEEIKAEMKLYPSEDLADLMDRALLLEEKNSAMRGGKSKEEDKRGWKEKGGFG 278
F++GL ++IKA + + +L AL+ EE +A R +S+
Sbjct: 294 MRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQEEATTARRWRRSEPS------------ 341
Query: 279 GRFSTNSGETRGRSIYPNVSYQSKGAGGTQGNEGKPQHLKEGTENTNNEGKIPERKWNGG 338
S+++G G + + + S K+ T++ ++ K+ +
Sbjct: 342 ---SSHAGPKTGVQLSASTKWTSN---------------KDSTQSASHSDKLESLR---- 379
Query: 339 QRLTQTELQERSRRGLCFKCGEKWGREHIC-------AKKNFQLILIEGEDEEEEEEVFE 391
+ R +GLC KC EKW H C A + +L++ E E + E
Sbjct: 380 --------RFRRAKGLCDKCAEKWNPGHKCAATAQLHAMEEVWSLLVDEEVPESDLSPPE 431
Query: 392 EAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVA 451
A + FV +S ++ G T ++ K+ G I +LIL+D G++ F++ +L
Sbjct: 432 PAPEQLFV------TISKSAWTGSTGRQTLKLNGSIQNHPLLILIDSGSSHTFLNDQLRP 485
Query: 452 ELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDW 511
L+ S V+V NGA + ++Q L L ++V+GMDW
Sbjct: 486 HLQGVTSMASTLQVQVANGAMVTCHYKLLQAQWQIQNCSFTSDVSFLPLPYYDMVVGMDW 545
Query: 512 LASLGNIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYEC 571
L S + ++ + G + +QG + + + + S
Sbjct: 546 LESFSPMRVDWAQKWLIIPYQGSSVLLQGNTAGVPADTVIELL----------FMESASS 595
Query: 572 SEEEPTANVTIPELWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPF 631
P ++ I LL +F VF EP+ LPP R DHAI L EGA ++RPYRYP
Sbjct: 596 VSSSPDSHPAIQ----ALLQQFSSVFAEPQGLPPSRDCDHAIPLVEGAQPVSVRPYRYPP 651
Query: 632 YQKNEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPI 691
K++IEK V+EML G+I+ S S F+SP +LVKKKD WRFCVDYR LN +T+ K+P+
Sbjct: 652 ALKDKIEKQVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNALTLKSKYPV 711
Query: 692 PIIDELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAP 751
P+ D+L+DE+ ++ FSKLDL++GYHQI ++ + KTAF+TH GHYE+ V+ FGLT AP
Sbjct: 712 PVFDQLIDELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVMAFGLTGAP 771
Query: 752 STFQALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCS 811
+TF + MN+ L+P LRK LVFF DILIYS + + H HL++VLQ+L ++ KC
Sbjct: 772 NTFLSAMNETLKPVLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLLLSDNWKVKLSKCE 831
Query: 812 FGQSELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKL 871
F ++ YLGH+IS++GV+ PSKI+ + +W +P K LR FLGL G+YR+FV+++ +
Sbjct: 832 FAKTNTAYLGHIISEQGVSTYPSKIQAISSWAVPTSAKELRCFLGLAGFYRKFVKHFGII 891
Query: 872 AQPLNQLLKKNN-FSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAV 930
++PL LLKK+ F W+ ++AF+ LK+ + T PVLA+PDF + F + TDAS G+GAV
Sbjct: 892 SRPLFDLLKKHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFCIHTDASYYGVGAV 951
Query: 931 LMQGGRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFL 990
LMQ G P+A++SK L + Q S YE+E MA++LA+ +WR YL +FI++TD +SL L
Sbjct: 952 LMQSGHPLAFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAEFIIYTDHRSLAQL 1011
Query: 991 AEQRLMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRKLQ----FSAISSVQCEDWE 1046
EQRL QQK +KL G ++I Y+ G++N AADALSRK+Q AIS +
Sbjct: 1012 NEQRLHTIWQQKMYTKLAGLQYKIVYRKGVDNGAADALSRKVQEDSHCCAISHSVPTWLQ 1071
Query: 1047 DLETEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHD 1106
++ D ++++ ++ A + + +G + +KNRI L +LQ HD
Sbjct: 1072 EVVEGYDKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGNLQLQQKVLQAMHD 1131
Query: 1107 SAVGGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPS 1166
+AVGGH+G TY ++ +F+W GM+ D+ YVQ C +CQ++K + G LQPL +P
Sbjct: 1132 TAVGGHSGAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQPLEVPP 1191
Query: 1167 QVWSDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLH 1226
Q W IS+DFI GLP++ + ILVVVD+F+KY HFL L HP+ A +VA +F+ + KLH
Sbjct: 1192 QAWHTISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLDNVYKLH 1251
Query: 1227 GFPTSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTG 1286
G P +I+SDRDR+F SSFW +LF++ GT L SS+YHPQ+DGQTE +N+C+ET+LRC
Sbjct: 1252 GLPVNIISDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLETFLRCYVH 1311
Query: 1287 AKPKQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAE 1346
P +W WLS AE+WYNT HS + TPF+ LYG P D++ E+E E
Sbjct: 1312 TCPSRWSAWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQPELETWLKE 1371
Query: 1347 RNLFLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSP 1406
R L +K +L +AQ+RMK+QA+K R + VGD VYLK+QPY S+A R N KLS
Sbjct: 1372 RELMTKVIKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNHKLSF 1431
Query: 1407 RFYGPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEWELK 1466
+F+GP+ + +++ +VAY+L LP S +HP+FHVS LK+ G + + P + ++
Sbjct: 1432 KFFGPFQITDRLGSVAYRLALPASSSIHPIFHVSQLKRV--IGRDQRASPQLPQDVGPIQ 1489
Query: 1467 VEPESIIDSRAGDKG---TVEVLVKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQG 1522
V P I+ R D+G +V V W M E +WED L +FP+ + D+ +G
Sbjct: 1490 V-PTRILQRRFIDRGGELIAQVKVVWSGMTEDLATWEDVEALRARFPKALIWDQAGARG 1547
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 931 bits (2407), Expect = 0.0
Identities = 506/1213 (41%), Positives = 707/1213 (57%), Gaps = 60/1213 (4%)
Query: 339 QRLTQTELQERSRRGLCFKCGEKWGREH--ICAKKNFQLILIEGEDEEEEEEVFEEAEDG 396
+RL+Q E ER R GLC+ C EK+ R H +C + + I+G + E+ +A+
Sbjct: 197 KRLSQEEQAERRRLGLCYNCDEKYSRGHNRVCRR----IFYIDGVTLTDAEDAALDADQ- 251
Query: 397 EFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCGATSNFISQELVAELEIP 456
+G+ SL + G+ + +V+ +G + L+D +T NFI++E +
Sbjct: 252 ----DGEAPVFSLQAVAGVPICDTMQVRVMLGAVTLTALLDTSSTHNFIAEEAARRTNLA 307
Query: 457 VVATSEYVVEVGNGARERNSGVCKNLKLEVQGIPIIQHFFILGLGGTELVLGMDWLASLG 516
+ V NG + + GV + + + G F++ L G +LVLG W+ +LG
Sbjct: 308 IQPKPRLTATVANGEKIQCPGVLRQAPITIDGEEFHVDLFVMPLAGYDLVLGTQWMVTLG 367
Query: 517 NIEANFQDLIIKWELNGQKMCMQGEPSFCKVAATWKSIKKTKHDEGEEYFLSYECSEEEP 576
I +F + + +G ++ W + + EP
Sbjct: 368 PITWDFTARTMSFSRHGMEV-------------RWSDV----------------AARPEP 398
Query: 577 TANVTIPE--LWIKLLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQK 634
T V L LL F VF EP LPP+RA DH+I+L+ GA +RPYRY K
Sbjct: 399 TVAVIAASEVLLDGLLASFEGVFAEPSGLPPQRARDHSIVLKPGALPVAVRPYRYLAAHK 458
Query: 635 NEIEKLVKEMLAAGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPII 694
+E+E ++ GI+R S S FSSP +LVKK DG WRFCVDYRALN +T+ D FPIP+I
Sbjct: 459 DELELQCAAIIEQGIVRRSDSAFSSPVLLVKKPDGSWRFCVDYRALNALTVKDAFPIPVI 518
Query: 695 DELLDEIGTAEIFSKLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTF 754
DELLDE+ A F+KLDL+SGYHQ+RMR D+ KTAF TH+G YE+LV+PFGL NAP TF
Sbjct: 519 DELLDELHGARFFTKLDLRSGYHQVRMRPADVHKTAFHTHDGLYEFLVMPFGLCNAPVTF 578
Query: 755 QALMNQVLRPYLRKFVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQ 814
QALMN VLRP+LR+FVLVFF DILIYS H H+R VL L+ + L + KC+F
Sbjct: 579 QALMNDVLRPFLRRFVLVFFDDILIYSKTWADHLRHIRAVLSELQRHQLFLKRAKCAFAS 638
Query: 815 SELIYLGHVISKEGVAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQP 874
+ + YLGHVIS+ GVA DP+K++ + +WP P+ + +R FLGL GYYR+FV NY +A P
Sbjct: 639 ASVAYLGHVISEAGVAMDPAKVQAVRDWPAPRSARAVRSFLGLAGYYRKFVHNYGAIAAP 698
Query: 875 LNQLLKKNNFSWSAGATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQG 934
L LLKK++FSWS A AFD LK +TT PVLA+PDF K F++E DAS G GAVL+Q
Sbjct: 699 LTALLKKDSFSWSGEAATAFDALKAAVTTAPVLAMPDFSKPFIVECDASSHGFGAVLVQD 758
Query: 935 GRPVAYMSKTLSERAQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQR 994
PVA+ S+ ++ R +A + YEREL+ V AV+ WR YL G +F+V TD SL++L +QR
Sbjct: 759 SHPVAFFSRPVAPRHRALAAYERELIGFVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQR 818
Query: 995 LMGEEQQKWVSKLMGFDFEIKYKPGIENKAADALSRK-----LQFSAISSVQCEDWEDLE 1049
L Q WV KL+GFDF ++YKPG N ADALSR+ A+S+ + D+ D
Sbjct: 819 LATIPQHHWVGKLLGFDFTVEYKPGHANAVADALSRRDTPEDGTILALSAPRF-DFVDRL 877
Query: 1050 TEILADDKYQKIIQEITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAV 1109
D + E T G + G + Y R+ +P S +P ++ H+
Sbjct: 878 RHAQTTDPALVAMHEELTSGSQALPWAAVDGMIQYSGRLYIPPASPLLPELMAAVHEE-- 935
Query: 1110 GGHAGIFRTYKRISALFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVW 1169
GH G+ RT R+ F + MK +Q V+ C CQR K E L+PAG L PLP+P VW
Sbjct: 936 -GHEGVQRTLHRLRRDFHFPNMKQLVQDLVRACPTCQRYKSEHLHPAGLLLPLPVPQGVW 994
Query: 1170 SDISMDFIGGLPKTMGKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFP 1229
+DI++DF+ LP+ GK IL VVDRF+KY HF+ LSHPY+A+ VA+ F +IV+LHG P
Sbjct: 995 TDIALDFVEALPRVRGKSVILTVVDRFSKYCHFIPLSHPYSAETVAQAFFADIVRLHGMP 1054
Query: 1230 TSIVSDRDRVFLSSFWSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKP 1289
SIVSDRD VF S FW EL L GTKL ++A+HPQ+DGQ+E NR + YLRC+TG +P
Sbjct: 1055 QSIVSDRDTVFTSHFWRELMWLVGTKLHMTTAFHPQSDGQSESANRVIVMYLRCLTGDRP 1114
Query: 1290 KQWPKWLSWAEFWYNTNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNL 1349
+QW +WL WAE+ +NT Y ++++ TPF+ +YGR+PP I V V K ER+
Sbjct: 1115 RQWLQWLPWAEYVFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKTMEERDK 1174
Query: 1350 FLDTLKENLEKAQNRMKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFY 1409
FL ++ LE+AQ K+ +K R + +VGD L+++ SL + KL PRFY
Sbjct: 1175 FLADIRSRLEQAQATQKRHYDKAHRHVTYQVGDWALLRLRQRAASSLPQTVAGKLRPRFY 1234
Query: 1410 GPYPVIEKINAVAYKLQLPEGSQVHPVFHVSLLKKAPNEGVNSQPLPVYMTEEWELKVEP 1469
GPY + E IN VA +L LP +++H VFH+ LLKK ++ P P+ + EP
Sbjct: 1235 GPYRITELINDVAVRLALPPRARLHDVFHIGLLKKFHGSPPDAPP-PLPAVHHGAVVPEP 1293
Query: 1470 ESIIDSRAGDKGTVEVLVKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRDDTDP 1529
E + +R +G ++L++WK +WED + ++P+ L D++ L G D
Sbjct: 1294 ERAVKTRLA-RGVRQLLIQWKGESPASATWEDADAFIAKYPDFQLGDELALDEGGD---- 1348
Query: 1530 LVRPRFGKVYTRK 1542
+G+ Y R+
Sbjct: 1349 ---VMWGRTYARR 1358
Score = 66.2 bits (160), Expect = 8e-09
Identities = 45/153 (29%), Positives = 71/153 (45%), Gaps = 7/153 (4%)
Query: 104 VDIPMFNGN-DAYGWITKVERFFRLSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRA 162
+D P ++G D ++ + E +F R+ E EKV M +ED A W+ +E
Sbjct: 1 MDFPRYDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPR 60
Query: 163 WEPFKQALIRRFQPELVQNPFGPLLSAKQKGSVMEYREHFELL---AAPMRNADREVLKG 219
W FK L RF P L P L ++ G+V EY+ F+ L A P++ A L
Sbjct: 61 WNRFKDLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQ---LVQ 117
Query: 220 VFLNGLHEEIKAEMKLYPSEDLADLMDRALLLE 252
+F GL + ++++ + LA M A +E
Sbjct: 118 LFTGGLLPPLSHAVRIHNPQSLAAAMSLARQVE 150
>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18958673|gb|AAL82656.1| retrotransposon protein,
putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 1338
Score = 871 bits (2251), Expect = 0.0
Identities = 448/942 (47%), Positives = 614/942 (64%), Gaps = 12/942 (1%)
Query: 589 LLTEFPEVFQEPKELPPKRATDHAILLQEGAPIPNIRPYRYPFYQKNEIEKLVKEMLAAG 648
LL EF +VF EP LPP R H I L G +RPYRYP K+E+E+ + M G
Sbjct: 375 LLEEFADVFTEPTGLPPARDRSHRIQLLPGTAPVAVRPYRYPVRHKDELERQCRVMEENG 434
Query: 649 IIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKVTIPDKFPIPIIDELLDEIGTAEIFS 708
+I STS FSSP +LVKK DG WRFCV+YRALN+ T+ DK+PIP++DELLDE+ A IFS
Sbjct: 435 LIHRSTSAFSSPVLLVKKADGSWRFCVNYRALNERTVKDKYPIPVVDELLDELHGAAIFS 494
Query: 709 KLDLKSGYHQIRMREEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRK 768
KLDL+SGYHQ+RM +DI KTAFRTH+G YE+LV+PFGLTNA +TFQ+LMN VLRP+LR+
Sbjct: 495 KLDLRSGYHQVRMHPDDIDKTAFRTHDGLYEFLVIPFGLTNALATFQSLMNDVLRPFLRR 554
Query: 769 FVLVFFYDILIYSNNVDLHKEHLREVLQVLRDNHLVANQKKCSFGQSELIYLGHVISKEG 828
FVLVFF DIL+YS H +HLR V L L KCSFG + YLGH+IS+ G
Sbjct: 555 FVLVFFDDILVYSPTWTSHLQHLRTVFTALWAAQLFVKHTKCSFGDPSVAYLGHIISQHG 614
Query: 829 VAADPSKIKDMLNWPLPKDVKGLRGFLGLTGYYRRFVRNYSKLAQPLNQLLKKNNFSWSA 888
A D +KI+ + WP P+ K LRGFLGL YYR+F++++ +A PL QLL+K++F+W+
Sbjct: 615 FAMDAAKIQAVAEWPRPRSPKELRGFLGLASYYRKFIQDFGSVAAPLTQLLRKDSFAWAP 674
Query: 889 GATQAFDKLKEIMTTVPVLAVPDFQKTFVLETDASGKGLGAVLMQGGRPVAYMSKTLSER 948
AF +LK +TT PVL++PDF + FV+E DASG G GAVL QG P+AY S+ ++ R
Sbjct: 675 ATDDAFQRLKLALTTTPVLSLPDFNRPFVVECDASGTGFGAVLHQGEDPIAYFSRPIATR 734
Query: 949 AQAKSVYERELMAVVLAVQKWRHYLLGCKFIVHTDQKSLRFLAEQRLMGEEQQKWVSKLM 1008
A + YEREL+++V AV+ WR YL G +FIV TD SL+FL +QRL Q WVSKL+
Sbjct: 735 HHALAAYERELISLVQAVRHWRPYLWGRQFIVKTDHYSLKFLLDQRLSTIPQHHWVSKLL 794
Query: 1009 GFDFEIKYKPGIENKAADALSRKL----QFSAISSVQCEDWEDLETEILADDKYQKIIQE 1064
GFDF ++YKPG +N AADALS + Q +S+ + +D+ T D Q + E
Sbjct: 795 GFDFVVEYKPGKQNAAADALSCRAAPDSQAFVLSTPTFDLLKDIRTAGDTDPALQALRDE 854
Query: 1065 ITTQGPVPAGYHMRRGRLLYKNRIVLPKTSGKIPIILQEFHDSAVGGHAGIFRTYKRISA 1124
I + G + + G + YK RI +P S + +++ HD GH GI +T R+
Sbjct: 855 INS-GTRTTPWAVIDGLVTYKRRIYIPPGSPWVSVVVAAAHDD---GHEGIQKTLHRLRR 910
Query: 1125 LFFWEGMKLDIQTYVQKCEICQRNKYETLNPAGYLQPLPIPSQVWSDISMDFIGGLPKTM 1184
F + + ++Q C CQRNK + L+PAG L PLP+PS +WSD++MDF+ GLP+
Sbjct: 911 DFHTPDDRRVVHDHIQGCLTCQRNKTDHLHPAGLLLPLPVPSAIWSDVAMDFVEGLPRVG 970
Query: 1185 GKDTILVVVDRFTKYAHFLALSHPYNAKEVAELFIKEIVKLHGFPTSIVSDRDRVFLSSF 1244
GK IL VVDRF+KYAH +AL+H Y A+ VA F +IV+LHG P SIVSDRD VF S+F
Sbjct: 971 GKSVILTVVDRFSKYAHLIALAHSYTAETVARAFFVDIVRLHGVPESIVSDRDPVFTSAF 1030
Query: 1245 WSELFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGAKPKQWPKWLSWAEFWYN 1304
W+ LF TKL S+A+HPQ+DGQ++ VN+ + LRC+TG + +QW +WL WAE+ YN
Sbjct: 1031 WTALFTATCTKLHRSTAFHPQSDGQSKAVNKAIAMCLRCMTGDRSRQWLRWLPWAEYIYN 1090
Query: 1305 TNYHSAIKTTPFQALYGREPPVIIKGTDSLASVNEVEKMTAERNLFLDTLKENLEKAQNR 1364
T++H+A++ TPF+ +YGR+PP I S V V + ER+ FL ++ LE+AQ
Sbjct: 1091 TSFHAALRDTPFKLVYGRDPPSIRAYDASELRVAAVAQSIEERDAFLADVRLRLEQAQQY 1150
Query: 1365 MKQQANKHRRDIQLKVGDMVYLKIQPYKLKSLARRKNQKLSPRFYGPYPVIEKINAVAYK 1424
K+ ++ R++ +VG V+L+++ SL KL PRFYGPY V+ IN VAY+
Sbjct: 1151 AKRYYDQKHREVSFEVGAWVWLRVRHRVPASLPEAVKGKLRPRFYGPYRVVAVINEVAYR 1210
Query: 1425 LQLPEGSQVHPVFHVSLLKKAPNEGVN-SQPLPVYMTEEWELKVEPESIIDSRAGDKGTV 1483
L LP G+++H VFHV LLK P GV+ S PL + + + P ++ +R +G
Sbjct: 1211 LALPPGTRLHDVFHVGLLK--PFVGVSPSAPLALPPIQHGAAQPVPRQVLRARLA-RGVR 1267
Query: 1484 EVLVKWKNMPEFENSWEDYTELLEQFPEHHLEDKVILQGGRD 1525
++LV+W+ +P SWED + ++P L D+++++GGRD
Sbjct: 1268 QLLVQWEGLPASATSWEDLDDFRNRYPSFQLADELLIEGGRD 1309
Score = 55.8 bits (133), Expect = 1e-05
Identities = 48/196 (24%), Positives = 77/196 (38%), Gaps = 2/196 (1%)
Query: 8 MESRVDNLERSITEMKEEAHEQFEELRRLFMSRERRRTRGRSNTPRHRRVSRDHNSVSLA 67
M R++ L IT++ ++ Q + RL +R + R ++
Sbjct: 16 MMRRLEELSGLITDIDQQQRTQTLAINRLENGARAPSSRFDDLSDVGDRNGGRFAHHNVG 75
Query: 68 RSDDGSRTGSRAVTRSREPHEHIHHRSHLRAVTGRRVDIPMFNGN-DAYGWITKVERFFR 126
R D R G R P H R ++D P F+G D ++ + E+FFR
Sbjct: 76 RGDRYGRGGDGFHGHGR-PGGHRFDGDGDRPPRYHKLDFPKFDGRGDPLPFLNRCEQFFR 134
Query: 127 LSRVEETEKVEMVMIAMEDRALSWFQWWEEQAPVRAWEPFKQALIRRFQPELVQNPFGPL 186
R E KV + + D A W+ E +W F + L R+ P L P G L
Sbjct: 135 GQRTPEDNKVWLASYHLLDGAQQWYTRLERDHEPPSWHRFSELLNMRYGPPLHSTPLGEL 194
Query: 187 LSAKQKGSVMEYREHF 202
+ ++ +V +Y E F
Sbjct: 195 AACRRTTTVDDYAERF 210
Score = 42.4 bits (98), Expect = 0.13
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 380 GEDEEEEEEVFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGEREILILVDCG 439
GED+ + + ++A+ L++SL++ G+ ++ + + +G+ ++ L+D G
Sbjct: 227 GEDDTDNDSATDQAD------AAATLRISLHAATGVRASDAMHITAHLGDTDLYTLIDSG 280
Query: 440 ATSNFISQELVAELEIPVVATSEYVVEVGNGARERNSGVCKNLKLEVQG 488
F+SQ+ A + V V NG + GV ++ L++ G
Sbjct: 281 LMHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAG 329
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,730,711,336
Number of Sequences: 2540612
Number of extensions: 124045442
Number of successful extensions: 492280
Number of sequences better than 10.0: 36431
Number of HSP's better than 10.0 without gapping: 3489
Number of HSP's successfully gapped in prelim test: 32963
Number of HSP's that attempted gapping in prelim test: 417036
Number of HSP's gapped (non-prelim): 41598
length of query: 1555
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1413
effective length of database: 502,593,490
effective search space: 710164601370
effective search space used: 710164601370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0045.8