BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.13
(342 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 199 8e-50
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 191 2e-47
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 184 3e-45
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 182 2e-44
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 182 2e-44
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 181 4e-44
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 166 9e-40
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 164 4e-39
ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thal... 152 2e-35
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 149 9e-35
ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana] 146 8e-34
pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana g... 142 1e-32
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali... 141 2e-32
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8... 137 4e-31
ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thal... 125 1e-27
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 121 3e-26
ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana] 121 3e-26
ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana] 115 2e-24
ref|NP_175165.1| expressed protein [Arabidopsis thaliana] 105 3e-21
gb|AAG28895.1| F12A21.24 [Arabidopsis thaliana] 102 2e-20
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 199 bits (507), Expect = 8e-50
Identities = 117/341 (34%), Positives = 167/341 (48%), Gaps = 12/341 (3%)
Query: 2 NPGLSWHHIWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHL 61
N G ++ IWK P +V F+W V N I N R R ++ +++C +CN ETI+H+
Sbjct: 898 NMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHV 957
Query: 62 LRDCACVRPLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIW 121
LRDC + P+W++L+P F + L WL + P+ G FG+ +W W
Sbjct: 958 LRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMD-----PVKGIWPTLFGMGIWWAW 1012
Query: 122 TSRSCFVFQGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQ--VGWSPPP 179
R C VF K+ L+ D + A+ R + V+ + W P
Sbjct: 1013 KWRCCDVFGE-----RKICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPS 1067
Query: 180 PAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLA 239
WVK TDG+ RG LAA GG R+ G WL GF N+G+ AELWG + + +A
Sbjct: 1068 DGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIA 1127
Query: 240 WDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSV 299
WD+G R+ ++ D + V ++ G HP ++ + + RDW + H REAN +
Sbjct: 1128 WDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRL 1187
Query: 300 ADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRA 340
AD LAN A L G+H D P V LLL DV G PRA
Sbjct: 1188 ADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPRA 1228
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 191 bits (486), Expect = 2e-47
Identities = 115/336 (34%), Positives = 164/336 (48%), Gaps = 10/336 (2%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
+W+ P + FLW V N + N R R MA +CPLC SE++IH+LRDC +
Sbjct: 347 VWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMM 406
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVF 129
+W ++VP + F + L W+ G L+ + F L +W W R +VF
Sbjct: 407 GIWMRVVPVMEQRRFFETSLLEWMYGNLKERSDSERRSWPTL-FALTVWWGWKWRCGYVF 465
Query: 130 --QGVPFDLHKVLTSGLRQ-QLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCN 186
D K L S + + + ++ + L R + W P WV N
Sbjct: 466 GEDSRCRDRVKFLKSAVAEVEAAHLAANGDAREDVLVER------MIAWRKPAEGWVTMN 519
Query: 187 TDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPR 246
TDG+ G A GGV RD +G WL GF N+G + AELWG++ + +AW+RG R
Sbjct: 520 TDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRR 579
Query: 247 LVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANM 306
+ +E DS++ V + G HP ++ + +DW + H REAN +AD LAN
Sbjct: 580 VRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANY 639
Query: 307 AHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
A L FG +LD P VS++LL DVMG S PR R
Sbjct: 640 AFTLPFGFLLLDSCPEHVSSILLEDVMGTSFPRHVR 675
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 184 bits (468), Expect = 3e-45
Identities = 110/335 (32%), Positives = 159/335 (46%), Gaps = 8/335 (2%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
+WK P +V FLW V N + R R ++ ++C +C E+++H+LRDC
Sbjct: 400 LWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQL 459
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRS-SLLAPIGGGVVPDFGLLLWNIWTSRSCFV 128
+W ++VP Q F + L WL L S I + F +++W W R +
Sbjct: 460 GIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTI--FAVIIWWGWKWRCGNI 517
Query: 129 FQGVPFDLHKV-LTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCNT 187
F +V ++ H N++ PR +GW P WVK NT
Sbjct: 518 FGENTKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVER----MIGWVSPCVGWVKVNT 573
Query: 188 DGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRL 247
DG+ RG LA+ GGV RD G W GF N+G + AELWG++ + AW++ VPR+
Sbjct: 574 DGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRV 633
Query: 248 VVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMA 307
+E DS V V + G HP ++ + +DW + VH REAN +AD LAN A
Sbjct: 634 ELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYA 693
Query: 308 HDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
L G H D P +S+LL D +G + PR R
Sbjct: 694 FSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRRVR 728
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 182 bits (461), Expect = 2e-44
Identities = 106/327 (32%), Positives = 162/327 (49%), Gaps = 8/327 (2%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
+W+ +V F+W V++ I + R R ++ +C +C ETI+H+LRDC +
Sbjct: 291 VWRVTTTERVRVFIWLVVHQVIMTDVERRRRHLSASGVCQVCKGGDETILHVLRDCPSIA 350
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVF 129
+W +LVP AF AS++ W+ L S + G F +++W W R VF
Sbjct: 351 GIWGRLVPRGKITAFFASNILDWVYQNL-SDVTEIRGCPWATLFAIVVWWAWKWRCGNVF 409
Query: 130 --QGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCNT 187
G D + + R+ ++ N+ + R S + + W+PP W K NT
Sbjct: 410 GENGRCRDRVRFVVDQAREI--WIAHLNLRRGAM---RGSEVEMSIKWTPPSTGWFKLNT 464
Query: 188 DGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRL 247
DG+ RG LA GGV RD G+W GF N+G + AELWG++ + +AW+RG+ RL
Sbjct: 465 DGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELWGVYYGLHIAWERGIRRL 524
Query: 248 VVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMA 307
+E DS++ V + G + HP ++ + RDW + H REAN +AD LAN A
Sbjct: 525 ELEVDSTLVVGFLQAGIEDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYA 584
Query: 308 HDLDFGIHILDYPPPRVSNLLLFDVMG 334
L G H P V+++ L D G
Sbjct: 585 FSLPLGFHACGSMPAPVASIALEDAAG 611
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 182 bits (461), Expect = 2e-44
Identities = 116/345 (33%), Positives = 157/345 (44%), Gaps = 28/345 (8%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
IW+ P +V FLW V N I N R R M +C +C ETIIH+LRDC +
Sbjct: 67 IWRVLAPERVRVFLWLVGNQAILTNVERARRHMGDTDVCQVCRGAKETIIHVLRDCPAMS 126
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVF 129
+W +LVP + F L WL L P GG F + +W W R VF
Sbjct: 127 GIWLRLVPARERERFFTRSLLEWLYENLHQK-EDPSRGGWPTLFAMSIWWGWKWRCMNVF 185
Query: 130 QGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVG------------WSP 177
LR D V +++ A A+Y V G W
Sbjct: 186 ------------GELRPCRDRV---RFVRDMAAEVGAAYLKVNAGRNLGERVERQIVWKK 230
Query: 178 PPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQ 237
P W NTDG+ G A GV RD G WL GF N+G + AELWG++ +
Sbjct: 231 PSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELWGVYYGLV 290
Query: 238 LAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREAN 297
AW+RGV R+V+E +S + V + G HP ++ + + RDW + H REAN
Sbjct: 291 TAWERGVRRVVLEVESKLVVGFLQSGIRDTHPLAFLVRLCQGFIARDWLVRVTHVYREAN 350
Query: 298 SVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
+AD LAN A L G+ +LD P V+++++ D +G S PR R
Sbjct: 351 RLADGLANYAFTLPIGLQLLDDCPASVNSIMVEDSVGTSFPRNIR 395
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 181 bits (458), Expect = 4e-44
Identities = 108/332 (32%), Positives = 158/332 (47%), Gaps = 25/332 (7%)
Query: 16 PFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRPLWQQL 75
P +V FLW V+ I N R+R ++ +C +C ETI+H+LRDC + +W +L
Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62
Query: 76 VPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVFQGVPFD 135
VP + F + L W+ LR G F + +W W R +F G
Sbjct: 63 VPRDQIRQFFTASLLEWIYKNLRER------GSWPTVFVMAVWWGWKWRCGNIFGG---- 112
Query: 136 LHKVLTSGLRQQLDYVHCRNMMQNPALPR--------RASYHTVQVGWSPPPPAWVKCNT 187
R ++ ++ +++ + A+ R S V W P WVK NT
Sbjct: 113 -----NGKCRDRVKFI--KDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNT 165
Query: 188 DGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRL 247
DG+ RG A GGV RD G W+ GF N+G + AELWG++ + +AW RG R+
Sbjct: 166 DGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRV 225
Query: 248 VVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMA 307
+E DS + V + G HP ++ + + W + H REAN +AD LAN A
Sbjct: 226 ELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYA 285
Query: 308 HDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
L G+H+L+ P VS++LL DV G S PR
Sbjct: 286 FSLSLGLHLLESRPDVVSSILLDDVAGVSYPR 317
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 166 bits (420), Expect = 9e-40
Identities = 105/332 (31%), Positives = 155/332 (46%), Gaps = 12/332 (3%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
IWK P +V F+W V + I N R R ++ + C +CN E+I+H+LRDC +
Sbjct: 647 IWKLVAPERVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMT 706
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVF 129
P+WQ+L+P F + WL L P G F + +W W R VF
Sbjct: 707 PIWQRLLPQRRQNEFFSQ--FEWLFTNLD-----PAKGDWPTLFSMGIWWAWKWRCGDVF 759
Query: 130 QGVPFDLHKV-LTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCNTD 188
++ + +++ H + + +RA + + W P WVK TD
Sbjct: 760 GERKLCRDRLKFIKDIAEEVRKAHVGTLNNHV---KRARVERM-IRWKAPSDRWVKLTTD 815
Query: 189 GSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRLV 248
G+ RG LAA G + G WL GF N+G+ + AELWG + + +AWD+G R+
Sbjct: 816 GASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVE 875
Query: 249 VESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAH 308
+ DS + V ++ G HP ++ + + RDW + H REAN +AD LAN A
Sbjct: 876 LNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAF 935
Query: 309 DLDFGIHILDYPPPRVSNLLLFDVMGGSLPRA 340
L G H + P V L+ D G S PRA
Sbjct: 936 FLPLGFHCFEICPEDVLLFLVEDANGTSFPRA 967
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 164 bits (415), Expect = 4e-39
Identities = 103/317 (32%), Positives = 146/317 (45%), Gaps = 13/317 (4%)
Query: 31 IWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVRPLWQQLVPGHLFQAFIASDLC 90
+ N R R ++ +C +C +TIIH+LRDC + +W +LVP + F L
Sbjct: 5 LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLL 64
Query: 91 PWL---LGQLRSSLLAPIGGGVVPDFGLLLWNIWTSR--SCFVFQGVPFDLHKVLTSGLR 145
WL LG R + + F L +W W R + F Q D + L L
Sbjct: 65 EWLFANLGDRRKTCESTWS----TLFALSIWWAWKWRCGNIFGVQDKCRDRVRFL-KDLA 119
Query: 146 QQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCR 205
++ H + R + WS P W K NTDG+ RG LA+ GGV R
Sbjct: 120 RETSMAHVIVRTLSGGHGERVER---LIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLR 176
Query: 206 DSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSD 265
D G W GF N+G + AELWG++ + +AW+R V RL +E DS + V + G +
Sbjct: 177 DEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGIN 236
Query: 266 VLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAHDLDFGIHILDYPPPRVS 325
+HP ++ + RDW + H REAN +AD LAN A L G H L P +
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLR 296
Query: 326 NLLLFDVMGGSLPRATR 342
+LL D G ++ R R
Sbjct: 297 FILLDDTSGATVSRQVR 313
>ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 411
Score = 152 bits (383), Expect = 2e-35
Identities = 99/337 (29%), Positives = 144/337 (42%), Gaps = 7/337 (2%)
Query: 4 GLSWHHIWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLR 63
G + +W+ P +V F W + N I N R R + LC +C E+ +H+LR
Sbjct: 77 GALFGRVWRIKVPERVRVFFWLLGNQAIMTNEERHRRHLCASDLCEVCKGGVESAMHILR 136
Query: 64 DCACVRPLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTS 123
DC + +W ++VP F L W+ G L + G F + +W W
Sbjct: 137 DCPTMEGIWLRIVPPRKRHEFFKKSLFEWVYGNLGDDAVVD-GVPWSVMFAMGVWWGWKW 195
Query: 124 RSCFVFQGVPFDLHKV-LTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAW 182
R VF +V + +++ H + R +GW P W
Sbjct: 196 RCGNVFGENRKCRDRVQFVKNVAKEVFQAHGSRAGNDRGRNRVERL----IGWGSPGVGW 251
Query: 183 VKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDR 242
VK NTDG+ RG LA GGV RD G W GF N+G + AELW ++ + AW
Sbjct: 252 VKLNTDGASRGNPGLATAGGVLRDEEGNWRGGFAANIGRCSAPLAELWEVYYGLYFAWAI 311
Query: 243 GVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADE 302
+P+L +E DS + V + G HP ++ + +DW Q H REAN + +
Sbjct: 312 RIPQLELEVDSEIVVGFLKTGISDTHPLFFLVRLCYGFLSKDWRVQITHVYREANHL-NG 370
Query: 303 LANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
LAN A L +H D +S+ L D G PR
Sbjct: 371 LANYAFSLPSDLHFYDLCRDGLSSCLSDDARGAVYPR 407
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 149 bits (377), Expect = 9e-35
Identities = 96/296 (32%), Positives = 137/296 (45%), Gaps = 22/296 (7%)
Query: 56 ETIIHLLRDCACVRPLWQQLVPGHLFQAFIASDLCPWLLGQL--RSSLLAPIGGGVVPDF 113
E+++H+ RDC +W + VP Q F + L WL L RSS I + F
Sbjct: 25 ESVLHVFRDCPAQLGIWVRFVPRRRQQGFFSKSLFEWLYDNLCDRSSC-EDIPWSTI--F 81
Query: 114 GLLLWNIWTSRSCFVF-------QGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRA 166
+++W W R +F V F V+ ++ H N + PR
Sbjct: 82 AVIIWWGWKWRCSNIFGENTKCRDRVKFVKEWVV------EVYRAHLGNALVGSTQPRVE 135
Query: 167 SYHTVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLW 226
+GW P WVK NTDG+ RG LA+ GGV RD G W GF N+G +
Sbjct: 136 RL----IGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQH 191
Query: 227 AELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWD 286
AELWG++ + AW++ VPR+ +E DS V + G HP ++ + +DW
Sbjct: 192 AELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDWL 251
Query: 287 FQCVHACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
+ V+ REAN +AD LAN L G H D+ P +S+LL D +G + R R
Sbjct: 252 VRIVYVYREANCLADGLANYTILLSLGFHSFDFVPDAMSSLLKEDTLGSTQLRRVR 307
>ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]
Length = 175
Score = 146 bits (369), Expect = 8e-34
Identities = 72/171 (42%), Positives = 94/171 (54%)
Query: 172 QVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWG 231
QV WS P W K NTDG+ G LA GG R+ YG W FGF N+G + AELWG
Sbjct: 4 QVRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELWG 63
Query: 232 IFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVH 291
++ + +AWDRG+ RL +E DS + V + G HP ++ + RDW + H
Sbjct: 64 VYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGH 123
Query: 292 ACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
REAN +ADELAN A DL G H PP + ++L D +G S+PR R
Sbjct: 124 VYREANRLADELANYAFDLPLGYHGFASPPSSLDSILRDDELGTSVPRLVR 174
>pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana
gi|6630448|gb|AAF19536.1| F23N19.5 [Arabidopsis
thaliana]
Length = 233
Score = 142 bits (359), Expect = 1e-32
Identities = 71/171 (41%), Positives = 92/171 (53%)
Query: 172 QVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWG 231
QV WS P W K NTDG+ G LA GG R+ YG W FGF N+G AELWG
Sbjct: 62 QVRWSKPSLGWCKLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWG 121
Query: 232 IFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVH 291
++ + +AWDRG+ RL +E DS + V + G HP ++ + RDW + H
Sbjct: 122 VYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGH 181
Query: 292 ACREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
REAN +AD LAN A DL G H PP + ++L D +G S+PR R
Sbjct: 182 VYREANRLADGLANYAFDLPLGYHAFASPPNSLDSILRDDELGISVPRLVR 232
>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
gi|18394475|ref|NP_564020.1| hypothetical protein
[Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 141 bits (356), Expect = 2e-32
Identities = 89/277 (32%), Positives = 126/277 (45%), Gaps = 20/277 (7%)
Query: 71 LWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVFQ 130
+W +L+P +F + L W+ L + G F +W W R
Sbjct: 4 IWTRLLPVRRLSSFFSKSLLEWIYANLGEEIEIN-GCPWAVTFSQAIWWGWKWR-----Y 57
Query: 131 GVPFDLHKVLTSGLR----QQLD----YVHCRNMMQNPALPRRASYHTVQVGWSPPPPAW 182
G F +K +R + LD +VH + A R + WSPP W
Sbjct: 58 GNIFGENKKCRDRVRFIKDRALDVWKAHVHKMGVTTRTAREERL------IAWSPPRVGW 111
Query: 183 VKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDR 242
K NTDG+ RG LA GGV RD G W +GF N+G + AELWG + + +AW+R
Sbjct: 112 FKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWER 171
Query: 243 GVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADE 302
GV +L +E DS + V + G D HP ++ +DW + H REAN +AD
Sbjct: 172 GVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADG 231
Query: 303 LANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
LAN A L G H+ + P V +++ DV G + PR
Sbjct: 232 LANYAFFLPLGFHLFNSTPDIVMSIVHDDVAGSAYPR 268
>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
F1L3.4 [imported] - Arabidopsis thaliana
Length = 253
Score = 137 bits (346), Expect = 4e-31
Identities = 67/167 (40%), Positives = 91/167 (54%)
Query: 173 VGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGI 232
+ WSPP W K NTDG+ RG LA GGV RD G W +GF N+G + AELWG
Sbjct: 83 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 142
Query: 233 FSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHA 292
+ + +AW+RGV +L +E DS + V + G D HP ++ +DW + H
Sbjct: 143 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHV 202
Query: 293 CREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
REAN +AD LAN A L G H+ + P V +++ DV G + PR
Sbjct: 203 YREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVAGSAYPR 249
>ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 594
Score = 125 bits (315), Expect = 1e-27
Identities = 80/252 (31%), Positives = 115/252 (44%), Gaps = 19/252 (7%)
Query: 10 IWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHLLRDCACVR 69
+W+ P + FLW V N + N R R MA +CPLC SE++IH+LRDC +
Sbjct: 334 VWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMM 393
Query: 70 PLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVF 129
+W ++VP + F + L W+ G L+ + F L +W W R +VF
Sbjct: 394 GIWMRVVPVMEQRRFFETSLLEWMYGNLKERSDSERRSWPTL-FALTVWWGWKWRCGYVF 452
Query: 130 --QGVPFDLHKVLTSGLRQ-QLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCN 186
D K L S + + + ++ + L R + W P WV N
Sbjct: 453 GEDSRCRDRVKFLKSAVAEVEAAHLAANGDAREDVLVER------MIAWRKPAEGWVTMN 506
Query: 187 TDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDR---- 242
TDG+ G A GGV RD +G WL GF N+G + AELWG++ + +AW+R
Sbjct: 507 TDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERVRDW 566
Query: 243 -----GVPRLVV 249
GVP VV
Sbjct: 567 GLSSAGVPGAVV 578
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 121 bits (304), Expect = 3e-26
Identities = 80/268 (29%), Positives = 117/268 (42%), Gaps = 22/268 (8%)
Query: 2 NPGLSWHHIWKWDGPFKVANFLWRVLNNGIWVNYRRWRAGMALDSLCPLCNEESETIIHL 61
N + +W+ +V FLW + + S+C +C ETI+H+
Sbjct: 688 NMAAFFDRLWRVVALERVKTFLWHIGDT----------------SVCQVCKGGDETILHV 731
Query: 62 LRDCACVRPLWQQLVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIW 121
L+DC + +W++LV F L WL L A G F +++W W
Sbjct: 732 LKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVNLGMKN-AETGYAWATLFAIVVWWSW 790
Query: 122 TSRSCFVFQGVPFDLHKV-LTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPP 180
R +VF V +V L ++ + H + QN L R V W PP
Sbjct: 791 KWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIHS-QNGGLRTRVER---LVAWKPPDG 846
Query: 181 AWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAW 240
WVK NTDG+ RG LA GGV RD G W GF ++G + AELWG++ + +AW
Sbjct: 847 EWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAW 906
Query: 241 DRGVPRLVVESDSSVAVKLINEGSDVLH 268
+R R+ +E DS + V + G H
Sbjct: 907 ERRFTRVELEVDSELVVGFLTTGISDTH 934
>ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana]
Length = 214
Score = 121 bits (303), Expect = 3e-26
Identities = 66/170 (38%), Positives = 87/170 (50%)
Query: 173 VGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGI 232
+ WS W K NTDG+ RG LAA GGV R+S G W GF N+G + AELWG+
Sbjct: 44 ISWSRLSEGWCKLNTDGASRGNPGLAAAGGVLRESNGEWRRGFAINIGICSAPLAELWGV 103
Query: 233 FSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHA 292
+ + +AW+ V +L +E DS V V + G HP ++ + RDW + H
Sbjct: 104 YYGLFMAWECKVSQLELEVDSEVVVGFLRTGISESHPLSFLVRMCYGFISRDWIVRISHK 163
Query: 293 CREANSVADELANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
REAN +AD LAN A L G P V +++L D G S PR R
Sbjct: 164 YREANRLADGLANYAFSLPLGFQFFYVCPDAVYSVMLEDRNGMSFPRHVR 213
>ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 115 bits (288), Expect = 2e-24
Identities = 74/239 (30%), Positives = 107/239 (43%), Gaps = 22/239 (9%)
Query: 56 ETIIHLLRDCACVRPLWQQLVPGHLFQAFIASDLCPWLLGQL--RSSLLAPIGGGVVPDF 113
E+++H+ RDC +W + VP Q F + L WL L RSS I + F
Sbjct: 25 ESVLHVFRDCPAQLGIWVRFVPRRRQQGFFSKSLFEWLYDNLCDRSSC-EDIPWSTI--F 81
Query: 114 GLLLWNIWTSRSCFVF-------QGVPFDLHKVLTSGLRQQLDYVHCRNMMQNPALPRRA 166
+++W W R +F V F V+ ++ H N + PR
Sbjct: 82 AVIIWWGWKWRCSNIFGENTKCRDRVKFVKEWVV------EVYRAHLGNALVGSTQPRVE 135
Query: 167 SYHTVQVGWSPPPPAWVKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLW 226
+GW P WVK NTDG+ RG LA+ GGV RD G W GF N+G +
Sbjct: 136 RL----IGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQH 191
Query: 227 AELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDW 285
AELWG++ + AW++ VPR+ +E DS V + G HP ++ + +DW
Sbjct: 192 AELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDW 250
>ref|NP_175165.1| expressed protein [Arabidopsis thaliana]
Length = 259
Score = 105 bits (261), Expect = 3e-21
Identities = 58/157 (36%), Positives = 79/157 (49%), Gaps = 3/157 (1%)
Query: 183 VKCNTDGSVRGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDR 242
+K NTDG+ RG LA GGV +D+ GRW GF N+G S+ AELWG + + LAW+R
Sbjct: 101 LKINTDGASRGNPGLATAGGVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLAWER 160
Query: 243 GVPRLVVESDSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADE 302
+ +E DS + V + G HP ++ + +DW + H REAN AD
Sbjct: 161 KSSHIELEVDSEIVVGFLKTGISDHHPLSFLVRLCHGFISKDWRVRIFHVYREANRFADG 220
Query: 303 LANMAHDLDFGIHILDYPPPRVSNLLLFDVMGGSLPR 339
LAN L G H + P V D +G + PR
Sbjct: 221 LANYVFSLPLGFH---FVPNVVDLFWKEDNLGVTCPR 254
>gb|AAG28895.1| F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 102 bits (254), Expect = 2e-20
Identities = 55/151 (36%), Positives = 74/151 (48%)
Query: 192 RGTSNLAACGGVCRDSYGRWLFGFCRNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVES 251
RG LA GGV RD G W GF N+G + AELWG++ LAW + + R+ +E
Sbjct: 652 RGNPGLATAGGVIRDGAGNWCGGFALNIGRCSAPLAELWGVYYGFYLAWTKALTRVELEV 711
Query: 252 DSSVAVKLINEGSDVLHPYGGMISQIRQWKDRDWDFQCVHACREANSVADELANMAHDLD 311
DS + V + G HP ++ +DW + H REAN +AD LAN A L
Sbjct: 712 DSELVVGFLKTGIGDQHPLSFLVRLCHGLLSKDWIVRITHVYREANRLADGLANYAFSLP 771
Query: 312 FGIHILDYPPPRVSNLLLFDVMGGSLPRATR 342
G H L P + +L D +G + PR R
Sbjct: 772 LGFHSLIDVPDDLEVILHEDSLGSTRPRRVR 802
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.141 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 684,121,213
Number of Sequences: 2540612
Number of extensions: 28932836
Number of successful extensions: 82776
Number of sequences better than 10.0: 301
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 82401
Number of HSP's gapped (non-prelim): 366
length of query: 342
length of database: 863,360,394
effective HSP length: 129
effective length of query: 213
effective length of database: 535,621,446
effective search space: 114087367998
effective search space used: 114087367998
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0045.13