BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0044b.1
(221 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA68583.1| hypothetical protein FG00547.1 [Gibberella zeae P... 37 0.40
gb|AAP07846.1| Oligopeptide-binding protein oppA [Bacillus cereu... 34 3.4
ref|XP_499228.1| PREDICTED: hypothetical protein XP_499228 [Homo... 34 3.4
ref|YP_082347.1| oligopeptide ABC transporter, solute-binding pr... 34 3.4
ref|XP_647595.1| hypothetical protein DDB0216586 [Dictyostelium ... 33 4.4
gb|AAN63396.1| Coenzyme q (ubiquinone) biosynthesis protein 2, i... 33 5.8
gb|AAN63395.1| Coenzyme q (ubiquinone) biosynthesis protein 2, i... 33 5.8
gb|AAN63394.1| Coenzyme q (ubiquinone) biosynthesis protein 2, i... 33 5.8
gb|AAW88396.1| Coenzyme q (ubiquinone) biosynthesis protein 2, i... 33 5.8
gb|AAW88395.1| Coenzyme q (ubiquinone) biosynthesis protein 2, i... 33 5.8
emb|CAE65708.1| Hypothetical protein CBG10785 [Caenorhabditis br... 33 5.8
ref|NP_522202.1| PROBABLE PEPTIDE SYNTHETASE PROTEIN [Ralstonia ... 33 7.6
ref|YP_035092.1| oligopeptide ABC transporter, solute-binding pr... 33 7.6
ref|NP_977255.1| ABC transporter, substrate-binding protein, put... 32 9.9
>gb|EAA68583.1| hypothetical protein FG00547.1 [Gibberella zeae PH-1]
gi|46107328|ref|XP_380723.1| hypothetical protein
FG00547.1 [Gibberella zeae PH-1]
Length = 848
Score = 37.0 bits (84), Expect = 0.40
Identities = 35/114 (30%), Positives = 47/114 (40%), Gaps = 10/114 (8%)
Query: 106 PPKILPETQVRYATRPIMLWFLSLFVDASV---SQLEGVCSENTHFKGARDT---HLKDM 159
PP+ T V YA I LSL S+ ++L G +E TH + H +
Sbjct: 643 PPEAFAATVVSYAGLHIPTLVLSLHSGLSIKLEAKLRGSDTEQTHMTDTNNPMIWHWLLV 702
Query: 160 PRTKNLNL---PPANRSSHGSRIPPRHRASPTHSQCVFVWHSEHEVQTATVTQF 210
T + L P R + GS IP R R T S+C WH E TV ++
Sbjct: 703 STTDVIGLETGPMEFRLARGSSIPSR-RTDKTRSRCCKDWHEAGETIVITVGKY 755
>gb|AAP07846.1| Oligopeptide-binding protein oppA [Bacillus cereus ATCC 14579]
gi|30019014|ref|NP_830645.1| Oligopeptide-binding
protein oppA [Bacillus cereus ATCC 14579]
Length = 579
Score = 33.9 bits (76), Expect = 3.4
Identities = 22/58 (37%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Query: 13 PKFAFLHGVSDAQLNIIPKELQISNRQYV-----LCFTCSEFNIFLCTRSSILKERSL 65
P FLH VS QL I+P++ I N Y+ SE NI L + KER+L
Sbjct: 246 PNLFFLHYVSSMQLAILPRDTSIQNHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERAL 303
>ref|XP_499228.1| PREDICTED: hypothetical protein XP_499228 [Homo sapiens]
Length = 1358
Score = 33.9 bits (76), Expect = 3.4
Identities = 30/113 (26%), Positives = 40/113 (34%), Gaps = 11/113 (9%)
Query: 92 SGVAATPIATFYCQPPKILPETQVRYATRPIMLWFLSLFVDASVSQLEGVCSENTHFKGA 151
SG P A+F +PPK + Q RY L V ++ G C+ A
Sbjct: 108 SGRTLLPEASFRPEPPKPITADQRRYK---------DLITGLKVKEVRGGCARR-GTNAA 157
Query: 152 RDTHLKDMPRTKNLNLPPANRSSHGSRIPPRHRASPTHSQCVFVWHSEHEVQT 204
H PR + + P R P RA+ H + H H VQT
Sbjct: 158 LGFHAPRFPRAERRSPPSTAGVGPDGRDPRVQRATVAHPTATYS-HERHAVQT 209
>ref|YP_082347.1| oligopeptide ABC transporter, solute-binding protein [Bacillus
cereus E33L] gi|51977952|gb|AAU19502.1| oligopeptide ABC
transporter, solute-binding protein [Bacillus cereus
E33L]
Length = 579
Score = 33.9 bits (76), Expect = 3.4
Identities = 22/58 (37%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Query: 13 PKFAFLHGVSDAQLNIIPKELQISNRQYV-----LCFTCSEFNIFLCTRSSILKERSL 65
P FLH VS QL I+P+ + I N Y+ SE NI L + KER+L
Sbjct: 246 PNLFFLHYVSSIQLAILPRNVSIENHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERAL 303
>ref|XP_647595.1| hypothetical protein DDB0216586 [Dictyostelium discoideum]
gi|60475807|gb|EAL73742.1| hypothetical protein
DDB0216586 [Dictyostelium discoideum]
Length = 1982
Score = 33.5 bits (75), Expect = 4.4
Identities = 16/36 (44%), Positives = 21/36 (57%)
Query: 155 HLKDMPRTKNLNLPPANRSSHGSRIPPRHRASPTHS 190
+L T LNLPP N+SS S +PP+H+ HS
Sbjct: 739 NLLSQSSTSFLNLPPLNQSSTNSFLPPQHQHHHHHS 774
>gb|AAN63396.1| Coenzyme q (ubiquinone) biosynthesis protein 2, isoform e
[Caenorhabditis elegans] gi|32565247|ref|NP_871684.1|
UbiA prenyltransferase family member (40.5 kD) (3I27)
[Caenorhabditis elegans]
Length = 370
Score = 33.1 bits (74), Expect = 5.8
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 53 LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
+ TRS + RS I+ I N ++ D + +T+T QP + T + PP
Sbjct: 1 MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60
Query: 108 KILPETQVRYATRPIMLWFL 127
+ P Q+ +PI W L
Sbjct: 61 NLKPYLQLMRVDKPIGTWLL 80
>gb|AAN63395.1| Coenzyme q (ubiquinone) biosynthesis protein 2, isoform d
[Caenorhabditis elegans] gi|32565245|ref|NP_871683.1|
UbiA prenyltransferase (3I27) [Caenorhabditis elegans]
Length = 201
Score = 33.1 bits (74), Expect = 5.8
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 53 LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
+ TRS + RS I+ I N ++ D + +T+T QP + T + PP
Sbjct: 1 MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60
Query: 108 KILPETQVRYATRPIMLWFL 127
+ P Q+ +PI W L
Sbjct: 61 NLKPYLQLMRVDKPIGTWLL 80
>gb|AAN63394.1| Coenzyme q (ubiquinone) biosynthesis protein 2, isoform c
[Caenorhabditis elegans] gi|32565243|ref|NP_871682.1|
UbiA prenyltransferase family member (3I27)
[Caenorhabditis elegans]
Length = 216
Score = 33.1 bits (74), Expect = 5.8
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 53 LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
+ TRS + RS I+ I N ++ D + +T+T QP + T + PP
Sbjct: 1 MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60
Query: 108 KILPETQVRYATRPIMLWFL 127
+ P Q+ +PI W L
Sbjct: 61 NLKPYLQLMRVDKPIGTWLL 80
>gb|AAW88396.1| Coenzyme q (ubiquinone) biosynthesis protein 2, isoform b
[Caenorhabditis elegans] gi|17553720|ref|NP_498512.1|
UbiA prenyltransferase family member (3I27)
[Caenorhabditis elegans]
Length = 427
Score = 33.1 bits (74), Expect = 5.8
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 53 LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
+ TRS + RS I+ I N ++ D + +T+T QP + T + PP
Sbjct: 1 MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60
Query: 108 KILPETQVRYATRPIMLWFL 127
+ P Q+ +PI W L
Sbjct: 61 NLKPYLQLMRVDKPIGTWLL 80
>gb|AAW88395.1| Coenzyme q (ubiquinone) biosynthesis protein 2, isoform a
[Caenorhabditis elegans] gi|17553718|ref|NP_498513.1|
UbiA prenyltransferase family member (3I27)
[Caenorhabditis elegans]
Length = 356
Score = 33.1 bits (74), Expect = 5.8
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 53 LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
+ TRS + RS I+ I N ++ D + +T+T QP + T + PP
Sbjct: 1 MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60
Query: 108 KILPETQVRYATRPIMLWFL 127
+ P Q+ +PI W L
Sbjct: 61 NLKPYLQLMRVDKPIGTWLL 80
>emb|CAE65708.1| Hypothetical protein CBG10785 [Caenorhabditis briggsae]
Length = 739
Score = 33.1 bits (74), Expect = 5.8
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 105 QPPKILPETQVRYATRPIMLWFLSLFVDAS------------VSQLEGVCSENTHFKGAR 152
QPP+++P Q R T P + +F ++A+ +QL+ S NT
Sbjct: 434 QPPRVMPSPQTRVQTFPFVPFFTPPSLNATDMSTQFNLANILSAQLKNDSSPNTDTSSVE 493
Query: 153 DTHLKDMPRTKNLNLPPANRSSHGSRI 179
+ ++D P K +L P+N S S +
Sbjct: 494 EKVIRDDP-PKMASLSPSNSSESSSSV 519
>ref|NP_522202.1| PROBABLE PEPTIDE SYNTHETASE PROTEIN [Ralstonia solanacearum GMI1000]
gi|17431111|emb|CAD17792.1| PROBABLE PEPTIDE SYNTHETASE
PROTEIN [Ralstonia solanacearum]
Length = 6889
Score = 32.7 bits (73), Expect = 7.6
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 87 ATPQPSGVAATP---IATFYCQPPKILPETQVRYATRPIMLWFLSLFVDASVSQLE---- 139
+T QP GVA T + Y Q + +Q R +L F S+ DA+VS++
Sbjct: 4362 STGQPKGVAVTHQGVASLVYSQCERFGVSSQSR------VLQFASISFDAAVSEIGMGLL 4415
Query: 140 -GVC----SENTHFKGARDTHLKDMPRTKNLNLPPA 170
G C GA THL D R ++ LPPA
Sbjct: 4416 CGACLVLAPAQALMPGAALTHLLDRERITHVTLPPA 4451
>ref|YP_035092.1| oligopeptide ABC transporter, solute-binding protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49331716|gb|AAT62362.1| oligopeptide ABC transporter,
solute-binding protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 579
Score = 32.7 bits (73), Expect = 7.6
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 13 PKFAFLHGVSDAQLNIIPKELQISNRQYVLC--FTCSEF---NIFLCTRSSILKERSL 65
P FLH VS QL I+P+++ I N Y+ F + + NI L + KER+L
Sbjct: 246 PNLFFLHYVSSIQLAILPRDVSIENHHYIGTGPFKLAHYSADNIVLEAFTHYFKERAL 303
>ref|NP_977255.1| ABC transporter, substrate-binding protein, putative [Bacillus
cereus ATCC 10987] gi|42735926|gb|AAS39863.1| ABC
transporter, substrate-binding protein, putative
[Bacillus cereus ATCC 10987]
Length = 579
Score = 32.3 bits (72), Expect = 9.9
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 13 PKFAFLHGVSDAQLNIIPKELQISNRQYV-----LCFTCSEFNIFLCTRSSILKERSL 65
P FLH VS QL I+P+++ I Y+ SE NI L + KER+L
Sbjct: 246 PNLFFLHYVSSIQLAILPRDVSIQTHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERAL 303
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,391,753
Number of Sequences: 2540612
Number of extensions: 15755297
Number of successful extensions: 36365
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 36362
Number of HSP's gapped (non-prelim): 15
length of query: 221
length of database: 863,360,394
effective HSP length: 123
effective length of query: 98
effective length of database: 550,865,118
effective search space: 53984781564
effective search space used: 53984781564
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0044b.1