BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.15
(352 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC69997.1| HMG I/Y like protein [Glycine max] 325 2e-87
emb|CAA15421.1| HMR1 protein [Antirrhinum majus] 167 4e-40
gb|AAP31950.1| At3g18035 [Arabidopsis thaliana] gi|27311657|gb|A... 140 6e-32
gb|AAG50847.1| hypothetical protein, 3' partial [Arabidopsis tha... 137 5e-31
ref|NP_175295.1| histone H1/H5 family protein [Arabidopsis thali... 137 5e-31
gb|AAF79708.1| T1N15.25 [Arabidopsis thaliana] gi|25405944|pir||... 136 1e-30
dbj|BAA11766.1| high mobility group protein [Canavalia gladiata]... 119 1e-25
ref|XP_482501.1| putative high mobility group I/Y (HMGI/Y protei... 116 1e-24
emb|CAB40848.2| HMGI/Y protein [Zea mays] 115 2e-24
gb|AAG00601.1| high mobility group I/Y-2 [Zea mays] 114 3e-24
emb|CAB40849.1| HMGI/Y protein [Zea mays] 114 4e-24
gb|AAT08736.1| high mobility group I/Y-2 [Hyacinthus orientalis] 113 7e-24
dbj|BAA11767.1| high mobility group protein [Canavalia gladiata]... 113 1e-23
pir||T02029 DNA-binding protein pabf - common tobacco gi|555655|... 112 1e-23
emb|CAA67752.1| HMG-I/Y [Pisum sativum] gi|899367|emb|CAA61747.1... 108 2e-22
gb|AAF22135.1| high mobility group protein I/Y [Brassica napus] 104 5e-21
dbj|BAD36308.1| DNA binding protein PF1 [Oryza sativa (japonica ... 102 2e-20
emb|CAA71797.1| HMG-I/Y [Arabidopsis thaliana] 102 2e-20
emb|CAA67564.1| HMG-I/Y protein [Arabidopsis thaliana] gi|284669... 101 4e-20
emb|CAA61276.1| AT1 [Oryza sativa (indica cultivar-group)] gi|13... 101 4e-20
>emb|CAC69997.1| HMG I/Y like protein [Glycine max]
Length = 413
Score = 325 bits (832), Expect = 2e-87
Identities = 216/429 (50%), Positives = 249/429 (57%), Gaps = 107/429 (24%)
Query: 9 PPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAK 68
PPPP T VPFT E NH ++ + NHPPY EMIY AI ALKEKDGSSK AI K
Sbjct: 7 PPPPATTVPFTVEPSNHVTPAD-----NTNTNHPPYDEMIYTAIGALKEKDGSSKRAIGK 61
Query: 69 YIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSY---------------------KL 107
Y+E+ Y DLPP HS LLTHHL RLK GLLI++KKSY KL
Sbjct: 62 YMEQVYKDLPPTHSALLTHHLNRLKSAGLLILVKKSYKLPGSDPLPVLQAQKPRGRPPKL 121
Query: 108 PSSLPSDIT------------QNAAQ--------------------PVRRGRPP---RSG 132
S +++T Q+A + P RRGRPP RS
Sbjct: 122 KSQPNTELTWPALALNDNPALQSAKRGPGRPKKIAGPVGVSPGPMVPGRRGRPPGTGRSK 181
Query: 133 IPKRRGRPPKPKS---LSNGLKRRP---PKHQLQATVIPFADP-----SLAQPPVPV--- 178
+PKR GRPPKPKS +S+GLKRRP PK + VIPFA P QP VP
Sbjct: 182 LPKRPGRPPKPKSVSAISSGLKRRPGRPPKAESNVNVIPFAAPVAPGLPTVQPIVPTASV 241
Query: 179 --GSPRPRGRPRKNAAALPPP--HAVGGVDSS---------LMVPGRPQKLAVRGRPKNP 225
GSPRPRGRP+K A P +VGG L+ PGRPQKLAV GRPKNP
Sbjct: 242 PNGSPRPRGRPKKIVAGAGAPALSSVGGAPRGRGRPRGVLPLVRPGRPQKLAV-GRPKNP 300
Query: 226 AGRPVGRPKGTTSANI-AQRIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAI 284
A RPVGRPKG+T+A I A + AN++LRRKLE+FQSKVKESL LKPYF+H SPV AIAAI
Sbjct: 301 ARRPVGRPKGSTAAAITAHKAANDDLRRKLEHFQSKVKESLGTLKPYFNHESPVTAIAAI 360
Query: 285 QELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQPLPEPQITYQQQHLQTQ-LHQLFQ 343
QELE+++T DLKAPLRD Q QP P+PQ+ Y+QQ+ Q Q L Q F
Sbjct: 361 QELEVLSTLDLKAPLRDETHQ--------------QPQPQPQV-YEQQYPQPQPLLQQF- 404
Query: 344 FQPHASFPS 352
FQPH S PS
Sbjct: 405 FQPHTSAPS 413
>emb|CAA15421.1| HMR1 protein [Antirrhinum majus]
Length = 400
Score = 167 bits (423), Expect = 4e-40
Identities = 142/386 (36%), Positives = 185/386 (47%), Gaps = 91/386 (23%)
Query: 10 PPPPTAVPFTQ-EAINHAPDSNIPINSSAPA-NHPPYAEMIYRAIEALKEKDGSSKTAIA 67
PP P VP T EA P +N P APA NHPPYAEMI AI AL E++GSSK AIA
Sbjct: 19 PPVPVPVPTTTAEAPIPNPVAN-PTPKRAPAHNHPPYAEMITSAISALNERNGSSKRAIA 77
Query: 68 KYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSD--ITQNAAQPVRR 125
KY+E +T LP H++LL HLKRLKDTG ++M+K SYKLP S PS+ ++ + + R
Sbjct: 78 KYVESNFTGLPATHASLLATHLKRLKDTGDILMVKHSYKLPRSAPSNGAVSADPSTKRRP 137
Query: 126 GRP----------------PRSGI-------------------------PKRRGRPPKPK 144
GRP P+ I P+ RGRPPK
Sbjct: 138 GRPRKDNPQNLQAAVPVFAPQVDINAAPEIAVEQGSVYVELGPINGPSPPRGRGRPPKQG 197
Query: 145 SLSNGLKRRPPKHQL-----QATVIPFADPSLAQPPVPVGSP-RPRGRPRK-------NA 191
G + RPPK + A +P A + P V P RPRGRP K A
Sbjct: 198 GRGRG-RGRPPKTAVAPPAAAAAAVPGAPAAAVAPAAQVKGPGRPRGRPPKPINVVEGGA 256
Query: 192 AALPPPHAVGGV----DSSLMV------PGRPQK---------LAVRGRPKNP---AGRP 229
A P GGV S++ GRP K L +PK P +G+P
Sbjct: 257 VAAPVAVPAGGVLPVAGGSVVAGVAPKRRGRPPKAGGEAKKPRLQTVVKPKTPRKLSGKP 316
Query: 230 VGRPKGTTSANIAQ------RIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAA 283
+GRPK +A ++Q +A +L+ KLE QS+VK + +V+KP + A+ A
Sbjct: 317 LGRPKKNAAAAVSQVADTQLLVAYLDLKGKLENLQSRVKLAANVIKPCL---TTEDAVNA 373
Query: 284 IQELEIVATSDLKAPLRDVPSQKIPE 309
QELE++AT + AP P Q P+
Sbjct: 374 FQELEMLATLNTTAPPNVQPQQPQPQ 399
>gb|AAP31950.1| At3g18035 [Arabidopsis thaliana] gi|27311657|gb|AAO00794.1| linker
histone protein, putative [Arabidopsis thaliana]
gi|42564980|ref|NP_188431.3| histone H1/H5 family
protein [Arabidopsis thaliana]
Length = 480
Score = 140 bits (353), Expect = 6e-32
Identities = 109/277 (39%), Positives = 141/277 (50%), Gaps = 49/277 (17%)
Query: 8 PPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIA 67
P P T +P Q +P ++P HPPY+EMI AI AL E DGSSK AI+
Sbjct: 41 PQPQTQTQIPQPQ-MFQLSPHVSMP--------HPPYSEMICAAIAALNEPDGSSKMAIS 91
Query: 68 KYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKL--PSSLPSDITQNAAQPVRR 125
+YIE YT L AH+ LLTHHLK LK +G+L M+KKSYK+ S+ P+ + AA +
Sbjct: 92 RYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQG 151
Query: 126 GRPPRSGI------------------PKRRGRPPKPK--SLSNGLKRRPPKHQLQATVIP 165
PRS I + RGRPPKPK S L++ PP +Q+QA P
Sbjct: 152 LDVPRSEILHSSNNDPMASGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQP 211
Query: 166 FADPSLAQPPVPVGSP------RPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVR 219
+ Q PVPV +P R GRPRKN +A P + V +S+M + R
Sbjct: 212 IWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSAAPATAPI--VQASVMA----GIMKRR 265
Query: 220 GRPKNPAGRPVGR---PKGTTS-ANIAQRIANENLRR 252
GRP P R GR PK +S A++ +AN RR
Sbjct: 266 GRP--PGRRAAGRQRKPKSVSSTASVYPYVANGARRR 300
Score = 70.5 bits (171), Expect = 7e-11
Identities = 67/258 (25%), Positives = 116/258 (43%), Gaps = 48/258 (18%)
Query: 91 RLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRS---------------GIPK 135
+++ G I ++ + P +P+ +T++A + R R S GI K
Sbjct: 204 QVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSAAPATAPIVQASVMAGIMK 263
Query: 136 RRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRK--NAAA 193
RRGRPP ++ G +R+P A+V P+ R RGRPR+ + ++
Sbjct: 264 RRGRPPGRRAA--GRQRKPKSVSSTASVYPYV----------ANGARRRGRPRRVVDPSS 311
Query: 194 LPPPHAVGGVDSSLMVPG------RPQKLA-----VRGRPKNPAGRPVGRPKGTTSANIA 242
+ VGG + + + PG RP K+ + +PK GRPVGRP+ ++
Sbjct: 312 IVSVAPVGGENVAAVAPGMKRGRGRPPKIGGVISRLIMKPKRGRGRPVGRPRKIGTSVTT 371
Query: 243 QRIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDV 302
+ L++K + FQ KVKE + VLK + + AI++LE + ++ P
Sbjct: 372 GTQDSGELKKKFDIFQEKVKEIVKVLKDGVTSENQA-VVQAIKDLEALTVTETVEP---- 426
Query: 303 PSQKIPEQLPLQEHLLPQ 320
++ E++ +E PQ
Sbjct: 427 ---QVMEEVQPEETAAPQ 441
>gb|AAG50847.1| hypothetical protein, 3' partial [Arabidopsis thaliana]
Length = 332
Score = 137 bits (345), Expect = 5e-31
Identities = 112/313 (35%), Positives = 149/313 (46%), Gaps = 84/313 (26%)
Query: 7 PPPPPPPTAVPFTQE----AINH---------APDSNIPINSSAPA-------------- 39
PPPP + PFT + NH AP +NI + +AP
Sbjct: 14 PPPPQFTSFPPFTNTNPFASPNHPFFTGPTAVAPPNNIHLYQAAPPQQPQTSPVPPHPSI 73
Query: 40 NHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLI 99
+HPPY++MI AI AL E DGSSK AI++YIE YT +P AH LLTHHLK LK +G+L+
Sbjct: 74 SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133
Query: 100 MLKKSYKLPSSLP---------------SDITQNAAQ----PVRRGRPPRSGIPKRRGRP 140
M+KKSYKL S+ P SD N Q PV P++ I + RGRP
Sbjct: 134 MVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQT-IKRGRGRP 192
Query: 141 PK-------PKSLSNGL---------KRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
PK P+ L+NG RP + Q+Q +P QP PV RP
Sbjct: 193 PKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPL------QPQQPV--KRPP 244
Query: 185 GRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKG----TTSAN 240
GRPRK+ + V + V G + + RGRP P+GR GR + + A+
Sbjct: 245 GRPRKDGTS-------PTVKPAASVSGGVETVKRRGRP--PSGRAAGRERKPIVVSAPAS 295
Query: 241 IAQRIANENLRRK 253
+ +AN +RR+
Sbjct: 296 VFPYVANGGVRRR 308
>ref|NP_175295.1| histone H1/H5 family protein [Arabidopsis thaliana]
gi|66792628|gb|AAY56416.1| At1g48620 [Arabidopsis
thaliana]
Length = 479
Score = 137 bits (345), Expect = 5e-31
Identities = 112/313 (35%), Positives = 149/313 (46%), Gaps = 84/313 (26%)
Query: 7 PPPPPPPTAVPFTQE----AINH---------APDSNIPINSSAPA-------------- 39
PPPP + PFT + NH AP +NI + +AP
Sbjct: 14 PPPPQFTSFPPFTNTNPFASPNHPFFTGPTAVAPPNNIHLYQAAPPQQPQTSPVPPHPSI 73
Query: 40 NHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLI 99
+HPPY++MI AI AL E DGSSK AI++YIE YT +P AH LLTHHLK LK +G+L+
Sbjct: 74 SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133
Query: 100 MLKKSYKLPSSLP---------------SDITQNAAQ----PVRRGRPPRSGIPKRRGRP 140
M+KKSYKL S+ P SD N Q PV P++ I + RGRP
Sbjct: 134 MVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQT-IKRGRGRP 192
Query: 141 PK-------PKSLSNGL---------KRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
PK P+ L+NG RP + Q+Q +P QP PV RP
Sbjct: 193 PKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPL------QPQQPV--KRPP 244
Query: 185 GRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKG----TTSAN 240
GRPRK+ + V + V G + + RGRP P+GR GR + + A+
Sbjct: 245 GRPRKDGTS-------PTVKPAASVSGGVETVKRRGRP--PSGRAAGRERKPIVVSAPAS 295
Query: 241 IAQRIANENLRRK 253
+ +AN +RR+
Sbjct: 296 VFPYVANGGVRRR 308
Score = 83.2 bits (204), Expect = 1e-14
Identities = 96/371 (25%), Positives = 154/371 (40%), Gaps = 77/371 (20%)
Query: 8 PPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIA 67
PPPPPPT+V + E P S+ +N + P P A + I+ + + +K +
Sbjct: 145 PPPPPPTSVAPSLEP----PRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAKPDVV 200
Query: 68 KYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRR-- 125
+ LT+ + + L + + ++ P + QPV+R
Sbjct: 201 Q-------------PQPLTNGKLTWEQSELPVSRPEEIQIQ---PPQLPLQPQQPVKRPP 244
Query: 126 GRPPRSGIP----------------KRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADP 169
GRP + G KRRGRPP ++ G +R+P A+V P+
Sbjct: 245 GRPRKDGTSPTVKPAASVSGGVETVKRRGRPPSGRAA--GRERKPIVVSAPASVFPY--- 299
Query: 170 SLAQPPVPVGSPRPRGRPRK------NAAALPPPHAV----GGVDSSLMVPGRPQKLAVR 219
V G R RGRP++ ++ A PPP GG + ++ GR + +
Sbjct: 300 ------VANGGVRRRGRPKRVDAGGASSVAPPPPPPTNVESGGEEVAVKKRGRGRPPKIG 353
Query: 220 G---RPKNP------AGRPVGRP-KGTTSANIAQRIANE--NLRRKLEYFQSKVKESLDV 267
G +P P G+PVGRP K S + R + L++K E FQ++ K+ + V
Sbjct: 354 GVIRKPMKPMRSFARTGKPVGRPRKNAVSVGASGRQDGDYGELKKKFELFQARAKDIVIV 413
Query: 268 LKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQPLPEPQI 327
LK + + AIQ+LE +A + + P QLP +EHL +P E Q
Sbjct: 414 LKSEIGGSGNQAVVQAIQDLEGIAET------TNEPKHMEEVQLPDEEHLETEPEAEGQG 467
Query: 328 TYQQQHLQTQL 338
+ + +Q L
Sbjct: 468 QTEAEAMQEAL 478
>gb|AAF79708.1| T1N15.25 [Arabidopsis thaliana] gi|25405944|pir||G96525 protein
T1N15.25 [imported] - Arabidopsis thaliana
Length = 594
Score = 136 bits (342), Expect = 1e-30
Identities = 104/286 (36%), Positives = 140/286 (48%), Gaps = 58/286 (20%)
Query: 7 PPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAI 66
P PP + Q A P ++ P+ +HPPY++MI AI AL E DGSSK AI
Sbjct: 157 PTAVAPPNNIHLYQAAPPQQPQTS-PVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAI 215
Query: 67 AKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLP-------------- 112
++YIE YT +P AH LLTHHLK LK +G+L+M+KKSYKL S+ P
Sbjct: 216 SRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPP 275
Query: 113 -SDITQNAAQ----PVRRGRPPRSGIPKRRGRPPK-------PKSLSNGL---------K 151
SD N Q PV P++ I + RGRPPK P+ L+NG
Sbjct: 276 RSDFIVNENQPLPDPVLASSTPQT-IKRGRGRPPKAKPDVVQPQPLTNGKLTWEQSELPV 334
Query: 152 RRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPG 211
RP + Q+Q +P QP PV RP GRPRK+ + V + V G
Sbjct: 335 SRPEEIQIQPPQLPL------QPQQPV--KRPPGRPRKDGTS-------PTVKPAASVSG 379
Query: 212 RPQKLAVRGRPKNPAGRPVGRPKG----TTSANIAQRIANENLRRK 253
+ + RGRP P+GR GR + + A++ +AN +RR+
Sbjct: 380 GVETVKRRGRP--PSGRAAGRERKPIVVSAPASVFPYVANGGVRRR 423
Score = 83.2 bits (204), Expect = 1e-14
Identities = 96/371 (25%), Positives = 154/371 (40%), Gaps = 77/371 (20%)
Query: 8 PPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIA 67
PPPPPPT+V + E P S+ +N + P P A + I+ + + +K +
Sbjct: 260 PPPPPPTSVAPSLEP----PRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAKPDVV 315
Query: 68 KYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRR-- 125
+ LT+ + + L + + ++ P + QPV+R
Sbjct: 316 Q-------------PQPLTNGKLTWEQSELPVSRPEEIQIQ---PPQLPLQPQQPVKRPP 359
Query: 126 GRPPRSGIP----------------KRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADP 169
GRP + G KRRGRPP ++ G +R+P A+V P+
Sbjct: 360 GRPRKDGTSPTVKPAASVSGGVETVKRRGRPPSGRAA--GRERKPIVVSAPASVFPY--- 414
Query: 170 SLAQPPVPVGSPRPRGRPRK------NAAALPPPHAV----GGVDSSLMVPGRPQKLAVR 219
V G R RGRP++ ++ A PPP GG + ++ GR + +
Sbjct: 415 ------VANGGVRRRGRPKRVDAGGASSVAPPPPPPTNVESGGEEVAVKKRGRGRPPKIG 468
Query: 220 G---RPKNP------AGRPVGRP-KGTTSANIAQRIANE--NLRRKLEYFQSKVKESLDV 267
G +P P G+PVGRP K S + R + L++K E FQ++ K+ + V
Sbjct: 469 GVIRKPMKPMRSFARTGKPVGRPRKNAVSVGASGRQDGDYGELKKKFELFQARAKDIVIV 528
Query: 268 LKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQPLPEPQI 327
LK + + AIQ+LE +A + + P QLP +EHL +P E Q
Sbjct: 529 LKSEIGGSGNQAVVQAIQDLEGIAET------TNEPKHMEEVQLPDEEHLETEPEAEGQG 582
Query: 328 TYQQQHLQTQL 338
+ + +Q L
Sbjct: 583 QTEAEAMQEAL 593
>dbj|BAA11766.1| high mobility group protein [Canavalia gladiata]
gi|1483173|dbj|BAA13133.1| high mobility group protein
[Canavalia gladiata] gi|7439663|pir||T09584 high
mobility group protein HMGI/Y-1 - sword bean
Length = 178
Score = 119 bits (299), Expect = 1e-25
Identities = 77/188 (40%), Positives = 101/188 (52%), Gaps = 35/188 (18%)
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P + PPY EM+ +A++AL E GS+K+AI+KYIE Y +LP H+TLL HHL ++KD+G
Sbjct: 9 PPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHLNKMKDSGE 68
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRG---RPPKPKSLSNGLKRRP 154
L+ LK +Y P NA RGRPP+ +P G PP+P+ RP
Sbjct: 69 LVFLKNNYMKPD-------PNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRG-------RP 114
Query: 155 PKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQ 214
PK P A P + V GS RPRGRP+K A + P AV + + GRP
Sbjct: 115 PKD-------PNAPPKSPKTKVSTGSGRPRGRPKKIARS---PAAVA---PTPVPSGRP- 160
Query: 215 KLAVRGRP 222
RGRP
Sbjct: 161 ----RGRP 164
>ref|XP_482501.1| putative high mobility group I/Y (HMGI/Y protein) [Oryza sativa
(japonica cultivar-group)] gi|38175502|dbj|BAD01198.1|
putative high mobility group I/Y (HMGI/Y protein) [Oryza
sativa (japonica cultivar-group)]
gi|25553691|dbj|BAC24935.1| putative high mobility group
I/Y (HMGI/Y protein) [Oryza sativa (japonica
cultivar-group)]
Length = 178
Score = 116 bits (290), Expect = 1e-24
Identities = 77/186 (41%), Positives = 98/186 (52%), Gaps = 25/186 (13%)
Query: 35 SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
+S P PPY EMI AIE L EK GS+K+AI+K+IE Y DLPPAH++LLT HL R+K+
Sbjct: 7 ASKPPPLPPYPEMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKE 66
Query: 95 TGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRSGIPKRRGRPPKPKSLSNGLKRR 153
+G LI LK +Y + P A P R RGRPP+ P PP PK S + R
Sbjct: 67 SGELIFLKNNY-FRADAPD------APPKRGRGRPPKPRDP--NAPPPPPKPSSPRPRGR 117
Query: 154 PPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRP 213
PPK ++ P+ P+ RGRP K A P P G S+ + GR
Sbjct: 118 PPK---------------SKDPISDAIPKSRGRPPKKAKTAPAPPPAAGDGSAPVKRGRG 162
Query: 214 QKLAVR 219
+ VR
Sbjct: 163 RPPKVR 168
>emb|CAB40848.2| HMGI/Y protein [Zea mays]
Length = 191
Score = 115 bits (289), Expect = 2e-24
Identities = 82/202 (40%), Positives = 106/202 (51%), Gaps = 32/202 (15%)
Query: 35 SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
++ P+ PPY EMI AIE L +K GS+K+AI+KYIE Y LPPAH++LLT HL R+K+
Sbjct: 6 ATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKE 65
Query: 95 TGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRSGIPKRRGRPPKPKSLSNGLKRR 153
+G L+ LK +Y + P A P R RGRPP++ P PK S + + R
Sbjct: 66 SGELVFLKNNY-FRAGAPD------APPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGR 118
Query: 154 PPKHQ--LQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA----AALPPPHAVGGVDSSL 207
PPK + L+A V G P+PRGRP K A AA P P D S
Sbjct: 119 PPKAKSPLEAAV----------KQATAGMPKPRGRPPKKAKTEGAASPSPSPAPAGDGS- 167
Query: 208 MVPGRPQKLAVRGRPKNPAGRP 229
PG+ RGR + P RP
Sbjct: 168 -TPGK------RGRGRPPKVRP 182
>gb|AAG00601.1| high mobility group I/Y-2 [Zea mays]
Length = 193
Score = 114 bits (286), Expect = 3e-24
Identities = 80/202 (39%), Positives = 104/202 (50%), Gaps = 30/202 (14%)
Query: 35 SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
++ P+ PPY EMI AIE L +K GS+K+AI+KYIE Y LPPAH++LLT HL R+K+
Sbjct: 6 ATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKE 65
Query: 95 TGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRSGIPKRRGRPPKPKSLSNGLKRR 153
+G L+ LK +Y + P A P R RGRPP++ P PK S + + R
Sbjct: 66 SGELVFLKNNY-FRAGAPD------APPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGR 118
Query: 154 PPKHQ--LQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA----AALPPPHAVGGVDSSL 207
PPK + L+A V G P+PRGRP K A AA P P
Sbjct: 119 PPKAKSPLEAAV----------KQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDG 168
Query: 208 MVPGRPQKLAVRGRPKNPAGRP 229
PG+ RGR + P RP
Sbjct: 169 STPGK------RGRGRPPKVRP 184
>emb|CAB40849.1| HMGI/Y protein [Zea mays]
Length = 190
Score = 114 bits (285), Expect = 4e-24
Identities = 81/199 (40%), Positives = 101/199 (50%), Gaps = 27/199 (13%)
Query: 35 SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
++ P+ PPY EMI AIE L EK GS+K+AI+KYIE Y LPPAH +LLT HL +K+
Sbjct: 6 ATKPSPIPPYPEMILAAIEGLDEKSGSNKSAISKYIEGKYGSLPPAHESLLTAHLAAMKE 65
Query: 95 TGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRP 154
+G L+ LK +Y +D NA RGRPP++ P P PKS S+ RP
Sbjct: 66 SGELVFLKNNY-----FRADAPPNAPPKRGRGRPPKARDP--NAPAPAPKSPSSRGAGRP 118
Query: 155 PKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA----AALPPPHAVGGVDSSLMVP 210
PK + A G P+PRGRP K A AA P P D S P
Sbjct: 119 PKAKSPLEARREAGHR--------GMPKPRGRPPKKAKTEGAASPSPSPAPAGDGS--TP 168
Query: 211 GRPQKLAVRGRPKNPAGRP 229
G+ RGR + P RP
Sbjct: 169 GK------RGRGRPPKVRP 181
>gb|AAT08736.1| high mobility group I/Y-2 [Hyacinthus orientalis]
Length = 180
Score = 113 bits (283), Expect = 7e-24
Identities = 82/186 (44%), Positives = 103/186 (55%), Gaps = 43/186 (23%)
Query: 42 PPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTD-LPPAHSTLLTHHLKRLKDTGLLIM 100
P Y+EMI AIEAL EK GS+K+AI+KYIE Y + LP AHS+LLT HL R+K++G ++M
Sbjct: 5 PSYSEMIMGAIEALDEKAGSNKSAISKYIESKYAEQLPEAHSSLLTAHLARMKESGEILM 64
Query: 101 LKKSYKLPSSLPSDITQNAAQPVR-RGRPPR----------SGIPKRRGRPPKPK----- 144
+K +Y P A P R RGRPP+ S P+ RGRPPKPK
Sbjct: 65 VKNNYMKPGP--------EATPKRGRGRPPKPKTPLLAGSVSPSPRPRGRPPKPKDPLAA 116
Query: 145 ---SLSNGLKR---RPPKHQLQATV-----IPFADPSLAQPPVPVGSPRPRGRPRKNAAA 193
++G+ R RPPK +A V IP PS+A P P G R RGRP K
Sbjct: 117 AVAKAASGMPRQRGRPPK---KARVGGGEDIPPTPPSVAAPAAPPGIKRGRGRPPK---- 169
Query: 194 LPPPHA 199
+ PP A
Sbjct: 170 VKPPFA 175
>dbj|BAA11767.1| high mobility group protein [Canavalia gladiata]
gi|1483175|dbj|BAA13134.1| high mobility group protein
[Canavalia gladiata] gi|7439645|pir||T09585 high
mobility group protein HMGI/Y-2 - sword bean
Length = 178
Score = 113 bits (282), Expect = 1e-23
Identities = 73/197 (37%), Positives = 98/197 (49%), Gaps = 42/197 (21%)
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P + PPY EMI +A+++L E +GS+K+AI+KYIE +LP HSTLL HHL ++K++G
Sbjct: 9 PPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHLNKMKESGE 68
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPK-SLSNGLKRRPPK 156
L+ LK +Y P + P +RG RGRPPKPK L G PP+
Sbjct: 69 LVFLKNNYMKP---------DPTSPPKRG----------RGRPPKPKVPLPPGTVLSPPR 109
Query: 157 HQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
+ + P A + V GS RPRGRP+K A +
Sbjct: 110 PRGRPPKDPNAPTKSPKAKVSTGSGRPRGRPKKIA----------------------RSA 147
Query: 217 AVRGRPKNPAGRPVGRP 233
AV P+GRP GRP
Sbjct: 148 AVVAPTPGPSGRPRGRP 164
>pir||T02029 DNA-binding protein pabf - common tobacco gi|555655|gb|AAA50196.1|
DNA-binding protein
Length = 546
Score = 112 bits (281), Expect = 1e-23
Identities = 72/156 (46%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 21 EAINHAPDSNIPINSSAPA-----NHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYT 75
+ +NHAP P PA HPPYAEMI AI ALKE+DGSS+ AIAKYI+ YT
Sbjct: 20 QVVNHAPTPTPP-QPPPPAPSFSPTHPPYAEMITAAITALKERDGSSRIAIAKYIDRVYT 78
Query: 76 DLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPK 135
+LPP HS LLTHHLKRLK++G L M+K SY L A P PP S
Sbjct: 79 NLPPNHSALLTHHLKRLKNSGYLAMVKHSYML------------AGPPGSAPPPPSADAD 126
Query: 136 RRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSL 171
G SLS RPPK L+ P A P +
Sbjct: 127 SNGVGTDVSSLSKRKPGRPPK--LKPEAQPHAQPQV 160
Score = 83.6 bits (205), Expect = 8e-15
Identities = 75/238 (31%), Positives = 112/238 (46%), Gaps = 55/238 (23%)
Query: 104 SYKLPSSLPSDITQNAAQPV-----RRGRPPRSGIPKRRGRPPKPKSLS--NGLKR--RP 154
S + P P +T NAA RRGRP ++ +P RRGRP K +++ NG
Sbjct: 308 SKRRPGRPPKSVTVNAAPGSAMGSGRRGRPRKNSVPGRRGRPRKNAAVAAANGGANVANI 367
Query: 155 PKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPP------------------ 196
P T +P P + +P+ RGRP +++ PP
Sbjct: 368 PSVGANVTNVPAGGV-----PGAITTPKRRGRPPRSSG--PPAATVGVTDVPIAAAFDTE 420
Query: 197 --PHAVGG---VDSSLMVP-----GRPQK-------LAVRGRPKNPAGRPVGRP-KGTTS 238
P+AVGG ++ + P GRP K RP+ +G+P+GRP K TS
Sbjct: 421 NLPNAVGGGGVTNNGALPPLGKRRGRPPKSYGAAAAAPTVKRPRKLSGKPLGRPRKNVTS 480
Query: 239 ANIAQR---IANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATS 293
++ +A E L+ KLE+ QS++KE+ + LKP + SP A+AA+QELE +A +
Sbjct: 481 PAVSDPKLVVAYEELKGKLEHMQSRIKEAANALKPCLNAESPAIALAALQELEELAAA 538
Score = 47.4 bits (111), Expect = 7e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 32/162 (19%)
Query: 112 PSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSL 171
P+ + + R GRP + G + PK S G KRRP + TV A P
Sbjct: 270 PAPGAEESTAKRRPGRPRKDGSTVVKPVEPKLPDQSGGSKRRPGRPPKSVTV--NAAPGS 327
Query: 172 AQPPVPVGSPRP------RGRPRKNAAA-----------LPPPHA------VGGVDSSLM 208
A G PR RGRPRKNAA +P A GGV ++
Sbjct: 328 AMGSGRRGRPRKNSVPGRRGRPRKNAAVAAANGGANVANIPSVGANVTNVPAGGVPGAIT 387
Query: 209 VPGRPQKLAVRGRPKNPAGRPVGRPKGTTSANIAQRIANENL 250
P R RGRP +G P G T IA ENL
Sbjct: 388 TPKR------RGRPPRSSGPPAA-TVGVTDVPIAAAFDTENL 422
>emb|CAA67752.1| HMG-I/Y [Pisum sativum] gi|899367|emb|CAA61747.1| HMGI/Y [Pisum
sativum] gi|2129885|pir||S57948 HMGI/Y protein - garden
pea
Length = 197
Score = 108 bits (271), Expect = 2e-22
Identities = 75/202 (37%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P + PPY E+I +AI++L E +GS+K+AI+ YIE Y +LP HS +L +HL ++K++G
Sbjct: 9 PLSLPPYPELILKAIDSLNEPNGSNKSAISNYIESVYGELPEGHSVVLLYHLNQMKESGD 68
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKH 157
L+ K +Y P NA RGRPP++ P PP + + RPPK
Sbjct: 69 LVFAKNNYLRPD-------PNAPPKRGRGRPPKAKDP--LASPPSGAVSTPRPRGRPPKD 119
Query: 158 QLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA------AALPPPHAVGGVDSSLMVPG 211
P A P + P GS RPRGRP+K A A+ P P +V V+ ++VP
Sbjct: 120 -------PNAPP---KTPKASGSGRPRGRPKKIARTEDVDASTPSPVSVAAVNVDVVVP- 168
Query: 212 RPQKLAVRGRPKNPAGRPVGRP 233
V P + +GRP GRP
Sbjct: 169 -----CVAAVPTS-SGRPRGRP 184
>gb|AAF22135.1| high mobility group protein I/Y [Brassica napus]
Length = 203
Score = 104 bits (259), Expect = 5e-21
Identities = 70/190 (36%), Positives = 95/190 (49%), Gaps = 40/190 (21%)
Query: 37 APANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTG 96
+P + PPY +MI AIEA + +G +KTAIAK+IE T LPP+H TLL++HL ++K +G
Sbjct: 21 SPFSLPPYPQMIMEAIEASNDANGCNKTAIAKHIESTQTSLPPSHMTLLSYHLNQMKQSG 80
Query: 97 LLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRS----------------GIPKRRGR 139
+ M+K +Y P A P R RGRPP++ P+ RGR
Sbjct: 81 QIAMVKNNYMKPDP--------QAPPKRGRGRPPKAKPQGESSHVAVPAPSVSSPRPRGR 132
Query: 140 PPKPKSLSNGL-------------KRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGR 186
PPK K S+ + + RPPK Q + AD A+ P G R RGR
Sbjct: 133 PPKAKGPSSEVETKVAAPSGSGRPRGRPPKKQKTESEAVKADVEPAE--APAGERRGRGR 190
Query: 187 PRKNAAALPP 196
P K A+ P
Sbjct: 191 PPKAKPAMVP 200
>dbj|BAD36308.1| DNA binding protein PF1 [Oryza sativa (japonica cultivar-group)]
gi|7439646|pir||T03931 DNA binding protein PF1 - rice
gi|453692|gb|AAA33914.1| AT hook 1 from AA 98-106, AT
hook 2 from AA 129-137, AT hook 3 from AA 154-162, AT
hook 4 from AA 192-200
Length = 213
Score = 102 bits (254), Expect = 2e-20
Identities = 73/188 (38%), Positives = 89/188 (46%), Gaps = 30/188 (15%)
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTD-LPPAHSTLLTHHLKRLKDTG 96
PA P Y EMI AIEAL +++GS+KTAI+++IE Y LPPAH +LLT HL R+K TG
Sbjct: 19 PAATPSYPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTG 78
Query: 97 LLIMLKKSY------KLPSS-------LPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKP 143
L K +Y LP P D AA P P + P+ RGRPPKP
Sbjct: 79 ELAFSKNNYFRGDDPSLPPKRGRGRPPKPKDAAAAAAAPAPAPAAPAASSPRPRGRPPKP 138
Query: 144 K--------SLSNGLKR---RPPKHQLQATVIPFADPSLAQPPVPVGSPRP-----RGRP 187
K ++G+ R RPPK P P+ A P P RGRP
Sbjct: 139 KDPLAEAVAKATSGMPRARGRPPKKAKVEQEDPIGAPAAASAPAAAAEAAPPVKRGRGRP 198
Query: 188 RKNAAALP 195
K A P
Sbjct: 199 PKVRPAAP 206
>emb|CAA71797.1| HMG-I/Y [Arabidopsis thaliana]
Length = 204
Score = 102 bits (253), Expect = 2e-20
Identities = 74/220 (33%), Positives = 100/220 (44%), Gaps = 56/220 (25%)
Query: 23 INHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHS 82
++H S+ + + PPY +MI AIE+L +K+G +KT IAK+IE LPP+H+
Sbjct: 5 LHHGSASDTHSSELPSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHT 64
Query: 83 TLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPR----------- 130
TLL++HL ++K TG LIM+K +Y P A P R RGRPP+
Sbjct: 65 TLLSYHLNQMKKTGQLIMVKNNYMKPDP--------DAPPKRGRGRPPKQKTQAESDAAA 116
Query: 131 ----------SGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGS 180
+ P+ RGRPPKPK S PP Q V GS
Sbjct: 117 AAVVAATVVSTDPPRSRGRPPKPKDPS-----EPP-----------------QEKVITGS 154
Query: 181 PRPRG----RPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
RPRG RPR ++ + P GRP K+
Sbjct: 155 GRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKV 194
>emb|CAA67564.1| HMG-I/Y protein [Arabidopsis thaliana] gi|28466927|gb|AAO44072.1|
At1g14900 [Arabidopsis thaliana]
gi|8778223|gb|AAF79232.1| F10B6.31 [Arabidopsis
thaliana] gi|15223947|ref|NP_172943.1|
high-mobility-group protein / HMG-I/Y protein
[Arabidopsis thaliana] gi|2809402|gb|AAB97739.1| high
mobility group protein a [Arabidopsis thaliana]
Length = 204
Score = 101 bits (251), Expect = 4e-20
Identities = 74/220 (33%), Positives = 99/220 (44%), Gaps = 56/220 (25%)
Query: 23 INHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHS 82
++H S+ + + PPY +MI AIE+L +K+G +KT IAK+IE LPP+H
Sbjct: 5 LHHGSASDTHSSELPSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHM 64
Query: 83 TLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPR----------- 130
TLL++HL ++K TG LIM+K +Y P A P R RGRPP+
Sbjct: 65 TLLSYHLNQMKKTGQLIMVKNNYMKPDP--------DAPPKRGRGRPPKQKTQAESDAAA 116
Query: 131 ----------SGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGS 180
+ P+ RGRPPKPK S PP Q V GS
Sbjct: 117 AAVVAATVVSTDPPRSRGRPPKPKDPS-----EPP-----------------QEKVITGS 154
Query: 181 PRPRG----RPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
RPRG RPR ++ + P GRP K+
Sbjct: 155 GRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKV 194
>emb|CAA61276.1| AT1 [Oryza sativa (indica cultivar-group)] gi|1362172|pir||S57459
hook-containing protein AT1 - rice
Length = 538
Score = 101 bits (251), Expect = 4e-20
Identities = 83/226 (36%), Positives = 114/226 (49%), Gaps = 24/226 (10%)
Query: 26 APDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLL 85
A S+ P +A HP Y EMI RA++ L + SS+ AIAKYI + ++ LP H LL
Sbjct: 6 ASPSSAPGPGAAGRPHPTYKEMILRALKELPDPIISSRRAIAKYISDNFSGLPSHHDALL 65
Query: 86 THHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPR----SGIPKRR--GR 139
T HL+RL+ GLL+M SY L +S AA+ RGRPP+ S P++R GR
Sbjct: 66 TVHLRRLRSQGLLLMSGHSYLLSTS------ATAARGRGRGRPPKKASSSAPPQKRGPGR 119
Query: 140 PPKPKSL--SNGLKRRPPKHQLQATVIPFA----DPSLAQPPVPVGSPRPRGRPRKNAAA 193
P K +L L+ +P + + + +P A + A + + R GRPRKNAAA
Sbjct: 120 PRKNTALFPVPVLEAKPGRGRPRKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAA 179
Query: 194 LPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTSA 239
P V PGRP+K A + A R GRP+ +A
Sbjct: 180 TPLRLGV------KRGPGRPRKNAAATPLRLGAKRGPGRPRKNATA 219
Score = 40.0 bits (92), Expect = 0.11
Identities = 37/95 (38%), Positives = 43/95 (44%), Gaps = 12/95 (12%)
Query: 128 PPRSGIPKRRGRPPKPKS---LSNGLKRRP--PKHQLQATVIPFADPSLAQPPVPVGSPR 182
P R G + GRP K + LS G+KR P P+ A P A P P P+ R
Sbjct: 201 PLRLGAKRGPGRPRKNATATPLSLGVKRGPGRPRKNAAAAASPVAPP----PASPL--KR 254
Query: 183 PRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLA 217
GRPRKNA L P G PGRP+K A
Sbjct: 255 GVGRPRKNATPLVKP-GPGRPSGFKRGPGRPRKNA 288
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 720,485,267
Number of Sequences: 2540612
Number of extensions: 36940994
Number of successful extensions: 240736
Number of sequences better than 10.0: 3118
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 2877
Number of HSP's that attempted gapping in prelim test: 218621
Number of HSP's gapped (non-prelim): 15656
length of query: 352
length of database: 863,360,394
effective HSP length: 129
effective length of query: 223
effective length of database: 535,621,446
effective search space: 119443582458
effective search space used: 119443582458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0042.15