BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0037a.3
(1248 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 339 3e-91
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 304 1e-80
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 301 1e-79
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 290 2e-76
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 286 4e-75
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 284 1e-74
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 284 2e-74
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 280 2e-73
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 279 4e-73
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 278 6e-73
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 276 2e-72
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 271 1e-70
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 269 5e-70
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 257 2e-66
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 257 2e-66
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 247 2e-63
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 234 1e-59
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 216 4e-54
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 215 7e-54
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 215 9e-54
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 339 bits (870), Expect = 3e-91
Identities = 195/488 (39%), Positives = 285/488 (57%), Gaps = 19/488 (3%)
Query: 7 YGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGD---PPNLLAMGKFR 63
Y +P++S R+ LW EL+ + P ++ GDFNT L ++ GG+ P+ LA G
Sbjct: 7 YAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGNGRLSPDSLAFG--- 63
Query: 64 DCLDDCYLSDLGFKGPPFTW-----EGRGVKERLDWALGNDQWLRSFPEASIFHLPQLKS 118
D +++ L DLGFKG FTW E V +RLD + EA + HLP + S
Sbjct: 64 DWINELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMAS 123
Query: 119 DHKPLLLQLSPIDIDHSQRPNRQVFGEIGRRKRHLMRRLEGINSRLRMQHIPYLEKLQKR 178
DH PL +QL P+ ++ NR+VFG+I RK L+ ++ + L + L ++
Sbjct: 124 DHAPLYVQLEPLQQRKLRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEV 183
Query: 179 LWKEYQTTLIQEELLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVT 238
L KE L QEE LW QKSR ++ GD+NT FFHTST++RR+RN+IE+L + VT
Sbjct: 184 LLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVT 243
Query: 239 DPITLRSMAIDFFQHLYTSPGTDVLYHVRNAFPTLPRDTLLEISNP--LEA---DEIKAA 293
D + L +MA+ +++ LY+ + + VRN PT ++ E L+A E+ +A
Sbjct: 244 DKVELEAMALTYYKRLYS---LEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSA 300
Query: 294 VFSMRALKAPGPDGLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKID 353
V SM KAPGPDG +F+Q W+T+G SV +F+ + + ND L+VLI K+
Sbjct: 301 VKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVA 360
Query: 354 RPNLLSQYRLIGICNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEV 413
+P + Q+R + +CNV++K +TK + RLK V+ LI P Q SFIPGR S DNI++ QE
Sbjct: 361 KPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEA 420
Query: 414 FHSMRYLKRKKGWIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQV 473
HSMR K +KGW+ +K+DLEKAYDR+ W FL++TL GL + I+ V+ S V
Sbjct: 421 VHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSV 480
Query: 474 LFNGSKTE 481
L+NG +T+
Sbjct: 481 LWNGERTD 488
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 304 bits (779), Expect = 1e-80
Identities = 186/525 (35%), Positives = 275/525 (51%), Gaps = 49/525 (9%)
Query: 3 VSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKF 62
++F YG P + R+ +W LR I ++ PW+V+GDFN L + + +P M F
Sbjct: 650 ITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNF 709
Query: 63 RDCLDDCYLSDLGFKGPPFTWEGR-----GVKERLDWALGNDQWLRSFPEASIFHLPQLK 117
RD L DC L DLGFKG P T++ R VK RLD A+ +D+W FPEA + HL
Sbjct: 710 RDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPC 769
Query: 118 SDHKPLLLQLSPIDIDHSQRP-----------------------NRQVFGEIGRRKRHLM 154
SDH P+LL+ D ++ N V ++G L
Sbjct: 770 SDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALG 829
Query: 155 RRLEGINS--RLRMQHIPY-LEKLQKRL----------------WKEYQTTLIQEELLWR 195
R + + S + +++++ LEK +K+L L +EE+LW
Sbjct: 830 RVMSALRSWGKTKVKNVGRELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWL 889
Query: 196 QKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLY 255
Q+SRV WL GD+NTRFFH+ + R K+NKI L DE+G + L +MA ++FQ +Y
Sbjct: 890 QRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEVY 949
Query: 256 TSPGTDVLYHVRNAFPTLPRDTLLE-ISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQ 314
+ + V F D + E + + +EI A+F + LK+PGPDG F+Q
Sbjct: 950 KADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQ 1009
Query: 315 SQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTL 374
W T+ S ++ +++ Q VNDT IVLIPK D+P L YR I +CNV+YK +
Sbjct: 1010 RNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVV 1069
Query: 375 TKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDL 433
+K L NRL+ +L DL+S Q +FI GR +DN ++A E FHS++ K+ A K+DL
Sbjct: 1070 SKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDL 1129
Query: 434 EKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGS 478
KAYDR++W FL+ L ++G + I+ CV+ + V FNG+
Sbjct: 1130 SKAYDRVDWRFLELALNKLGFAHRWVSWIMSCVTTVRYSVKFNGT 1174
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 301 bits (770), Expect = 1e-79
Identities = 185/525 (35%), Positives = 275/525 (52%), Gaps = 49/525 (9%)
Query: 3 VSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKF 62
++F YG P + R+ +W LR I ++ PW+V+GDFN L + + +P M F
Sbjct: 738 ITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNF 797
Query: 63 RDCLDDCYLSDLGFKGPPFTWEGR-----GVKERLDWALGNDQWLRSFPEASIFHLPQLK 117
RD L DC L DLGFKG P T++ R VK RLD A+ +D+W FPEA + HL
Sbjct: 798 RDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPC 857
Query: 118 SDHKPLLLQLSPIDIDHSQRP-----------------------NRQVFGEIGRRKRHLM 154
SDH P+LL+ D ++ N V ++G L
Sbjct: 858 SDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALG 917
Query: 155 RRLEGINS--RLRMQHI-PYLEKLQKRL----------------WKEYQTTLIQEELLWR 195
R + + S + +++++ LEK +K+L L +EE+LW
Sbjct: 918 RVMSALRSWSKTKVKNVGKELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWL 977
Query: 196 QKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLY 255
Q+SRV WL GD+NTRFFH+ + R K+NKI L DE+G + L +MA ++FQ +Y
Sbjct: 978 QRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVY 1037
Query: 256 TSPGTDVLYHVRNAFPTLPRDTLLE-ISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQ 314
+ + V F D + E + + +EI A+F + LK+P PDG F+Q
Sbjct: 1038 KADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQ 1097
Query: 315 SQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTL 374
W T+ S ++ +++ Q + VNDT IVLIPK D+P L YR I +CNV+YK +
Sbjct: 1098 RNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVV 1157
Query: 375 TKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDL 433
+K L NRL+ +L DL+S Q +FI GR +DN ++A E FHS++ K+ A K+DL
Sbjct: 1158 SKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDL 1217
Query: 434 EKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGS 478
KAYDR++W FL+ L ++G + I+ CV+ + V FNG+
Sbjct: 1218 SKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGT 1262
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 290 bits (743), Expect = 2e-76
Identities = 179/500 (35%), Positives = 263/500 (51%), Gaps = 49/500 (9%)
Query: 3 VSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKF 62
++F YG P + R+ +W LR I ++ PW+V+GDFN L + + +P M F
Sbjct: 650 ITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNF 709
Query: 63 RDCLDDCYLSDLGFKGPPFTWEGR-----GVKERLDWALGNDQWLRSFPEASIFHLPQLK 117
RD L DC L DLGFKG P T++ R VK RLD A+ +D+W FPEA + HL
Sbjct: 710 RDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPC 769
Query: 118 SDHKPLLLQLSPIDIDHSQRP-----------------------NRQVFGEIGRRKRHLM 154
SDH P+LL+ D ++ N V ++G L
Sbjct: 770 SDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALG 829
Query: 155 RRLEGINS--RLRMQHIPY-LEKLQKRL----------------WKEYQTTLIQEELLWR 195
R + + S + +++++ LEK +K+L L +EE+LW
Sbjct: 830 RVMSALRSWGKTKVKNVGRELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWL 889
Query: 196 QKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLY 255
Q+SRV WL GD+NTRFFH+ + R K+NKI L DE+G + L +MA ++FQ +Y
Sbjct: 890 QRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEVY 949
Query: 256 TSPGTDVLYHVRNAFPTLPRDTLLE-ISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQ 314
+ + V F D + E + + +EI A+F + LK+PGPDG F+Q
Sbjct: 950 KADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQ 1009
Query: 315 SQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTL 374
W T+ S ++ +++ Q VNDT IVLIPK D+P L YR I +CNV+YK +
Sbjct: 1010 RNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVV 1069
Query: 375 TKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDL 433
+K L NRL+ +L DL+S Q +FI GR +DN ++A E FHS++ K+ A K+DL
Sbjct: 1070 SKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDL 1129
Query: 434 EKAYDRLEWSFLKDTLLEVG 453
KAYDR++W FL+ L ++G
Sbjct: 1130 SKAYDRVDWRFLELALNKLG 1149
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 286 bits (731), Expect = 4e-75
Identities = 184/546 (33%), Positives = 277/546 (50%), Gaps = 54/546 (9%)
Query: 3 VSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKF 62
V+F YG P + R+ +W LR I ++ PW V+GDFN + + + P M F
Sbjct: 832 VTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDF 891
Query: 63 RDCLDDCYLSDLGFKGPPFTWEG-----RGVKERLDWALGNDQWLRSFPEASIFHLPQLK 117
RD L DC L DLGFKG P T++ R VK RLD + +D+W + A + HL
Sbjct: 892 RDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPC 951
Query: 118 SDHKPLLLQLSPIDIDHSQRPN---------------------------RQVFGEIGRRK 150
SDH P+LL L D H R + G+I +
Sbjct: 952 SDHCPILLNLVVKD-PHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKAL 1010
Query: 151 RHLMRRLEGINSRLRMQHIPY-LEKLQKRLWKEYQTT----------------LIQEELL 193
+M L SR +++++ LEK +K+L + ++ L +EE+L
Sbjct: 1011 AKVMTALRSW-SRAKVKNVGRELEKARKKLAELIESNADRTVIRNATDHMNELLYREEML 1069
Query: 194 WRQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQH 253
W Q+SRV WL D+NT+FFH+ + R K+NKI L D + + + L SMA ++FQ
Sbjct: 1070 WLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQD 1129
Query: 254 LYTSPGTDVLYHVRNAFPTLPRDTLLE-ISNPLEADEIKAAVFSMRALKAPGPDGLNTLF 312
+YT+ V D + E + DEI A+F + LK+PGPDG F
Sbjct: 1130 VYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARF 1189
Query: 313 FQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYK 372
+Q W TI + ++ ++ Q VNDT IVLIPK ++P L +R I +CNV+YK
Sbjct: 1190 YQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYK 1249
Query: 373 TLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKI 431
++K L NRL+ +L DL+S Q +F+ GR +DN ++A E FH+M+ K+ A K+
Sbjct: 1250 VVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKL 1309
Query: 432 DLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGSKTE-FPSFQGHPP 490
DL KAYDR++W FL+ + ++G R + + I+ CV+ + V FNG+ + F +G
Sbjct: 1310 DLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQ 1369
Query: 491 R*PIIP 496
P++P
Sbjct: 1370 GDPLLP 1375
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 284 bits (727), Expect = 1e-74
Identities = 168/474 (35%), Positives = 253/474 (52%), Gaps = 21/474 (4%)
Query: 4 SFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKFR 63
+F YG P + R+ +W L I ++ W+V+GDFN L + + P + M FR
Sbjct: 537 TFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFR 596
Query: 64 DCLDDCYLSDLGFKGPPFTWEGR-----GVKERLDWALGNDQWLRSFPEASIFHLPQLKS 118
D LD C L DLG G P T++ R VK RLD AL +D+W F + + HL S
Sbjct: 597 DVLDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCS 656
Query: 119 DHKPLLLQL--SPIDIDHSQRPNRQVFGEIGRRKRHLMRRLE-GINSRLRMQHIPYLEKL 175
+H P++L+L S D S++ + + E+ + ++ L LE G + Q Y+ +L
Sbjct: 657 NHCPIVLKLHGSVPDQSWSKKKYKNIGRELEKTRKKLSNLLEAGTDKAAIRQTSDYMNEL 716
Query: 176 QKRLWKEYQTTLIQEELLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGV 235
L +EE+LW Q+SRV WL GD+NT+FFH R K+NKI L D G
Sbjct: 717 -----------LYREEMLWLQRSRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGT 765
Query: 236 SVTDPITLRSMAIDFFQHLYTS-PGTDVLYHVRNAFPTLPRDTLLEISNPLEADEIKAAV 294
+ + MA +F+ ++T+ P D R P + + + + DEI A+
Sbjct: 766 FHRSKMVMEQMATQYFKDMFTADPNLDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANAL 825
Query: 295 FSMRALKAPGPDGLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDR 354
F + LKAPG DG F+Q W I + +V+ +++ + VNDT IVLIPKI++
Sbjct: 826 FQIGPLKAPGTDGFLARFYQRNWGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQ 885
Query: 355 PNLLSQYRLIGICNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVF 414
P L +R I +CNVIYK L+K L NRL+ L +LIS NQ +F+P R +DN ++A E F
Sbjct: 886 PRDLRDFRPISLCNVIYKVLSKCLVNRLRPFLDELISKNQSAFVPRRMITDNALLAFECF 945
Query: 415 HSMRYLKR-KKGWIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVS 467
H ++ K + A K+DL KAYDR++W FL+ ++ + G + ++ C+S
Sbjct: 946 HFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFSHCWVSWVMTCIS 999
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 284 bits (726), Expect = 2e-74
Identities = 160/440 (36%), Positives = 238/440 (53%), Gaps = 32/440 (7%)
Query: 74 LGFKGPPFTW-----EGRGVKERLDWALGNDQWLRSFPEASIFHLPQLKSDHKPLLLQLS 128
+GFKG FTW E V +RLD L + EA + + + +P + +
Sbjct: 1 MGFKGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALLCPAQNVDARRRPFRFEAA 60
Query: 129 ---------------------PIDIDHSQ----RPNRQVFGEIGRRKRHLMRRLEGINSR 163
P+ ++ + + N++VFG I RK ++ L+ +
Sbjct: 61 WLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNIHVRKEKVVSDLKAVQDL 120
Query: 164 LRMQHIPYLEKLQKRLWKEYQTTLIQEELLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKR 223
L + L + L KE+ L QEE LW QKSR L GD+NT FFHTST++RR+R
Sbjct: 121 LEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALGDRNTTFFHTSTVIRRRR 180
Query: 224 NKIEALTDEHGVSVTDPITLRSMAIDFFQHLYTSPGTDVLYHV--RNAFPTLPRDTLLEI 281
N+IE L D VT+ L +A+D+++ LY+ V+ FP L R+ +
Sbjct: 181 NRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRGTLPTEGFPRLTREEKNNL 240
Query: 282 SNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREV 341
+ P DE+ AV SM KAPGPDG +F+Q W+T+G SV +F+ + + +
Sbjct: 241 NRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVSKFVMEFFESGVLPKST 300
Query: 342 NDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGR 401
ND L+VL+ K+ +P ++Q+R + +CNV++K +TK + RLK V+ LI P Q SFIPGR
Sbjct: 301 NDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLIGPAQASFIPGR 360
Query: 402 QSSDNIIIAQEVFHSMRYLKRKKGWIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDL 461
S DNI++ QE HSMR K +KGW+ +K+DLEKAYDR+ W FL +TL GL +
Sbjct: 361 LSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKR 420
Query: 462 ILDCVSLSSFQVLFNGSKTE 481
I++CV+ +L+NG KT+
Sbjct: 421 IMECVAGPEMSLLWNGEKTD 440
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 280 bits (717), Expect = 2e-73
Identities = 168/526 (31%), Positives = 273/526 (50%), Gaps = 50/526 (9%)
Query: 1 FLVSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMG 60
F +S YG P S R+ LW++L+R++A+ PW++ GDFN LN +K GG ++ ++
Sbjct: 461 FYLSCIYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQ 520
Query: 61 KFRDCLDDCYLSDLGFKGPPFTWEGRGVKERLDWALG----NDQWLRSFPEASIFHLPQL 116
F + ++ C + DL KG P++W G+ E ++ L N W SFP LP
Sbjct: 521 NFTNMINCCNMKDLKSKGNPYSWVGKRQNETIESCLDRVFINSDWQASFPAFETEFLPIA 580
Query: 117 KSDHKPLLLQLSP----------IDIDHSQRPN--------------------------- 139
SDH P+++ ++ D H Q +
Sbjct: 581 GSDHAPVIIDIAEEVCTKRGQFRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCC 640
Query: 140 RQVFGEIGRR-KRHLMRRLEGINSRL----RMQHIPYLEKLQKRLWKEYQTTLIQEELLW 194
RQ + RR K + ++E + R+ R +P+ L RL ++ EEL W
Sbjct: 641 RQELAKWKRRTKTNTAEKIETLKYRVDAAERDHTLPHQTIL--RLRQDLNQAYRDEELYW 698
Query: 195 RQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHL 254
KSR W+ GD+NT FF+ ST +R+ RN+I+A+TD G+ T+ +A ++F L
Sbjct: 699 HLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADL 758
Query: 255 YTSPGTDVLYHVRNAF-PTLPRDTLLEISNPLEADEIKAAVFSMRALKAPGPDGLNTLFF 313
+T+ T + + P + E+ + E++ AVF++ A +APG DG F+
Sbjct: 759 FTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFY 818
Query: 314 QSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKT 373
WD IG+ V ++ + ++N T I LIPKI P +S YR I +C YK
Sbjct: 819 HHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKI 878
Query: 374 LTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKID 432
++K L RLK LGD+IS +Q +F+PG+ SDN+++A E+ HS++ + + G++A+K D
Sbjct: 879 ISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTD 938
Query: 433 LEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGS 478
+ KAYDR+EW+FL+ ++++G + I+ CV+ S++VL NGS
Sbjct: 939 ISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGS 984
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 279 bits (714), Expect = 4e-73
Identities = 171/538 (31%), Positives = 274/538 (50%), Gaps = 63/538 (11%)
Query: 3 VSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKF 62
+SF YG P +R+F W LRR+ PW+ GDFN L + G + M F
Sbjct: 107 ISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHF 166
Query: 63 RDCLDDCYLSDLGFKGPPFTWEGR-----GVKERLDWALGNDQWLRSFPEASIFHLPQLK 117
R CLDDC L DLGF GP FTW + K RLD A+ N ++ R F + + ++
Sbjct: 167 RSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTS 226
Query: 118 SDHKPLLLQLS---------PID------------------IDHSQRPN----------- 139
SDH + + LS PI +++S R +
Sbjct: 227 SDHYAISIDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVW 286
Query: 140 --------------RQVFGEIGRRKRHLMRRLEGINSRLRMQHIPYLEKL-QKRLWKEYQ 184
+ FG + R+ + R+L+ + + EKL +++L + ++
Sbjct: 287 SVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFE 346
Query: 185 TTLIQEELLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLR 244
+EE++ RQ+SRV WL GD+NT FFH RR+ N+I+ L + G ++
Sbjct: 347 ----KEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIK 402
Query: 245 SMAIDFFQHLYTSPGTDVLYHVRNAFPTLPRDTLL-EISNPLEADEIKAAVFSMRALKAP 303
MA F+++L++S D + V +A P D + E+ +EIK A+F M + KAP
Sbjct: 403 RMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAP 462
Query: 304 GPDGLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRL 363
GPDG LF+Q+ W + + ++ + E + D+++VLIPK++ + LS++R
Sbjct: 463 GPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRP 522
Query: 364 IGICNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKRK 423
I +CNV+YK +K LANRLK L D++S Q +F+PGR +D+ ++A E H++R K
Sbjct: 523 ISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNK 582
Query: 424 KGWIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGSKTE 481
+ A+KID+ KAYDR+EW++L L ++G +++ + ++ CVS + V NG T+
Sbjct: 583 NPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTK 640
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 278 bits (712), Expect = 6e-73
Identities = 171/526 (32%), Positives = 267/526 (50%), Gaps = 50/526 (9%)
Query: 1 FLVSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMG 60
F ++ YG P + R LW+ L R+ + PW++ GDFN ++ +K GG +
Sbjct: 99 FYLTCIYGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCL 158
Query: 61 KFRDCLDDCYLSDLGFKGPPFTWEGRGVKE----RLDWALGNDQWLRSFPEASIFHLPQL 116
+FR L+ C L ++ G F+W G E RLD + N W+ FP+A +L ++
Sbjct: 159 EFRQMLNSCGLWEVNHSGYQFSWYGNRNDELVQCRLDRTVANQAWMELFPQAKATYLQKI 218
Query: 117 KSDHKPLLLQLSPID---------------------------IDHSQRPNRQVFGEIGRR 149
SDH PL+ L + S + N + +I
Sbjct: 219 CSDHSPLINNLVGDNWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASC 278
Query: 150 KRHLMR--RLEGINSRLRMQH-----------IPYLEKLQKRLWKEYQTTLIQEELLWRQ 196
+R + + R+ +S +R+Q IP+ + RL KE EE W++
Sbjct: 279 RREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQE 338
Query: 197 KSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLYT 256
KSR+ W+ +GD+NT++FH +T RR +N+I+ L DE G T L +A +F+ L+
Sbjct: 339 KSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFA 398
Query: 257 SPGTDVLYHVR---NAFPTLPRDTLLEISNPLEADEIKAAVFSMRALKAPGPDGLNTLFF 313
S DV Y V N P + + P+ +E++ A FS+ K PGPDG+N +
Sbjct: 399 SE--DVGYTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLY 456
Query: 314 QSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKT 373
Q W+T+G + + +Q + +N T I LIPKI + ++ +R I +CNVIYK
Sbjct: 457 QQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKV 516
Query: 374 LTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSM-RYLKRKKGWIAIKID 432
+ K +ANRLK +L LIS Q +F+ GR SDNI+IA E+ H++ K + +IAIK D
Sbjct: 517 IGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTD 576
Query: 433 LEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGS 478
+ KAYDR+EW FL+ + +G ++ LI++CV +QVL NG+
Sbjct: 577 ISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGT 622
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 276 bits (707), Expect = 2e-72
Identities = 173/530 (32%), Positives = 270/530 (50%), Gaps = 55/530 (10%)
Query: 7 YGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKFRDCL 66
YG P ++ W+ LR + A GE W+ +GDFN L + +K G M +FR L
Sbjct: 553 YGEPRSDKKDLTWKALRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTL 612
Query: 67 DDCYLSDLGFKGPPFTWEGRG------VKERLDWALGNDQWLRSFPEASIFHLPQLKSDH 120
D C LS+LGF G PFTW ++ERLD A+ + W FP + SDH
Sbjct: 613 DCCSLSNLGFTGDPFTWRNNWCVRDGYIRERLDRAVADSDWCCRFPSFRVRKGDPRHSDH 672
Query: 121 KPLLLQLSPIDIDHSQRPNRQVFGEIG-RRKRH-------------------LMRRLEGI 160
P+++ S I + R E G R+ H +M + +
Sbjct: 673 HPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGGKVMDAIREV 732
Query: 161 NSRLRMQHIPYLEKLQKRLWK------------------------EYQTTLIQE--ELLW 194
+ L +L L+KR+ K +Y+ ++E EL W
Sbjct: 733 AANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYW 792
Query: 195 RQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHL 254
RQ++ WL GD+NT+FFH R+KRNKI+ L + G +TD S+ +F++ L
Sbjct: 793 RQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQL 852
Query: 255 YTSPGTDVLYHVRNAFPTLPRDTLL-EISNPLEADEIKAAVFSMRALKAP-GPDGLNTLF 312
+T+ L + P T+ E+ + +EIK A+ S+ LKAP G DG+ LF
Sbjct: 853 FTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALF 912
Query: 313 FQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYK 372
++ W+ +G +V ++D + E NDT++VLIPK+ P + R I +CNV+YK
Sbjct: 913 YKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYK 972
Query: 373 TLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKI 431
+K LANRLK +L ++ISP Q +F+P R +DNI++A E+ H ++ +R G+ A+K
Sbjct: 973 IASKVLANRLKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQ 1032
Query: 432 DLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGSKTE 481
+ KAYDR+EW FL+ +L++G DRN+ +++ CV+ ++++ NG TE
Sbjct: 1033 GMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTE 1082
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 271 bits (692), Expect = 1e-70
Identities = 185/569 (32%), Positives = 276/569 (47%), Gaps = 56/569 (9%)
Query: 1 FLVSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMG 60
F +S YG P S R+ LWQ L I+ N W+++GDFN L+ +K GG
Sbjct: 480 FYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFR 539
Query: 61 KFRDCLDDCYLSDLGFKGPPFTWEGRG----VKERLDWALGNDQWLRSFPEASIFHLPQL 116
FR+ + C + D+ KG F+W G VK LD N W +FP A I L
Sbjct: 540 NFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCCLDRVFINSAWTATFPYAEIEFLDFT 599
Query: 117 KSDHKPLLLQLSP---------------IDI-------DHSQRPNRQV----FGEIGRRK 150
SDHKP+L+ + IDI S R NR E
Sbjct: 600 GSDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSC 659
Query: 151 RHLMRRLEGINSRLRMQHIPYLE-----------KLQKRLWKEYQTTLIQ----EELLWR 195
R M RL+ ++ Q I L+ ++ ++L + Q +L + EE+ W+
Sbjct: 660 RQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWK 719
Query: 196 QKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLY 255
QKSR W+ GD+NT +FH T R +N++ + D+ G T + + A DFF +++
Sbjct: 720 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIF 779
Query: 256 TSPGTDVLYHVRNAFPTLPRDTL-LEISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQ 314
++ G V F + +T+ L+++ EI A+ + KAPGPDGL F++
Sbjct: 780 STNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYK 839
Query: 315 SQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTL 374
+ WD +G V+ ++ + +N T I +IPKI P LS YR I +CNV+YK +
Sbjct: 840 NCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVI 899
Query: 375 TKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDL 433
+K L NRLK L ++S +Q +FIPGR +DN++IA EV HS++ KR K ++A+K D+
Sbjct: 900 SKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDV 959
Query: 434 EKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGSK----TEFPSFQGHP 489
KAYDR+EW FL+ T+ G + I+ V + VL NGS T +
Sbjct: 960 SKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGD 1019
Query: 490 PR*PII-----PIFVRSLHGAASSSDSKG 513
P P + I ++G ASS D +G
Sbjct: 1020 PLSPYLFILCGDILSHLINGRASSGDLRG 1048
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 269 bits (687), Expect = 5e-70
Identities = 184/569 (32%), Positives = 275/569 (47%), Gaps = 56/569 (9%)
Query: 1 FLVSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMG 60
F +S YG P S R+ LWQ L I+ N W+++GDFN L+ +K GG
Sbjct: 254 FYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFR 313
Query: 61 KFRDCLDDCYLSDLGFKGPPFTWEGRG----VKERLDWALGNDQWLRSFPEASIFHLPQL 116
FR+ + C + D+ KG F+W G VK LD N W +FP A L
Sbjct: 314 NFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCCLDRVFINSAWTATFPYAETEFLDFT 373
Query: 117 KSDHKPLLLQLSP---------------IDI-------DHSQRPNRQV----FGEIGRRK 150
SDHKP+L+ + IDI S R NR E
Sbjct: 374 GSDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSC 433
Query: 151 RHLMRRLEGINSRLRMQHIPYLE-----------KLQKRLWKEYQTTLIQ----EELLWR 195
R M RL+ ++ Q I L+ ++ ++L + Q +L + EE+ W+
Sbjct: 434 RQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWK 493
Query: 196 QKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLY 255
QKSR W+ GD+NT +FH T R +N++ + D+ G T + + A DFF +++
Sbjct: 494 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIF 553
Query: 256 TSPGTDVLYHVRNAFPTLPRDTL-LEISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQ 314
++ G V F + +T+ L+++ EI A+ + KAPGPDGL F++
Sbjct: 554 STNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYK 613
Query: 315 SQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTL 374
+ WD +G V+ ++ + +N T I +IPKI P LS YR I +CNV+YK +
Sbjct: 614 NCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVI 673
Query: 375 TKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDL 433
+K L NRLK L ++S +Q +FIPGR +DN++IA EV HS++ KR K ++A+K D+
Sbjct: 674 SKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDV 733
Query: 434 EKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGSK----TEFPSFQGHP 489
KAYDR+EW FL+ T+ G + I+ V + VL NGS T +
Sbjct: 734 SKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGD 793
Query: 490 PR*PII-----PIFVRSLHGAASSSDSKG 513
P P + I ++G ASS D +G
Sbjct: 794 PLSPYLFILCGDILSHLINGRASSGDLRG 822
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 257 bits (656), Expect = 2e-66
Identities = 167/524 (31%), Positives = 256/524 (47%), Gaps = 47/524 (8%)
Query: 1 FLVSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMG 60
F +S YG P S R+ LW ++ +PW+++GDFN L+ +K GG +
Sbjct: 460 FYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFR 519
Query: 61 KFRDCLDDCYLSDLGFKGPPFTWEGRG----VKERLDWALGNDQWLRSFPEASIFHLPQL 116
FR+ + C L D+ G F+W G VK LD A N + FP A + L
Sbjct: 520 GFRNMVSTCDLKDIRSIGDRFSWVGERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFT 579
Query: 117 KSDHKPLLLQLS--------PIDIDHS--QRPNRQVFGEIGRRK------RHL------- 153
SDHKPL L L P D + P+ + + + G K +HL
Sbjct: 580 GSDHKPLFLSLEKTETRKMRPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTC 639
Query: 154 ------MRRLEGINSRLRMQHIPY--------LEKLQKRLWKEYQTTLI----QEELLWR 195
++ +NSR+R+ + + + ++R Q L EE W+
Sbjct: 640 RQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQ 699
Query: 196 QKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLY 255
QKSR W+ GD+NT FFH T R N++ + DE G+ + A +FF +Y
Sbjct: 700 QKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY 759
Query: 256 TSPGTDV-LYHVRNAFPTLPRDTLLEISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQ 314
S G V + P + +++ L EI A+ + KAPGPDGL F++
Sbjct: 760 ESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYK 819
Query: 315 SQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTL 374
S W+ +G V++ ++ + + +N T I +IPKI P LS YR I +CNV+YK +
Sbjct: 820 SCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKII 879
Query: 375 TKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDL 433
+K L RLKG L ++S +Q +FIPGR +DN++IA E+ HS++ KR + ++A+K D+
Sbjct: 880 SKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDV 939
Query: 434 EKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNG 477
KAYDR+EW+FL+ T+ G + I+ V ++ VL NG
Sbjct: 940 SKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNG 983
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 257 bits (656), Expect = 2e-66
Identities = 167/524 (31%), Positives = 256/524 (47%), Gaps = 47/524 (8%)
Query: 1 FLVSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMG 60
F +S YG P S R+ LW ++ +PW+++GDFN L+ +K GG +
Sbjct: 480 FYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFR 539
Query: 61 KFRDCLDDCYLSDLGFKGPPFTWEGRG----VKERLDWALGNDQWLRSFPEASIFHLPQL 116
FR+ + C L D+ G F+W G VK LD A N + FP A + L
Sbjct: 540 GFRNMVSTCDLKDIRSIGDRFSWVGERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFT 599
Query: 117 KSDHKPLLLQLS--------PIDIDHS--QRPNRQVFGEIGRRK------RHL------- 153
SDHKPL L L P D + P+ + + + G K +HL
Sbjct: 600 GSDHKPLFLSLEKTETRKMRPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTC 659
Query: 154 ------MRRLEGINSRLRMQHIPY--------LEKLQKRLWKEYQTTLI----QEELLWR 195
++ +NSR+R+ + + + ++R Q L EE W+
Sbjct: 660 RQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQ 719
Query: 196 QKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLY 255
QKSR W+ GD+NT FFH T R N++ + DE G+ + A +FF +Y
Sbjct: 720 QKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY 779
Query: 256 TSPGTDV-LYHVRNAFPTLPRDTLLEISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQ 314
S G V + P + +++ L EI A+ + KAPGPDGL F++
Sbjct: 780 ESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYK 839
Query: 315 SQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIYKTL 374
S W+ +G V++ ++ + + +N T I +IPKI P LS YR I +CNV+YK +
Sbjct: 840 SCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKII 899
Query: 375 TKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDL 433
+K L RLKG L ++S +Q +FIPGR +DN++IA E+ HS++ KR + ++A+K D+
Sbjct: 900 SKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDV 959
Query: 434 EKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNG 477
KAYDR+EW+FL+ T+ G + I+ V ++ VL NG
Sbjct: 960 SKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNG 1003
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 247 bits (630), Expect = 2e-63
Identities = 166/528 (31%), Positives = 252/528 (47%), Gaps = 60/528 (11%)
Query: 3 VSFTYGSPN-LSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGK 61
V +PN + R+ W ++ + A W++ GDFN L+ +K GG
Sbjct: 44 VEILEAAPNFIDNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLA 103
Query: 62 FRDCLDDCYLSDLGFKGPPFTWEGRG----VKERLDWALGNDQWLRSFPEASIFHLPQLK 117
FR + L D+ G +W G +K RLD ALGN W FP + +L
Sbjct: 104 FRSFVSQNGLWDINHTGNSLSWRGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFEG 163
Query: 118 SDHKPL--------LLQLSPIDIDHSQRPNRQ----------------VFGEIGRRKRHL 153
SDH+PL L + P D R + V +I R ++ +
Sbjct: 164 SDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISRCRQSI 223
Query: 154 MRRLEGINSRLRMQHIPYLEKLQKRL-------------WKEYQTTLIQEELLWRQKSRV 200
++ + NS + L+ L +E + QEEL W+Q SRV
Sbjct: 224 IKWTKEQNSNSAKAIKKAQQALESALSADIPDPSLIGSITQELEAAYRQEELFWKQWSRV 283
Query: 201 AWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFFQHLYTSPGT 260
WLN GD+N +FH +T RR N + + D G + + S +FQ+++T+
Sbjct: 284 QWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNN 343
Query: 261 DVLYHVRNAFPTLP----RDTLLEISNPLEADEIKAAVFSMRALKAPGPDGLNTLFFQSQ 316
L V+ A + + L++IS+ LE IK A+FS+ A KAPGPDG + FF +
Sbjct: 344 SDLQVVQEALSPIISSHCNEELIKISSLLE---IKEALFSISADKAPGPDGFSASFFHAY 400
Query: 317 WDTIGSSVVQ-----FIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGICNVIY 371
WD I + V + F+ C+ +N+T + LIPKI P +S YR I +CNV Y
Sbjct: 401 WDIIEADVSRDIRSFFVDSCLSP-----RLNETHVTLIPKISAPRKVSDYRPIALCNVQY 455
Query: 372 KTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKRKKGW-IAIK 430
K + K L RL+ L +LIS +Q +F+PGR +DN++I E+ H +R KK +AIK
Sbjct: 456 KIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIK 515
Query: 431 IDLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNGS 478
D+ KAYDR++W+FL++ L+ +G + ++ CV S+ L NGS
Sbjct: 516 TDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGS 563
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411644|pir||C84530 hypothetical protein
At2g15540 [imported] - Arabidopsis thaliana
Length = 1225
Score = 234 bits (598), Expect = 1e-59
Identities = 153/501 (30%), Positives = 255/501 (50%), Gaps = 49/501 (9%)
Query: 3 VSFTYGSPNLSIRNFLWQELRRIAANTGEPWVVMGDFNTYLNAPDKWGGDPPNLLAMGKF 62
++F YG P + R +W+ L RI EPW ++GDFN + +K GG + + F
Sbjct: 101 ITFVYGDPVVQYRELVWKRLTRIGIVRSEPWFMIGDFNEIIGNHEKRGGKKRSESSFLPF 160
Query: 63 RDCLDDCYLSDLGFKGPPFTWEGRG------------VKERLDWALGNDQWLRSFPEASI 110
+++C + D G F+W G+ +K RLD A+GN++W + ++
Sbjct: 161 CCMIENCGMIDFPSTGSLFSWVGKRSCGVAGRKRRDLIKCRLDRAMGNEEWHSIYSHTNV 220
Query: 111 FHLPQLKSDHKPLLLQLSPIDIDHSQRPNRQ-VFGEIGRRKRHLMRRL-EGINSRLRMQH 168
+L SDHKPLL + + RP + +F + K + EG R +
Sbjct: 221 EYLQHRGSDHKPLLASIQ----NKPYRPYKHFIFDKRWINKPGFKESVQEGWAFPSRGEG 276
Query: 169 IPYLEKLQK-----RLWKEYQTTLIQEELLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKR 223
+P+ +K++ +WK+ T E+L+ S++ L + D+N F T ++ K
Sbjct: 277 VPFFQKIKNCRQTISIWKKSNKTNT-EKLILELHSQLD-LAYEDEN---FSTEDLLALKW 331
Query: 224 NKIEALTDEHGVSVTDPITLRSMAIDFFQHLYTSPGTDVLYHVRNAFPTLPRDTLLE-IS 282
+A DE + + V P L + + + ++
Sbjct: 332 KLCQAYRDE-------------------EIFWKLKNPQVFDSALQEVPVLITEEMNKSLT 372
Query: 283 NPLEADEIKAAVFSMRALKAPGPDGLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVN 342
+ +E+K A+FS+ KAPGPDG+ F+Q WD G +++ +Q+ +N
Sbjct: 373 KVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLN 432
Query: 343 DTLIVLIPKIDRPNLLSQYRLIGICNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQ 402
+T I LIPK +RP ++++R I +CNV YK ++K L++RLK +L +LIS Q +F+ R
Sbjct: 433 ETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVAERL 492
Query: 403 SSDNIIIAQEVFHSMRYLKR-KKGWIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDL 461
+DNI+IAQE FH++R KK ++AIK D+ KAYDR+EWSFL+ +L++G + + D
Sbjct: 493 ITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDW 552
Query: 462 ILDCVSLSSFQVLFNGSKTEF 482
I+ C+S S+++L NGS F
Sbjct: 553 IIFCISSVSYKILLNGSPKGF 573
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 216 bits (550), Expect = 4e-54
Identities = 120/311 (38%), Positives = 182/311 (57%), Gaps = 12/311 (3%)
Query: 172 LEKLQKRLWKEYQTTLIQEELLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTD 231
+ +L RL + Y+ EE W QKSR W+ GD N++FFH T RR RN+I L D
Sbjct: 102 ITELTLRLKEAYR----DEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHD 157
Query: 232 EHGVSVTDPITLRSMAIDFFQHLYTSPGTDVLYHVRNAFPTLPRDTLLEISNPLEAD--- 288
E+G+ + ++++A+ +FQ+L+T+ V L D I++ L AD
Sbjct: 158 ENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQVLITD---RINDLLTADATE 214
Query: 289 -EIKAAVFSMRALKAPGPDGLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIV 347
E++AA+F + KAPGPDG+ LFFQ W I S ++ + +Q + +N T I
Sbjct: 215 CEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNIC 274
Query: 348 LIPKIDRPNLLSQYRLIGICNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNI 407
LIPK +RP +++ R I +CNV YK ++K L RLK VL +LIS Q +F+ GR SDNI
Sbjct: 275 LIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNI 334
Query: 408 IIAQEVFHSMRYLKR-KKGWIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCV 466
+IAQE+FH +R K ++AIK D+ KAYD++EW+F++ L ++G + I+ C+
Sbjct: 335 LIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCI 394
Query: 467 SLSSFQVLFNG 477
+ ++VL NG
Sbjct: 395 TTVQYKVLING 405
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 215 bits (548), Expect = 7e-54
Identities = 113/292 (38%), Positives = 173/292 (58%), Gaps = 2/292 (0%)
Query: 188 IQEELLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMA 247
I EE W QKSR W+ GD N+++FH T RR RN+I L DE+G + ++ +A
Sbjct: 180 IDEEQYWYQKSRSLWMKVGDNNSKYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIA 239
Query: 248 IDFFQHLYTSPGTDVLYHVRNAFPTLPRDTLLE-ISNPLEADEIKAAVFSMRALKAPGPD 306
+ +F+ L+ + + TL D + + ++ P DE++AA+F M KAPGPD
Sbjct: 240 VSYFETLFNKSNPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPD 299
Query: 307 GLNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGI 366
G+ LFFQ W TI ++ + +Q +++N T I LIPK +RP +++ R I +
Sbjct: 300 GMTALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISL 359
Query: 367 CNVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKRKKG- 425
CNV YK ++K L RLK +L LIS +F+ GR SDNI+IAQE+FH +R KG
Sbjct: 360 CNVGYKIISKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGK 419
Query: 426 WIAIKIDLEKAYDRLEWSFLKDTLLEVGLDRNFCDLILDCVSLSSFQVLFNG 477
++AIK D+ KAYDR+EW+F+++ L ++G + I+ C++ ++VL NG
Sbjct: 420 FMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNG 471
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 215 bits (547), Expect = 9e-54
Identities = 115/315 (36%), Positives = 184/315 (57%), Gaps = 20/315 (6%)
Query: 132 IDHSQRPNRQVFGEIGRRKRHLMRRLEGINSRLRMQHIPYLEKLQKRLWKEYQTTLIQEE 191
+D ++ NR VFG++ ++K LMR ++ + L + + + ++ L K +
Sbjct: 43 LDRLKKWNRDVFGDVKKKKEELMREIQVVQDALDVHQSDDMLRKEEDLIKAFD------- 95
Query: 192 LLWRQKSRVAWLNHGDKNTRFFHTSTMVRRKRNKIEALTDEHGVSVTDPITLRSMAIDFF 251
KSR W+ GD+NT +FHT+T++RR++N++E L +E G + D L ++A+ ++
Sbjct: 96 -----KSREKWIALGDRNTNYFHTTTIIRRRQNRVERLHNEEGTWIFDAKELEALAVQYY 150
Query: 252 QHLYTSPGTDVLYHV----RNAFPTLPRDTLLEISNPLEADEIKAAVFSMRALKAPGPDG 307
Q LY+ DVL V ++ L R+ +L ++ P A E++ A+ SM KAPGPDG
Sbjct: 151 QRLYSMD--DVLQVVNPLPQDGLERLTREEVLSLNKPFLATEVEVAIRSMGKYKAPGPDG 208
Query: 308 LNTLFFQSQWDTIGSSVVQFIQDCIQRPEKIREVNDTLIVLIPKIDRPNLLSQYRLIGIC 367
+F+QS W+ +G+SV++F D + ND L+VLIPK+ +P ++Q+R I +C
Sbjct: 209 YQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRPISLC 268
Query: 368 NVIYKTLTKALANRLKGVLGDLISPNQCSFIPGRQSSDNIIIAQEVFHSMRYLKRKKGWI 427
N I+K +TK + RLK V+G LI P+Q SFIPGR S DNI++ QE HS+ K +K +
Sbjct: 269 NAIFKMITKMMVLRLKKVIGKLIGPSQSSFIPGRLSLDNIVVVQEAVHSLNRKKGRKERL 328
Query: 428 AIKIDLEKAYDRLEW 442
ID +A EW
Sbjct: 329 CHMID--RAVAVKEW 341
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.343 0.152 0.539
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,107,363,150
Number of Sequences: 2540612
Number of extensions: 88669241
Number of successful extensions: 224185
Number of sequences better than 10.0: 892
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 221865
Number of HSP's gapped (non-prelim): 1333
length of query: 1248
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1108
effective length of database: 507,674,714
effective search space: 562503583112
effective search space used: 562503583112
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0037a.3