BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0037a.10
(168 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM76973.1| reduced vernalization response 1 [Arabidopsis tha... 37 0.21
gb|AAQ55453.1| reduced vernalization response 1 [Brassica rapa] 35 1.0
gb|EAL04145.1| potential oligopeptide transporter [Candida albic... 35 1.0
gb|AAR92199.1| reduced vernalization response 1 [Brassica rapa] 34 1.4
gb|AAQ89626.1| At4g01580 [Arabidopsis thaliana] gi|7268201|emb|C... 33 4.0
ref|NP_522016.1| PROBABLE RHS-RELATED PROTEIN [Ralstonia solanac... 33 4.0
emb|CAH97121.1| conserved hypothetical protein [Plasmodium berghei] 33 4.0
emb|CAI74120.1| hypothetical protein [Theileria annulata] 32 5.2
ref|XP_641257.1| hypothetical protein DDB0206393 [Dictyostelium ... 32 5.2
emb|CAF96534.1| unnamed protein product [Tetraodon nigroviridis] 32 5.2
gb|EAK89407.1| cation-transporting ATpase 2 with 8 transmembrane... 32 6.8
ref|XP_665988.1| membrane ATPase [Cryptosporidium hominis] gi|54... 32 6.8
gb|AAT01743.1| polyprotein [Foot-and-mouth disease virus Asia 1]... 32 6.8
ref|XP_541840.1| PREDICTED: similar to calcium channel, voltage-... 32 8.8
ref|XP_547521.1| PREDICTED: similar to immunoglobulin superfamil... 32 8.8
ref|XP_395342.2| PREDICTED: hypothetical protein XP_395342, part... 32 8.8
ref|XP_394775.2| PREDICTED: similar to ENSANGP00000022143 [Apis ... 32 8.8
>gb|AAM76973.1| reduced vernalization response 1 [Arabidopsis thaliana]
gi|21734794|gb|AAM76972.1| reduced vernalization
response 1 [Arabidopsis thaliana]
gi|30685150|ref|NP_188529.2| transcriptional factor B3
family protein [Arabidopsis thaliana]
Length = 341
Score = 37.0 bits (84), Expect = 0.21
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 4 VSRKFAVEFAHDLGLQWKLVDPFGSVHLVSYESNSEEPYLFEGLLEIRKFYSLQGMNWFL 63
V KF +F +L + L P G V V + + +G E YS++ +
Sbjct: 22 VPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLI 81
Query: 64 LKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSH 102
+Y+G S F ++I+N S E+ Y + L S H+H
Sbjct: 82 FRYEGNSAFSVYIFNLSHSEINYHSTGLMDS----AHNH 116
>gb|AAQ55453.1| reduced vernalization response 1 [Brassica rapa]
Length = 329
Score = 34.7 bits (78), Expect = 1.0
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 4 VSRKFAVEFAHDLGLQWKLVDPFGSVHLVSYES--NSEEPYLFEGLLEIRKFYSLQGMNW 61
V KF +F +L + L P G V V N+ + + +G E YS++
Sbjct: 22 VPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNNNKIWFQDGWQEFVDRYSIRIGYL 81
Query: 62 FLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTH 100
+ +Y+G S F + IYN E+ Y + L S + H
Sbjct: 82 LIFRYEGNSAFSVCIYNLPQSEINYHSTGLMDSASHNNH 120
>gb|EAL04145.1| potential oligopeptide transporter [Candida albicans SC5314]
gi|46444717|gb|EAL03990.1| potential oligopeptide
transporter [Candida albicans SC5314]
Length = 945
Score = 34.7 bits (78), Expect = 1.0
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 32 VSYESNSEEPYLFEGL--LEIRKFYSLQGMNW-FLLKYQGCSNFDLFIYNDSIEEVC-YL 87
+ Y ++ PY + +++ +FY L+ +NW F + + + F + +++VC Y
Sbjct: 291 IIYSCSASTPYSINNIFVMKLDRFYGLKWVNWIFQILFTVSTQLLGFSFAMIMKKVCVYP 350
Query: 88 TRSLPPSITPTTHSHTSFHGECTTGSKSVTEEWIFYPCFF 127
++++ P+I PT + + + + S+ W P F
Sbjct: 351 SKAIWPTILPTIALNRALMNQDNASNNSIVHGWKISPYSF 390
>gb|AAR92199.1| reduced vernalization response 1 [Brassica rapa]
Length = 329
Score = 34.3 bits (77), Expect = 1.4
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 4 VSRKFAVEFAHDLGLQWKLVDPFGSVHLVSYES--NSEEPYLFEGLLEIRKFYSLQGMNW 61
V KF F +L + L P G V V N+ + + +G E YS++
Sbjct: 22 VPDKFVSRFKDELSVAVALTVPDGHVWRVGLRKADNNNKIWFQDGWQEFVDRYSIRIGYL 81
Query: 62 FLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTH 100
+ +Y+G S F + IYN E+ Y + L S + H
Sbjct: 82 LIFRYEGNSAFSVCIYNLPQSEINYHSTGLMDSASHNNH 120
>gb|AAQ89626.1| At4g01580 [Arabidopsis thaliana] gi|7268201|emb|CAB77728.1|
hypothetical protein [Arabidopsis thaliana]
gi|15234250|ref|NP_192068.1| transcriptional factor B3
family protein [Arabidopsis thaliana]
gi|3859591|gb|AAC72857.1| T15B16.18 gene product
[Arabidopsis thaliana] gi|51968808|dbj|BAD43096.1|
hypothetical protein [Arabidopsis thaliana]
gi|7487022|pir||T02015 hypothetical protein T15B16.18 -
Arabidopsis thaliana
Length = 190
Score = 32.7 bits (73), Expect = 4.0
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 22 LVDPFGSVHLVSYESNSEEPYLFEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSI 81
LV P G + + EE + EG E + +S++ ++ L +Y+ S+F + I+N S
Sbjct: 64 LVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASA 123
Query: 82 EEVCY 86
E Y
Sbjct: 124 CETNY 128
>ref|NP_522016.1| PROBABLE RHS-RELATED PROTEIN [Ralstonia solanacearum GMI1000]
gi|17430924|emb|CAD17606.1| PROBABLE RHS-RELATED PROTEIN
[Ralstonia solanacearum]
Length = 881
Score = 32.7 bits (73), Expect = 4.0
Identities = 18/59 (30%), Positives = 25/59 (41%)
Query: 91 LPPSITPTTHSHTSFHGECTTGSKSVTEEWIFYPCFFTTRLSPNQVSSSQLVMNQFCYV 149
L S PT T+++G+ S T Y C PNQ S+SQL + Y+
Sbjct: 84 LQASSPPTASQVTTYYGDFACPSSVTTNGQAVYRCSHVQYTFPNQPSASQLAATRSAYI 142
>emb|CAH97121.1| conserved hypothetical protein [Plasmodium berghei]
Length = 502
Score = 32.7 bits (73), Expect = 4.0
Identities = 21/96 (21%), Positives = 41/96 (41%), Gaps = 6/96 (6%)
Query: 32 VSYESNSEEPYLFEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRSL 91
+ YE N ++ +FE + ++K Y ++ +N +L ++ C F YN + YL + +
Sbjct: 236 IYYEFNGKKYVVFENMYNLKKVYKIKYINLCILFHRYC----FFFYNYNPLIFSYLFKHI 291
Query: 92 PPSITPTTHSHTSFHGECTTGSKSVTEEWIFYPCFF 127
H C K T + ++ CF+
Sbjct: 292 YCMCIECVQKHLIIGNSCI--KKDKTPDKNYHDCFY 325
>emb|CAI74120.1| hypothetical protein [Theileria annulata]
Length = 555
Score = 32.3 bits (72), Expect = 5.2
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 64 LKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSHTSFHGECTTGSKSVTEE 119
L+Y +N+ I N I+ T+S SIT TT++ T+ G T G SVTEE
Sbjct: 296 LEYNINNNYVTLIQNHLIK-----TQSFLNSITGTTNNLTTTEGTSTVGPSSVTEE 346
>ref|XP_641257.1| hypothetical protein DDB0206393 [Dictyostelium discoideum]
gi|60469295|gb|EAL67289.1| hypothetical protein
DDB0206393 [Dictyostelium discoideum]
Length = 1267
Score = 32.3 bits (72), Expect = 5.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 59 MNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSHTSFHGECTTGSKSVT 117
+N+ + KY GCSN D IE +L ++ PP++ S +GE T +++ T
Sbjct: 931 LNYVVNKYYGCSNND-----TGIELESHLNQNFPPNMLDAHFSSRIAYGELMTSARNPT 984
>emb|CAF96534.1| unnamed protein product [Tetraodon nigroviridis]
Length = 891
Score = 32.3 bits (72), Expect = 5.2
Identities = 19/78 (24%), Positives = 33/78 (41%)
Query: 44 FEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSHT 103
+ G LE+ K + QG N QG + + ++ + YL R + + +T
Sbjct: 28 YHGHLEVVKLLTSQGANVKCKDKQGYTPLHAAAVSGQLDVIKYLLRVVSEIDDSNAYGNT 87
Query: 104 SFHGECTTGSKSVTEEWI 121
+ H C TG +V E +
Sbjct: 88 ALHMACYTGQDTVANELV 105
>gb|EAK89407.1| cation-transporting ATpase 2 with 8 transmembrane domains
[Cryptosporidium parvum] gi|66359870|ref|XP_627113.1|
cation-transporting ATpase 2 [Cryptosporidium parvum]
Length = 1491
Score = 32.0 bits (71), Expect = 6.8
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 43 LFEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSH 102
+F + EI + YSL+ +NW + C ++N E+ YL S P P ++H
Sbjct: 978 VFNSIQEILEKYSLENINWVITGQ--CLRLLHKLHNTF--ELEYLDLSNDPERPPNHNNH 1033
Query: 103 T----SFHGECTTGSKSVTEEWIFYPCFFTTRLSPNQVSSSQL 141
T +++ + + + PC+ T R + + SS++L
Sbjct: 1034 TFSFFNYNKKAERFYRQIRNNHQSLPCWMTLRSNTRESSSNRL 1076
>ref|XP_665988.1| membrane ATPase [Cryptosporidium hominis] gi|54656876|gb|EAL35756.1|
membrane ATPase [Cryptosporidium hominis]
Length = 1491
Score = 32.0 bits (71), Expect = 6.8
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 43 LFEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSH 102
+F + EI + YSL+ +NW + C ++N E+ YL S P P ++H
Sbjct: 978 VFNSIQEILEKYSLENINWVITGQ--CLRLLHKLHNTF--ELEYLDLSNDPERPPNHNNH 1033
Query: 103 T----SFHGECTTGSKSVTEEWIFYPCFFTTRLSPNQVSSSQL 141
T +++ + + + PC+ T R + + SS++L
Sbjct: 1034 TFSFLNYNKKAERFYRQIRNNHQSLPCWMTLRSNTRESSSNRL 1076
>gb|AAT01743.1| polyprotein [Foot-and-mouth disease virus Asia 1]
gi|46810855|gb|AAT01742.1| polyprotein [Foot-and-mouth
disease virus Asia 1] gi|46810853|gb|AAT01741.1|
polyprotein [Foot-and-mouth disease virus Asia 1]
Length = 2329
Score = 32.0 bits (71), Expect = 6.8
Identities = 27/115 (23%), Positives = 45/115 (38%), Gaps = 5/115 (4%)
Query: 56 LQGMNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSITPTT---HSHTSFHGECTTG 112
L G+ + +Y G N + + Y+ +PP +TP T H+ H E TG
Sbjct: 594 LAGLAQYYTQYSGTMNVHFMFTGPTDAKARYMVAYVPPGMTPPTDPEHAAHCIHSEWDTG 653
Query: 113 SKSVTEEWIFYPCFFTTRLSPNQVSSSQLVMNQFCYVLMTNESVYG--IFVSLNA 165
S I Y + + V+ + V C +T+ G + VS++A
Sbjct: 654 LNSKFTFSIPYLSAADYAYTASDVAETTSVQGWVCIYQITHGKAEGDALVVSVSA 708
>ref|XP_541840.1| PREDICTED: similar to calcium channel, voltage-dependent, L type,
alpha 1D subunit [Canis familiaris]
Length = 2851
Score = 31.6 bits (70), Expect = 8.8
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 58 GMNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRS------LPPSITPTTHSHTSFHGECTT 111
G +W + +G + F+ +D VCY +R LPP TPT+H +SF+ EC
Sbjct: 2534 GSSWDFERPRGYHHPQGFLEDDD-SPVCYDSRRSPRRRLLPP--TPTSHRRSSFNFECLR 2590
Query: 112 GSKSVTEEWIFYPCFFTTRLSPNQVSSSQLVM 143
+S EE P F P + Q+V+
Sbjct: 2591 -RQSSQEEVSLSPTFPHRTALPLHLMQQQVVV 2621
>ref|XP_547521.1| PREDICTED: similar to immunoglobulin superfamily receptor
translocation associated protein 2c [Canis familiaris]
Length = 3414
Score = 31.6 bits (70), Expect = 8.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 70 SNFDLFIYNDSIEEVCYLTRSLPPSITPTTHSHTSFHG 107
S +DL + D ++C L S P + T T+H H SFHG
Sbjct: 3345 SPWDLLL--DLAMDICPLWTSAPSTDTSTSHRHLSFHG 3380
>ref|XP_395342.2| PREDICTED: hypothetical protein XP_395342, partial [Apis mellifera]
Length = 499
Score = 31.6 bits (70), Expect = 8.8
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 6/78 (7%)
Query: 52 KFYSLQGMNWFLLKYQGCSNFDLFIYND-----SIEEVCYLT-RSLPPSITPTTHSHTSF 105
KFY + L+ + S+ + I+ D ++E C +T ++ PS+ + T
Sbjct: 52 KFYDIGASFDHLIWFLQISDIHISIFQDPFRITELKEFCNITVGTIKPSVVLASGDLTDA 111
Query: 106 HGECTTGSKSVTEEWIFY 123
+ GSK + EEW +Y
Sbjct: 112 KAKDKMGSKQILEEWQYY 129
>ref|XP_394775.2| PREDICTED: similar to ENSANGP00000022143 [Apis mellifera]
Length = 5454
Score = 31.6 bits (70), Expect = 8.8
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 37 NSEEPYLFEGLLEIRKFYSLQGMNWFLLKYQGCSNFDLFIYNDSIEEVCYLTRSLPPSIT 96
N +EP +E LL+ YSL + + S + ++ND++E + + R+L
Sbjct: 3725 NEDEPRFYEDLLDYEAVYSLFLEIYEDYNERNVSKLHMVLFNDALEHLTRIHRAL----- 3779
Query: 97 PTTHSHTSFHGECTTGSKSVTEEWIFYPCFFTTRLS----PNQVSSSQLVMNQFCYVLMT 152
H G +G KSV + + F T ++S N+ + + + N + V +
Sbjct: 3780 RMHKGHVLVIGIGGSGKKSVIKLAAYAAGFRTFQISLSRGYNEPAFREDMKNLYNMVGVD 3839
Query: 153 NESVYGIFVS 162
N+ + +F S
Sbjct: 3840 NKKIVFLFTS 3849
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,917,256
Number of Sequences: 2540612
Number of extensions: 11050713
Number of successful extensions: 24143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 24136
Number of HSP's gapped (non-prelim): 17
length of query: 168
length of database: 863,360,394
effective HSP length: 118
effective length of query: 50
effective length of database: 563,568,178
effective search space: 28178408900
effective search space used: 28178408900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0037a.10