BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0036c.6
(70 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC05451.1| putative transcriptional co-activator (KIWI) [Ar... 112 2e-24
ref|XP_466184.1| transcriptional coactivator p15 (PC4) family pr... 100 1e-20
emb|CAC05450.1| transcriptional co-activator-like protein [Arabi... 82 3e-15
dbj|BAB41214.1| putative transcriptional coactivator [Brassica r... 72 3e-12
emb|CAB81193.1| putative protein [Arabidopsis thaliana] gi|45393... 71 8e-12
dbj|BAD36841.1| general transcriptional coactivator [Oryzias lat... 69 3e-11
gb|EAL93044.1| RNA polymerase II transcriptional coactivator, pu... 69 4e-11
emb|CAF89779.1| unnamed protein product [Tetraodon nigroviridis] 67 9e-11
ref|NP_916536.1| P0684B02.23 [Oryza sativa (japonica cultivar-gr... 67 1e-10
gb|EAA58315.1| hypothetical protein AN5806.2 [Aspergillus nidula... 67 2e-10
ref|NP_001018376.1| hypothetical protein LOC553561 [Danio rerio]... 67 2e-10
gb|AAH88346.1| RNA polymerase II transcriptional coactivator [Ra... 66 2e-10
ref|NP_035424.1| RNA polymerase II transcriptional coactivator [... 66 2e-10
gb|AAT72821.1| activated RNA polymerase II transcription cofacto... 66 2e-10
ref|NP_001008479.1| similar to Activated RNA polymerase II trans... 65 4e-10
ref|XP_344313.1| PREDICTED: similar to RNA polymerase II transcr... 65 5e-10
emb|CAG80130.1| unnamed protein product [Yarrowia lipolytica CLI... 65 5e-10
gb|EAL33676.1| GA21044-PA [Drosophila pseudoobscura] 64 1e-09
pir||A23063 pancreatic B-cell tumor protein - rat (fragment) gi|... 63 2e-09
gb|EAL23468.1| hypothetical protein CNBA1170 [Cryptococcus neofo... 63 2e-09
>emb|CAC05451.1| putative transcriptional co-activator (KIWI) [Arabidopsis thaliana]
gi|28466805|gb|AAO44011.1| At5g09250 [Arabidopsis
thaliana] gi|15242365|ref|NP_196487.1| transcriptional
coactivator p15 (PC4) family protein [Arabidopsis
thaliana] gi|2997684|gb|AAC08574.1| putative
transcriptional co-activator [Arabidopsis thaliana]
gi|25348085|pir||T52113 probable transcription
co-activator KIWI [imported] - Arabidopsis thaliana
gi|37079587|sp|O65154|KIWI_ARATH RNA polymerase II
transcriptional coactivator KIWI
Length = 107
Score = 112 bits (281), Expect = 2e-24
Identities = 50/67 (74%), Positives = 60/67 (88%)
Query: 3 DSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEE 62
D IVVC ISKNRRVSVRNW G+I +DIREFYVKDGK +PGKKGISL++DQWN LRNH E+
Sbjct: 39 DDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAED 98
Query: 63 IDKAVNE 69
I+KA+++
Sbjct: 99 IEKALSD 105
>ref|XP_466184.1| transcriptional coactivator p15 (PC4) family protein-like [Oryza
sativa (japonica cultivar-group)]
gi|50725768|dbj|BAD33299.1| transcriptional coactivator
p15 (PC4) family protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 101
Score = 100 bits (249), Expect = 1e-20
Identities = 44/68 (64%), Positives = 57/68 (83%)
Query: 3 DSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEE 62
D IVV +ISKNRRV+VR W G++VVDIREFY KDGK +PG+KGI L MDQW +LR++I+
Sbjct: 33 DDIVVAQISKNRRVAVRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWKILRDNIKA 92
Query: 63 IDKAVNES 70
ID+A+ E+
Sbjct: 93 IDEAIKEN 100
>emb|CAC05450.1| transcriptional co-activator-like protein [Arabidopsis thaliana]
gi|26450870|dbj|BAC42542.1| putative transcriptional
co-activator [Arabidopsis thaliana]
gi|28416823|gb|AAO42942.1| At5g09240 [Arabidopsis
thaliana] gi|15242363|ref|NP_196486.1| transcriptional
coactivator p15 (PC4) family protein [Arabidopsis
thaliana]
Length = 110
Score = 82.4 bits (202), Expect = 3e-15
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 3 DSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMP--GKKGISLTMDQWNVLRNHI 60
+ I +C + KNRRV VRN GRI + IR+F+VKDG +P K+GISL+++QWN LRNH
Sbjct: 38 EDIFICNLDKNRRVFVRNCNGRIWIAIRQFFVKDGITLPCNSKQGISLSLEQWNDLRNHE 97
Query: 61 EEIDKAVNE 69
E+IDKA++E
Sbjct: 98 EDIDKALSE 106
>dbj|BAB41214.1| putative transcriptional coactivator [Brassica rapa]
Length = 165
Score = 72.4 bits (176), Expect = 3e-12
Identities = 29/69 (42%), Positives = 49/69 (70%)
Query: 1 DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
D +++C +S RRV+++ ++G+ +V IRE+Y KDGK++P KGISLT +QW+ + +I
Sbjct: 92 DDGDLIICRLSDKRRVTIQEFRGKSLVSIREYYKKDGKELPSSKGISLTDEQWSTFKKNI 151
Query: 61 EEIDKAVNE 69
I+ AV +
Sbjct: 152 PAIEAAVKK 160
>emb|CAB81193.1| putative protein [Arabidopsis thaliana] gi|4539366|emb|CAB40060.1|
putative protein [Arabidopsis thaliana]
gi|21554027|gb|AAM63108.1| putative transcriptional
coactivator [Arabidopsis thaliana]
gi|29028806|gb|AAO64782.1| At4g10920 [Arabidopsis
thaliana] gi|2997686|gb|AAC08575.1| putative
transcriptional co-activator [Arabidopsis thaliana]
gi|3513735|gb|AAC33951.1| contains similarity to RNA
polymerase II transcription cofactor p15 [Arabidopsis
thaliana] gi|25456224|pir||T52114 probable transcription
co-activator KELP [imported] - Arabidopsis thaliana
gi|15236980|ref|NP_192830.1| transcriptional coactivator
p15 (PC4) family protein (KELP) [Arabidopsis thaliana]
gi|37079408|sp|O65155|KELP_ARATH RNA polymerase II
transcriptional coactivator KELP
Length = 165
Score = 70.9 bits (172), Expect = 8e-12
Identities = 28/69 (40%), Positives = 49/69 (70%)
Query: 1 DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
D +++C +S RRV+++ ++G+ +V IRE+Y KDGK++P KGISLT +QW+ + ++
Sbjct: 92 DDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNM 151
Query: 61 EEIDKAVNE 69
I+ AV +
Sbjct: 152 PAIENAVKK 160
>dbj|BAD36841.1| general transcriptional coactivator [Oryzias latipes]
Length = 125
Score = 68.9 bits (167), Expect = 3e-11
Identities = 30/63 (47%), Positives = 50/63 (78%), Gaps = 1/63 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G++++DIRE+++ +DG+ PGKKGISL +QWN L++ + EID+A+
Sbjct: 63 QIGKMRYVSVRDFKGKVLIDIREYWMNQDGEMKPGKKGISLNPEQWNQLKDQMSEIDEAI 122
Query: 68 NES 70
+
Sbjct: 123 KRT 125
>gb|EAL93044.1| RNA polymerase II transcriptional coactivator, putative
[Aspergillus fumigatus Af293]
Length = 165
Score = 68.6 bits (166), Expect = 4e-11
Identities = 30/62 (48%), Positives = 51/62 (81%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVN 68
E+SK RRV++ +++G+ +V+IRE+Y KDG+++PGKKGISL +DQ++VL + +I+ A+
Sbjct: 57 ELSKMRRVTISSFRGKTLVNIREYYEKDGQELPGKKGISLPIDQFSVLVTLLPDIEMALK 116
Query: 69 ES 70
E+
Sbjct: 117 ET 118
>emb|CAF89779.1| unnamed protein product [Tetraodon nigroviridis]
Length = 125
Score = 67.4 bits (163), Expect = 9e-11
Identities = 30/62 (48%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYVK-DGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G++++DIRE+++ DG+ PGKKGISL +QWN L++ I +ID A+
Sbjct: 63 QIGKMRYVSVRDFKGKVLIDIREYWMNPDGEMKPGKKGISLNPEQWNQLKDQIADIDDAI 122
Query: 68 NE 69
+
Sbjct: 123 KK 124
>ref|NP_916536.1| P0684B02.23 [Oryza sativa (japonica cultivar-group)]
gi|19571089|dbj|BAB86514.1| transcriptional
coactivator-like [Oryza sativa (japonica
cultivar-group)] gi|13872930|dbj|BAB44036.1|
transcriptional coactivator-like [Oryza sativa (japonica
cultivar-group)]
Length = 184
Score = 67.0 bits (162), Expect = 1e-10
Identities = 27/69 (39%), Positives = 49/69 (70%), Gaps = 1/69 (1%)
Query: 1 DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
D +++C +S RRV+++ ++G+ ++ IRE+Y KDGK++P KGISLT++QW R+ +
Sbjct: 111 DEGDLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELPA-KGISLTVEQWEAFRDSV 169
Query: 61 EEIDKAVNE 69
I+ A+ +
Sbjct: 170 PAIEDAIKK 178
>gb|EAA58315.1| hypothetical protein AN5806.2 [Aspergillus nidulans FGSC A4]
gi|67539272|ref|XP_663410.1| hypothetical protein
AN5806_2 [Aspergillus nidulans FGSC A4]
gi|49096966|ref|XP_409943.1| hypothetical protein
AN5806.2 [Aspergillus nidulans FGSC A4]
Length = 168
Score = 66.6 bits (161), Expect = 2e-10
Identities = 31/69 (44%), Positives = 51/69 (72%)
Query: 1 DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
D + + EISK RRV++ +++G+ +V+IRE+Y KDG+++PGKKGISL +DQ++ L +
Sbjct: 50 DSNGDIYWEISKMRRVTISSFRGKTMVNIREYYEKDGEELPGKKGISLPIDQFSSLVTLL 109
Query: 61 EEIDKAVNE 69
EI+ + E
Sbjct: 110 PEIEIVLQE 118
>ref|NP_001018376.1| hypothetical protein LOC553561 [Danio rerio]
gi|63100558|gb|AAH95096.1| Hypothetical protein
LOC553561 [Danio rerio]
Length = 123
Score = 66.6 bits (161), Expect = 2e-10
Identities = 30/63 (47%), Positives = 48/63 (75%), Gaps = 1/63 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G++++DIRE+++ ++G+ PG+KGISL +QWN L+ I EID AV
Sbjct: 61 QIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISEIDDAV 120
Query: 68 NES 70
+
Sbjct: 121 KRT 123
>gb|AAH88346.1| RNA polymerase II transcriptional coactivator [Rattus norvegicus]
gi|57526804|ref|NP_001009618.1| RNA polymerase II
transcriptional coactivator [Rattus norvegicus]
Length = 127
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/62 (48%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G+I++DIRE+++ +G+ PG+KGISL M+QW+ L+ I +ID AV
Sbjct: 65 QIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAV 124
Query: 68 NE 69
+
Sbjct: 125 RK 126
>ref|NP_035424.1| RNA polymerase II transcriptional coactivator [Mus musculus]
gi|15012118|gb|AAH10967.1| RNA polymerase II
transcriptional coactivator [Mus musculus]
gi|129392|sp|P11031|TCP4_MOUSE Activated RNA polymerase
II transcriptional coactivator p15 precursor (Positive
cofactor 4) (PC4) (p14) (Single-stranded DNA binding
protein p9) gi|26339958|dbj|BAC33642.1| unnamed protein
product [Mus musculus] gi|26339286|dbj|BAC33314.1|
unnamed protein product [Mus musculus]
gi|309120|gb|AAA37317.1| single stranded DNA binding
protein p9 precursor
Length = 127
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/62 (48%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G+I++DIRE+++ +G+ PG+KGISL M+QW+ L+ I +ID AV
Sbjct: 65 QIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAV 124
Query: 68 NE 69
+
Sbjct: 125 RK 126
>gb|AAT72821.1| activated RNA polymerase II transcription cofactor 4 [Homo
sapiens]
Length = 73
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/62 (48%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G+I++DIRE+++ +G+ PG+KGISL M+QW+ L+ I +ID AV
Sbjct: 11 QIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAV 70
Query: 68 NE 69
+
Sbjct: 71 RK 72
>ref|NP_001008479.1| similar to Activated RNA polymerase II transcriptional coactivator
p15 (Positive cofactor 4) (PC4) (p14) [Gallus gallus]
gi|53132176|emb|CAG31880.1| hypothetical protein [Gallus
gallus]
Length = 126
Score = 65.5 bits (158), Expect = 4e-10
Identities = 29/62 (46%), Positives = 48/62 (76%), Gaps = 1/62 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G++++DIRE+++ ++G+ PG+KGISL +QWN L+ I +ID AV
Sbjct: 64 QIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISDIDDAV 123
Query: 68 NE 69
+
Sbjct: 124 RK 125
>ref|XP_344313.1| PREDICTED: similar to RNA polymerase II transcriptional coactivator
[Rattus norvegicus]
Length = 126
Score = 65.1 bits (157), Expect = 5e-10
Identities = 29/66 (43%), Positives = 49/66 (73%), Gaps = 1/66 (1%)
Query: 5 IVVCEISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEI 63
++ +I K R VSVR+++G+I++ IRE+++ DG+ PG+KGISL M+QW+ L+ I ++
Sbjct: 60 MIAFQIGKVRYVSVRDFKGKILIGIREYWMDSDGEMKPGRKGISLNMEQWSQLKEQISDV 119
Query: 64 DKAVNE 69
D AV +
Sbjct: 120 DAAVRK 125
>emb|CAG80130.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50554237|ref|XP_504527.1| hypothetical protein
[Yarrowia lipolytica]
Length = 136
Score = 65.1 bits (157), Expect = 5e-10
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 7 VCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKA 66
V E+ ++RV+VR ++GR ++DIR FY KDGK++PG KGISLT Q+ L ++ I A
Sbjct: 6 VFELGNDKRVTVREFKGRTLIDIRAFYEKDGKKLPGSKGISLTEAQFEELSEQVQSIQDA 65
Query: 67 V 67
V
Sbjct: 66 V 66
>gb|EAL33676.1| GA21044-PA [Drosophila pseudoobscura]
Length = 96
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 10 ISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+ + R+V + ++GR +VDIREFY K+G+ +PGKKGI L++ QW L H +EI KAV
Sbjct: 37 LERMRQVRINEFRGRKMVDIREFYEKNGETLPGKKGICLSILQWKKLLEHADEITKAV 94
>pir||A23063 pancreatic B-cell tumor protein - rat (fragment)
gi|2498735|sp|Q63396|TCP4_RAT Activated RNA polymerase
II transcriptional coactivator p15 (Positive cofactor 4)
(PC4) (p14) gi|205854|gb|AAA41758.1| pR-ET2 encoded
oncodevelopmental protein (putative); putative
Length = 119
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/62 (46%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV-KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAV 67
+I K R VSVR+++G+I++DIRE+++ +G+ P +KGISL M+QW+ L+ I +ID AV
Sbjct: 57 QIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPRRKGISLNMEQWSQLKEQISDIDDAV 116
Query: 68 NE 69
+
Sbjct: 117 RK 118
>gb|EAL23468.1| hypothetical protein CNBA1170 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 114
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/63 (46%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 9 EISKNRRVSVRNWQGRIVVDIREFYV--KDGKQMPGKKGISLTMDQWNVLRNHIEEIDKA 66
++S+ RR++VR ++G+ +VDIRE Y G PG KGISLT +QW +LRN+I+ +D+
Sbjct: 49 KLSEYRRLTVRTFKGKTLVDIREMYKDKSSGALKPGSKGISLTAEQWEILRNNIQNVDEM 108
Query: 67 VNE 69
V +
Sbjct: 109 VKK 111
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,699,262
Number of Sequences: 2540612
Number of extensions: 3514478
Number of successful extensions: 8544
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8457
Number of HSP's gapped (non-prelim): 57
length of query: 70
length of database: 863,360,394
effective HSP length: 46
effective length of query: 24
effective length of database: 746,492,242
effective search space: 17915813808
effective search space used: 17915813808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0036c.6