BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.8
(1310 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 712 0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 700 0.0
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 699 0.0
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 689 0.0
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis... 682 0.0
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 681 0.0
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 681 0.0
gb|AAU89728.1| putative retroelement pol polyprotein-like [Solan... 635 e-180
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 627 e-178
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2... 616 e-174
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 606 e-171
emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsi... 600 e-169
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar... 582 e-164
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 582 e-164
pir||F86470 probable retroelement polyprotein [imported] - Arabi... 557 e-156
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 536 e-150
emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|30212... 535 e-150
ref|NP_194047.2| protein kinase family protein [Arabidopsis thal... 535 e-150
dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana] 527 e-147
gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsi... 524 e-147
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626). [Arabidopsis thaliana]
gi|25301690|pir||G96722 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana
Length = 1315
Score = 712 bits (1838), Expect = 0.0
Identities = 363/772 (47%), Positives = 508/772 (65%), Gaps = 28/772 (3%)
Query: 548 HHLC*N-PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDN 606
+H C PQQN++VERKHQH+++VAR+L FQ+H+P+++W + AVYLINRLP P+L++
Sbjct: 551 YHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILED 610
Query: 607 KCPFQILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDL 666
KCPF++L TVP ++K+FG LC+ ST R KF PRA C F+G+ KG+ DL
Sbjct: 611 KCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDL 670
Query: 667 KSRVISISRNVTFHEHNPFKPLDSDLTPTQA--FP--TTLPPI---FDDDIPVPATVQAQ 719
++ I +SR+V FHE F L SDL+ + FP PP+ D + + +
Sbjct: 671 ETHSIIVSRHVVFHEEL-FPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSSSV 729
Query: 720 E--PPVNNQNQVIAP--RTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVL 775
E P N N V P +TS R K P+YLQDY+C + S S P + + K L
Sbjct: 730 EILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVS-STP---------HEIRKFL 779
Query: 776 SYDHLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDS 835
SYD +N Y +F+ + + EP+ ++EA K + WR AM E + LE TW + P D
Sbjct: 780 SYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADK 839
Query: 836 KPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCA 895
+ IGC+W++K+KY DGS+ERYKARLV +GYTQ EG+D+ +TFSPVAK+ +++++L + A
Sbjct: 840 RCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAA 899
Query: 896 SQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKA-----NQVCLLQKSLYGLKQASR 950
L QLD+ NAFL+ LDE+IYM +PQG + N VC L+KSLYGLKQASR
Sbjct: 900 RFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASR 959
Query: 951 QWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSL 1010
QW+ S++L LG+ QS DHT ++K S G F +L+Y DD+++A N+ + ++KS +
Sbjct: 960 QWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQM 1019
Query: 1011 HDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKL 1070
F+++DLGE KYFLGLEI RS GI ++QRKYAL L+ ++G L KP S PMD S
Sbjct: 1020 KSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVF 1079
Query: 1071 GTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYL 1130
+ G ++G YRRL+GRL+YLN TRPDITFAVN+L+QF AP H QA +++L+Y+
Sbjct: 1080 AHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYI 1139
Query: 1131 KGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASR 1190
KG+ G GLFY A+S L ++++D+ C D+R+S +GYC+FLGDSLI W+S+KQ S+
Sbjct: 1140 KGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSK 1199
Query: 1191 SSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHI 1250
SS E+EYR+++ E+ WL L++L P PT +F DN++A+HIA+N +HERTKHI
Sbjct: 1200 SSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHI 1259
Query: 1251 ELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDI 1302
E DCH VRE+L +GL L I+T LQ AD FTK L P+ F ISK+G+ +I
Sbjct: 1260 ESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGLLNI 1311
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 700 bits (1806), Expect = 0.0
Identities = 363/781 (46%), Positives = 502/781 (63%), Gaps = 26/781 (3%)
Query: 531 PGISHASFLFF*GHHSSHHLC*NPQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVA 590
P + SF G S H P+QN++VERKHQH+++VARAL+FQ+ +P++ W V
Sbjct: 686 PELKFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVL 745
Query: 591 HAVYLINRLPTPVLDNKCPFQILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCI 650
AV+LINR P+ +L NK P++IL T P L+ FG LC+ ST R KF PR+ C+
Sbjct: 746 TAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACL 805
Query: 651 FLGFKPDTKGFVTYDLKSRVISISRNVTFHEHN-PFKPLDSDLTPTQAFPTTLPP---IF 706
FLG+ KG+ DL+S + ISRNV FHE P + + F +P I
Sbjct: 806 FLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGII 865
Query: 707 DDDIPVPATVQAQEPPVNNQNQVIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTG 766
D P+++ +Q + Q +SQR+RKPP++L DYHC + SD
Sbjct: 866 SDTTHSPSSLPSQISDLPPQI------SSQRVRKPPAHLNDYHCNTMQSDH--------- 910
Query: 767 INYPLSKVLSYDHLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTW 826
YP+S +SY ++P + ++ NI+ PT ++EA + W +A+D EI A+E+ TW
Sbjct: 911 -KYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTW 969
Query: 827 ILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTT 886
+ P K +GCKWV+ +K+ DG++ERYKARLV KGYTQ EG+D+ DTFSPVAKMTT
Sbjct: 970 EITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTT 1029
Query: 887 LRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNK-----ANQVCLLQKS 941
++++L + AS+ W L QLDV NAFL+ L+E+I+M IP+G K +N V L++S
Sbjct: 1030 IKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRS 1089
Query: 942 LYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMH 1001
+YGLKQASRQWF S+SL LG+K+++ DHTL++K G F +L+Y DD+++A
Sbjct: 1090 IYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEA 1149
Query: 1002 EIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVS 1061
+ L +F+++DLG+ KYFLGLE+AR+T+GI + QRKYAL+L+ +G LA KPVS
Sbjct: 1150 AAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVS 1209
Query: 1062 TPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQ 1121
PM + K+ + G + DI YRR+VG+L+YL TRPDITFAVN+L QF SAP H
Sbjct: 1210 VPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLT 1269
Query: 1122 AAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWR 1181
AA+RVL+Y+KG+ G GLFY ASS TL F+DSDWA C D+R+S T + +F+GDSLISWR
Sbjct: 1270 AAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWR 1329
Query: 1182 SKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNP 1241
SKKQ T SRSS E+EYRA+A CE+ WL LL L P ++ D+ +A++IA NP
Sbjct: 1330 SKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPI-LYSDSTAAIYIATNP 1388
Query: 1242 SYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKD 1301
+HERTKHI+LDCH VRE+L G + LL + T Q AD+ TK L P F+ SK+ + +
Sbjct: 1389 VFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSILN 1448
Query: 1302 I 1302
I
Sbjct: 1449 I 1449
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
11.19) [Arabidopsis thaliana] gi|7486705|pir||T01879
hypothetical protein F8M12.17 - Arabidopsis thaliana
Length = 1633
Score = 699 bits (1804), Expect = 0.0
Identities = 370/801 (46%), Positives = 500/801 (62%), Gaps = 80/801 (9%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN++VERKHQH++++AR+LLFQ+++P+ +WS V A YLINRLP+P+LDNK PF++L
Sbjct: 651 PQQNSVVERKHQHLLNIARSLLFQSNVPLQYWSDCVLTAAYLINRLPSPLLDNKTPFELL 710
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
+PD T LK LC+ ST R KF PRA C+FLG+ KG+ DL+S ISI
Sbjct: 711 LKKIPDYTLLK--SCLCYASTNVHDRNKFSPRARPCVFLGYPSGYKGYKVLDLESHSISI 768
Query: 674 SRNVTFHEHN-PFKPLDSDLTPTQAFPTTLPPI-----------FDDDI----------- 710
+RNV FHE PFK FP ++ P+ DDD+
Sbjct: 769 TRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFVESMPLDDDLRADDNNASTSN 828
Query: 711 ---------PVPATVQAQEPPVNNQNQVIAP-RTSQRIRKPPSYLQDYHCTLLSSDSVPI 760
P+P+TV Q + + P +R K P+YL +YHC +SVP
Sbjct: 829 SASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAKAPAYLSEYHC-----NSVPF 883
Query: 761 TSS-----STGIN--------------YPLSKVLSYDHLNPKYQSFVMNISSSLEPTRFS 801
SS ST I YP+S +SYD L P + S++ + EP F+
Sbjct: 884 LSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHSYICAYNVETEPKAFT 943
Query: 802 EAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARL 861
+A+K E W +A ++E+ ALE+N+TWI+ +GCKWV+ +KY DGSIERYKARL
Sbjct: 944 QAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSIERYKARL 1003
Query: 862 VVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYM 921
V +G+TQ EG+D+ +TFSPVAK +++++L L A+ W L Q+DV NAFLH LDE+IYM
Sbjct: 1004 VAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYM 1063
Query: 922 TIPQGL-----VCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYI 976
++PQG + + VC L KSLYGLKQASRQW+ LS+ + QS AD+T+++
Sbjct: 1064 SLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMFV 1123
Query: 977 KASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSG 1036
K S S +L+Y DD+++A ND ++ +K L +F+IKDLG A++FLGLEIARS+ G
Sbjct: 1124 KVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEG 1183
Query: 1037 IVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNT 1096
I + QRKYA L+ D G KP S PMD + L +GT L + SYR LVGRLLYL
Sbjct: 1184 ISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCI 1243
Query: 1097 TRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDW 1156
TRPDITFAV+ LSQFLSAPTDIH QAAH+VL+YLKG+PG D+DW
Sbjct: 1244 TRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPG----------------QDADW 1287
Query: 1157 AGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQD 1216
C D+R+S+TG+C++LG SLI+W+SKKQS SRSS ESEYR++A CEI WL LL+D
Sbjct: 1288 GTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKD 1347
Query: 1217 LNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQ 1276
L+ P +F DN+SA+H+A NP +HERTKHIE+DCH VR++++ G + L + T Q
Sbjct: 1348 LHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGNQ 1407
Query: 1277 TADVFTKSLTPAPFKTCISKL 1297
AD+ TK L P PF + + ++
Sbjct: 1408 LADILTKPLHPGPFHSLLKRI 1428
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 689 bits (1778), Expect = 0.0
Identities = 350/771 (45%), Positives = 489/771 (63%), Gaps = 37/771 (4%)
Query: 547 SHHLC*N-PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLD 605
++H C P+QN++VERKHQH+++VARALLFQ+++P+ FW V AV+LINRLPTPVL+
Sbjct: 687 AYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLN 746
Query: 606 NKCPFQILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYD 665
NK P++ L N P +LK FG LC+ ST R KF+PRA C+FLG+ KG+ D
Sbjct: 747 NKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLD 806
Query: 666 LKSRVISISRNVTFHEHN-PFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVN 724
+++ +SISR+V FHE PF FP P DD+P+ T P
Sbjct: 807 IETHAVSISRHVIFHEDIFPFISSTIKDDIKDFFPLLQFPARTDDLPLEQTSIIDTHPHQ 866
Query: 725 N--QNQVIAP--RTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHL 780
+ ++ + P S+R +KPP +LQD+HC Y++
Sbjct: 867 DVSSSKALVPFDPLSKRQKKPPKHLQDFHC--------------------------YNNT 900
Query: 781 NPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGC 840
+ +F+ NI++++ P R+SEA + W AM +EI A+ R TW +V PP+ K IGC
Sbjct: 901 TEPFHAFINNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGC 960
Query: 841 KWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WH 900
KWV+ +K+ DGSIERYKARLV KGYTQ EG+D+++TFSPVAK+T++R++L L A W
Sbjct: 961 KWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWS 1020
Query: 901 LHQLDVDNAFLHASLDEQIYMTIPQGLV-----CNKANQVCLLQKSLYGLKQASRQWFNT 955
+HQLD+ NAFL+ LDE+IYM IP G + +C L KS+YGLKQASRQW+
Sbjct: 1021 VHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLK 1080
Query: 956 LSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFR 1015
LS +LK +G+++SNADHTL+IK ++G +L+Y DD+++ N + + L F+
Sbjct: 1081 LSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFK 1140
Query: 1016 IKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIG 1075
++DLG AKYFLG+EIARS GI + QRKY L+L+S +G L SKP S P+D S KL G
Sbjct: 1141 LRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDG 1200
Query: 1076 TPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPG 1135
PLTD SYR+LVG+L+YL TRPDI +AVN L QF APT +H A H+VL+YLKG+ G
Sbjct: 1201 VPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVG 1260
Query: 1136 SGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCES 1195
GLFY A L ++DSD+ C D+R+ + YC+F+GD L+SW+SKKQ T S S+ E+
Sbjct: 1261 QGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEA 1320
Query: 1196 EYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCH 1255
E+RAM+ E+ WL L D P + P ++ DN +A+HI +N +HERTK +ELDC+
Sbjct: 1321 EFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCY 1380
Query: 1256 IVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLPV 1306
RE ++ G + + + T Q AD TK++ PA F I K+G+ +I P+
Sbjct: 1381 KTREAVESGFLKTMFVETGEQVADPLTKAIHPAQFHKLIGKMGVCNIFAPL 1431
>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
gi|7268152|emb|CAB78488.1| retrovirus-related like
polyprotein [Arabidopsis thaliana] gi|7488175|pir||G71406
probable retrovirus-related polyprotein - Arabidopsis
thaliana
Length = 1489
Score = 682 bits (1760), Expect = 0.0
Identities = 362/821 (44%), Positives = 499/821 (60%), Gaps = 112/821 (13%)
Query: 544 HHSSHHL--C*NPQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPT 601
H HH PQQN++VERKHQH+++VARALLFQ+++P+ +WS V AV+LINRLP+
Sbjct: 716 HGMLHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPS 775
Query: 602 PVLDNKCPFQILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGF 661
P+L+NK P++++ N PD + LK FG LCFVST R KF PRA C+FLG+ KG+
Sbjct: 776 PLLNNKSPYELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGY 835
Query: 662 VTYDLKSRVISISRNVTFHEHN-PFKPLDS-----DLTPTQAFPTTLP-------PIFDD 708
DL+S +++SRNV F EH PFK + D+ P P P P+ D+
Sbjct: 836 KVLDLESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILPLPAPLHFVETMPLIDE 895
Query: 709 DIPVPATVQAQE----------------PPVNN------QNQVIAPRTSQRIRKPPSYLQ 746
D +P T ++ PP +N + + S+R + PSYL
Sbjct: 896 DSLIPTTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDSNAVPITRSKRTTRAPSYLS 955
Query: 747 DYHCTLLSSDS-VPITSSSTGIN----------------YPLSKVLSYDHLNPKYQSFVM 789
+YHC+L+ S S +P T SS I+ YP+S V+SYD P QS++
Sbjct: 956 EYHCSLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIF 1015
Query: 790 NISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYK 849
++ EP FS+A+K E W + +E++A+E N+TW + PPD +GCKWV+ +KY
Sbjct: 1016 AYNTETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYN 1075
Query: 850 QDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNA 909
DG++ERYKARLV +G+TQ EG+DF DTFSPVAK+T+ +++L L A W L Q+DV +A
Sbjct: 1076 PDGTVERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDA 1135
Query: 910 FLHASLDEQIYMTIPQGLVCNKA-----NQVCLLQKSLYGLKQASRQWFNTLSASLKKLG 964
FLH LDE+I+M++PQG N VC L KS+YGLKQASRQW+
Sbjct: 1136 FLHGDLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR--------- 1186
Query: 965 YKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKY 1024
F A L+Y DD+++A N+ E++ +K+ L +F+IKDLG A++
Sbjct: 1187 ------------------FVAALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARF 1228
Query: 1025 FLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSY 1084
FLGL L KP S PMD + L ++GTPL + +Y
Sbjct: 1229 FLGL--------------------------LGCKPSSIPMDPTLHLVRDMGTPLPNPTAY 1262
Query: 1085 RRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASS 1144
R+L+GRLLYL TRPDIT+AV+QLSQF+SAP+DIH QAAH+VL+Y+K +PG GL Y A
Sbjct: 1263 RKLIGRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADY 1322
Query: 1145 STTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTV 1204
L FSD+DWA C DTR+SI+G+C++LG SLISW+SKKQ+ ASRSS ESEYR+MA
Sbjct: 1323 EICLNGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQAT 1382
Query: 1205 CEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQG 1264
CEI WL LL+DL+ P P +F DN+SA+H + NP +HERTKHIE+DCH VR++++ G
Sbjct: 1383 CEIIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAG 1442
Query: 1265 LVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLP 1305
+ L + T Q AD+ TK+L P PF + ++ + + LP
Sbjct: 1443 NLKALHVPTENQHADILTKALHPGPFHHLLRQMSLSSLFLP 1483
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301701|pir||E84589 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1461
Score = 681 bits (1758), Expect = 0.0
Identities = 354/766 (46%), Positives = 492/766 (64%), Gaps = 31/766 (4%)
Query: 547 SHHLC*N-PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLD 605
S H C P+QN++VERKHQH+++VARAL+FQ+++ + +W V AV+LINR P+ +L
Sbjct: 712 SFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLS 771
Query: 606 NKCPFQILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYD 665
NK PF++L +PD + LK FG LC+ ST + R KF PR+ C+FLG+ KG+ D
Sbjct: 772 NKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLD 831
Query: 666 LKSRVISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPA----TVQAQEP 721
L+S V+ ISRNV FHE PL S +Q TT +F P+ + T P
Sbjct: 832 LESNVVHISRNVEFHEE--LFPLAS----SQQSATTASDVFTPMDPLSSGNSITSHLPSP 885
Query: 722 PVNNQNQVIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLN 781
++ Q+ + +RI K P++LQDYHC ++ D ++P+S LSY ++
Sbjct: 886 QISPSTQI----SKRRITKFPAHLQDYHCYFVNKDD----------SHPISSSLSYSQIS 931
Query: 782 PKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCK 841
P + ++ NIS P + EA + W A+DQEI A+ER TW + PP K +GCK
Sbjct: 932 PSHMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCK 991
Query: 842 WVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHL 901
WV+ VK+ DGS+ER+KAR+V KGYTQ EG+D+ +TFSPVAKM T++++L + AS+ W+L
Sbjct: 992 WVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYL 1051
Query: 902 HQLDVDNAFLHASLDEQIYMTIPQGLVCNKA-----NQVCLLQKSLYGLKQASRQWFNTL 956
+QLD+ NAFL+ L+E IYM +P G K N VC L+KS+YGLKQASRQWF
Sbjct: 1052 NQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKF 1111
Query: 957 SASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRI 1016
S SL LG+++ + DHTL+++ F LL+Y DD+++A Q + +L F++
Sbjct: 1112 SNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKL 1171
Query: 1017 KDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGT 1076
++LG KYFLGLE+AR++ GI L+QRKYAL+L++ + L KP S PM + +L N G
Sbjct: 1172 RELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGL 1231
Query: 1077 PLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGS 1136
L D YRRLVG+L+YL TRPDITFAVN+L QF SAP H A ++VL+Y+KG+ G
Sbjct: 1232 LLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQ 1291
Query: 1137 GLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESE 1196
GLFY A TL ++D+DW C D+R+S TG+ +F+G SLISWRSKKQ T SRSS E+E
Sbjct: 1292 GLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAE 1351
Query: 1197 YRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHI 1256
YRA+A CE+ WL LL L P ++ D+ +A++IA NP +HERTKHIE+DCH
Sbjct: 1352 YRALALASCEMAWLSTLLLALRVHSGVPI-LYSDSTAAVYIATNPVFHERTKHIEIDCHT 1410
Query: 1257 VREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDI 1302
VREKL G + LL + T Q AD+ TK L P F +SK+ +++I
Sbjct: 1411 VREKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQNI 1456
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 681 bits (1756), Expect = 0.0
Identities = 349/747 (46%), Positives = 496/747 (65%), Gaps = 25/747 (3%)
Query: 547 SHHLC*N-PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLD 605
++H C P+QN++VERKHQH+++VARALLFQ+ +P+++W + AV++INR P+PV+
Sbjct: 677 AYHSCPETPEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVIS 736
Query: 606 NKCPFQILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYD 665
NK F++L VPD T+LK FG LC+ ST R KF+ RA C FLG+ KG+ D
Sbjct: 737 NKTLFEMLTKKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGYKGYKLLD 796
Query: 666 LKSRVISISRNVTFHEHN-PFKPLDSDLTPTQAFPTTLPPIFDD--DIPVPATVQAQEPP 722
L+S I ISRNV F+E PFK ++ + F P I+ D D + QE
Sbjct: 797 LESHTIFISRNVVFYEDLFPFKTKPAENEESSVF---FPHIYVDRNDSHPSQPLPVQETS 853
Query: 723 VNNQNQVIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNP 782
+N V A + + R+ +PP+YL+DYHC ++S + ++P+S+VLSY L+
Sbjct: 854 ASN---VPAEKQNSRVSRPPAYLKDYHCNSVTSST----------DHPISEVLSYSSLSD 900
Query: 783 KYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKW 842
Y F+ ++ EP +++A + + W AM EI ALE N TW++ P K +GCKW
Sbjct: 901 PYMIFINAVNKIPEPHTYAQARQIKEWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCKW 960
Query: 843 VYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLH 902
VYK+K DGS+ERYKARLV KGYTQ EG+D+ DTFSPVAK+TT+++++A+ A++ W L
Sbjct: 961 VYKIKLNADGSLERYKARLVAKGYTQTEGLDYVDTFSPVAKLTTVKLLIAVAAAKGWSLS 1020
Query: 903 QLDVDNAFLHASLDEQIYMTIPQGLVCNKA-----NQVCLLQKSLYGLKQASRQWFNTLS 957
QLD+ NAFL+ SLDE+IYMT+P G + N VC L+KSLYGLKQASRQW+ S
Sbjct: 1021 QLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSFPPNAVCRLKKSLYGLKQASRQWYLKFS 1080
Query: 958 ASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIK 1017
SLK LG+ QS+ DHTL+ + S S+ A+L+Y DD+++A + E +L++ +L +++
Sbjct: 1081 ESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYVDDIIIASSCDRETELLRDALQRSSKLR 1140
Query: 1018 DLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTP 1077
DLG +YFLGLEIAR+T GI + QRKY L+L++++G L K S PM+ +QKL G
Sbjct: 1141 DLGTLRYFLGLEIARNTDGISICQRKYTLELLAETGLLGCKSSSVPMEPNQKLSQEDGEL 1200
Query: 1078 LTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSG 1137
+ D YR+LVG+L+YL TRPDIT+AV++L QF SAP H +A ++++ YLKG+ G G
Sbjct: 1201 IDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQFTSAPRVPHLKAVYKIIYYLKGTVGQG 1260
Query: 1138 LFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEY 1197
LFY A+ L+ F+DSD++ C D+RK TGYC+FLG SL++W+SKKQ S SS E+EY
Sbjct: 1261 LFYSANVDLKLSGFADSDFSSCSDSRKLTTGYCMFLGTSLVAWKSKKQEVISMSSAEAEY 1320
Query: 1198 RAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIV 1257
+AM+ V E+ WL +LL+DL + ++ DN +A+HIA+NP +HERTKHIE D H +
Sbjct: 1321 KAMSMAVREMMWLRFLLEDLWIDVSEASVLYCDNTAAIHIANNPVFHERTKHIERDYHHI 1380
Query: 1258 REKLQQGLVHLLPISTTLQTADVFTKS 1284
REK+ GL+ L + T Q AD+ KS
Sbjct: 1381 REKIILGLIRTLHVRTENQLADIPYKS 1407
>gb|AAU89728.1| putative retroelement pol polyprotein-like [Solanum tuberosum]
Length = 1476
Score = 635 bits (1637), Expect = e-180
Identities = 345/779 (44%), Positives = 484/779 (61%), Gaps = 52/779 (6%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN +VER+H+H++ ARAL FQ HLP+ FW V AV++INR+P+ VL NK PF+++
Sbjct: 704 PQQNGVVERRHKHILETARALRFQGHLPIRFWGECVLSAVHIINRIPSSVLHNKSPFELM 763
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
Y PD++ +++ G LC + L + + KG+ YDL+ + +
Sbjct: 764 YKRSPDLSYMRVIGCLCHATNLVNTSTQ-----------------KGYKLYDLEHQHFFV 806
Query: 674 SRNVTFHEHN-PFK-PLDSDLTPTQAFPTTLP---PIFDDDIPVPATVQAQE------PP 722
SR++ F+E PF+ P +D T F + P D D PA + ++E PP
Sbjct: 807 SRDMVFNEAVFPFQSPALADPHDTPVFLASPPCSSHTEDADAVQPAIITSEEIIPVASPP 866
Query: 723 VNNQNQVIAP----RTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYD 778
+ + P R S R KPP + +D+ T TS S YP+S + Y
Sbjct: 867 SAVSDDHLHPPPERRRSYRTGKPPIWQKDFITTS--------TSRSNHCLYPISDNIDYS 918
Query: 779 HLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPI 838
L+ YQ ++ + S EP + +A W AM +EI+ALE N+TW +V P K I
Sbjct: 919 CLSSTYQCYIASSSVETEPQFYYQAANDCRWVHAMKEEIQALEDNKTWEVVSLPKGKKAI 978
Query: 839 GCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ* 898
GCKWVYK+KYK G IER+KARLV KGY Q EG+D+Q+TFSPV KM TLR +L L S+
Sbjct: 979 GCKWVYKIKYKASGEIERFKARLVAKGYNQKEGLDYQETFSPVVKMVTLRTVLTLAVSKG 1038
Query: 899 WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKAN--QVCLLQKSLYGLKQASRQWFNTL 956
W + Q+DV NAFL L E++YM +PQG +K +VC L KSLYGLKQASRQW L
Sbjct: 1039 WDIQQMDVYNAFLQGDLIEEVYMQLPQGFQYDKTGDPKVCRLLKSLYGLKQASRQWNVKL 1098
Query: 957 SASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRI 1016
+ +L G++QS+ D++L +K ++ +L+Y DD+L+ G+ + I K L F+I
Sbjct: 1099 TTALLAAGFQQSHLDYSLMLKRTADGIVIVLIYVDDLLITGSSLQLIDDAKQVLKANFKI 1158
Query: 1017 KDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGT---- 1072
KDLG +YFLG+E AR+ SG++++QRKYAL+LISD G SKP TP++ KL T
Sbjct: 1159 KDLGTLRYFLGMEFARNASGMLMHQRKYALELISDLGLGGSKPSVTPVELHLKLTTREFD 1218
Query: 1073 -NIGTP-----LTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRV 1126
++G+ L D Y+RLVGRLLYL TRPDI+FAV LSQF+ AP H +AA RV
Sbjct: 1219 LHVGSSGADSLLADPTEYQRLVGRLLYLTITRPDISFAVQHLSQFMHAPKVSHMEAAIRV 1278
Query: 1127 LKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQS 1186
+KY+K +PG GL+ ++ TL A+ D+DW CI+TRKSITGY + G +L+SW+SKKQ
Sbjct: 1279 VKYVKQAPGLGLYMAVQTADTLQAYCDADWGSCINTRKSITGYMIQFGSALLSWKSKKQP 1338
Query: 1187 TASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHER 1246
T SRSS E+EYR++A+TV E+ WL L ++L+ P P S++ D+++A+ IA NP +HER
Sbjct: 1339 TISRSSAEAEYRSLASTVAELVWLTGLFKELDMPLSLPVSLYCDSKAAIQIAANPVFHER 1398
Query: 1247 TKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLP 1305
TKHI++DCH +REK+Q GLV + + T Q AD+ TK L+ A +SKLG+K+I +P
Sbjct: 1399 TKHIDIDCHFIREKVQAGLVMIHYLPTQEQPADILTKGLSSAQHSYLVSKLGLKNIFIP 1457
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 627 bits (1617), Expect = e-178
Identities = 334/821 (40%), Positives = 492/821 (59%), Gaps = 69/821 (8%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN VERKH+H+++VARALLFQA LP+ FW ++ A YLINR P+ +L + P+++L
Sbjct: 680 PQQNGRVERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVL 739
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
+ + P + L++FG+ C+V +T + KF R+ CIF+G+ KG+ YD++ +
Sbjct: 740 HGSKPVYSQLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLV 799
Query: 674 SRNVTFHEHN-PFKPLDSDLTPTQAFPTT-------LPP--------------------- 704
SR+V F E P+ ++S + + PT +PP
Sbjct: 800 SRDVIFREEVFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVETERVVCTTDE 859
Query: 705 ------IFDDDIP------------VPATVQAQEPPVNNQNQVIAP------------RT 734
+ D +IP P +V P ++ P R
Sbjct: 860 VVLDTSVSDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRK 919
Query: 735 SQRIRKPPSYLQDYHC-----TLLSSDSVPITSSSTGIN-----YPLSKVLSYDHLNPKY 784
S+R PP L DY T S ++P S + +PL+ +S + +
Sbjct: 920 SKRATHPPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGKSLFPLTDYVSDAAFSSSH 979
Query: 785 QSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVY 844
++++ I+ ++EP F EAV+ + W AM E++ALE N+TW +VD PP IG +WV+
Sbjct: 980 RAYLAAITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVF 1039
Query: 845 KVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQL 904
K KY DG++ERYKARLVV+G QVEG D+++TF+PV +MTT+R +L A+ W ++Q+
Sbjct: 1040 KTKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQM 1099
Query: 905 DVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLG 964
DV NAFLH L+E++YM +P G + ++VC L+KSLYGLKQA R WF LS SL + G
Sbjct: 1100 DVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFG 1159
Query: 965 YKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKY 1024
+ QS D++L+ + +L+Y DD+L+ GND + +Q K L F +KDLG+ KY
Sbjct: 1160 FVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKY 1219
Query: 1025 FLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSY 1084
FLG+E++R GI L+QRKYAL +I+DSG+L S+P TP++ + L ++ G L+D Y
Sbjct: 1220 FLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPY 1279
Query: 1085 RRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASS 1144
RRLVGRLLYL TRP+++++V+ L+QF+ P + H AA RV++YLKGSPG G+ A
Sbjct: 1280 RRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADP 1339
Query: 1145 STTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTV 1204
TL + DSDW C TR+SI+ Y + LG S ISW++KKQ T S SS E+EYRAM+ +
Sbjct: 1340 DLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYAL 1399
Query: 1205 CEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQG 1264
EI+WL LL++L Q P ++ D+++A+HIA NP +HERTKHIE DCH VR+ ++ G
Sbjct: 1400 KEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDG 1459
Query: 1265 LVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLP 1305
++ + TT Q ADVFTK+L F +SKLG++++H P
Sbjct: 1460 IITTQHVRTTEQLADVFTKALGRNQFLYLMSKLGVQNLHTP 1500
>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
probable polyprotein T8L23.26 [imported] - Arabidopsis
thaliana
Length = 1468
Score = 616 bits (1588), Expect = e-174
Identities = 313/802 (39%), Positives = 490/802 (61%), Gaps = 51/802 (6%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
P QN VERKH+H++++ARAL FQ++LP+ FW + A YLINR P+ +L K P+++L
Sbjct: 667 PHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEML 726
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
Y T P ++L++FG+LC+ KF R+ +C+F+G+ KG+ +DL+ + +
Sbjct: 727 YKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFV 786
Query: 674 SRNVTFHEHN-PFKPL----------------------------------DSDLTPTQAF 698
SR+V F E P+ + ++ + P A
Sbjct: 787 SRDVIFQETEFPYSKMSCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVAT 846
Query: 699 PTTLPPIFD--------------DDIPVPATVQAQEPPVNNQNQV-IAPRTSQRIRKPPS 743
+P I D +TVQ + P+++ I R S R + P
Sbjct: 847 GPIIPEINQESSSPSEFVSLSSLDPFLASSTVQTADLPLSSTTPAPIQLRRSSRQTQKPM 906
Query: 744 YLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPKYQSFVMNISSSLEPTRFSEA 803
L+++ +S +S+ +SS+ + YP+ K + +++F+ +++ +EPT ++EA
Sbjct: 907 KLKNFVTNTVSVESISPEASSSSL-YPIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYNEA 965
Query: 804 VKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVV 863
+ + WR+AM EIE+L NQT+ +V+ PP + +G KWVYK+KY+ DG+IERYKARLVV
Sbjct: 966 MVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVV 1025
Query: 864 KGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTI 923
G Q EGVD+ +TF+PVAKM+T+R+ L + A++ WH+HQ+DV NAFLH L E++YM +
Sbjct: 1026 LGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKL 1085
Query: 924 PQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSF 983
PQG C+ ++VC L KSLYGLKQA R WF+ LS++LK+ G+ QS +D++L+ + G F
Sbjct: 1086 PQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIF 1145
Query: 984 TALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRK 1043
+L+Y DD++++G+ + KS L F +KDLG KYFLG+E++R+ G L+QRK
Sbjct: 1146 VHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRK 1205
Query: 1044 YALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITF 1103
Y L +IS+ G L ++P + P++ + KL + L+D YRRLVGRL+YL TRP++++
Sbjct: 1206 YVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSY 1265
Query: 1104 AVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTR 1163
+V+ L+QF+ P H AA RV++YLK +PG G+ ++S+ + + DSD+A C TR
Sbjct: 1266 SVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTR 1325
Query: 1164 KSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLA 1223
+S+TGY + LGD+ ISW++KKQ T SRSS E+EYRAMA E+ WL +L DL +
Sbjct: 1326 RSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQ 1385
Query: 1224 PTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTK 1283
+F D++SA+ ++ NP HERTKH+E+DCH +R+ + G++ + + Q AD+ TK
Sbjct: 1386 AMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTK 1445
Query: 1284 SLTPAPFKTCISKLGMKDIHLP 1305
+L + + KLG+ D+H P
Sbjct: 1446 ALGEKEVRYFLRKLGILDVHAP 1467
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 606 bits (1563), Expect = e-171
Identities = 331/828 (39%), Positives = 490/828 (58%), Gaps = 76/828 (9%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN VERKH+H+++V+RALLFQA LP+ FW AV A YLINR P+ + + P+++L
Sbjct: 663 PQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELL 722
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLK------ 667
+ PD L++FG+ C+ +T + KF R+ CIF+G+ KG+ YDL
Sbjct: 723 HGCKPDYDQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIV 782
Query: 668 SRVISISRNVTFHEHN---------------------PFKPLD----------------- 689
SR + NV + N PF L+
Sbjct: 783 SRDVVFRENVFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRGSDENSLSDPPVCVT 842
Query: 690 --SDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQV------------------ 729
S+ P +LP DD + +V + P N+ +
Sbjct: 843 DVSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTSPSTNVSPPQQDTTPIIE 902
Query: 730 -IAPRTSQRIRKPPSYLQDY-----HCT-----LLSSDSVPITSSSTGIN-YPLSKVLSY 777
PR +R + + L+DY CT +LS + +SS G + YPL+ +
Sbjct: 903 NTPPRQGKRQVQQLARLKDYILYNASCTPNTPHVLSPSTSQSSSSIQGNSQYPLTDYIFD 962
Query: 778 DHLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKP 837
+ + ++ F+ I+++ EP F EAVK + W AM +E++ALE N+TW +VD P
Sbjct: 963 ECFSAGHKVFLAAITANDEPKHFKEAVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVA 1022
Query: 838 IGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ 897
IG +WVYK K+ DG++ERYKARLVV+G Q+EG D+ +TF+PV KMTT+R +L L A+
Sbjct: 1023 IGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAAN 1082
Query: 898 *WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLS 957
W ++Q+DV NAFLH L+E++YM +P G + ++VC L+KSLYGLKQA R WF LS
Sbjct: 1083 QWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLS 1142
Query: 958 ASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIK 1017
+LK+ G+ Q D++ + + G +L+Y DD+++ GND + +Q K L F +K
Sbjct: 1143 DALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMK 1202
Query: 1018 DLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTP 1077
DLG+ KYFLG+E++R GI L+QRKYAL +ISDSG L ++P TP++ + L ++ G
Sbjct: 1203 DLGKLKYFLGIEVSRGPDGIFLSQRKYALDIISDSGTLGARPAYTPLEQNHHLASDDGPL 1262
Query: 1078 LTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSG 1137
L D +RRLVGRLLYL TRP+++++V+ LSQF+ AP + H +AA R+++YLKGSPG G
Sbjct: 1263 LQDPKPFRRLVGRLLYLLHTRPELSYSVHVLSQFMQAPREAHLEAAMRIVRYLKGSPGQG 1322
Query: 1138 LFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEY 1197
+ ++ TL + DSD+ C TR+S++ Y + LG S ISW++KKQ T S SS E+EY
Sbjct: 1323 ILLSSNKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLGGSPISWKTKKQDTVSHSSAEAEY 1382
Query: 1198 RAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIV 1257
RAM+ + EI+WL+ LL++L APT +F D+++A+ IA NP +HERTKHIE DCH V
Sbjct: 1383 RAMSVALKEIKWLNKLLKELGITLAAPTRLFCDSKAAISIAANPVFHERTKHIERDCHSV 1442
Query: 1258 REKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLP 1305
R+ ++ G++ + T+ Q AD+FTK+L F +SKLG++++H P
Sbjct: 1443 RDAVRDGIITTHHVRTSEQLADIFTKALGRNQFIYLMSKLGIQNLHTP 1490
>emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
gi|4539373|emb|CAB40067.1| putative retrotransposon
polyprotein [Arabidopsis thaliana] gi|7486142|pir||T04294
hypothetical protein F25I24.200 - Arabidopsis thaliana
Length = 1203
Score = 600 bits (1547), Expect = e-169
Identities = 321/686 (46%), Positives = 427/686 (61%), Gaps = 62/686 (9%)
Query: 659 KGFVTYDLKSRVISISRNVTFHEHN-PFKPLDSDLTPTQAFPTTLPPI-----------F 706
KG+ DL+S ISI+RNV FHE PFK FP ++ P+
Sbjct: 340 KGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFVESMPL 399
Query: 707 DDDI--------------------PVPATVQAQEPPVNNQNQVIAP-RTSQRIRKPPSYL 745
DDD+ P+P+TV Q + + P +R K P+YL
Sbjct: 400 DDDLRADDNNASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAKAPAYL 459
Query: 746 QDYHCTLLSSDSVPITSS-----STGIN--------------YPLSKVLSYDHLNPKYQS 786
+YHC +SVP SS ST I YP+S +SYD L P + S
Sbjct: 460 SEYHC-----NSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHS 514
Query: 787 FVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKV 846
++ + EP F++A+K E W +A ++E+ ALE+N+TWI+ +GCKWV+ +
Sbjct: 515 YICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTI 574
Query: 847 KYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDV 906
KY DGSIERYKARLV +G+TQ EG+D+ +TFSPVAK +++++L L A+ W L Q+DV
Sbjct: 575 KYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDV 634
Query: 907 DNAFLHASLDEQIYMTIPQGL-----VCNKANQVCLLQKSLYGLKQASRQWFNTLSASLK 961
NAFLH LDE+IYM++PQG + + VC L KSLYGLKQASRQW+ LS+
Sbjct: 635 SNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFL 694
Query: 962 KLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGE 1021
+ QS AD+T+++K S S +L+Y DD+++A ND ++ +K L +F+IKDLG
Sbjct: 695 GANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGP 754
Query: 1022 AKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDI 1081
A++FLGLEIARS+ GI + QRKYA L+ D G KP S PMD + L +GT L +
Sbjct: 755 ARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNA 814
Query: 1082 GSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYP 1141
SYR LVGRLLYL TRPDITFAV+ LSQFLSAPTDIH QAAH+VL+YLKG+PG GL Y
Sbjct: 815 TSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYS 874
Query: 1142 ASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMA 1201
ASS L FSD+DW C D+R+S+TG+C++LG SLI+W+SKKQS SRSS ESEYR++A
Sbjct: 875 ASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLA 934
Query: 1202 TTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKL 1261
CEI WL LL+DL+ P +F DN+SA+H+A NP +HERTKHIE+DCH VR+++
Sbjct: 935 QATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQI 994
Query: 1262 QQGLVHLLPISTTLQTADVFTKSLTP 1287
+ G + L + T Q AD+ TK L P
Sbjct: 995 KAGKLKTLHVPTGNQLADILTKPLHP 1020
>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar-group)]
gi|50925209|ref|XP_472906.1| OSJNBb0011N17.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1262
Score = 582 bits (1499), Expect = e-164
Identities = 318/819 (38%), Positives = 471/819 (56%), Gaps = 73/819 (8%)
Query: 556 QNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQILYN 615
+N + ERK++H++ +AR+L++ ++P WS AV A YLINR P+ +L K P+++++
Sbjct: 447 ENGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSRILGMKTPYEMIFG 506
Query: 616 TVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGF-------------- 661
+ ++FG CFV K DPRA KCIF+G+ KG+
Sbjct: 507 KNEFVVPPRVFGCTCFVRDHRPSIGKLDPRAVKCIFIGYSSSQKGYKCWSPSERRTFVSM 566
Query: 662 -VTY-----------DLKSRVISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDD 709
VT+ D+ S + + ++T +H+ K + ++ + + I +
Sbjct: 567 DVTFRESVPFYGEKTDISSLFVDLD-DLTRGDHDQQK--EGEILGLKENEQSKGKIVVGE 623
Query: 710 IPV----PATVQAQEPPVNNQNQVIAPR-----TSQRIRKPPSYLQDYHCTLLSSDS--- 757
IP P Q P +N + R T+Q++ D +SS+S
Sbjct: 624 IPCAIGDPVQEQEWRKPHEEENLQVYTRRMRLPTTQQVEVDDQVSDDLTHVQVSSESGGE 683
Query: 758 ----------VPIT--------------------SSSTGINYPLSKVLSYDHLNPKYQSF 787
+PI +G ++ +SY L+ Y++F
Sbjct: 684 QIEIREEESNLPIAIRKGMRSNAGKPPQRYGFEIGDESGDENDIANYVSYTSLSSTYKAF 743
Query: 788 VMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVK 847
V +++S++ P + EA + W +AM E+EALE+N+TW LV P K + CKWVY VK
Sbjct: 744 VASLNSAIIPKDWKEAKQDPRWHQAMLDELEALEKNKTWDLVSYPNGKKVVNCKWVYAVK 803
Query: 848 YKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVD 907
DG +ERYKARLV KGY+Q G+D+ +TF+PVAKM+T+R I++ + W LHQLDV
Sbjct: 804 QNPDGKVERYKARLVAKGYSQTYGIDYDETFAPVAKMSTVRTIISCAVNFDWPLHQLDVK 863
Query: 908 NAFLHASLDEQIYMTIPQGLVCNKAN-QVCLLQKSLYGLKQASRQWFNTLSASLKKLGYK 966
NAFLH L E++YM IP G + +V L+KSLYGLKQ+ R WF+ ++ +GYK
Sbjct: 864 NAFLHGDLQEEVYMEIPPGFATLQTKGKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYK 923
Query: 967 QSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFL 1026
Q N DHT++ S T L +Y DD+++ GND EI +K +L +F +KDLG+ KYFL
Sbjct: 924 QCNGDHTVFYHHSGDHITILAVYVDDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFL 983
Query: 1027 GLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRR 1086
G+EIARS GIVL+QRKYAL L+SD+G L +P STP+D + KL G P+ Y+R
Sbjct: 984 GIEIARSPRGIVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNPVNK-ERYQR 1042
Query: 1087 LVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSST 1146
LVGRL+YL TRPDIT+AV+ +S+++ P H A +R+L+YLKGSPG GL++ +
Sbjct: 1043 LVGRLIYLCHTRPDITYAVSMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHL 1102
Query: 1147 TLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCE 1206
+ + D+DWA C D R+S +GYC+F+G +L+SWRSKKQ SRS+ E+EYRAM+ ++ E
Sbjct: 1103 EVEGYCDADWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSVSLSE 1162
Query: 1207 IQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLV 1266
+ WL LL +L P P ++ DN+SA+ IA+NP H+RTKH+ELD ++EKL +G++
Sbjct: 1163 LLWLRNLLSELMLPVDTPMKLWCDNKSAISIANNPVQHDRTKHVELDRFFIKEKLDEGVL 1222
Query: 1267 HLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLP 1305
L + + Q AD FTK L + K+GM DI+ P
Sbjct: 1223 ELEFVMSGGQVADCFTKGLGVKECNSSCDKMGMIDIYHP 1261
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 582 bits (1499), Expect = e-164
Identities = 311/761 (40%), Positives = 453/761 (58%), Gaps = 50/761 (6%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN + ERK++H+I AR LL ++++P+ FW AV + YLINR+P+ + N+ P IL
Sbjct: 638 PQQNGVAERKNRHLIETARTLLLESNVPLRFWGDAVLTSCYLINRMPSSSIQNQVPHSIL 697
Query: 614 YNT-----VPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKS 668
+ +P ++FG+ CFV L + K PRA KC+FLG+ KG+ Y
Sbjct: 698 FPQSHLYPIPP----RVFGSTCFVHNLAPGKDKLAPRALKCVFLGYSRVQKGYRCYSHDL 753
Query: 669 RVISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQ 728
+S +VTF E P+ S P + +P + +PVP V E V + +
Sbjct: 754 HRYLMSADVTFFESQPY--YTSSNHPDVSMVLPIPQV----LPVPTFV---ESTVTSTSP 804
Query: 729 VIAPRTSQRIRKP-PSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPKYQSF 787
V+ P R+P P+ + D C + D P L P Q
Sbjct: 805 VVVPPLLTYHRRPRPTLVPDDSCH--APDPAPTAD-----------------LPPPSQPL 845
Query: 788 VMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVK 847
+ + EA+ H WR+AM E+ AL ++ TW LV P +GC+WVY VK
Sbjct: 846 AL---------QKGEALSHSGWRQAMVDEMSALHKSGTWELVSLPAGKSTVGCRWVYAVK 896
Query: 848 YKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVD 907
DG ++R KARLV KGYTQ+ G+D+ DTF+PVAK+ ++R+ L++ A + W LHQLD+
Sbjct: 897 IGPDGQVDRLKARLVAKGYTQIFGLDYSDTFAPVAKIASVRLFLSMAAVRHWPLHQLDIK 956
Query: 908 NAFLHASLDEQIYMTIPQGLVCN--KANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGY 965
NAFLH L+E++YM P G V ++ VC L++SLYGLKQ+ R WF S +++ G
Sbjct: 957 NAFLHGDLEEEVYMEQPPGFVAQGESSSLVCRLRRSLYGLKQSPRAWFGKFSTVIQEFGM 1016
Query: 966 KQSNADHTLYIKASSGSFTA-LLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKY 1024
+S ADH+++ + S+ S L++Y DD+++ GND I +K L F+ KDLG KY
Sbjct: 1017 TRSGADHSVFYRHSAPSRCIYLVVYVDDIVITGNDQDGITDLKQHLFKHFQTKDLGRLKY 1076
Query: 1025 FLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSY 1084
FLG+E+A+S SGIV++QRKYAL ++ ++G + +PV TPMD + KL G PL++ Y
Sbjct: 1077 FLGIEVAQSRSGIVISQRKYALDILEETGMMGCRPVDTPMDPNVKLLPGQGEPLSNPERY 1136
Query: 1085 RRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASS 1144
RRLVG+L YL TRPDI+F V+ +SQF+++P D H +A R+L+Y+K +PG GL +
Sbjct: 1137 RRLVGKLNYLTVTRPDISFPVSVVSQFMTSPCDSHWEAVVRILRYIKSAPGKGLLFEDQG 1196
Query: 1145 STTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTV 1204
+ ++D+DWAG R+S +GYC+ +G +L+SW+SKKQ+ +RSS ESEYRAMAT
Sbjct: 1197 HEHIIGYTDADWAGSPSDRRSTSGYCVLVGGNLVSWKSKKQNVVARSSAESEYRAMATAT 1256
Query: 1205 CEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQG 1264
CE+ W+ LL +L ++ + DNQ+A+HIA NP +HERTKHIE+DCH VREK+ G
Sbjct: 1257 CELVWIKQLLGELKFGKVDKMELVCDNQAALHIASNPVFHERTKHIEIDCHFVREKILSG 1316
Query: 1265 LVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLP 1305
+ + + Q AD+FTKSLT +KLG D++ P
Sbjct: 1317 DIVTKFVKSNDQLADIFTKSLTCPRINYICNKLGTYDLYAP 1357
>pir||F86470 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989049|gb|AAG10812.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1404
Score = 557 bits (1435), Expect = e-156
Identities = 308/795 (38%), Positives = 456/795 (56%), Gaps = 46/795 (5%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN + ERK++H++ VAR+++F +P FW AV A YLINR PT VL + PF++L
Sbjct: 607 PQQNGVAERKNRHLMEVARSMMFHTSVPKRFWGDAVLTACYLINRTPTKVLSDLSPFEVL 666
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
NT P I +L++FG +CFV R K D ++TKC+FLG+ KG+ +D I
Sbjct: 667 NNTKPFIDHLRVFGCVCFVLIPGEQRSKLDAKSTKCMFLGYSTTQKGYKCFDPTKNRTFI 726
Query: 674 SRNVTFHEHNPFKPLDS-----DLTPTQAFPTTLPPIFDDDIPVPATVQAQEPP------ 722
SR+V F E+ + DLT + + D + +T Q P
Sbjct: 727 SRDVKFLENQDYNNKKDWENLKDLTHSTSDRVETLKFLLDHLGNDSTSTTQHQPEMTQDQ 786
Query: 723 --VNNQNQVIAPRTSQR---IRKPPSYLQDY--HCTLLSSDSV-------------PITS 762
+N +N+ ++ + + +++ P Q++ H + DS P+
Sbjct: 787 EDLNQENEEVSLQHQENLTHVQEDPPNTQEHSEHVQEIQDDSSEDEEPTQVLPPPPPLRR 846
Query: 763 S-----------STGINYPLSKVLSYDHLNPKYQSFVMNISSSLEPTRFSEAVKHECWRK 811
S S + +P S + +Q+F+ IS P + EA++ + WR
Sbjct: 847 STRIRRKKEFFNSNAVAHPFQATCSLALVPLDHQAFLSKISEHWIPQTYEEAMEVKEWRD 906
Query: 812 AMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEG 871
A+ EI A++RN TW D P K + +WV+ +KYK +G IERYK RLV +G+TQ G
Sbjct: 907 AIADEINAMKRNHTWDEDDLPKGKKTVSSRWVFTIKYKSNGDIERYKTRLVARGFTQTYG 966
Query: 872 VDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCN- 930
D+ +TF+PVAK+ T+RV+LAL + W L Q+DV NAFL L++ +YMT P GL
Sbjct: 967 SDYMETFAPVAKLHTVRVVLALATNLSWGLWQMDVKNAFLQGELEDDVYMTPPPGLEDTI 1026
Query: 931 KANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYA 990
++V L+K++YGLKQ+ R W++ LS +LK G+K+S +DHTL+ S +L+Y
Sbjct: 1027 PCDKVLRLRKAIYGLKQSPRAWYHKLSRTLKDHGFKKSESDHTLFTLQSPQGIVVVLIYV 1086
Query: 991 DDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLIS 1050
DD+++ G++ I K+ L F IKDLGE KYFLG+E+ RS +G+ L+QRKY L L++
Sbjct: 1087 DDLIITGDNKDGIDSTKTFLKSCFDIKDLGELKYFLGIEVCRSNAGLFLSQRKYTLDLLN 1146
Query: 1051 DSGHLASKPVSTPMDNSQKL---GTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQ 1107
++G + +KP TP+++ K+ G D YR+LVG+L+YL TRPDI FAVNQ
Sbjct: 1147 ETGFMDAKPARTPLEDGYKVNRKGEKEDEKFGDAPLYRKLVGKLIYLTNTRPDICFAVNQ 1206
Query: 1108 LSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSIT 1167
+SQ + P H R+L+YLKGS G G++ +SST + + D+D+AG R+S T
Sbjct: 1207 VSQHMKVPMVYHWNMVERILRYLKGSSGQGIWMGKNSSTEIVGYCDADYAGDRGDRRSKT 1266
Query: 1168 GYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSM 1227
GYC F+G +L +W++KKQ S SS ESEYRAM E+ WL LL+DL Q P +M
Sbjct: 1267 GYCTFIGGNLATWKTKKQKVVSCSSAESEYRAMRKLTNELTWLKALLKDLGIEQHMPITM 1326
Query: 1228 FRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTP 1287
DN++A++IA N +HERTKHIE+DCH VREK+ +G+ + Q AD+FTK+ +
Sbjct: 1327 HCDNKAAIYIASNSVFHERTKHIEVDCHKVREKIIEGVTLPCYTRSEDQLADIFTKAASL 1386
Query: 1288 APFKTCISKLGMKDI 1302
KLG+ D+
Sbjct: 1387 KVCNFIHGKLGLVDL 1401
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 536 bits (1380), Expect = e-150
Identities = 303/755 (40%), Positives = 427/755 (56%), Gaps = 37/755 (4%)
Query: 555 QQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQILY 614
QQN ER + + R +L + P++FW+ A+ A++LINR P + P+Q+L
Sbjct: 653 QQNGKAERILRTINDCVRTMLVHSAAPLSFWAEALQTAMHLINRRPCRATGSLKPYQLLL 712
Query: 615 NTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISIS 674
P +L++FG LC+ +T+ + K PR+ C+F+G+ D +G+ YD+ SR + S
Sbjct: 713 GAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLACVFIGYPADHRGYRCYDMVSRRVFTS 772
Query: 675 RNVTFHEHN-PFKPLDSDLTPTQAFPTTLPPIFDDD----IPVPA-----------TVQA 718
R+VTF E PF+ S P + P PP DD +P PA A
Sbjct: 773 RHVTFVEDVFPFRDAPS---PRPSAPP--PPDHGDDTIVLLPAPAQHVVTPVGTAPAHDA 827
Query: 719 QEPPVNNQNQVIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYD 778
PP + + + + PPS + T + GI+ P
Sbjct: 828 ASPPSPASSTPSSAAPAHDVAPPPSPETSSPASASPPRHAMTTRARAGISKP-------- 879
Query: 779 HLNPKYQSFVMNISSSLEPTRFSE--AVKHECWRKAMDQEIEALERNQTWILVDKPPDSK 836
NP+Y M +S+L PT S A++ WR AM E +AL N+TW LV +PP ++
Sbjct: 880 --NPRY---AMTATSTLSPTPSSVRVALRDPNWRAAMQAEFDALLANRTWTLVPRPPGAR 934
Query: 837 PIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCAS 896
I KWV+K K DGS+++YKAR VV+G+ Q GVDF +TFSPV K T+R +L L +S
Sbjct: 935 IITGKWVFKTKLHADGSLDKYKARWVVRGFNQRPGVDFGETFSPVVKPATIRTVLTLISS 994
Query: 897 Q*WHLHQLDVDNAFLHASLDEQIYMTIPQGLV-CNKANQVCLLQKSLYGLKQASRQWFNT 955
+ W HQLDV NAFLH L E++ P G + VCLL +SLYGL+QA R WF
Sbjct: 995 KQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRSLYGLRQAPRAWFKR 1054
Query: 956 LSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFR 1015
+ LG+ QS AD +L++ LLLY DD++L+ + +Q + L +F+
Sbjct: 1055 FADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFK 1114
Query: 1016 IKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIG 1075
+KD+G KYFLG+E+ R+ G VL+Q KYA ++ +G K V+TP D KL ++ G
Sbjct: 1115 VKDMGPLKYFLGIEVQRTADGFVLSQSKYATDVLERAGMANCKAVATPADAKPKLSSDEG 1174
Query: 1076 TPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPG 1135
D YR + G L YL TRPDI +AV Q+ + AP + H R+L+Y+KG+
Sbjct: 1175 PLFQDSSWYRSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAA 1234
Query: 1136 SGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCES 1195
GL AS+S TLTAFSD+DWAGC DTR+S +G+C+FLGDSLISW SK+Q+T SRSS E+
Sbjct: 1235 FGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEA 1294
Query: 1196 EYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCH 1255
EYR +A V E WL LL +L+ T + DN S+++++ NP +H+RTKHIELD H
Sbjct: 1295 EYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIH 1354
Query: 1256 IVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPF 1290
VREK+ G + +LPI + Q ADVFTK L + F
Sbjct: 1355 FVREKVALGELRVLPIPSAHQFADVFTKGLPSSMF 1389
>emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|3021268|emb|CAA18463.1|
putative protein [Arabidopsis thaliana]
gi|7485945|pir||T04833 hypothetical protein F21P8.50 -
Arabidopsis thaliana
Length = 1240
Score = 535 bits (1379), Expect = e-150
Identities = 276/577 (47%), Positives = 377/577 (64%), Gaps = 24/577 (4%)
Query: 721 PPVNNQNQVIAP--RTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYD 778
P N QN V P TS R + P+YLQDY+C ++S ++ + +S+ LSY+
Sbjct: 18 PSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTI----------HDISQFLSYE 67
Query: 779 HLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPI 838
++P Y SF++ I+ + EP+ ++EA + W AMD EI A+E TW + PP+ KPI
Sbjct: 68 KVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPI 127
Query: 839 GCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ* 898
GCKWVYK+KY DG+IERYKARLV KGYTQ EG+DF +TFSPV K+T++++ILA+ A
Sbjct: 128 GCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYN 187
Query: 899 WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKA-----NQVCLLQKSLYGLKQASRQWF 953
+ LHQLD+ NAFL+ LDE+IYM +P G + N VC L+KS+YGLKQASRQWF
Sbjct: 188 FTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWF 247
Query: 954 NTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQ 1013
S +L G+ QS++DHT ++K ++ F +L+Y DD+++ N+ + +KS L
Sbjct: 248 LKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSC 307
Query: 1014 FRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTN 1073
F+++DLG KYFLGLEIARS +GI + QRKYAL L+ ++G L KP S PMD S +
Sbjct: 308 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 367
Query: 1074 IGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGS 1133
G D +YRRL+GRL+YL TR DI+FAVN+LSQF AP H+QA ++L Y+KG+
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGT 427
Query: 1134 PGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSC 1193
G GLFY + + L FSD+ + C DTR+S GYC+FLG SLISW+SKKQ S+SS
Sbjct: 428 VGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSA 487
Query: 1194 ESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELD 1253
E+EYRA++ E+ WL ++L P PT +F DN +A+HIA N +HERTKHIE D
Sbjct: 488 EAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 547
Query: 1254 CHIVREKLQQGLVHLLPISTTLQT---ADVFTKSLTP 1287
CH VRE+ V+ +S + Q D FT+ L+P
Sbjct: 548 CHSVRER----SVYQATLSYSFQAYDEQDGFTEYLSP 580
>ref|NP_194047.2| protein kinase family protein [Arabidopsis thaliana]
Length = 1262
Score = 535 bits (1379), Expect = e-150
Identities = 276/577 (47%), Positives = 377/577 (64%), Gaps = 24/577 (4%)
Query: 721 PPVNNQNQVIAP--RTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYD 778
P N QN V P TS R + P+YLQDY+C ++S ++ + +S+ LSY+
Sbjct: 18 PSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTI----------HDISQFLSYE 67
Query: 779 HLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPI 838
++P Y SF++ I+ + EP+ ++EA + W AMD EI A+E TW + PP+ KPI
Sbjct: 68 KVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPI 127
Query: 839 GCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ* 898
GCKWVYK+KY DG+IERYKARLV KGYTQ EG+DF +TFSPV K+T++++ILA+ A
Sbjct: 128 GCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYN 187
Query: 899 WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKA-----NQVCLLQKSLYGLKQASRQWF 953
+ LHQLD+ NAFL+ LDE+IYM +P G + N VC L+KS+YGLKQASRQWF
Sbjct: 188 FTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWF 247
Query: 954 NTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQ 1013
S +L G+ QS++DHT ++K ++ F +L+Y DD+++ N+ + +KS L
Sbjct: 248 LKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSC 307
Query: 1014 FRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTN 1073
F+++DLG KYFLGLEIARS +GI + QRKYAL L+ ++G L KP S PMD S +
Sbjct: 308 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 367
Query: 1074 IGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGS 1133
G D +YRRL+GRL+YL TR DI+FAVN+LSQF AP H+QA ++L Y+KG+
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGT 427
Query: 1134 PGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSC 1193
G GLFY + + L FSD+ + C DTR+S GYC+FLG SLISW+SKKQ S+SS
Sbjct: 428 VGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSA 487
Query: 1194 ESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELD 1253
E+EYRA++ E+ WL ++L P PT +F DN +A+HIA N +HERTKHIE D
Sbjct: 488 EAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 547
Query: 1254 CHIVREKLQQGLVHLLPISTTLQT---ADVFTKSLTP 1287
CH VRE+ V+ +S + Q D FT+ L+P
Sbjct: 548 CHSVRER----SVYQATLSYSFQAYDEQDGFTEYLSP 580
>dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana]
Length = 509
Score = 527 bits (1357), Expect = e-147
Identities = 255/498 (51%), Positives = 352/498 (70%), Gaps = 4/498 (0%)
Query: 812 AMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEG 871
AM+ E+ +E N+TW +V PP+ +GCKWVY ++Y DGSIERYKARLV KG+TQ EG
Sbjct: 2 AMNVELGVMELNKTWSVVSLPPNKNVVGCKWVYTIEYNADGSIERYKARLVAKGFTQQEG 61
Query: 872 VDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNK 931
VD+ DTFSPVAK+ +++++L L A + W Q+DV NAFLH+ L+E+IYM++ QG +
Sbjct: 62 VDYFDTFSPVAKLASVKLVLGLVARKGWSTTQMDVTNAFLHSDLEEEIYMSLAQGYTPSS 121
Query: 932 A----NQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALL 987
N VC L KS+YGLKQASRQW+ LS +L G++QS D+TL++K +S + A+L
Sbjct: 122 GSLPPNPVCRLHKSIYGLKQASRQWYKCLSQTLLDDGFQQSYVDNTLFVKITSTAIVAML 181
Query: 988 LYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 1047
+Y DD+L+ N+ + VKS L +++IKDLG AK+FLGLEIAR++ GI + QRKY L
Sbjct: 182 IYVDDILIVSNNDEVVCAVKSVLAARYKIKDLGPAKFFLGLEIARNSDGISICQRKYCLD 241
Query: 1048 LISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQ 1107
L+++SG L KP S PMD L ++GT L D YR L+GRLLYL TRPDITFAV+
Sbjct: 242 LLANSGLLGCKPKSVPMDPKVVLTKDLGTLLEDGRPYRELIGRLLYLCVTRPDITFAVHN 301
Query: 1108 LSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSIT 1167
LSQFLS PT++H AAH+VLKYLK +PG GLF A + L F+D+DW C+D+R+S++
Sbjct: 302 LSQFLSCPTNVHLHAAHQVLKYLKNNPGQGLFSSAGTELYLNGFADADWGTCLDSRRSVS 361
Query: 1168 GYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSM 1227
G C+FLG SLI+W+SKKQ AS SS E+EYR+MA E+ WL +L+DL+ +
Sbjct: 362 GVCVFLGTSLITWKSKKQEVASGSSTEAEYRSMAVATKELLWLAQMLKDLHVEMEFQVKL 421
Query: 1228 FRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTP 1287
F DN+SAMHIA+N +HERTKH+E+DCH R++++ G + +L + T Q AD+ TK+L P
Sbjct: 422 FCDNKSAMHIANNSVFHERTKHVEIDCHTTRDRVKNGFLKVLHVDTENQLADILTKALQP 481
Query: 1288 APFKTCISKLGMKDIHLP 1305
PF++ + +L + + LP
Sbjct: 482 GPFRSILGRLSVSSLFLP 499
>gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411253|pir||A84480 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1102
Score = 524 bits (1350), Expect = e-147
Identities = 308/759 (40%), Positives = 434/759 (56%), Gaps = 67/759 (8%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQNA VERKH+H+++VAR LFQ + P P+PVL K P+++L
Sbjct: 403 PQQNARVERKHRHILNVARTCLFQGNFPT-----------------PSPVLKGKTPYEVL 445
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
+ P L+ FG LC+ + KF R+ KCIF+G+ +T T+D SI
Sbjct: 446 FGKQPSYDMLRTFGCLCYAHIRPRDKDKFASRSRKCIFIGYPHETATPNTHD------SI 499
Query: 674 SRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQVIAPR 733
T + N P +TP P + I I V +N + +P
Sbjct: 500 DPTSTSSDENNTPP--EPVTPQAEQPHSPSSISSPHI-VHNKGSVHSRHLNEDHDSSSPG 556
Query: 734 TSQRIRK------PPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPKYQSF 787
+ + K PP YL+DY + S P TSS + +S +S +H+ +F
Sbjct: 557 LPELLGKGHRPKHPPVYLKDYVAHKVHSS--PHTSSPGLSDSNVSPTVSANHI-----AF 609
Query: 788 VMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVK 847
+ I S E F + V + W AM +EIEALE N TW + D P K I KWVYK+K
Sbjct: 610 MAAILDSNEQNHFKDDVLIKEWCDAMQKEIEALEANHTWDVTDLPHGKKAISSKWVYKLK 669
Query: 848 YKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVD 907
+ DG++ER+KARLVV G Q EG+DF++TF+PVAKMTT+R++LA+ A++ W + Q+DV
Sbjct: 670 FNSDGTLERHKARLVVMGNHQKEGIDFKETFAPVAKMTTVRLLLAVAAAKDWDVFQMDVH 729
Query: 908 NAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQ 967
NAFLH L+ Q+SLYGLKQA R WF LS +L+KLG+ Q
Sbjct: 730 NAFLHGDLE----------------------QESLYGLKQAPRCWFAKLSTALRKLGFTQ 767
Query: 968 SNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLG 1027
S D++L+ G+ L+Y DD ++ GN++ I K LH F +KDLG+ KYFLG
Sbjct: 768 SYEDYSLFSLNRDGTVIHFLVYVDDFIIVGNNLKAIDHFKEHLHKCFHMKDLGKLKYFLG 827
Query: 1028 LEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDI-GSYRR 1086
LE++R G L+Q+KYAL +I+++G L KP + PM+ KLG+ I +P+ D YRR
Sbjct: 828 LEVSRGADGFCLSQQKYALDIINEAGLLGYKPSAVPMELHHKLGS-ISSPVFDNPAQYRR 886
Query: 1087 LVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSST 1146
LV R +YL TRPD+++AV+ LSQF+ P + H A R+++YLKGSP G+ + +
Sbjct: 887 LVDRFIYLTITRPDLSYAVHILSQFMQTPLEAHWHATLRLVRYLKGSPDQGILLRSDRAL 946
Query: 1147 TLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCE 1206
+LTA+ DSD+ C TR+S++ Y L+LGD+ ISW++KKQ T S SS E+EYRAMA T+ E
Sbjct: 947 SLTAYCDSDYNPCPRTRRSLSAYVLYLGDTPISWKTKKQDTVSSSSAEAEYRAMAYTLKE 1006
Query: 1207 IQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLV 1266
I+WL L+ L P +F D+Q+A+HIA NP +HERTKHIE DCH VR+ + ++
Sbjct: 1007 IKWLKALMTTLGVDHTQPILLFCDSQAAIHIAANPVFHERTKHIEKDCHQVRDAVTDKVI 1066
Query: 1267 HLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLP 1305
ISTT D+ TK+L F+ +S LG + LP
Sbjct: 1067 STPHISTT----DLLTKALPRPTFERLLSTLGTCNYDLP 1101
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.339 0.148 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,992,783,214
Number of Sequences: 2540612
Number of extensions: 78229593
Number of successful extensions: 265427
Number of sequences better than 10.0: 1714
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 259389
Number of HSP's gapped (non-prelim): 2870
length of query: 1310
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1170
effective length of database: 507,674,714
effective search space: 593979415380
effective search space used: 593979415380
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0033b.8