BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.5
(88 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42386.1| putative Rab family GTP-binding protein (Ara6) [A... 76 2e-13
emb|CAA45352.1| Nt-rab5 [Nicotiana tabacum] gi|266879|sp|P29687|... 72 3e-12
emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichori... 72 4e-12
emb|CAB57219.1| GTP binding protein [Cichorium intybus x Cichori... 72 4e-12
emb|CAA98167.1| RAB5B [Lotus corniculatus var. japonicus] 72 5e-12
emb|CAA85733.1| guanine nucleotide regulatory protein [Vicia fab... 72 5e-12
gb|AAS21028.1| ras-related protein [Hyacinthus orientalis] 71 6e-12
emb|CAA98166.1| RAB5A [Lotus corniculatus var. japonicus] 70 1e-11
emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichori... 70 1e-11
emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichori... 70 1e-11
emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichori... 70 1e-11
emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichori... 70 1e-11
ref|XP_469184.1| putative small GTP-binding protein [Oryza sativ... 70 2e-11
dbj|BAD46052.1| putative GTP binding protein [Oryza sativa (japo... 70 2e-11
emb|CAA06922.1| small GTP-binding protein [Mesembryanthemum crys... 69 2e-11
emb|CAB57221.1| GTP binding protein [Cichorium intybus x Cichori... 69 4e-11
emb|CAA50609.1| ras-related GTP-binding protein [Nicotiana tabac... 68 5e-11
emb|CAA46112.1| small GTP binding protein [Nicotiana plumbaginif... 68 7e-11
emb|CAB41100.1| small GTP-binding protein-like (fragment) [Arabi... 67 9e-11
emb|CAD26971.1| Rab-related small GTP-binding protein [Simmondsi... 67 1e-10
>gb|AAO42386.1| putative Rab family GTP-binding protein (Ara6) [Arabidopsis
thaliana] gi|27754459|gb|AAO22677.1| putative Rab family
GTP-binding protein (Ara6) [Arabidopsis thaliana]
gi|18410144|ref|NP_567008.1| Rab GTPase (ARA6)
[Arabidopsis thaliana] gi|13160603|dbj|BAB32953.1| Ara6
[Arabidopsis thaliana]
Length = 202
Score = 76.3 bits (186), Expect = 2e-13
Identities = 37/63 (58%), Positives = 47/63 (73%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGRGFESPG 63
+VMALV NK+DL KREV E+G + A++NGMF++ETSAKT +NIN LF EIG+ P
Sbjct: 140 IVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLPRPA 199
Query: 64 RSS 66
SS
Sbjct: 200 PSS 202
>emb|CAA45352.1| Nt-rab5 [Nicotiana tabacum] gi|266879|sp|P29687|RAB5_TOBAC
Ras-related protein Rab5
Length = 200
Score = 72.4 bits (176), Expect = 3e-12
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V EE +A+ENG+F+METSAKT N+ND+F+EI +
Sbjct: 116 MVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAK 169
>emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 72.0 bits (175), Expect = 4e-12
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KREV EE +A+ENG+F+METSAKT N+ND+F EI +
Sbjct: 112 MVMALAGNKADLEDKREVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAK 165
>emb|CAB57219.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 72.0 bits (175), Expect = 4e-12
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V +EE +A+ENG+F+METSAKT N+ND+F EI +
Sbjct: 116 MVMALAGNKADLEDKRKVTVEEARVYAEENGLFFMETSAKTAANVNDVFHEIAK 169
>emb|CAA98167.1| RAB5B [Lotus corniculatus var. japonicus]
Length = 200
Score = 71.6 bits (174), Expect = 5e-12
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGRGFESP 62
+VMALV NK+DL KREV +++G +A++NGMF++ETSAKT +NIN+LF EI + P
Sbjct: 139 IVMALVGNKADLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRP 197
>emb|CAA85733.1| guanine nucleotide regulatory protein [Vicia faba]
gi|1076545|pir||S49225 guanine nucleotide regulatory
protein - fava bean gi|1098297|prf||2115367E small
GTP-binding protein
Length = 200
Score = 71.6 bits (174), Expect = 5e-12
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NKSDLE KR+V EE +A+ENG+F+METSAK+ N+ND+F+EI +
Sbjct: 116 MVMALTGNKSDLEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFYEIAK 169
>gb|AAS21028.1| ras-related protein [Hyacinthus orientalis]
Length = 96
Score = 71.2 bits (173), Expect = 6e-12
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V ALV NKSDLE KR+V EE +A ENG+F++ETSAKT N+ND+F+EI R
Sbjct: 13 MVTALVGNKSDLEEKRKVAAEEAHAYANENGLFFLETSAKTAINVNDVFYEIAR 66
>emb|CAA98166.1| RAB5A [Lotus corniculatus var. japonicus]
Length = 200
Score = 70.5 bits (171), Expect = 1e-11
Identities = 31/54 (57%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMA NKSDLE KR+V +E +A+ENG+F+METSAKT N+ND+F+EI +
Sbjct: 116 MVMAFAGNKSDLEDKRKVTADEARVYAEENGLFFMETSAKTAANVNDVFYEIAK 169
>emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V EE +A+ENG+F+METSAKT N+ND+F EI +
Sbjct: 116 MVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAK 169
>emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V EE +A+ENG+F+METSAKT N+ND+F EI +
Sbjct: 116 MVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAK 169
>emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V EE +A+ENG+F+METSAKT N+ND+F EI +
Sbjct: 112 MVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAK 165
>emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V EE +A+ENG+F+METSAKT N+ND+F EI +
Sbjct: 116 MVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAK 169
>ref|XP_469184.1| putative small GTP-binding protein [Oryza sativa (japonica
cultivar-group)] gi|40538929|gb|AAR87186.1| putative
small GTP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 203
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/53 (58%), Positives = 42/53 (78%)
Query: 5 VMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
V+AL NK+DL R+V+IEE +AQENG+F+METSAKT N+ND+F+EI +
Sbjct: 118 VVALAGNKADLLETRQVQIEEAKTYAQENGLFFMETSAKTATNVNDIFYEIAK 170
>dbj|BAD46052.1| putative GTP binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 226
Score = 69.7 bits (169), Expect = 2e-11
Identities = 30/58 (51%), Positives = 46/58 (78%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGRGFES 61
LVMALV NK DLE KR+V +E ++A+ NG+F++ETSAKT +N+ +LF+E+G+ + +
Sbjct: 97 LVMALVGNKVDLEEKRQVGTQEAMEYAERNGLFFIETSAKTSQNVTELFYELGKHYRN 154
>emb|CAA06922.1| small GTP-binding protein [Mesembryanthemum crystallinum]
gi|7438400|pir||T12437 small GTP-binding protein -
common ice plant
Length = 201
Score = 69.3 bits (168), Expect = 2e-11
Identities = 30/54 (55%), Positives = 45/54 (82%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
++MALV NK+DL+ +REV ++G ++A++NGMF++ETSAKT +NIN LF EI +
Sbjct: 140 IIMALVGNKADLQERREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193
>emb|CAB57221.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 126
Score = 68.6 bits (166), Expect = 4e-11
Identities = 31/54 (57%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V EE +A+ENG+F+METSAKT ++ND+F EI +
Sbjct: 42 MVMALAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAADVNDVFHEIAK 95
>emb|CAA50609.1| ras-related GTP-binding protein [Nicotiana tabacum]
gi|421941|pir||S33160 GTP-binding protein, ras-related -
common tobacco
Length = 200
Score = 68.2 bits (165), Expect = 5e-11
Identities = 31/52 (59%), Positives = 40/52 (76%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEI 55
+VMAL NK+DL R+V EE +AQENG+F+METSAKT N+ND+F+EI
Sbjct: 116 MVMALAGNKADLLDARKVAAEEAQTYAQENGLFFMETSAKTASNVNDIFYEI 167
>emb|CAA46112.1| small GTP binding protein [Nicotiana plumbaginifolia]
gi|400977|sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 67.8 bits (164), Expect = 7e-11
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE +R+V EE +A+ENG+F+METSAKT N+N +F+EI +
Sbjct: 116 MVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAK 169
>emb|CAB41100.1| small GTP-binding protein-like (fragment) [Arabidopsis thaliana]
gi|7438434|pir||T06736 GTP-binding protein F28P10.180 -
Arabidopsis thaliana (fragment)
Length = 224
Score = 67.4 bits (163), Expect = 9e-11
Identities = 31/49 (63%), Positives = 40/49 (81%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLF 52
+VMALV NK+DL KREV E+G + A++NGMF++ETSAKT +NIN LF
Sbjct: 138 IVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKTADNINQLF 186
>emb|CAD26971.1| Rab-related small GTP-binding protein [Simmondsia chinensis]
Length = 200
Score = 67.0 bits (162), Expect = 1e-10
Identities = 29/54 (53%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE +R V EE +A++NG+F+METSAKT N+N++F+EI +
Sbjct: 116 MVMALAGNKADLEDRRSVPAEEARIYAEDNGLFFMETSAKTALNVNEIFYEIAK 169
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.311 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,943,865
Number of Sequences: 2540612
Number of extensions: 5325451
Number of successful extensions: 11784
Number of sequences better than 10.0: 2157
Number of HSP's better than 10.0 without gapping: 1908
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 9791
Number of HSP's gapped (non-prelim): 2161
length of query: 88
length of database: 863,360,394
effective HSP length: 64
effective length of query: 24
effective length of database: 700,761,226
effective search space: 16818269424
effective search space used: 16818269424
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0033b.5