BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0032.10
         (216 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAH80776.1| conserved hypothetical protein [Plasmodium chaba...    35  1.9
gb|AAF79682.1| F9C16.18 [Arabidopsis thaliana]                         34  3.2
gb|AAF79665.1| F9C16.13 [Arabidopsis thaliana] gi|25405860|pir||...    34  3.2
ref|NP_175065.1| hypothetical protein [Arabidopsis thaliana]           34  3.2
ref|ZP_00327150.1| COG1020: Non-ribosomal peptide synthetase mod...    33  4.2
gb|AAP85772.1| HypD1 [Ralstonia eutropha] gi|38637684|ref|NP_942...    33  7.2
ref|ZP_00464775.1| Xanthine/uracil permease family [Burkholderia...    32  9.4

>emb|CAH80776.1| conserved hypothetical protein [Plasmodium chabaudi]
          Length = 755

 Score = 34.7 bits (78), Expect = 1.9
 Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 4/66 (6%)

Query: 104 STAVEIVIGLEIPQVIIVCDSLDVIRLIIDP--VKFVKSE--KALYEKNFARTVKVRPKR 159
           S  VE V  L    + I+ D LD +R + +P  +KF+ SE  K  YE NF +T  + P  
Sbjct: 451 SLYVESVKYLHFHILKIIIDELDELRKVHEPQYIKFILSESYKKNYESNFYKTSNIHPSM 510

Query: 160 TWKVRP 165
              ++P
Sbjct: 511 NEYIQP 516


>gb|AAF79682.1| F9C16.18 [Arabidopsis thaliana]
          Length = 196

 Score = 33.9 bits (76), Expect = 3.2
 Identities = 13/21 (61%), Positives = 17/21 (80%)

Query: 70  GVLRDAMGQWIKGFSINMGSR 90
           GVLRD  G+W+ GFS+N+G R
Sbjct: 85  GVLRDREGEWLGGFSLNIGRR 105


>gb|AAF79665.1| F9C16.13 [Arabidopsis thaliana] gi|25405860|pir||F96503 protein
           F9C16.13 [imported] - Arabidopsis thaliana
          Length = 1172

 Score = 33.9 bits (76), Expect = 3.2
 Identities = 13/21 (61%), Positives = 17/21 (80%)

Query: 70  GVLRDAMGQWIKGFSINMGSR 90
           GVLRD  G+W+ GFS+N+G R
Sbjct: 233 GVLRDREGEWLGGFSLNIGRR 253


>ref|NP_175065.1| hypothetical protein [Arabidopsis thaliana]
          Length = 126

 Score = 33.9 bits (76), Expect = 3.2
 Identities = 13/21 (61%), Positives = 17/21 (80%)

Query: 70  GVLRDAMGQWIKGFSINMGSR 90
           GVLRD  G+W+ GFS+N+G R
Sbjct: 85  GVLRDREGEWLGGFSLNIGRR 105


>ref|ZP_00327150.1| COG1020: Non-ribosomal peptide synthetase modules and related
           proteins [Trichodesmium erythraeum IMS101]
          Length = 1331

 Score = 33.5 bits (75), Expect = 4.2
 Identities = 20/109 (18%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 93  ANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVIRLIIDPVKFVKSEKALYEKNFART 152
           AN+FL +F     A +I I +++   + +    + +++++     ++S  +  + N    
Sbjct: 20  ANWFLYKFNPTGLADKISIAIQMVNSVDIPTVKNTLQILMKRHSILRSVYSEKDGNIISQ 79

Query: 153 VKVRPKRTWKVRPSRTWKNLQIPTPYSSR----FTIRSGAVWKIGQFFI 197
           ++   +  W+   + +W N+++    S+R    F + +G V++   F I
Sbjct: 80  IRENVEIDWEKIDAYSWNNIELNEQLSARMRLPFNLETGGVFRACLFCI 128


>gb|AAP85772.1| HypD1 [Ralstonia eutropha] gi|38637684|ref|NP_942658.1| HypD1
           [Cupriavidus necator] gi|38775|emb|CAA49734.1| HYPD
           [Ralstonia eutropha] gi|321749|pir||S29978 hypD protein
           - Alcaligenes eutrophus gi|400033|sp|P31903|HYPD_ALCEU
           Hydrogenase expression/formation protein hypD
          Length = 379

 Score = 32.7 bits (73), Expect = 7.2
 Identities = 30/104 (28%), Positives = 45/104 (42%), Gaps = 15/104 (14%)

Query: 116 PQVIIVCDSLDVIRLIIDPVKFVKSEKALYEKNFARTV--------KVRPKRTWKVRPSR 167
           P VI   + LDV++ I+  V+ V S +A  E  F R V        +      +++RPS 
Sbjct: 223 PVVIAGFEPLDVMQAILMLVRQVNSGRAEVENEFVRAVTRDGNESAQAMVSEVFELRPSF 282

Query: 168 TWKNLQIPTPYSSRFTIRSGAVWKIGQFF------IPDAKSTNC 205
            W+ L    PYS+       A +   Q F      +PD K+  C
Sbjct: 283 EWRGLG-EVPYSALRIRAQFARFDAEQRFDLRYRPVPDNKACEC 325


>ref|ZP_00464775.1| Xanthine/uracil permease family [Burkholderia cenocepacia HI2424]
           gi|67661074|ref|ZP_00458403.1| Xanthine/uracil permease
           family [Burkholderia cenocepacia AU 1054]
           gi|67098883|gb|EAM16074.1| Xanthine/uracil permease
           family [Burkholderia cenocepacia HI2424]
           gi|67091334|gb|EAM08914.1| Xanthine/uracil permease
           family [Burkholderia cenocepacia AU 1054]
          Length = 462

 Score = 32.3 bits (72), Expect = 9.4
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 39  SGFIKSLGM-EQHVDVYVARLASVIGIYMRVVGVLRDAMGQWIKGFSINM-------GSR 90
           +G I+  G+  +HV +++A +  V+G++  V GVL+      + G ++ M       G  
Sbjct: 338 NGVIQITGVASRHVGIWIAGMLVVLGLFPVVAGVLQAVPEPVLGGAAMVMFGAVAASGIN 397

Query: 91  AYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSL 125
             A   L +   +  AV + +GL + QV  + +SL
Sbjct: 398 ILAGVHLDRRALLIIAVSLALGLGVSQVPDILNSL 432


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.322    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,569,085
Number of Sequences: 2540612
Number of extensions: 13087847
Number of successful extensions: 29436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29433
Number of HSP's gapped (non-prelim): 7
length of query: 216
length of database: 863,360,394
effective HSP length: 123
effective length of query: 93
effective length of database: 550,865,118
effective search space: 51230455974
effective search space used: 51230455974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)