BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0030.2
(82 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198122.1| 40S ribosomal protein S21 (RPS21C) [Arabidopsis... 148 3e-35
dbj|BAA02158.1| 40S subunit ribosomal protein [Oryza sativa (jap... 146 1e-34
gb|AAP44638.1| 40S subunit ribosomal protein [Oryza sativa (japo... 145 3e-34
emb|CAB88351.1| 40S ribosomal protein S21 homolog [Arabidopsis t... 144 4e-34
gb|AAM63744.1| 40S ribosomal protein S21 homolog [Arabidopsis th... 142 2e-33
emb|CAA67225.1| ribosomal protein S21 [Zea mays] gi|2500497|sp|Q... 140 6e-33
gb|AAU89141.1| 40S ribosomal protein S21, putative [Oryza sativa... 139 2e-32
emb|CAA70852.1| 40S ribosomal subunit protein S21 [Zea mays] gi|... 134 6e-31
emb|CAB57312.1| 40S ribosomal protein S21 [Cyanophora paradoxa] ... 107 8e-23
gb|EAA59088.1| hypothetical protein AN3823.2 [Aspergillus nidula... 106 2e-22
gb|EAL87454.1| Ribosomal protein S21e [Aspergillus fumigatus Af293] 102 2e-21
gb|AAS51481.1| ACR255Cp [Ashbya gossypii ATCC 10895] gi|45185941... 100 1e-20
emb|CAH02841.1| unnamed protein product [Kluyveromyces lactis NR... 99 2e-20
ref|XP_628995.1| 40S ribosomal protein S21 [Dictyostelium discoi... 98 6e-20
gb|AAK95204.1| 40S ribosomal protein S21 [Ictalurus punctatus] 95 4e-19
gb|AAH71475.1| Ribosomal protein S21 [Danio rerio] gi|29124635|g... 95 5e-19
ref|NP_012983.1| Protein component of the small (40S) ribosomal ... 94 7e-19
emb|CAA60819.1| unnamed protein product [Saccharomyces cerevisia... 94 7e-19
gb|AAX07666.1| 40S ribosomal protein S21-like protein [Magnaport... 94 7e-19
gb|AAP21828.1| ribosomal protein S21 [Branchiostoma belcheri tsi... 94 9e-19
>ref|NP_198122.1| 40S ribosomal protein S21 (RPS21C) [Arabidopsis thaliana]
Length = 85
Score = 148 bits (374), Expect = 3e-35
Identities = 66/82 (80%), Positives = 77/82 (93%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEGQ+TELYIPRKCSATNRLIT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
QGDADS +DRLWQKKK E KQ+
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQK 82
>dbj|BAA02158.1| 40S subunit ribosomal protein [Oryza sativa (japonica
cultivar-group)] gi|481227|pir||S38357 ribosomal
protein S21, cytosolic - rice
gi|548852|sp|P35687|RS21_ORYSA 40S ribosomal protein
S21
Length = 82
Score = 146 bits (369), Expect = 1e-34
Identities = 65/82 (79%), Positives = 80/82 (97%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEGQ+ +LY+PRKCSATNR+ITAKDHASVQINIGH+DE+G+Y+G+F+T+AL G+IRA
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
QGDADSA+DRLWQK+KAE+KQQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82
>gb|AAP44638.1| 40S subunit ribosomal protein [Oryza sativa (japonica
cultivar-group)] gi|50917601|ref|XP_469197.1| 40S
subunit ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 82
Score = 145 bits (365), Expect = 3e-34
Identities = 64/82 (78%), Positives = 79/82 (96%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEGQ+ +LY+PRKCS TNR+ITAKDHASVQINIGH+DE+G+Y+G+F+T+AL G+IRA
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
QGDADSA+DRLWQK+KAE+KQQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82
>emb|CAB88351.1| 40S ribosomal protein S21 homolog [Arabidopsis thaliana]
gi|20148437|gb|AAM10109.1| 40S ribosomal protein S21
homolog [Arabidopsis thaliana]
gi|17473933|gb|AAL38376.1| 40S ribosomal protein S21
homolog [Arabidopsis thaliana]
gi|15232356|ref|NP_190957.1| 40S ribosomal protein S21
(RPS21B) [Arabidopsis thaliana]
gi|27923842|sp|Q9M337|RS21B_ARATH 40S ribosomal protein
S21-2 gi|11276646|pir||T45929 40S ribosomal protein S21
homolog - Arabidopsis thaliana
Length = 82
Score = 144 bits (364), Expect = 4e-34
Identities = 63/82 (76%), Positives = 76/82 (91%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
M+N+ GQ+TELYIPRKCSATNR+IT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1 MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
QGDADS +DRLWQKKK E KQQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82
>gb|AAM63744.1| 40S ribosomal protein S21 homolog [Arabidopsis thaliana]
Length = 82
Score = 142 bits (358), Expect = 2e-33
Identities = 62/82 (75%), Positives = 75/82 (90%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
M+N+ GQ+TELYIP KCSATNR+IT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1 MENDAGQVTELYIPSKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
QGDADS +DRLWQKKK E KQQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82
>emb|CAA67225.1| ribosomal protein S21 [Zea mays] gi|2500497|sp|Q41852|RS21_MAIZE
40S ribosomal protein S21 gi|7440559|pir||T03945
ribosomal protein S21 - maize
Length = 81
Score = 140 bits (354), Expect = 6e-33
Identities = 63/81 (77%), Positives = 76/81 (93%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEG+ +LY+PRKCSATNR+ITAKDHASVQINIGHLD +G+Y+G F+T+AL G++RA
Sbjct: 1 MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQ 81
QGDADS++DRLWQKKKAEIKQ
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81
>gb|AAU89141.1| 40S ribosomal protein S21, putative [Oryza sativa (japonica
cultivar-group)]
Length = 119
Score = 139 bits (349), Expect = 2e-32
Identities = 61/79 (77%), Positives = 76/79 (95%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEGQ+ +LY+PRKCS TNR+ITAKDHASVQINIGH+DE+G+Y+G+F+T+AL G+IRA
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60
Query: 61 QGDADSAIDRLWQKKKAEI 79
QGDADSA+DRLWQK+KAE+
Sbjct: 61 QGDADSALDRLWQKRKAEL 79
>emb|CAA70852.1| 40S ribosomal subunit protein S21 [Zea mays]
gi|7440558|pir||T02717 ribosomal protein S21 - maize
Length = 81
Score = 134 bits (337), Expect = 6e-31
Identities = 61/81 (75%), Positives = 75/81 (92%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEG+ +LY+PRKCSATNR+ITAKDHASVQINIGHLD +G+Y+G F+T+AL G++RA
Sbjct: 1 MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQ 81
QGDADS++DRL QKKKA+IKQ
Sbjct: 61 QGDADSSLDRLRQKKKADIKQ 81
>emb|CAB57312.1| 40S ribosomal protein S21 [Cyanophora paradoxa]
gi|27923850|sp|Q9SMI2|RS21_CYAPA 40S ribosomal protein
S21
Length = 82
Score = 107 bits (267), Expect = 8e-23
Identities = 47/75 (62%), Positives = 66/75 (87%), Gaps = 1/75 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLD-ESGVYNGQFSTYALCGYIR 59
MQN+EG+I +LYIPRKCSATNRLI+A DHA+VQIN+GH+D SG+Y G ++T+ALCG++R
Sbjct: 1 MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60
Query: 60 AQGDADSAIDRLWQK 74
+ G++D+A++RL K
Sbjct: 61 SMGESDAALNRLCVK 75
>gb|EAA59088.1| hypothetical protein AN3823.2 [Aspergillus nidulans FGSC A4]
gi|67526731|ref|XP_661427.1| hypothetical protein
AN3823_2 [Aspergillus nidulans FGSC A4]
gi|49092998|ref|XP_407960.1| hypothetical protein
AN3823.2 [Aspergillus nidulans FGSC A4]
Length = 88
Score = 106 bits (264), Expect = 2e-22
Identities = 46/74 (62%), Positives = 64/74 (86%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
M+NE+G+I +LY+PRKCSATNR+I A DHASVQI+IG +DE+G Y G+ TYALCG+IRA
Sbjct: 1 MENEKGEIVDLYVPRKCSATNRIIKANDHASVQISIGKVDENGRYTGENQTYALCGFIRA 60
Query: 61 QGDADSAIDRLWQK 74
+G++D +++RL Q+
Sbjct: 61 RGESDDSLNRLTQR 74
>gb|EAL87454.1| Ribosomal protein S21e [Aspergillus fumigatus Af293]
Length = 88
Score = 102 bits (254), Expect = 2e-21
Identities = 44/74 (59%), Positives = 63/74 (84%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
M+NE+G+I +LY+PRKCSATNR+I A DHASVQI+I +DE+G Y G+ +YALCG+IRA
Sbjct: 1 MENEKGEIVDLYVPRKCSATNRIIKANDHASVQISIAKVDENGRYTGENQSYALCGFIRA 60
Query: 61 QGDADSAIDRLWQK 74
+G++D +++RL Q+
Sbjct: 61 RGESDDSLNRLCQR 74
>gb|AAS51481.1| ACR255Cp [Ashbya gossypii ATCC 10895]
gi|45185941|ref|NP_983657.1| ACR255Cp [Eremothecium
gossypii]
Length = 87
Score = 100 bits (248), Expect = 1e-20
Identities = 46/75 (61%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N++GQ+ ELY+PRKCSATNR+I AKDH SVQINI +DE+G G++ TYAL GY+R
Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKAKDHGSVQINIAQVDENGHAVPGEYITYALSGYVR 60
Query: 60 AQGDADSAIDRLWQK 74
A+G+AD +++RL QK
Sbjct: 61 ARGEADDSMNRLAQK 75
>emb|CAH02841.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
gi|50302635|ref|XP_451253.1| unnamed protein product
[Kluyveromyces lactis]
Length = 87
Score = 99.4 bits (246), Expect = 2e-20
Identities = 46/75 (61%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N++GQ+ ELY+PRKCSATNR+I AKDH+SVQINI +DE G G++ TYAL GYIR
Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKAKDHSSVQINIAQVDEEGRAIPGEYVTYALSGYIR 60
Query: 60 AQGDADSAIDRLWQK 74
A+G+AD +++RL Q+
Sbjct: 61 ARGEADDSLNRLAQQ 75
>ref|XP_628995.1| 40S ribosomal protein S21 [Dictyostelium discoideum]
gi|60462441|gb|EAL60662.1| 40S ribosomal protein S21
[Dictyostelium discoideum]
Length = 78
Score = 97.8 bits (242), Expect = 6e-20
Identities = 43/66 (65%), Positives = 56/66 (84%)
Query: 10 ELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAID 69
ELY PRKCSATNRLITAKDHASVQINIGH++ G+YNG+ + +A CG++R G +D+A++
Sbjct: 7 ELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQSDAALN 66
Query: 70 RLWQKK 75
RL Q+K
Sbjct: 67 RLAQQK 72
>gb|AAK95204.1| 40S ribosomal protein S21 [Ictalurus punctatus]
Length = 83
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/72 (59%), Positives = 58/72 (79%), Gaps = 1/72 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDE-SGVYNGQFSTYALCGYIR 59
MQN+ G+ +LY+PRKCSA+NR+I AKDHAS+QINI +D+ +G +NGQF TYA+CG IR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 60 AQGDADSAIDRL 71
G+AD ++ RL
Sbjct: 61 RMGEADDSLLRL 72
>gb|AAH71475.1| Ribosomal protein S21 [Danio rerio] gi|29124635|gb|AAH49056.1|
Ribosomal protein S21 [Danio rerio]
gi|41055255|ref|NP_957485.1| ribosomal protein S21
[Danio rerio]
Length = 81
Score = 94.7 bits (234), Expect = 5e-19
Identities = 43/72 (59%), Positives = 57/72 (78%), Gaps = 1/72 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDE-SGVYNGQFSTYALCGYIR 59
MQN+ G+ +LY+PRKCSA+NR+I AKDHAS+QINI +D +G +NGQF TYA+CG IR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIR 60
Query: 60 AQGDADSAIDRL 71
G+AD ++ RL
Sbjct: 61 RMGEADDSLLRL 72
>ref|NP_012983.1| Protein component of the small (40S) ribosomal subunit; nearly
identical to Rps21Bp and has similarity to rat S21
ribosomal protein; Rps21ap [Saccharomyces cerevisiae]
gi|4411|emb|CAA30671.1| YS25 protein [Saccharomyces
cerevisiae] gi|486517|emb|CAA82135.1| RPS21A
[Saccharomyces cerevisiae] gi|71046|pir||R3BY1E
ribosomal protein S21.e.A, cytosolic - yeast
(Saccharomyces cerevisiae)
gi|133881|sp|P05760|RS21_YEAST 40S ribosomal protein
S21 (S26) (YS25)
Length = 87
Score = 94.4 bits (233), Expect = 7e-19
Identities = 42/74 (56%), Positives = 60/74 (80%), Gaps = 1/74 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N++GQ+ ELY+PRKCSATNR+I A DHASVQIN+ +DE G G++ TYAL GY+R
Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVR 60
Query: 60 AQGDADSAIDRLWQ 73
++G++D +++RL Q
Sbjct: 61 SRGESDDSLNRLAQ 74
>emb|CAA60819.1| unnamed protein product [Saccharomyces cerevisiae]
gi|6322325|ref|NP_012399.1| Protein component of the
small (40S) ribosomal subunit; nearly identical to
Rps21Bp and has similarity to rat S21 ribosomal
protein; Rps21bp [Saccharomyces cerevisiae]
gi|1015540|emb|CAA89431.1| RPS25B [Saccharomyces
cerevisiae] gi|1071979|pir||S56918 ribosomal protein
S21.e.B, cytosolic - yeast (Saccharomyces cerevisiae)
Length = 87
Score = 94.4 bits (233), Expect = 7e-19
Identities = 42/74 (56%), Positives = 60/74 (80%), Gaps = 1/74 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N++GQ+ ELY+PRKCSATNR+I A DHASVQIN+ +DE G G++ TYAL GY+R
Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYITYALSGYVR 60
Query: 60 AQGDADSAIDRLWQ 73
++G++D +++RL Q
Sbjct: 61 SRGESDDSLNRLAQ 74
>gb|AAX07666.1| 40S ribosomal protein S21-like protein [Magnaporthe grisea]
gi|38109287|gb|EAA55180.1| hypothetical protein
MG06837.4 [Magnaporthe grisea 70-15]
gi|39977905|ref|XP_370340.1| hypothetical protein
MG06837.4 [Magnaporthe grisea 70-15]
Length = 87
Score = 94.4 bits (233), Expect = 7e-19
Identities = 42/75 (56%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N++G+I +LY+PRKCSATNR+I A+DHASVQI+I +DE+G G+ YALCG++R
Sbjct: 1 MENDKGEIVDLYVPRKCSATNRIIKAQDHASVQISIAKVDENGRAVQGENHVYALCGFVR 60
Query: 60 AQGDADSAIDRLWQK 74
A G+ D A++RL Q+
Sbjct: 61 AMGEGDDALNRLTQR 75
>gb|AAP21828.1| ribosomal protein S21 [Branchiostoma belcheri tsingtaunese]
Length = 85
Score = 94.0 bits (232), Expect = 9e-19
Identities = 43/77 (55%), Positives = 57/77 (73%), Gaps = 1/77 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLD-ESGVYNGQFSTYALCGYIR 59
MQN+ G++ +LYIPRKCS+TNR+I AKDHAS+QIN +D +G GQ+ TYA+CGYIR
Sbjct: 1 MQNDAGEVVDLYIPRKCSSTNRIIGAKDHASIQINFAEVDPTTGRMTGQYKTYAICGYIR 60
Query: 60 AQGDADSAIDRLWQKKK 76
G++D + RL K K
Sbjct: 61 QMGESDDCLKRLAIKDK 77
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,867,811
Number of Sequences: 2540612
Number of extensions: 4400538
Number of successful extensions: 7740
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7601
Number of HSP's gapped (non-prelim): 89
length of query: 82
length of database: 863,360,394
effective HSP length: 58
effective length of query: 24
effective length of database: 716,004,898
effective search space: 17184117552
effective search space used: 17184117552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0030.2