BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0029a.5
(1393 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 1299 0.0
gb|AAO23078.1| polyprotein [Glycine max] 1154 0.0
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 1123 0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 1101 0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 1084 0.0
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 1059 0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 1052 0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 1051 0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 1012 0.0
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 1000 0.0
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 997 0.0
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 995 0.0
gb|AAL75999.1| putative polyprotein [Zea mays] 988 0.0
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon... 987 0.0
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop... 986 0.0
gb|AAX95226.1| retrotransposon protein, putative, unclassified [... 975 0.0
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 971 0.0
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 970 0.0
gb|AAL76001.1| putative gag-pol polyprotein [Zea mays] 961 0.0
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon... 878 0.0
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 1299 bits (3361), Expect = 0.0
Identities = 660/1406 (46%), Positives = 928/1406 (65%), Gaps = 22/1406 (1%)
Query: 4 HRSHLRAVTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWF 63
H+ A R VD P + G +A W+ ++E+ F +R E EK+E + + ++ W+
Sbjct: 219 HQPRFEAAPRRTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWW 278
Query: 64 QWWEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRN 123
+ +++ W F++ RF+P+ + LL+V+Q G+V EYRE FE L + +
Sbjct: 279 RCSKDREQIYTWREFQEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPH 338
Query: 124 ADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGW 183
++L+ FLNGL+ ++ ++ +LA++++ A L+E + + + + +
Sbjct: 339 VTSDILESAFLNGLRRSLRDQVVRCRPVNLADIVEIAKLIESQERNAVSYQVRNQARTNT 398
Query: 184 KDLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGL-CFKCGDKWGKEHICSMK 242
N+ TG++ + + + + T+ +R C CGD+W + H C +
Sbjct: 399 APFNNQVSTGSRVVDRAPTRQPFIPSRDTTRASGSGEARNSNPCRYCGDRWFQGHKCKPQ 458
Query: 243 NYQ--LILMEVEED-----EEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVK 295
+ I EVEE+ E E + EE D E KV+ LS + E + +S K++
Sbjct: 459 KLKGLAITEEVEEESPLIEELNEPLTEEEGDPEPAEGFKVMTLSSLNDE--SQEQSMKMR 516
Query: 296 GKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKL 355
G IGN +V++L+D GAT NFIS+ LV E V T + V+VG G ++SG C ++ L
Sbjct: 517 GYIGNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKCVDIPL 576
Query: 356 EVQGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSV 415
EVQGI +Q +++ LG ++VLG WLA LG AN+++L I W + L G+P +
Sbjct: 577 EVQGIEFVQDYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLYGDPDL 636
Query: 416 CRVTANWKSIKITEQQEAEGYYLS----YEYQKEEEKTEAEVPEGMRKILEEYPEVFQEP 471
CR + +S++ + Y L +E +K+EE+T + ++++L++Y VFQ P
Sbjct: 637 CRGQISMRSMERVIKYTGTAYLLELASLFESKKQEEQTALQ--PAIQRLLDQYQGVFQTP 694
Query: 472 KGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSP 531
+ LPP R +HAI LQEG+S NIRPYRY F QKNEIEKLV+EMLN+ IIR S SP+SSP
Sbjct: 695 QLLPPVRNREHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPSVSPYSSP 754
Query: 532 AILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIR 591
+LVKKKDGGWRFCVDYRALN+ATIPDK+PIP+I+ELLDE+ A VFSKLDLKSGY QIR
Sbjct: 755 VLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKSGYFQIR 814
Query: 592 MKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIY 651
MK D+ KTAF+THEGHYE+LV+PFGLTNAPSTFQ++MN + RPYLRKFVLVFFDDIL+Y
Sbjct: 815 MKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVY 874
Query: 652 SKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDML 711
S + + H HL VLQ+L + AN KKC+FG I YLGH+IS+ GVA DP K++ ML
Sbjct: 875 SPDMKTHLKHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPEKVEAML 934
Query: 712 DWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEV 771
WP+PK V LRGFLG TGYYRRFVKNY ++A+PL LKKNSF W E AT AF LK
Sbjct: 935 QWPLPKSVTELRGFLGFTGYYRRFVKNYGQIARPLRDQLKKNSFDWNEAATSAFQALKAA 994
Query: 772 MTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELM 831
++ +PVLV P+F + F +ETDASG G+GAVL Q R +A++S+ S + + +SVYEREL+
Sbjct: 995 VSALPVLVLPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRSVYERELL 1054
Query: 832 AVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGI 891
A+V AV KW+HYL +F+I TDQRSLR L +Q+ + QQ+W SKL G + I+YKPG+
Sbjct: 1055 AIVKAVTKWKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRIEYKPGV 1114
Query: 892 ENKAADALSRKLQFSAISSVQCA-----EWADLEAEILEDERYRKVLQELATQGNSAVGY 946
+NK ADALSR+ A+S + + L+AEI +D ++L+ A + +
Sbjct: 1115 DNKVADALSRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKNWAQGDHHDSDF 1174
Query: 947 QLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDI 1006
+ G + K +V+P GS I +L++FH + +GGH G +T+KR+++ YW G++ D+
Sbjct: 1175 TVADGLIYRKGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYWRGLRKDV 1234
Query: 1007 QNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDR 1066
NY++ C++CQ NKY L+PAG L PLPIP Q W+D+S+DF+ GLP + + ILVVVDR
Sbjct: 1235 VNYIKGCQICQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNCILVVVDR 1294
Query: 1067 FTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTK 1126
+KY+HFI L HP+ AK + E FI++VV+LHGFP ++VSDRDR+FLS FWSE+FKL GT
Sbjct: 1295 LSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELFKLQGTG 1354
Query: 1127 LKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTP 1186
L+ S+AYHPQTDGQTEVVNRC+E+YLRC G +P W +WL WAE+WYNT+YHSA KTTP
Sbjct: 1355 LQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSATKTTP 1414
Query: 1187 FKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRD 1246
F+A+YGREPPV+ + D T+ VE+L +R+ +L EL+ NLE AQ +M++ A+K RRD
Sbjct: 1415 FQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAADKSRRD 1474
Query: 1247 VQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHP 1306
V +E+ + VYLK++PY+ S+A R N+KLS RY+GP+ ++ +I AYKLQLPE S +HP
Sbjct: 1475 VAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEHSTIHP 1534
Query: 1307 VFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRE-NRDGDLEVLIRWKDLPT 1365
VFH+S LK+AV Q LP L+ E PE ++D R+ N + EVL++W L T
Sbjct: 1535 VFHVSQLKRAVPPSFTPQELPKILSPTLEWNTGPEKLLDIRQSNTNSGPEVLVQWSGLST 1594
Query: 1366 FEDSWEDFSKLLDQFPNHQLEDKLNL 1391
E +WE L+ Q+P+ LEDK++L
Sbjct: 1595 LESTWEPLLTLVQQYPDFDLEDKVSL 1620
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 1154 bits (2986), Expect = 0.0
Identities = 616/1406 (43%), Positives = 858/1406 (60%), Gaps = 32/1406 (2%)
Query: 15 RVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 74
++D P F+G + W+ K E+FF +A+++ + + ++ + W+Q ++ +
Sbjct: 99 KLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEPFSS 158
Query: 75 WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVFL 134
W+ F +AL F P+ P L + Q +V EY F L + E + F+
Sbjct: 159 WQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEAILDCFV 218
Query: 135 NGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKD---LQNKGG 191
+GLQEEI ++K L + + A L EEK T+ K R + K
Sbjct: 219 SGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARNFTSNTSATQKYP 278
Query: 192 TGNQDTEGKQPE----------KKWN----GGQRLTQTELQERSRKGLCFKCGDKWGKEH 237
NQ + +P K +N ++++ E+Q R K LC+ C +K+ H
Sbjct: 279 PTNQKNDNPKPNLPPLLPTPSTKPFNLRNQNIKKISPAEIQLRREKNLCYFCDEKFSPAH 338
Query: 238 ICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGK 297
C N Q++L+++EE +E++ + E ++ LSLN+ G + + G+
Sbjct: 339 KCP--NRQVMLLQLEETDEDQTDEQVMVTEEANMDDDTHHLSLNAMRGSNGVGTIRFTGQ 396
Query: 298 IGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEV 357
+G V IL+D G++ NFI + L++PV V VGNG G+ + L L +
Sbjct: 397 VGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGIVQQLPLHI 456
Query: 358 QGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCR 417
QG + ++L + G +V+LG WLA+LG A++ L +++ + + LQGE +
Sbjct: 457 QGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQNDKFITLQGEGNSEA 516
Query: 418 VTANWKSIK-ITEQQEAEGYYLSYEYQKE-EEKTEAEVPEGMRK----ILEEYPEVFQEP 471
A + + + E + QKE E T ++P + +L Y +VF P
Sbjct: 517 TQAQLHHFRRLQNTKSIEECFAIQLIQKEVPEDTLKDLPTNIDPELAILLHTYAQVFAVP 576
Query: 472 KGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSP 531
LPP+R DHAI L++G+ +RPYRYP QK++IEK+++EML GII+ S SPFS P
Sbjct: 577 ASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLP 636
Query: 532 AILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIR 591
+LVKKKDG WRFC DYRALN T+ D FP+P +DELLDE+ A FSKLDL+SGYHQI
Sbjct: 637 ILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQIL 696
Query: 592 MKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIY 651
++ ED KTAFRTH GHYE+LV+PFGLTNAP+TFQ LMN++ + LRKFVLVFFDDILIY
Sbjct: 697 VQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIY 756
Query: 652 SKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDML 711
S + + H HL VLQ LK++ L A KCSFG E+ YLGH +S GV+ + +K++ +L
Sbjct: 757 SASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVL 816
Query: 712 DWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEV 771
DWP P VK LRGFLGLTGYYRRF+K+Y+ +A PL LL+K+SF W A AFVKLK+
Sbjct: 817 DWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKA 876
Query: 772 MTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELM 831
MT PVL P+F +PFILETDASG G+GAVL Q G P+AY SK L+ R Q +S Y REL+
Sbjct: 877 MTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELL 936
Query: 832 AVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGI 891
A+ A+ K+RHYLLG+KF+I TDQRSL+ L DQ + EQQ W+ K +GYDF+I+YKPG
Sbjct: 937 AITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGK 996
Query: 892 ENKAADALSRKLQFSAISSVQCAEWADLEAEILEDERYRKVLQELATQGNSAVGYQLKRG 951
+N+AADALSR A S +L A ++ D + K L E QG A Y ++ G
Sbjct: 997 DNQAADALSRMFML-AWSEPHSIFLEELRARLISDP-HLKQLMETYKQGADASHYTVREG 1054
Query: 952 RLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQ 1011
L +KDR+V+P + +L+E+H + +GGHAGI RT R+ A FYW M+ D++ Y+Q
Sbjct: 1055 LLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQ 1114
Query: 1012 KCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYA 1071
KC +CQ+ K PAG LQPLPIP Q W D++MDFI GLP + G I+VV+DR TKYA
Sbjct: 1115 KCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYA 1174
Query: 1072 HFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSS 1131
HFI L YN+K +AE F+ +V+LHG P SIVSDRDRVF STFW +FKL GT L SS
Sbjct: 1175 HFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSS 1234
Query: 1132 AYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALY 1191
AYHPQ+DGQ+EV+N+C+E YLRC T PK W K L WAEFWYNT YH ++ TPF+ALY
Sbjct: 1235 AYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALY 1294
Query: 1192 GREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEV 1251
GREPP + + S+ EV + +R+ +L +LK NL +AQ M++QA+K R DV +++
Sbjct: 1295 GREPPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQI 1354
Query: 1252 GDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHIS 1311
GD V +K+QPY+ S R NQKLS RY+GP+ ++AKI AYKL+LP +++HPVFH+S
Sbjct: 1355 GDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVS 1414
Query: 1312 LLKKAVNAGVQSQPLPAALT-EEWELKVEPEAIMDTR---ENRDGDLEVLIRWKDLPTFE 1367
L K N Q LP LT E ++P I+ +R + ++L++W++ E
Sbjct: 1415 QL-KPFNGTAQDPYLPLPLTVTEMGPVMQPVKILASRIIIRGHNQIEQILVQWENGLQDE 1473
Query: 1368 DSWEDFSKLLDQFPNHQLEDKLNLQG 1393
+WED + +P LEDK+ +G
Sbjct: 1474 ATWEDIEDIKASYPTFNLEDKVVFKG 1499
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 1123 bits (2904), Expect = 0.0
Identities = 611/1411 (43%), Positives = 852/1411 (60%), Gaps = 164/1411 (11%)
Query: 5 RSHLRAVTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQ 64
R +R + V++PMF+G+ YGW+ +VERFFR EAE++ +V +++ AL W+
Sbjct: 119 RPRIRENLLKNVEMPMFDGSGIYGWIARVERFFRSGGYNEAEQLALVSVSVSGEALSWYN 178
Query: 65 WWEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNA 124
W + +W K L RF L+ P L +KQ GSV EY + FE L++ +
Sbjct: 179 WAISRGDFVSWLKLKSGLMLRFGNLKLRGPSQSLFCIKQTGSVAEYVQRFEDLSSQVGGL 238
Query: 125 DREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWK 184
D + L+G+FLNGL E++ + ++ +L E++ A +E + MR KE
Sbjct: 239 DDQKLEGIFLNGLTGEMQELVHMHKPQNLPEMVAVARSME--TSVMRRVVQKE------- 289
Query: 185 DLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNY 244
L +L E+ RKG+CF+C W KEH C K
Sbjct: 290 ---------------------------LQLVKLDEKRRKGICFRCDGPWSKEHKCPNKEL 322
Query: 245 QLIL------MEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKI 298
+++ MEV E EE F ++ + +LS +S GL S + K+KG I
Sbjct: 323 RVLTVINGFEMEVLESNSVEEEFHDSV-------AQFAELSFSSYMGLPSYTTIKMKGSI 375
Query: 299 GNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEV- 357
E C F + + +G G + G+C + + +
Sbjct: 376 CKGEW-----CHTQFYF----------------PNFHIRLGTGITVQGLGLCDKVTMTLP 414
Query: 358 ----QGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEP 413
Q + + HF L LG +V+LG+ WL +LG+ + N++ + ++ G+ + L+G+P
Sbjct: 415 VGCGQELELTTHFITLDLGPVDVILGIAWLRTLGDCKVNWERHELSFLYHGRTVTLRGDP 474
Query: 414 SVCRVTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKG 473
+ + KS + + Q +E LE Q KG
Sbjct: 475 ELDTFKMSLKS-----------FSTKFRLQNKE--------------LEVSLNSHQNLKG 509
Query: 474 LPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAI 533
LPP + +HAI L G ++RPYRYP K +E LV EML++GIIR S SPFSSP +
Sbjct: 510 LPPIKGNEHAISLLPGTRAISVRPYRYPHAHKEAMEGLVSEMLDNGIIRASKSPFSSPVL 569
Query: 534 LVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMK 593
LVKKKD WRFCVDYRALN+ATIP+KFPIP+ID+LLDE+ A++FSKLDL++GYHQIRMK
Sbjct: 570 LVKKKDQSWRFCVDYRALNRATIPNKFPIPMIDQLLDELHGAIIFSKLDLRAGYHQIRMK 629
Query: 594 EEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSK 653
EDI KT FRTH+GH+E+LV+PFGL+NAP+TFQ+ MN +LRP+LRKFVLVFFDDILIYS+
Sbjct: 630 VEDIEKTTFRTHDGHFEFLVMPFGLSNAPATFQSSMNDMLRPFLRKFVLVFFDDILIYSR 689
Query: 654 NEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDW 713
NE+ H++HL +VL+VL+E+ AN+KK + I+Q GV+ DP+K M W
Sbjct: 690 NEQEHEEHLAMVLKVLEEHQFYANRKK-----------PYHITQ-GVSTDPTKTVAMTKW 737
Query: 714 PIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEVMT 773
P+ VK LRGFLGLTGYYRRF+K Y LA+PL +LLKK+SF W+E A +AF LK M+
Sbjct: 738 VTPQSVKELRGFLGLTGYYRRFLKGYGTLARPLTELLKKDSFVWSESAQEAFDALKRAMS 797
Query: 774 TVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAV 833
T PVL P+F GK G L+ + Q K VYERELMA+
Sbjct: 798 TAPVLALPDF-----------GKVHG----------------LTSKEQLKPVYERELMAI 830
Query: 834 VLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIEN 893
VL++QKW+HYL+G +FV+HTDQ+SL+FL +QR + + QKW++KL+ Y+F+I YK G++N
Sbjct: 831 VLSIQKWKHYLMGRRFVLHTDQKSLKFLQEQREVSMDYQKWLTKLLHYEFDILYKLGVDN 890
Query: 894 KAADALSRKLQ---------FSAISSVQCAEWADLEAEILEDERYRKVLQEL--ATQGNS 942
KAAD LSR +Q A + + DL EI + + +++E A QG S
Sbjct: 891 KAADGLSRMVQPTGSFSSMLLMAFTVPTVLQLHDLYEEIDSNAHLQHLVKECLSAKQGTS 950
Query: 943 AVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGM 1002
A Y +K GRL K R+++PK S + +L E+H LGGH+G+ +T KRI F+WEGM
Sbjct: 951 A--YTVKEGRLWKKQRLIIPKDSKFLPLILAEYHSGLLGGHSGVLKTMKRIQQSFHWEGM 1008
Query: 1003 KLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILV 1062
DIQ +V KCE+CQR KY L+PAG LQPLPIP+Q W DIS+DF+ GLP
Sbjct: 1009 MKDIQKFVAKCEMCQRQKYSTLSPAGLLQPLPIPTQVWEDISLDFVEGLP---------- 1058
Query: 1063 VVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKL 1122
DR +KY HFI L HP+NA ++A +FI EVV+LHGFP SIVSDRD FLS+FW + FKL
Sbjct: 1059 --DRLSKYGHFIGLKHPFNAVDVARIFIHEVVKLHGFPASIVSDRDNTFLSSFWKDCFKL 1116
Query: 1123 AGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAI 1182
+GTKLK+S+A+HPQTDGQTEV+NR +ETYLRC + PK W ++L AE WYN+++H+ I
Sbjct: 1117 SGTKLKYSTAFHPQTDGQTEVLNRTLETYLRCFASAHPKTWFQYLPRAELWYNSSFHTTI 1176
Query: 1183 KTTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANK 1242
KTTPFK LYGR+PP I + + T E+E L +R+L+L ++K +L AQ M+ +K
Sbjct: 1177 KTTPFKVLYGRDPPPIMRFEANSTKNCELEGLLKQRDLMLADIKEHLVNAQQLMKNNDDK 1236
Query: 1243 HRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGS 1302
HRR+V+++ + V+LK++PY+ S+ KR QKL+ +Y+GP+ I+ +I AY+L+LPEGS
Sbjct: 1237 HRREVEFDTRNRVFLKLRPYRQNSVTKRVCQKLAAKYFGPFEIMERIGKVAYRLKLPEGS 1296
Query: 1303 QVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKD 1362
++H VFH+S LK+ + Q PLP LT + E V PEA+++TR N DG LE L+ W+
Sbjct: 1297 KIHLVFHVSQLKQVLGDHHQVIPLPEVLTADNEFVVVPEAVLETRYNEDGLLEALVHWQG 1356
Query: 1363 LPTFEDSWEDFSKLLDQFPNHQLEDKLNLQG 1393
LP ED+WE L QFP L+DKL+++G
Sbjct: 1357 LPVHEDTWEIAKDLKKQFPGLALQDKLHVEG 1387
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 1101 bits (2848), Expect = 0.0
Identities = 591/1406 (42%), Positives = 859/1406 (61%), Gaps = 54/1406 (3%)
Query: 15 RVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 74
++D P F+G W+ KVE FF + E K++M I + A W Q + + +
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 75 ----WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLK 130
W+ + + L RF+ +P L +++ +++Y + FEL+ + N E L
Sbjct: 171 VLYDWKGYVKLLKERFEDDC-DDPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLV 228
Query: 131 GVFLNGLQEEIKAEMKLYPADD------LAELMDRALLLEEKNT-------AMRGGKPKE 177
V+L GL+ + + ++++ L + ++A + NT A GG K
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEKAHPKKPANTTWSTNRSAPTGGYNKY 288
Query: 178 EDKRGWKDLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEH 237
+ K G + G GN +QP+K ++Q E+ +R KGLC+ C +K+ EH
Sbjct: 289 Q-KEGESKTDHYGNKGNFKPVSQQPKK-------MSQQEMSDRRSKGLCYFCDEKYTPEH 340
Query: 238 ICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGK 297
K QL M+V DEE E+ EE + + + + Q+S+N+ G+ ++ +VKG
Sbjct: 341 YLVHKKTQLFRMDV--DEEFEDAREELVNDD---DEHMPQISVNAVSGIAGYKTMRVKGT 395
Query: 298 IGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEV 357
+ + ILID G+T NF+ + +L V V V +G K R G + ++
Sbjct: 396 YDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDFSWKL 455
Query: 358 QGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCR 417
Q + ++ L G ++VLG+ WL +LG I F++L +++ QK++L G S
Sbjct: 456 QTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGS- 514
Query: 418 VTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEV------------PEGMRKILEEYP 465
K+ K+ + QE + Q+ E TE E+ + ++L EYP
Sbjct: 515 -VREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYP 573
Query: 466 EVFQEPKGLPP-RRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHS 524
++F EP LPP R +H I+L EG++ N RPYRY +QKNEI+KLV+++L +G ++ S
Sbjct: 574 DIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQAS 633
Query: 525 TSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLK 584
+SP++SP +LVKKKDG WR CVDYR LN T+ D FPIP+I++L+DE+G AV+FSK+DL+
Sbjct: 634 SSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLR 693
Query: 585 SGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVF 644
+GYHQ+RM +DI KTAF+TH GH+EYLV+PFGLTNAP+TFQ LMN + +P+LRKFVLVF
Sbjct: 694 AGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVF 753
Query: 645 FDDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADP 704
FDDIL+YS + E H+ HL+ V +V++ N L A KC+F P++ YLGH IS G+ DP
Sbjct: 754 FDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDP 813
Query: 705 SKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQA 764
+KIK + +WP P +K LRGFLGL GYYRRFV+++ +A PL+ L K ++F+WT A QA
Sbjct: 814 AKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVAQQA 873
Query: 765 FVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKS 824
F LK + PVL P FDK F++ETDA G+G+GAVLMQEG P+AY+S+ L + S
Sbjct: 874 FEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLS 933
Query: 825 VYERELMAVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFE 884
+YE+EL+AV+ AV+KWRHYLL S F+I TDQRSL++L +QR+ QQ+W+ KL+ +D+E
Sbjct: 934 IYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYE 993
Query: 885 IKYKPGIENKAADALSR----KLQFSAISSVQCAEWADLEAEILEDERYRKVLQELATQG 940
I+Y+ G EN ADALSR ++ A++ V+C D++A D + + ++ L
Sbjct: 994 IQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQRDP 1053
Query: 941 NSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWE 1000
+S + + L K +IV+P T+L H + +GGH+G T++R+ LFYW+
Sbjct: 1054 DSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGLFYWK 1113
Query: 1001 GMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTI 1060
GM DIQ Y++ C CQ+ K + G LQPLPIP W+++SMDFI GLP + GK I
Sbjct: 1114 GMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGKTVI 1173
Query: 1061 LVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMF 1120
+VVVDR +K AHFIALSHPY+A +A ++ V +LHG PTSIVSDRD VF S FW E F
Sbjct: 1174 MVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFF 1233
Query: 1121 KLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHS 1180
L G LK +SAYHPQ+DGQTEVVNRC+ETYLRC+ +P+ W KWL+ AE+WYNTNYHS
Sbjct: 1234 TLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHS 1293
Query: 1181 AIKTTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQA 1240
+ + TPF+ +YG+ PPV + V V + ER +L LK +L +AQ+RM+Q A
Sbjct: 1294 SSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFA 1353
Query: 1241 NKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPE 1300
++HR + ++E+GD VY+K+QPY+ +S+ R+NQKLSP+Y+GPY II + AYKL LP
Sbjct: 1354 DQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPS 1413
Query: 1301 GSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGD--LEVLI 1358
SQVHPVFH+S LK V + LP+ + + +E KV + + NR G +VL+
Sbjct: 1414 YSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFE-KVPEKVVERKMVNRQGKAVTKVLV 1472
Query: 1359 RWKDLPTFEDSWEDFSKLLDQFPNHQ 1384
+W + P E +WE L FP +
Sbjct: 1473 KWSNEPLEEATWEFLFDLQKTFPEFE 1498
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 1084 bits (2803), Expect = 0.0
Identities = 579/1403 (41%), Positives = 856/1403 (60%), Gaps = 53/1403 (3%)
Query: 11 VTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQW----W 66
+ G R++IP+F+G D W+ + E+F+ +S + + + + ++ +A+ W++ W
Sbjct: 203 IKGPRLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPW 262
Query: 67 EEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVME-----YRENFELLAAPM 121
+ T W + + RF A +VKQ +E + E +L+
Sbjct: 263 QLIT----WPQWCAMVSTRFSAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRREH 318
Query: 122 RNADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKR 181
+ L F+ GL+ +IK ++ + L E + K E
Sbjct: 319 PYLQEQYLNSCFIGGLRGDIKHDVCGHKPQGLLE-------------SYWYTKNYERAAN 365
Query: 182 GWKDLQNKGGTGNQDTEGK-QPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICS 240
K+L N Q+ G Q N GQ Q E +E + C+ C + W +H C
Sbjct: 366 ARKNLLNFNRNRFQNQAGPIQGRNVVNRGQPREQVEKKEERK---CWFCKEPWFPKHQCK 422
Query: 241 MKN-YQLILMEVEEDE---EEEEIFEEAEDGEFVLEG---------KVLQLSLNSKEGLT 287
+K +LME EE + EE E+ ED + E +++ +S N+ G T
Sbjct: 423 VKKALNALLMEGEEGKDEGEEGELTGNQEDCKLEKEEAPPDDENQEELMFVSHNAVYGTT 482
Query: 288 SNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNS 347
+F V +I R + L+D G+TS F+ QD V P+++T V V G + ++
Sbjct: 483 RPDTFSVIIQINGRRAVGLVDSGSTSTFMDQDYAVRNHCPLVSTDAKKVVVAGGGELKSE 542
Query: 348 GVCKNLKLEVQGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKM 407
L ++QG + F I+ L G +V+LG DW+ I + ++ + +++G+K
Sbjct: 543 VQVPELVYQIQGETFSNKFNIIPLKGYDVILGADWIYKYSPITLDLKKRELG-ITKGEKT 601
Query: 408 VLQGEPSVCRVTANWKSIKITEQQEAEGYYLSYEYQK-EEEKTEAEVPEGMRKILEEYPE 466
V+ + + S K+ + G ++ + +EE+T E+PE +++IL+E+P
Sbjct: 602 VVIQDFTRPGKHLWVDSKKVDQILRKGGLGCLFQITRVKEEETSHEIPEDIKEILQEFPA 661
Query: 467 VFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTS 526
V ++PKGLPPRR DH I L+ GA PN+RPYR P YQK +EK++ E++ S I+ S
Sbjct: 662 VLKDPKGLPPRRNCDHVITLKSGAEPPNLRPYRVPHYQKEAMEKIIAELIESKEIQVSDI 721
Query: 527 PFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSG 586
P+SSPA++V+KKDG WR CVDYR LN T+ +KFP+PII++LLDE+ A VFSKLDL+SG
Sbjct: 722 PYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIEDLLDELNGAKVFSKLDLRSG 781
Query: 587 YHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFD 646
YHQIRM +DIPKTAFRTH GHYEY V+PFGLTNAP+TFQ+LMNQVL P+LRK+VLVFFD
Sbjct: 782 YHQIRMATQDIPKTAFRTHLGHYEYQVMPFGLTNAPTTFQSLMNQVLAPFLRKYVLVFFD 841
Query: 647 DILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSK 706
DILIYSK+ HK+H+R V++VL+EN LV KKC+FG P + YLGH+ISQ GVA DP K
Sbjct: 842 DILIYSKDWAEHKEHIRQVMKVLEENKLVVKLKKCAFGLPSVTYLGHIISQDGVATDPKK 901
Query: 707 IKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFV 766
++ + +P PK V LR FLG+TGYYRRF+KNY + +PL+ +LKK FQW T+AF
Sbjct: 902 VEKIATYPTPKSVTDLRKFLGMTGYYRRFIKNYGIVCRPLHDMLKKEGFQWEREQTEAFE 961
Query: 767 KLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVY 826
LK M T PVL P+F K F++E DA G G+GAVLMQ GRP+AY SKTL +A A+S+Y
Sbjct: 962 TLKTHMCTSPVLSLPDFTKEFVIEADACGNGIGAVLMQSGRPLAYFSKTLGPKAAAQSIY 1021
Query: 827 ERELMAVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIK 886
E+E MA++ A++KWRHY+LGS+ +I TDQ+SL+F+ +QR++ Q K + KLM YD+ I+
Sbjct: 1022 EKEAMAILEALKKWRHYVLGSRLIIKTDQQSLKFMMNQRLVEGIQHKLLLKLMEYDYSIE 1081
Query: 887 YKPGIENKAADALSR---KLQFSAISSVQCAEWA-DLEAEILEDERYRKVLQELATQGNS 942
YK G EN ADALSR Q AI++V EW D++ D + K+L + T+G++
Sbjct: 1082 YKAGKENLVADALSRIPPAEQCQAITTV-IPEWVRDIQRSYEGDVQAHKILSLIGTEGDT 1140
Query: 943 AVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGM 1002
Y + G L YK RI + + + +++ +H +A GGH+G+ TY RI +LFYW G+
Sbjct: 1141 DGSYSQEAGLLRYKGRIYVGENTEIREELIRSYHSSAFGGHSGMRATYHRIKSLFYWPGL 1200
Query: 1003 KLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILV 1062
K ++ ++++C +CQ K E ++ G L PL +P W I+MDF+ GLPK+ GKD ILV
Sbjct: 1201 KKAVEGFIRECPICQVTKAEHIHIPGLLDPLEVPDMAWAHITMDFVEGLPKSNGKDVILV 1260
Query: 1063 VVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKL 1122
VVDR TKYAHFIA++HPY +++ E+F+ + RLHG P +I++DRDR+F S + E+FK
Sbjct: 1261 VVDRLTKYAHFIAMAHPYTVEQVVELFMNNIHRLHGMPMAIITDRDRIFTSQLFQEIFKS 1320
Query: 1123 AGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAI 1182
+LKFS++YHPQTDGQTE VN+C+E+YLR +T +P +W WL+ AE+WYNT YH++I
Sbjct: 1321 MKVRLKFSTSYHPQTDGQTERVNQCLESYLRSMTFQEPTRWHSWLALAEWWYNTTYHTSI 1380
Query: 1183 KTTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANK 1242
+ TPF+ALYG PP I + + +E +++ I+++LK +L +AQ R++ A++
Sbjct: 1381 QMTPFQALYGYPPPQINEFSVPCNVSEEARVTIEQKDAIIQKLKYSLTEAQRRIKHYADR 1440
Query: 1243 HRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGS 1302
+R + VGD+VYLK+QPY+ + R + KL ++YGP+ I+ K+ AYKLQLPEGS
Sbjct: 1441 NRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGS 1500
Query: 1303 QVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEV---LIR 1359
+HPVFH+S LKK + + ++ + ++K EP A++ R G + V L+
Sbjct: 1501 NIHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQIKTEPVAVLKRRMIPRGGVAVTQWLVL 1560
Query: 1360 WKDLPTFEDSWEDFSKLLDQFPN 1382
W +L E +WED S + FP+
Sbjct: 1561 WHNLSPSEATWEDASMIQSMFPS 1583
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 1059 bits (2739), Expect = 0.0
Identities = 570/1406 (40%), Positives = 844/1406 (59%), Gaps = 54/1406 (3%)
Query: 11 VTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQW----W 66
+ G R++I +F G D W+ + E+FF ++ + + + + + RA WF+ W
Sbjct: 227 IKGPRLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPW 286
Query: 67 EEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVME-----YRENFELLAAPM 121
+ T W + + RF A +VKQ G +E + E +L+
Sbjct: 287 QVIT----WPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRRDH 342
Query: 122 RNADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKR 181
F++GL+ +IK ++ L E A KN K
Sbjct: 343 PYLQEPYFTSCFISGLRGDIKHDVCGQKPQGLLESYWYA-----KNYEKAANSRKAAANF 397
Query: 182 GWKDLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSM 241
LQ G TG + +N GQ + + +E + C+ C + W H C +
Sbjct: 398 NRNRLQTGGNTG---------KNVYNKGQPRQEGDKKEEKK---CWFCKEPWFPRHQCKV 445
Query: 242 KN--YQLIL-----MEVEEDEEEEEIFEEAEDGEFV------LEGKVLQLSLNSKEGLTS 288
K + L++ +EVEED EEE + + GE + ++ +++ +S ++ GLT
Sbjct: 446 KQAIHALLVENEESVEVEEDSVEEEEIKGEKQGEKLPEQTENVQEELMSISQSAVYGLTR 505
Query: 289 NRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSG 348
+F V K+ ++ + L+D G+T+ F+ ++ + + T V V G + ++
Sbjct: 506 PDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQCTLENTKMRKVIVAGGGELKSEL 565
Query: 349 VCKNLKLEVQGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMV 408
+ ++ E+QG S F +L L +++LG DW+ I + ++ ++ G+++
Sbjct: 566 IVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFKYSPITLDLRKREMKITKGGRELE 625
Query: 409 LQG--EPSVCRVTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPE 466
+Q +P +N K K+ ++ A G + ++ E +P+ ++ +L+ +P+
Sbjct: 626 IQDFTKPGKYFQVSNKKMGKMIKKG-ALGCVIQINAITDQSNVEVGIPKDIQIVLQSFPK 684
Query: 467 VFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTS 526
V +EPKGLPPRR+ DH I L+ G+ PN+RPYR P +QK +E ++ E+ + IR S S
Sbjct: 685 VLKEPKGLPPRRSCDHVINLKVGSEPPNLRPYRVPHFQKGAMEDIITELFRTQEIRISDS 744
Query: 527 PFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSG 586
P+ SPA++V+KKDG WR CVDYR LN TI +KFP+PII++LLDE+ A VFSKLDL+SG
Sbjct: 745 PYVSPAVMVRKKDGSWRLCVDYRQLNAQTIKNKFPMPIIEDLLDELHGAKVFSKLDLRSG 804
Query: 587 YHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFD 646
YHQIRM E DIPKTAFRTH GHYEY V+PFGLTNAP+TFQALMNQVL P+LRKFVLVFF
Sbjct: 805 YHQIRMAEGDIPKTAFRTHLGHYEYNVMPFGLTNAPATFQALMNQVLAPFLRKFVLVFFA 864
Query: 647 DILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSK 706
DILIYSK + H +H+++V+Q L N LV KKC FG + YLGH+IS GV+ DP K
Sbjct: 865 DILIYSKTQSEHLEHIKLVMQALSANQLVVRLKKCEFGLDRVSYLGHIISSEGVSTDPKK 924
Query: 707 IKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFV 766
I D+ + PK V +R FLG+ GYYRRF+K Y + +PL+ LLKK+ F+W + +AF
Sbjct: 925 ISDIKNRKPPKNVTEVREFLGMAGYYRRFIKGYGVICRPLHDLLKKDGFKWGDTQQEAFE 984
Query: 767 KLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVY 826
LKE M PVL P+F +PF++ETDA G G+GAVLMQ+GRP+AY SK L +A A+SVY
Sbjct: 985 LLKEKMCNSPVLALPDFSQPFVIETDACGIGIGAVLMQKGRPLAYFSKALGPKAAAQSVY 1044
Query: 827 ERELMAVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIK 886
E+E +A++ A++KWRHY+LG +I TDQ+SL+F+ QR++ Q K + KLM +D+ I+
Sbjct: 1045 EKEAIAILEALKKWRHYILGGSLIIKTDQQSLKFMMSQRLVEGIQHKLLLKLMEFDYVIE 1104
Query: 887 YKPGIENKAADALSR----KLQFSAISSVQCAEWA-DLEAEILEDERYRKVLQELATQGN 941
YK G EN ADALSR K + +V EW D++ ED K+L + T G+
Sbjct: 1105 YKSGKENLVADALSRSPNLKEEQCLPITVVVPEWVQDIKRSYEEDIFAHKILSLIETDGD 1164
Query: 942 SAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEG 1001
Y+L+ G L YK RI + + + + +L+ +H + GGH+GI TY RI LFYW G
Sbjct: 1165 PERHYKLESGLLKYKGRIYVGETTEIRMLLLEAYHASYFGGHSGIRATYHRIKQLFYWPG 1224
Query: 1002 MKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTIL 1061
+K +++Y+++C CQ K E ++ G L PL +P WT I+MDFI GLPK+ GKD IL
Sbjct: 1225 LKKQVEHYIRECPTCQITKAEHIHIPGLLNPLEVPDMAWTHITMDFIEGLPKSQGKDVIL 1284
Query: 1062 VVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFK 1121
VVVDR TKYAHF+ALSHPY +++ ++F+ + +LHG P IV+DRDRVF S F+ E+FK
Sbjct: 1285 VVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHKLHGMPMVIVTDRDRVFTSNFFQEIFK 1344
Query: 1122 LAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSA 1181
KL+FS+A+HPQTDGQTE VN+C+E+YLR +T +P++W WL+ AE+WYNT YH++
Sbjct: 1345 TQKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTS 1404
Query: 1182 IKTTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQAN 1241
I+ TPF+ALYG PP I + +E ++ LIL++LKS++ +AQ R++ A+
Sbjct: 1405 IQMTPFQALYGYPPPQITEFAIPCNMSEEARVTLEDKALILQKLKSSIGEAQRRIKFYAD 1464
Query: 1242 KHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEG 1301
K R + E+GD+VYLK+QPY+ ++ R + KL +YYGP+ +I K+ AYKLQLP+G
Sbjct: 1465 KGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQLPDG 1524
Query: 1302 SQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTR---ENRDGDLEVLI 1358
+ +HPVFH+S LKK + A P A+ + ++K EP A++ R + + + LI
Sbjct: 1525 AGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLI 1584
Query: 1359 RWKDLPTFEDSWEDFSKLLDQFPNHQ 1384
W++L E +WED S + FPN Q
Sbjct: 1585 LWENLTPAEATWEDASYIQAAFPNFQ 1610
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 1052 bits (2721), Expect = 0.0
Identities = 561/1402 (40%), Positives = 833/1402 (59%), Gaps = 56/1402 (3%)
Query: 13 GRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLE 72
G R++IP+F+G D W+ + E+FF ++ + + + + + RAL WF
Sbjct: 95 GPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQV 154
Query: 73 RAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVME-YRENFE----LLAAPMRNADRE 127
AW + + RF A +VKQ G+ +E Y + FE L+ +
Sbjct: 155 IAWPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKRDHPYLQEQ 214
Query: 128 VLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKDLQ 187
L F+ GL+ +IK ++ L E A + + + ++ G +
Sbjct: 215 YLTSCFIGGLRADIKYDVCGQKPQGLLETYWAA---NARKMVGNFNRNRNQNPLGGNQGR 271
Query: 188 NKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLI 247
N G EG + E+K C+ C + W H C +K
Sbjct: 272 NANHRGQNRGEGDRREEK-------------------KCWFCKEPWFPRHQCKIKQAIHA 312
Query: 248 LMEVEEDEEEEEIFEEAEDGEFVLEGK-------------VLQLSLNSKEGLTSNRSFKV 294
L+E ++ +E++E D E E + ++ +S + +G + +F V
Sbjct: 313 LLEEDDGQEDKETSNTGGDEEEKKETEESATSENESPTEELMYISQTAVQGTSRPDTFSV 372
Query: 295 KGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLK 354
KI R + L+D G+T+ F+ QD + P+ T V V G + + + ++
Sbjct: 373 LIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVMVPDIS 432
Query: 355 LEVQGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGE-- 412
E+QG F +L L G +++LG DW+ + I + ++ I+ +++G K++L +
Sbjct: 433 YEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISLDLKQRILG-ITKGNKVILLQDFT 491
Query: 413 -PSVCRVTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEV-PEGMRKILEEYPEVFQE 470
P+ + K ++ ++ A G + E + E V PE + I++++P V +E
Sbjct: 492 KPNK-HFQISGKRLEKMLKKGALGMVIQVNVMSETVEEEGHVIPEDISDIIQQFPAVLKE 550
Query: 471 PKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSS 530
PKGLPP+R DH I LQ GA PNIRPYR P YQK +E ++ E++ S I+ S SP+SS
Sbjct: 551 PKGLPPKRECDHVINLQSGAVPPNIRPYRVPHYQKEAMENIINELIESKEIQTSDSPYSS 610
Query: 531 PAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQI 590
PA++V+KKDG WR CVDYR LN T+ +KFP+PII++LLDE+ A +FSKLDL+SGYHQI
Sbjct: 611 PAVMVRKKDGSWRMCVDYRQLNAQTVKNKFPMPIIEDLLDELNGARIFSKLDLRSGYHQI 670
Query: 591 RMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILI 650
RM E+D+ KTAFRTH GHYEY V+PFGLTN P+TFQ+LMN VL P+LR+FVLVFFDDILI
Sbjct: 671 RMAEKDVHKTAFRTHLGHYEYQVMPFGLTNDPATFQSLMNHVLAPFLRRFVLVFFDDILI 730
Query: 651 YSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDM 710
YSK H +H+++V+Q L++N+LV KKC+FG + YLGHVISQ GVA DP K+ +
Sbjct: 731 YSKTRAEHLEHVKLVMQALQDNHLVIKLKKCAFGLASVSYLGHVISQDGVATDPKKVGKI 790
Query: 711 LDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKE 770
+WP PK+V +R FLG+TGYYRRF++ Y + +P++ +LKKN FQW T AF LK
Sbjct: 791 KNWPTPKDVTDVRKFLGMTGYYRRFIQGYGTICRPIHDMLKKNGFQWGADQTTAFETLKH 850
Query: 771 VMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYEREL 830
+ T PVL P+FD+ F +E DA G G+GAVLMQ GRP+A+ SK L +A +S+YE+E
Sbjct: 851 KLRTSPVLALPDFDQAFTIEADACGVGIGAVLMQGGRPIAFFSKALGPKAAGQSIYEKEA 910
Query: 831 MAVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPG 890
MA++ A++KWRHY+LGSK +I TDQ+SL+F+ QR++ Q K + KLM YD+ I+YK G
Sbjct: 911 MAILEALKKWRHYVLGSKLIIKTDQQSLKFMMGQRLVEGIQHKLLLKLMEYDYTIEYKSG 970
Query: 891 IENKAADALSRKLQFSAIS------SVQCAEW-ADLEAEILEDERYRKVLQELATQGNSA 943
EN ADALSR Q A++ +V EW D++ D + K+L + T +
Sbjct: 971 KENLVADALSRLPQKEAVADRCHPMTVVIPEWIVDIQRSYENDVQAHKILSLIGTAADPD 1030
Query: 944 VGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMK 1003
Y+L+ G L YK RI + + + ++ +H ++ GGH+G+ T+ RI LFYW GM+
Sbjct: 1031 REYKLEAGLLKYKGRIYVGEATDIRRQLITTYHSSSFGGHSGMRATHHRIKMLFYWHGMR 1090
Query: 1004 LDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVV 1063
+++ ++++C CQ K E ++ G L PL IP WT I+MDFI GLPK+ GKD ILVV
Sbjct: 1091 GEVERFIRECPTCQITKSEHVHIPGLLNPLEIPDMAWTHITMDFIEGLPKSQGKDVILVV 1150
Query: 1064 VDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLA 1123
VDR TKYAHFIAL+HPY+ +++ E F+ + +LHG P I++DRDR+F S+ + E+FK
Sbjct: 1151 VDRLTKYAHFIALAHPYDVEQVVEAFMNNIHKLHGMPMVIITDRDRIFTSSLFQEIFKAM 1210
Query: 1124 GTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIK 1183
KL+FS+AYHPQ DGQTE VN+C+E+YLR +T +P +W WL+ AE+WYNT +H+AI+
Sbjct: 1211 KVKLRFSTAYHPQMDGQTERVNQCLESYLRNMTFQEPHKWYSWLALAEWWYNTTFHTAIQ 1270
Query: 1184 TTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKH 1243
TPFKA+YG PP I + + +E E+ IL +LK++L AQ+RM+ A+K+
Sbjct: 1271 MTPFKAMYGYSPPQINEFSVPCNISEEARVTIEEKEAILNKLKNSLADAQHRMKYFADKN 1330
Query: 1244 RRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQ 1303
R + EVGD+VYLK++PY+ + R + KL ++YGP+ ++ KI AYKLQLP+ +Q
Sbjct: 1331 RTERNLEVGDMVYLKLKPYRQSAFGIRGSLKLRSKFYGPFKVLQKIGQLAYKLQLPDDAQ 1390
Query: 1304 VHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEV---LIRW 1360
+HPVFH+S LKK + ++ + ++K EP A++ R + V LI W
Sbjct: 1391 IHPVFHVSQLKKHLGKHAIPMSNLPSVGPDGQIKTEPLAVLQRRMVPRKGVAVTQWLILW 1450
Query: 1361 KDLPTFEDSWEDFSKLLDQFPN 1382
++L E +WED S + FP+
Sbjct: 1451 QNLSPAEATWEDASVIQAMFPS 1472
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 1051 bits (2717), Expect = 0.0
Identities = 582/1399 (41%), Positives = 824/1399 (58%), Gaps = 48/1399 (3%)
Query: 11 VTGRR-----VDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQW 65
V GRR +D P F+G D WV E +F L ++ E K+ + M A W+Q
Sbjct: 121 VQGRRSWVPKMDFPKFDGTDVCVWVDNCETYFALYQITEGFKVSAASLNMIGDAAHWYQA 180
Query: 66 WEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNAD 125
W+++ WE ++A+ F+ + + LL + Q G+V EYR F L +R D
Sbjct: 181 WKQERGWPTWEQLREAVLNEFEINIKRAKMEELLLLTQTGTVSEYRSKFLQLVYHIRLYD 240
Query: 126 REV----LKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKR 181
L F+ GL++E++ + + + + AL E + K+
Sbjct: 241 PATSGLFLVSRFVMGLKDELRCFVAAQEPETVHQAARVALAFEGAFCNRKVAFKKDVGNV 300
Query: 182 GWKDLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSM 241
+ D +GK P Q+L + R GLCFKCG+K+ H C
Sbjct: 301 KFGD------------KGKVPVGDLWKAQQLKEY----RRTHGLCFKCGEKYSPAHTCGK 344
Query: 242 -KNYQLILMEVEEDEE--EEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKI 298
+ QL MEV ++ +EI + E + + +L LSL + G ++ S +++
Sbjct: 345 TEGAQLKTMEVSSSDDVLTDEILDVVTAFEQLPDDNML-LSLQAVAGTSATHSLQLRALA 403
Query: 299 GNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQ 358
GN+ V+IL+D G++ +FI+ DL +L + V+V NG + +Q
Sbjct: 404 GNQVVIILVDSGSSHSFINADLCSKLNLSTDPIPVSTVKVANGETLQCEAQVSEFSWWIQ 463
Query: 359 GISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPS-VCR 417
G + + +L +GG ++VLGMDWL+ + N+ + +++ QG+ + LQG S +
Sbjct: 464 GCTFVSSLKVLSMGGHDIVLGMDWLSKFSPMTCNWADRWLEFTYQGKLVKLQGIQSHQLQ 523
Query: 418 VTANWKSIKITEQQEAEGYY-LSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPP 476
+ S ++ + Q + L+ ++ VP ++ +L++Y VFQ GLPP
Sbjct: 524 YLSEVSSDQMMKWQVGNDIWALAVVDCLSSPLCDSAVPASIQDVLQKYSSVFQPSAGLPP 583
Query: 477 RRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVK 536
R DH+I L GA N RPYRY QK+EIEK V+EML SG+I S SPF+SP +LVK
Sbjct: 584 HRELDHSIPLVPGAIPVNSRPYRYSPAQKDEIEKQVQEMLESGLISRSCSPFASPVLLVK 643
Query: 537 KKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEED 596
KKD WRFCVDYR LN TI +KFP+PI+DELLDE+ FSKLDL+SGYHQIRMKE D
Sbjct: 644 KKDNTWRFCVDYRRLNAITIKNKFPLPIVDELLDELAGTRFFSKLDLRSGYHQIRMKETD 703
Query: 597 IPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNEE 656
KTAF+TH GH+++ V+PFGLTNAP+TFQ LMN + PYLRKFVLVF DDIL+YS + E
Sbjct: 704 EEKTAFKTHHGHFQFRVMPFGLTNAPATFQCLMNSIFEPYLRKFVLVFMDDILVYSPSLE 763
Query: 657 LHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIP 716
H HL VLQVL+++ L A KCSF ++ YLGH+IS GVA DP K + M DWP+P
Sbjct: 764 THAIHLDTVLQVLQQHQLSAKLSKCSFAASQLEYLGHIISADGVATDPEKTRIMRDWPVP 823
Query: 717 KEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNS-FQWTEGATQAFVKLKEVMTTV 775
V LRGFLGLTGYYR+FVKNY +A+PL LL+KN+ F WT+ A AF++LK M +
Sbjct: 824 TNVTELRGFLGLTGYYRKFVKNYGVIAKPLTVLLQKNAKFIWTDSANSAFLQLKHAMCST 883
Query: 776 PVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVL 835
PVL P+F K F+LETDA G+GAVL QEG P+A+ SK L Q S+YE+E +A+++
Sbjct: 884 PVLALPDFTKTFVLETDACATGIGAVLSQEGHPIAFYSKALGMANQKLSIYEKEFLAIMM 943
Query: 836 AVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKA 895
A+ KWR YLL F I TD +SL L DQ + E Q+K M+KL+G ++ +YK G++NK+
Sbjct: 944 AIDKWRSYLLRGPFTIKTDHQSLCHLDDQILGSELQRKAMTKLIGLQYKFQYKRGVDNKS 1003
Query: 896 ADALSRKLQFSAISSVQCAEW-ADLEAEILEDERYRKVLQELATQGNSAVGYQLKRGRLL 954
ADALSR A S +W ++ D +++L ELA + G+ L G +
Sbjct: 1004 ADALSRVGHLFATVSGPYPKWIQEVVNSYATDADAQQLLTELAVSSPNDKGFMLSGGLIK 1063
Query: 955 YKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCE 1014
D+I + S ++ FH + +GGH+GI TY R+ LF W GMK ++ +VQ+C
Sbjct: 1064 KHDKIWVGANSGLQSKLIAVFHSSPIGGHSGIHATYHRLKKLFVWTGMKQAVEEFVQQCG 1123
Query: 1015 VCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFI 1074
VCQ+ K+E G LQPLPIP W DISMDFI GLP + G +TILVVVDRFTKYAHF+
Sbjct: 1124 VCQQAKHEHCKYPGLLQPLPIPEGSWQDISMDFIEGLPLSKGANTILVVVDRFTKYAHFL 1183
Query: 1075 ALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYH 1134
+L HP++A ++AE+F+ V +L+G P SIVSDRDRVF S+FW +F G L S+AYH
Sbjct: 1184 SLKHPFSASQVAELFLDRVAQLYGMPKSIVSDRDRVFTSSFWKTLFARFGIPLNMSTAYH 1243
Query: 1135 PQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRE 1194
PQ+DGQTE VN+C+E YLRC + P +W WL A+FWYNT++H+++K +P KALYG +
Sbjct: 1244 PQSDGQTERVNQCLEMYLRCAVANTPSKWASWLPLAQFWYNTSFHTSLKCSPHKALYGSD 1303
Query: 1195 ------PPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQ 1248
P + + +D +S + L R+ L+ +L +AQN M+Q A+ R
Sbjct: 1304 PSYGLLPSLSVEASDESSSSKDATALLKARSFYSSTLQHHLARAQNHMKQVADSKRTLRV 1363
Query: 1249 YEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVF 1308
++VGD V+LK+QPY S+ R KL+ +Y+GP+PI+ ++ AYKLQLP SQVH VF
Sbjct: 1364 FQVGDSVFLKLQPYAQTSVVNRPCHKLAMKYFGPFPILERVGSVAYKLQLPPASQVHSVF 1423
Query: 1309 HISLLKKAVNAGVQSQPLPAALTEEWELKVE---PEAIMDTRENRDGD---LEVLIRWKD 1362
H+S LK +V + V P+ +L + L VE P I+D R + G+ ++V +RW
Sbjct: 1424 HVSQLKPSVPSHV---PVYTSLPDVVALDVEDLIPTEILDCRMVKKGNAAIVQVRVRWGS 1480
Query: 1363 LPTFEDSWEDFSKLLDQFP 1381
LP +WED+ + +FP
Sbjct: 1481 LPDNMATWEDYDVIRTRFP 1499
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 1012 bits (2617), Expect = 0.0
Identities = 560/1395 (40%), Positives = 803/1395 (57%), Gaps = 61/1395 (4%)
Query: 15 RVDIPMFNG-NDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWF-QWWEEQTLE 72
R D P ++G +D ++ + E FF R+ + EK+ M + + A W+ Q E++
Sbjct: 68 RPDFPHYDGKSDPLIFINRCESFFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQEDERGT 127
Query: 73 RAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGV 132
W FK+ L R+ P L P L S ++ G+V +Y++ F+ L D E +
Sbjct: 128 PTWTRFKELLNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQRVQL 187
Query: 133 FLNGLQEEIKAEMKLYPADDLAELMDRALLLE--EKNTAM------RGGKPKEEDKRGWK 184
F GL + ++++ LA M A E E+ TA+ RG P +
Sbjct: 188 FTGGLLPPLSLQVQMQNPQSLAAAMSLARQFELIEQYTAVPAKAPGRGVLPAPAPRPQLA 247
Query: 185 DLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEH--ICSMK 242
G + + +RL Q E +ER R GLCF C +K+ + H +C
Sbjct: 248 LPAPAGAAKPAPPAATAADNR--PVRRLNQAEQEERRRLGLCFNCDEKYSRGHNKVCK-- 303
Query: 243 NYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNRE 302
+L ++ EDE+EE A + E E V SL++ G+ ++ ++G
Sbjct: 304 --RLFFVDSVEDEDEE-----APEDEVDAEAPVF--SLHAVAGVAVGHPILLRVQLGATT 354
Query: 303 VLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGISI 362
++ L+D G+T NFI + + V V NG K GV ++ + ++G+
Sbjct: 355 LVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATVANGEKVACPGVLRHAPITIEGMPF 414
Query: 363 MQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCRVTANW 422
+++ L G ++VLG W+A LG + + + + +G+ + QG P+ +
Sbjct: 415 HVDLYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRALTFDLEGRTICWQGAPN-----QDG 469
Query: 423 KSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDH 482
+++ ++ + +L+ + +VF EP GLPP+R DH
Sbjct: 470 PAVRAASADDSL----------------------LGGLLDSFADVFTEPTGLPPQRGRDH 507
Query: 483 AIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGW 542
AI L++G S +RPYRYP K+E+E+ M++ GI+R S S FSSP +LVKK D W
Sbjct: 508 AIVLKQGTSPVAVRPYRYPAAHKDELERQCAAMISQGIVRRSDSAFSSPVLLVKKADSSW 567
Query: 543 RFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAF 602
RFCVDYRALN T+ D FPIP++DELLDE+ A FSKLDL+SGYHQ+RM+ EDI KTAF
Sbjct: 568 RFCVDYRALNALTVKDAFPIPVVDELLDELHGARFFSKLDLRSGYHQVRMRPEDIHKTAF 627
Query: 603 RTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNEELHKDHL 662
RTH+G YE+LV+PFGL NAP+TFQALMN VLR +LR+FVLVFFDDILIYS H HL
Sbjct: 628 RTHDGLYEFLVMPFGLCNAPATFQALMNDVLRSFLRRFVLVFFDDILIYSDTWADHLRHL 687
Query: 663 RIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGL 722
R VL VL+E+ L + KC+FG + YLGHVIS AGVA DP+K++ + +WP P+ + +
Sbjct: 688 RAVLTVLREHKLFIKRSKCAFGVDSVAYLGHVISAAGVAMDPAKVQAIREWPQPRSARAV 747
Query: 723 RGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEVMTTVPVLVPPN 782
RGFLGL GYYR+FV NY +A PL LLKK F WTE AT AF LK +++ P+L P+
Sbjct: 748 RGFLGLAGYYRKFVHNYGTIAAPLTALLKKEGFAWTEAATAAFDALKAAVSSAPILAMPD 807
Query: 783 FDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRH 842
F K F +E DAS G GAVL+Q+G P+A+ S+ ++ R +A + YEREL+ +VLAV+ WR
Sbjct: 808 FTKAFTVECDASSHGFGAVLIQDGHPLAFFSRPVAPRHRALAAYERELIGLVLAVRHWRP 867
Query: 843 YLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK 902
YL G F + TD SL++L DQR+ Q W+ KL+G+DF ++YKPG N ADALSR+
Sbjct: 868 YLWGRHFTVKTDHYSLKYLLDQRLSTIPQHHWVGKLLGFDFTVEYKPGAANTVADALSRR 927
Query: 903 LQFSAIS----SVQCAEWADLEAEILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDR 958
S S ++ + + + + LQ G A + + G +L+ R
Sbjct: 928 DTTEDASVLVLSAPRFDFIERLRQAQDVDPALVALQAEIRSGTRAGPWSMADGMVLFAGR 987
Query: 959 IVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQR 1018
+ LP S + VL+ H+ GH G+ RT R+ F++ MK +Q++V+ CEVCQR
Sbjct: 988 LYLPPASPLLQEVLRAVHEE---GHEGVQRTLHRLRRDFHFPNMKSVVQDFVRTCEVCQR 1044
Query: 1019 NKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSH 1078
K E L PAG L PLP+P WTD+++DF+ LP+ GK IL VVDRF+KY HFI L+H
Sbjct: 1045 YKAEHLQPAGLLLPLPVPQGVWTDVALDFVEALPRVRGKSVILTVVDRFSKYCHFIPLAH 1104
Query: 1079 PYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1138
PY+A+ +A+VF E+VRLHG P S+VSDRD VF S FWSE+ +L GTKL ++A+HPQ+D
Sbjct: 1105 PYSAESVAQVFFAEIVRLHGVPQSMVSDRDPVFTSAFWSELMRLVGTKLHMTTAFHPQSD 1164
Query: 1139 GQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGREPPVI 1198
GQ+E NR + YLRC+TG +P+QW +WL WAEF +NT Y ++++ TPF+ +YGR+PP I
Sbjct: 1165 GQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFVFNTAYQTSLRDTPFRVVYGRDPPSI 1224
Query: 1199 FKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLK 1258
T V V K ER+ LE+++ LE+AQ ++ +K R V ++VGD V L+
Sbjct: 1225 RSYEPGDTRVAAVAKSMEERSEFLEDIRYRLEQAQAIQKKYYDKSHRAVSFQVGDWVLLR 1284
Query: 1259 IQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVN 1318
++ SL+ + KL PRY+GPY I IN A +L LP G+++H VFHI LLKK
Sbjct: 1285 LRQRAPASLSLAVSGKLKPRYFGPYRIAEMINEVAARLALPAGARLHDVFHIGLLKKWHG 1344
Query: 1319 AGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLD 1378
A + P P + EPE ++ R R G +VL++WK +WED
Sbjct: 1345 APPDAPP-PLPNVHHGAVACEPERVIKARLAR-GVRQVLVQWKGTSAASATWEDREPFFA 1402
Query: 1379 QFPNHQLEDKLNLQG 1393
++P QLED+L L G
Sbjct: 1403 RYPALQLEDELPLDG 1417
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 1000 bits (2586), Expect = 0.0
Identities = 576/1443 (39%), Positives = 824/1443 (56%), Gaps = 74/1443 (5%)
Query: 1 HYHHRSHLRAVTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRAL 60
HY HR ++D P F+G D W K E +F ++ + + +I RA
Sbjct: 171 HYSHRVP-------KLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAA 223
Query: 61 GWFQWWEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAP 120
W + + WE F AL +F + + ++Q G+V EY E F+ L
Sbjct: 224 SWLRSTKAHVRFPNWEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNK 283
Query: 121 MRNADREV----LKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPK 176
+ D V L F GL +I+ + L DL + ALL EE K
Sbjct: 284 LLVYDPVVNMHYLTHRFTEGLYRKIRNVVLLQRPRDLESALAVALLQEEVLETADEVTGK 343
Query: 177 EEDKRGWKDL-----------------QNKGGT--GNQDTEGKQPEKKWNGG--QRLTQT 215
E K L GG G + E K+ E + + G +RL+
Sbjct: 344 EVKKSEGNSLGRSVANLRGAYPLPTPPMRSGGINMGIKSEEKKESEVRRSSGTNERLSSL 403
Query: 216 ELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDG----EFVL 271
+ Q R++ GLC+ C +KW H CS QL ++ E + E EDG + V+
Sbjct: 404 KAQRRAQ-GLCYICAEKWSPTHKCS-NTVQLHAVQ----ELFTVLHESVEDGLSTTDHVV 457
Query: 272 EGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIAT 331
E ++ +SL + +G + ++ G+I +E+LIL+D G++++FIS+ + L +
Sbjct: 458 EQTLMAVSLQAVQGTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQP 517
Query: 332 SEYVVEVGNGAKERNSGVCKNLKLEVQGISIMQHFFILGLGGTEVVLGMDWLA--SLGNI 389
V V GAK N + +QG + +L L +++LGMDWL S +
Sbjct: 518 VHVQVMVAGGAKLHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQHSPMTV 577
Query: 390 EANFQELIIQWVSQGQKMVLQGEPSVCRVTANWKSIKITEQQEAEGY--------YLSYE 441
+ + LII + G ++ L G S A+ S ++ E + + E
Sbjct: 578 DWTTKSLIIAYA--GTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLVQFCSVFALE 635
Query: 442 YQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYP 501
YQ++ +PE ++ +L E+ VF EPKGLPP R DH I L GA N+RPYRY
Sbjct: 636 YQEQ-------IPEVVQTVLTEFSSVFDEPKGLPPIRQFDHTIPLLPGAGPVNVRPYRYT 688
Query: 502 FYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFP 561
QKNEIE V+EML+ GII+ S+SPFSSP +LVKKKDG WRFCVDYR LN T+ +K+P
Sbjct: 689 PIQKNEIESQVQEMLSKGIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRHLNAITVKNKYP 748
Query: 562 IPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNA 621
+P+IDELLDE+ A FSKLDL+SGYHQIRM +D KTAF+TH GH+E+ VLPFGLT+A
Sbjct: 749 LPVIDELLDELAGAQWFSKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFEFRVLPFGLTSA 808
Query: 622 PSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKC 681
P+TFQ +MN VL LR+ VLVF DDILIYSK+ E H HL+ V Q+L ++ L + KC
Sbjct: 809 PATFQGVMNSVLATLLRRCVLVFVDDILIYSKSLEEHVQHLKTVFQILLKHQLKVKRTKC 868
Query: 682 SFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSK 741
SF Q E+ YLGH+I GV+ DP KI+ + WP P VK LR FLGL+GYYR+FV+NY
Sbjct: 869 SFAQQELAYLGHIIQPNGVSTDPEKIQVIQHWPAPTSVKELRSFLGLSGYYRKFVRNYGI 928
Query: 742 LAQPLNQLLKKNS-FQWTEGATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGA 800
L++PL LL+K + WT AF LK+ + T VL P+F PF++ETDAS KG+GA
Sbjct: 929 LSKPLTNLLRKGQLYIWTAETEDAFQALKQALITALVLAMPDFQTPFVVETDASDKGIGA 988
Query: 801 VLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSKFVIHTDQRSLRF 860
VLMQ P+A++S+ L R S YE+E +A++LAV WR YL +F I TD RSL F
Sbjct: 989 VLMQNNHPLAFLSRALGLRHPGLSTYEKESLAIMLAVDHWRPYLQHDEFFIRTDHRSLAF 1048
Query: 861 LADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSR-----KLQFSAISSVQCAE 915
L +QR+ Q K ++KL+G ++I +K GI+N AADALSR +++ SA+S V E
Sbjct: 1049 LTEQRLTTPWQHKALTKLLGLRYKIIFKKGIDNSAADALSRYPGSDRVELSALS-VAVPE 1107
Query: 916 WA-DLEAEILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKE 974
W D+ A D +Q L + + L+ G L +++R+ + +L
Sbjct: 1108 WINDIVAGYSSDPDACSKVQTLCINSGAVPNFSLRNGVLYFQNRLWVGHNVDVQQRILAN 1167
Query: 975 FHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLP 1034
H A+GGH+GI TY+R+ LF W ++ + YVQ C VCQ+ K E + G LQPLP
Sbjct: 1168 LHTAAVGGHSGIQVTYQRVKQLFAWPRLRATVVQYVQACSVCQQAKSEHVKYPGMLQPLP 1227
Query: 1035 IPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVV 1094
+P W +S+DF+ GLPK+ + ILVVVD+F+KY+HF+ L+HP++A ++AE +++ +
Sbjct: 1228 VPDHAWQIVSLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAEAYMQHIH 1287
Query: 1095 RLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRC 1154
RLHG P S++SDRDR+F ST W+ +F+LAGT+L+ SS+YHPQTDGQTE VN+C+ET+LRC
Sbjct: 1288 RLHGLPQSLISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRC 1347
Query: 1155 VTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGREPPVIFKGNDSLTSVDEVEKL 1214
+ P QW +WL+ AE+WYNT++HSA+ TTPF+ LYG +P + D++ +
Sbjct: 1348 FVHACPSQWSRWLALAEYWYNTSFHSALGTTPFEVLYGHKPRYFGLSASAACRSDDLVEW 1407
Query: 1215 TAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQK 1274
ER + ++ +L +AQ RM+QQA++HR + + VGD VYLK+QP+ +S+ R+N+K
Sbjct: 1408 LHEREKMQALIRDHLLRAQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTRANRK 1467
Query: 1275 LSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQ-SQPLPAALTEE 1333
LS R+YGP+ ++ K+ AY+L LP S +HPV H+S LKKA+ Q PLP L
Sbjct: 1468 LSFRFYGPFQVLDKVGTVAYRLDLPSSSLIHPVVHVSQLKKALAPTEQVHSPLP-VLDPT 1526
Query: 1334 WELKVEPEAIMDTRENRDGDL---EVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLN 1390
V P I+D R R G ++ +RW +WE+ +L +FP +
Sbjct: 1527 NATHVCPAQILDRRFIRKGSKLVEQIQVRWTGDAPAATTWENPQELRRRFPTAPAWGQAG 1586
Query: 1391 LQG 1393
QG
Sbjct: 1587 TQG 1589
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 997 bits (2577), Expect = 0.0
Identities = 554/1397 (39%), Positives = 815/1397 (57%), Gaps = 53/1397 (3%)
Query: 15 RVDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLER 73
+++ P ++G D W+ + E F R + E K+ + + A W+ E + E
Sbjct: 109 KLEFPTYDGKGDPLPWLNRCETF-RGQKTPETRKVWYASLHLIGDAQLWYYRIELNSGEP 167
Query: 74 AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVF 133
+W F Q + RF P + +P G L ++++ G+V Y +F LA +F
Sbjct: 168 SWRRFVQLVHTRFGPPMTDSPLGELTALRRTGTVENYVNSFLALACRDVELSESQQVQLF 227
Query: 134 LNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNT-------AMRGGKPKEEDKRGWKDL 186
GL +K ++ L L + + A E++ T A R G+
Sbjct: 228 TAGLVNPLKTDVALCRPRSLDDAIMLARAYEQRATLGPTDPSAPRTGRVPRPSLPASSAA 287
Query: 187 QNKGGTGNQDTE-----GKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSM 241
T + D GKQP +RL+ E+ +R +GLC+ C +K+ H C
Sbjct: 288 SASASTTSADVAASTAAGKQPLVSALPRKRLSPAEMAQRRSEGLCYNCDEKYVAGHRCK- 346
Query: 242 KNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNR--SFKVKGKIG 299
K++ + ++ ED +EE + E + L++ G+++ + + KV ++G
Sbjct: 347 KSFVIEVISFPEDTGDEEDSTPEAHAITLDEPSIF---LHALAGISAPKFNTIKVWARLG 403
Query: 300 NREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQG 359
++E++ L+D G+T NFI+ + + +P+ V V NG + + G C ++ +
Sbjct: 404 SQELVALLDSGSTHNFINDAIAHQASVPLQRRPGLSVAVANGDRVPSPGRCPPQRVSIGS 463
Query: 360 ISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCRVT 419
F+ L LGG ++VLG WL +LG +F + L P+ RVT
Sbjct: 464 HEFDIDFYALPLGGYDIVLGAQWLGTLGPTLWDFS-----------RQSLAFGPAHDRVT 512
Query: 420 ANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRT 479
W SI + A + + Q + T+ +L+ ++F EP GLPP R
Sbjct: 513 --WTSI---DAAPAPALAAAIDGQPGDLMTD---------LLDVLKDLFTEPHGLPPERH 558
Query: 480 TDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKD 539
H I+L+ G S +RPYRY QK+E+E+ +ML G+IR S+S FSSPA+L+KK D
Sbjct: 559 LCHRIRLEAGVSAVAVRPYRYAHIQKDELERQCDDMLRHGVIRPSSSAFSSPALLIKKCD 618
Query: 540 GGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPK 599
G WRFCVDYRALN TI DKFPIP+ +EL DE+ A F+KLD++SGYHQ+ M +D+ K
Sbjct: 619 GSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRGAKFFTKLDMRSGYHQVLMHPDDVHK 678
Query: 600 TAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNEELHK 659
TAFRTH+G +E+LV+PFGLTNAP+TFQALMN VL P+LR+FVLVFFDDILIYS + H
Sbjct: 679 TAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLLPFLRRFVLVFFDDILIYSSSWSEHL 738
Query: 660 DHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEV 719
H+R VLQ L+++ L + KC FG + YLGHVIS GVA D SK++ +LDWP+PK V
Sbjct: 739 RHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHVISGDGVAMDRSKVQAVLDWPVPKTV 798
Query: 720 KGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEVMTTVPVLV 779
+ +RGFLGL GYYRRF++++ +A PL LL+K F+W++ A AF KL+ +T PVL
Sbjct: 799 RAVRGFLGLAGYYRRFIRDFGAIAAPLTALLRKEGFRWSDEAAAAFRKLQHALTAAPVLQ 858
Query: 780 PPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQK 839
P+F++ FI+E DASG GLGAVL Q G PVA+ S ++ R + YEREL+ +V AV+
Sbjct: 859 LPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPRHAKLAAYERELIGLVKAVRH 918
Query: 840 WRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADAL 899
WR YL G +F+I TD SLRFL DQR+ Q W SKL+G+DF ++YKPG N ADAL
Sbjct: 919 WRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLLGFDFAVEYKPGTANVVADAL 978
Query: 900 SRKLQFSAISSVQCAEWADLEAEILEDERYRKVLQEL---ATQGNSAVGYQLKRGRLLYK 956
SR+ + A + V A L ++ + L L +G + K G ++ K
Sbjct: 979 SRRDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDDIIRGAKPPPWAFKDGLIVLK 1038
Query: 957 DRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVC 1016
DR+ +P+ S + VL+ H GH G +T R+ A F+ ++ +Q++V+ C C
Sbjct: 1039 DRVFIPESSPLLPAVLELAHG---HGHEGTQKTMFRLRADFHVPRDRVLVQDFVRACLTC 1095
Query: 1017 QRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIAL 1076
QRNK E L PAG LQ LP+PS W DI+MDF+ GLP+ GK IL VVDRF+K+AHFI L
Sbjct: 1096 QRNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVHGKTVILTVVDRFSKFAHFIPL 1155
Query: 1077 SHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQ 1136
SHPY A +A F ++VRLHG P+SIVSDRD VF S FW+E+F+LAG +L +SA+HPQ
Sbjct: 1156 SHPYTATTVAAAFFGDIVRLHGVPSSIVSDRDPVFTSKFWTELFRLAGVQLNLTSAFHPQ 1215
Query: 1137 TDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGREPP 1196
+DGQ+EV N+ + YLRC+TG +P+QW +WL WAE+ YNT+Y ++++TTPF +YGR PP
Sbjct: 1216 SDGQSEVTNKIIAMYLRCLTGDRPRQWLRWLPWAEYCYNTSYQASLRTTPFHVVYGRSPP 1275
Query: 1197 VIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVY 1256
+ T + V++ +R+ L ++ LE+AQ +Q +K R++ ++VGD V+
Sbjct: 1276 SLRSYEPGSTCLPAVQRSMQDRDQFLVAIRDRLEQAQQVYKQAYDKKHRELNFDVGDWVW 1335
Query: 1257 LKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKA 1316
L++ + SL R KL P++YGPY I+A I AY+L+LP G+++H VFH+ LLK
Sbjct: 1336 LRLLHRPMASLDTRGRGKLGPKFYGPYQIVACIGSVAYRLRLPPGARLHDVFHVGLLKPF 1395
Query: 1317 VNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKL 1376
+ P P T+ ++ +EP+++ +R R G +VL++WK+ P + SW +
Sbjct: 1396 RGEPPSTLP-PLPPTQHGQVCLEPQSVSRSRLAR-GVRQVLVQWKNKPAADASWLSLDEF 1453
Query: 1377 LDQFPNHQLEDKLNLQG 1393
+P+ QLED+L L+G
Sbjct: 1454 RALYPDFQLEDELLLEG 1470
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 995 bits (2572), Expect = 0.0
Identities = 549/1393 (39%), Positives = 800/1393 (57%), Gaps = 44/1393 (3%)
Query: 15 RVDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLER 73
R + P ++G D ++ + E FF V AE+ M ++D A W+ ++
Sbjct: 67 RPEFPKYDGKTDPLAFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDNEGTP 126
Query: 74 AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVF 133
WE FK+ L R+ P L P L + ++ +V +Y++ F+ L + +F
Sbjct: 127 TWERFKELLNLRYGPPLRSVPLFELSACRRTSTVEDYQDRFQALLPRAGRLEEAQQVQLF 186
Query: 134 LNGLQEEIKAEMKLYPADDLAELMDRALLLE-------EKNTAMRGGKPKEEDKRGWKDL 186
GL + +++ L E M A E T+ RG P + +
Sbjct: 187 TGGLLPPLSLQVQQQKPASLEEAMSLARQFELMEPYLFPATTSARGVLPTPAPRPSTGPV 246
Query: 187 QNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEH--ICSMKNY 244
K EG+ P K RL+Q + +ER R GLC+ C +K+ + H +C
Sbjct: 247 V-KPAPATVTVEGR-PVK------RLSQAQQEERRRLGLCYNCDEKYSRSHNKVCK---- 294
Query: 245 QLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVL 304
+L +E EE ++ E+ + E +E V SL++ G+ + ++ +G ++
Sbjct: 295 RLFFVEGGAIEEGDDTVEDDTE-EATVEAPVF--SLHAVAGIPLGKPILLQVTLGAASLV 351
Query: 305 ILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGISIMQ 364
L+D G+T NFI +D + +PV V NG K GV + + +QG++
Sbjct: 352 ALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVLRRAPITIQGMAFDV 411
Query: 365 HFFILGLGGTEVVLGMDWLASLGNIEA-NFQELIIQWVSQGQKMVLQGEPSVCRVTANWK 423
+++ L G ++VLG W+A LG A + + + QG+ + Q P R +
Sbjct: 412 DLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVSFQHQGRTVSWQSLPPHQRADVHAV 471
Query: 424 SIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHA 483
S T A G S TE + +G+ L + +VF EP+GLPP R DHA
Sbjct: 472 STG-TSLVAATGSSSS----TPAPTTEPALLDGL---LGSFDDVFAEPRGLPPPRGRDHA 523
Query: 484 IQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWR 543
I L GA +RPYRYP K+E+E+ M+ G+IR STS FSSP +LVKK DG WR
Sbjct: 524 IHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQGLIRRSTSAFSSPVLLVKKADGSWR 583
Query: 544 FCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFR 603
FCVDYRALN TI D +PIP++DELLDE+ A F+KLDL+SGYHQ+RM+ ED+ KTAFR
Sbjct: 584 FCVDYRALNAITIKDAYPIPVVDELLDELHGAKFFTKLDLRSGYHQVRMRAEDVAKTAFR 643
Query: 604 THEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNEELHKDHLR 663
TH+G YE+LV+PFGL NAP+TFQALMN +LR YLR+FVLVFFDDILIYS H H+R
Sbjct: 644 THDGLYEFLVMPFGLCNAPATFQALMNDILRIYLRRFVLVFFDDILIYSNTWADHLRHIR 703
Query: 664 IVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLR 723
VL +L+++ L + KC+FG I YLGH+I GV+ DP+K++ ++DWP P+ + +R
Sbjct: 704 AVLLLLRQHRLFVKRSKCAFGVSSISYLGHIIGATGVSMDPAKVQAVVDWPQPRSARTVR 763
Query: 724 GFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEVMTTVPVLVPPNF 783
GFLGL GYYR+FV +Y +A PL L KK F+W++ AF LK +TT PVL P+F
Sbjct: 764 GFLGLAGYYRKFVHDYGTIAAPLTALTKKEGFRWSDEVATAFHALKHAVTTAPVLALPDF 823
Query: 784 DKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHY 843
KPF++E DAS G GAVL+Q+ P+A+ S+ ++ R +A + YEREL+ +VLA++ WR Y
Sbjct: 824 VKPFVVECDASTHGFGAVLLQDKHPLAFFSRPVAPRHRALAAYERELIGLVLAIRHWRPY 883
Query: 844 LLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK- 902
L G FV+ TD SL++L DQR+ Q W+ KL+G+DF ++YK G N ADALSR+
Sbjct: 884 LWGRAFVVRTDHYSLKYLLDQRLATIPQHHWVGKLLGFDFTVEYKSGASNVVADALSRRD 943
Query: 903 LQFSAISSVQCAEWADLE--AEILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIV 960
A+ ++ + +E E +++ G + + L+ G +++ R+
Sbjct: 944 TDEGAVLALSAPRFDYIERLRAAQTTEPALVAIRDAIQAGTRSAPWALRDGMVMFDSRLY 1003
Query: 961 LPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNK 1020
+P S + +L H GH G+ RT R+ F+ M+ +Q +V+ C+ CQRNK
Sbjct: 1004 IPPSSPLLHEILAAIH---TDGHEGVQRTLHRLRRDFHSPAMRRVVQEFVRACDTCQRNK 1060
Query: 1021 YEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPY 1080
E L+P G L PLP+P+ W DI +DF+ LP+ GK IL VVDRF+KY HFI L+HPY
Sbjct: 1061 SEHLHPGGLLLPLPVPTTVWADIGLDFVEALPRVGGKTVILTVVDRFSKYCHFIPLAHPY 1120
Query: 1081 NAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQ 1140
A+ +A+ F ++VRLHG P S+VSDRD VF S+FW E+ +L GTK+ ++A HPQ+DGQ
Sbjct: 1121 TAESVAQAFYADIVRLHGIPQSMVSDRDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQ 1180
Query: 1141 TEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGREPPVIFK 1200
TE N+ + YLRC TG +P+QW +WL WAE+ YNT Y ++++ TPF+ +YGR+PP+I
Sbjct: 1181 TEAANKVIVMYLRCFTGDRPRQWVRWLPWAEYIYNTAYQTSLRDTPFRVVYGRDPPIIRS 1240
Query: 1201 GNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQ 1260
T V V + A+R+ L +++ LE+AQ ++ +K R V YEVGDLV L+++
Sbjct: 1241 YEPGETRVAAVARSMADRDEFLADVRYRLEQAQATHKKYYDKGHRAVSYEVGDLVLLRLR 1300
Query: 1261 PYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAG 1320
SL + S KL PRY+GPY ++ INP A +L+LP +++H VFH+ LLKK V A
Sbjct: 1301 HRAPASLPQVSKGKLKPRYFGPYRVVEVINPVAVRLELPPRAKLHDVFHVGLLKKFVGAA 1360
Query: 1321 VQSQP-LPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQ 1379
S P LPA + EPE + +R R G +VL+ WK +WED ++
Sbjct: 1361 PPSPPALPA--VHHGAIDPEPERVTRSRLAR-GVRQVLVHWKGESAASATWEDLDTFKER 1417
Query: 1380 FPNHQLEDKLNLQ 1392
+P QLED+L L+
Sbjct: 1418 YPAFQLEDELALE 1430
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 988 bits (2553), Expect = 0.0
Identities = 555/1416 (39%), Positives = 798/1416 (56%), Gaps = 87/1416 (6%)
Query: 15 RVDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLER 73
++D P ++G+ D W+ + E+FFR R ++ + ++ A W+ E+
Sbjct: 472 KIDFPTYDGSVDPLNWLNQCEQFFRGQRTLVTDRTWLASYHLKGAAQTWYYALEQDEGMP 531
Query: 74 AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGVF 133
W FK+ RF P + L + +V +Y + F + R D + +F
Sbjct: 532 TWGRFKEVCTLRFGPPVRGTRLSELARLPFTSTVQDYADRFNAMLGHTRKLDAQQKAELF 591
Query: 134 LNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGW-------KDL 186
+ GL + I+A++ + DL M A E++ A P ++ + L
Sbjct: 592 VGGLPDHIRADVAIRDPQDLQSAMYLARAFEQRAAAQTTPPPARGFRQSRPGLPAPPRPL 651
Query: 187 QNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQL 246
Q P + + +RLT E QER R+GLCF C + + + H+C +L
Sbjct: 652 TAPPTAAAQPAGTAAPARPF---RRLTPAEQQERRRQGLCFNCDEPYVRGHVCP----RL 704
Query: 247 ILMEVEEDEEEEEIFEEAEDGEFVLEGK--------VLQLSLNSKEGLTSNRSFKVKGKI 298
+E +D ++E EE D + LE + + +SL++ G+ + + + I
Sbjct: 705 FYLE-NDDYIDDEPQEEGADLQIALEQEPPSRAAAIIPTVSLHALAGVRTPNAMLLPVSI 763
Query: 299 GNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQ 358
++ L+D G+T+NF+S L+ L++P V+V NG G+ +++ L V
Sbjct: 764 NGHRLVALVDSGSTTNFMSVGLMSRLQLPSTPHPTIKVQVANGDNIPCQGMARSVDLRVG 823
Query: 359 GISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQG------- 411
L LG +V+LG ++L LG I + L + + G+ ++ G
Sbjct: 824 TEQFSIDCIGLTLGTFDVILGFEFLRLLGPILWDCDRLSMSFTKGGRHIIWSGLGAPGAV 883
Query: 412 --EPSVCRVTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQ 469
+P+ C V++ T Q + +L ++ VF
Sbjct: 884 PPQPAACVVSS-------TPTQPL-----------------------LDDLLRQFELVFA 913
Query: 470 EPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFS 529
EP+GLPP R DH I L GA+ +RPYRYP QK+E+E+ ML GIIR STSPFS
Sbjct: 914 EPQGLPPARPYDHRIHLLPGAAPVAVRPYRYPQLQKDELERQCSAMLAQGIIRPSTSPFS 973
Query: 530 SPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQ 589
+P +LV+K D WRFC+DYRALN T DKFPIP++DELLDE+ A F+KLDL+SGYHQ
Sbjct: 974 APVLLVRKPDNSWRFCIDYRALNAKTSKDKFPIPVVDELLDELHGAHFFTKLDLRSGYHQ 1033
Query: 590 IRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDIL 649
+RM D+ KTAFRTHEGHYE+LV+PFGL+NAP+TFQALMN VLRPYLRK+VLVFFDDIL
Sbjct: 1034 VRMHPADVEKTAFRTHEGHYEFLVMPFGLSNAPATFQALMNDVLRPYLRKYVLVFFDDIL 1093
Query: 650 IYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKD 709
IYSK H H+ IVL L+++ L + KCSFG + YLGHVIS AGVA D +K++
Sbjct: 1094 IYSKTWAEHLQHISIVLHALRDHQLHLKRSKCSFGARSVAYLGHVISAAGVAMDAAKVEA 1153
Query: 710 MLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLK 769
+ WP P +GLRGFLGL GYYR+F++++ +A PL +LL++++F W + AF +LK
Sbjct: 1154 VSSWPAPHSARGLRGFLGLAGYYRKFIRDFGVIAAPLTRLLRRDAFTWDDDTQAAFQQLK 1213
Query: 770 EVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERE 829
+TT PVL PNF+K F+++ DASG G GAVL Q PVA+ S+ R + YERE
Sbjct: 1214 TALTTGPVLQMPNFEKTFVVDCDASGTGFGAVLHQGAGPVAFFSRPFVTRHLKLAAYERE 1273
Query: 830 LMAVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKP 889
L+ +V AV+ WR YL G F + TD SL++L DQR+ Q +W+SKL G+DFE++Y+P
Sbjct: 1274 LIGLVQAVRHWRPYLWGRHFAVRTDHYSLKYLLDQRLSTVPQHQWLSKLFGFDFEVEYRP 1333
Query: 890 GIENKAADALSRK----LQFS----------AISSVQCAEWADLEAEILEDERYRKVLQE 935
G N AADALSR+ LQ S A+S A D+ ++ Q+
Sbjct: 1334 GRLNVAADALSRRDAELLQPSAGELGAAAALALSGPSFAFLDDIRRATATSPDSSRLCQQ 1393
Query: 936 LATQGNSAVGYQLKRGRLLYKDRIVLPK-GSTKILTVLKEFHDTALGGHAGIFRTYKRIS 994
L G ++L+ G LL+ RI +P G + +L GH GI +T R+
Sbjct: 1394 L-QDGTLTAPWRLEDGLLLHGSRIYVPNHGDLRHQAILLAHS----AGHEGIQKTLHRLR 1448
Query: 995 ALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKA 1054
A FY G + + ++V+ C CQRNK E L PAG LQPL +PSQ W DISMDFI GLPK
Sbjct: 1449 AEFYVPGDRTLVADWVRTCTTCQRNKTETLQPAGLLQPLQVPSQVWADISMDFIEGLPKV 1508
Query: 1055 MGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLST 1114
GK IL VVDRF+KYAHFI L HPY A +A F +VRLHGFP+SIVSDRD VF
Sbjct: 1509 GGKSVILTVVDRFSKYAHFIPLGHPYTAASVARAFFDGIVRLHGFPSSIVSDRDPVFTGH 1568
Query: 1115 FWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWY 1174
W ++FK AG L+ S+A+HPQTDGQ+EVVN+ + YLRCVTG +P+ W WLSWAE+ Y
Sbjct: 1569 VWRDLFKCAGVSLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRPRAWVDWLSWAEYCY 1628
Query: 1175 NTNYHSAIKTTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQN 1234
NT++H+A++ TPF+ +YGR PP I E+L +R+ IL E++ L +AQ
Sbjct: 1629 NTSFHTALRATPFEVVYGRPPPPILPYQAGSARTAAAEELLRDRDNILAEVRQRLVQAQQ 1688
Query: 1235 RMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAY 1294
++ + RD++ GD V+L++ ++SL R+ KL PRY GP+ ++ +I AY
Sbjct: 1689 LSKRYYDAGHRDMELADGDWVWLRLLHRPVQSLEPRAKGKLGPRYAGPFRVLERIGKVAY 1748
Query: 1295 KLQLPEGSQVHPVFHISLLKKAVNAGVQSQP-LPAALTEEWELKVEPEAIMDTRENRDGD 1353
+L+LPEG+++H VFH+ LLK+ + + LP + L P ++ ++ R G
Sbjct: 1749 RLELPEGARLHDVFHVGLLKRHKGEPPEQRAGLPP--VQNGRLLPAPLKVLRAQQRR-GT 1805
Query: 1354 LEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKL 1389
+L++W+ L E +WE +P+ QLED+L
Sbjct: 1806 WHILVQWQGLSPEEATWEPLDDFRGLYPDFQLEDEL 1841
>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 987 bits (2551), Expect = 0.0
Identities = 562/1397 (40%), Positives = 795/1397 (56%), Gaps = 49/1397 (3%)
Query: 19 PMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPF 78
P FNG++ W + E +F + + +++ + A W Q Q W
Sbjct: 151 PQFNGDNPQLWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGATWFEL 210
Query: 79 KQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMR----NADREVLKGVFL 134
+ RF Q + + Q SV +Y + F+ + + + D F+
Sbjct: 211 CDRVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDPAYFVTKFV 270
Query: 135 NGLQEEIKAEMKLYPADDLAELMDRALLLEE-------------KNTAMRGGKPKEEDKR 181
+GL++ I+ + + DL ALL EE + T KP
Sbjct: 271 DGLKDHIRVVVMVQRPQDLDSACTVALLQEEALEGVQSVSNKKNETTTFLKTKPSHNLTS 330
Query: 182 GWKDLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSM 241
++ T +D G + K G R KGLCF CG+KWG++H C+
Sbjct: 331 PTFQARSIPFTNIEDKRGVEFSK---GRDDKVSALRSYRRSKGLCFVCGEKWGRDHKCAT 387
Query: 242 KNYQLILME-----VEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKG 296
QL ++E ++ D EE E A + E E ++ +S + G S++S +++G
Sbjct: 388 -TVQLHVVEELINALKTDPEENCNSEGAPESE---EDSLMAISFQALNGTDSSKSIRLRG 443
Query: 297 KIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLE 356
+ N E+L+L+D G+T +FI L +L V+V +G++ N
Sbjct: 444 WVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQKLNQAIKVQVADGSQLFCDSFLPNCSWW 503
Query: 357 VQGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQG---EP 413
QG S F +L LG + +LGMDWL ++ ++ I + GQ + LQG +
Sbjct: 504 SQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWVHKWIAFQHHGQAVQLQGIHPQL 563
Query: 414 SVCRVTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKG 473
S C +N ++ + E T VPE ++ IL E+ E+F EP
Sbjct: 564 STCFPISN---DQLQGMSKKGAVMCLVHLNVAETLTATTVPEIVQPILNEFQEIFSEPTE 620
Query: 474 LPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAI 533
LPP+R DH I L EGA N+RPYRY K+EIE+ V EML SG+I+ S+SPFSSPA+
Sbjct: 621 LPPKRNCDHHIPLVEGAKPVNLRPYRYKPALKDEIERQVAEMLRSGVIQPSSSPFSSPAL 680
Query: 534 LVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMK 593
LVKKKDG WR C+DYR LN T+ K+P+P+IDELLDE+ + FSKLDL++GYHQIRM
Sbjct: 681 LVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVIDELLDELAGSKWFSKLDLRAGYHQIRMA 740
Query: 594 EEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSK 653
E D KTAF+TH GHYEY V+ FGLT AP+TF + MN+ L P LRKF LVFFDDILIYS
Sbjct: 741 EGDEYKTAFQTHSGHYEYKVMSFGLTGAPATFLSAMNETLSPVLRKFALVFFDDILIYSP 800
Query: 654 NEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDW 713
ELH H+R VLQ+L + KCSF Q EI YLGHVI AGVA DP+KI+D++ W
Sbjct: 801 TLELHLQHVRTVLQLLSAHQWKVKLSKCSFAQQEISYLGHVIGAAGVATDPAKIQDVVSW 860
Query: 714 PIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKN-SFQWTEGATQAFVKLKEVM 772
P P +K LRGFLGL GYYR+FV+++ +++PL QLLKK F+WT AF +LK+ +
Sbjct: 861 PQPTTIKKLRGFLGLAGYYRKFVRHFGLISKPLTQLLKKGIPFKWTPEIESAFQQLKQAL 920
Query: 773 TTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMA 832
PVL P+F K F +ETDAS G+GAVL QE P+AY+S+ L + + S YE+E MA
Sbjct: 921 VAAPVLALPDFSKHFTIETDASDVGIGAVLSQEKHPIAYLSRALGPKTRGLSTYEKEYMA 980
Query: 833 VVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIE 892
++LAV+ WR YL +F+I TD SL L +QR+ QQK +KL+G ++I Y+ G+
Sbjct: 981 IILAVEHWRPYLQQGEFIILTDHHSLMHLTEQRLHTPWQQKAFTKLLGLQYKICYRKGVS 1040
Query: 893 NKAADALSRK----LQFSAISSVQCAEWADLEAEILEDERYRKVLQELATQGNSAVGYQL 948
N AADALSR+ + +AIS + +L D + +++L ELA NS YQL
Sbjct: 1041 NAAADALSRRESPISEVAAISECIPSWMQELMQGYQLDGQSKQLLAELAISPNSRKDYQL 1100
Query: 949 KRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQN 1008
+G L YK +I + + ++ E H T LGGH+G TY+++ +LF W GMK I+
Sbjct: 1101 CQGILKYKGKIWVGNNTALQHKLVNELHATPLGGHSGFPVTYRKVKSLFAWPGMKKLIKE 1160
Query: 1009 YVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFT 1068
+Q C+VC + K + G LQPLP+P+ W IS+DFI GLP++ + ILVVVD+F+
Sbjct: 1161 QLQSCQVCLQAKPDRARYPGLLQPLPVPAGAWQTISLDFIEGLPRSSHYNCILVVVDKFS 1220
Query: 1069 KYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLK 1128
KY+HFI LSHP+NA +A+ F+K + +LHG P +I+SDRD++F S FW ++F GT L
Sbjct: 1221 KYSHFIPLSHPFNAGGVAQEFMKNIYKLHGLPRAIISDRDKIFTSQFWDQLFSKFGTDLH 1280
Query: 1129 FSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFK 1188
SSAYHPQ+DGQTE VN+C+E YLRC + P +W WL AEFWYNT++HS + TPF+
Sbjct: 1281 MSSAYHPQSDGQTERVNQCLEIYLRCFVHAAPHKWSSWLYLAEFWYNTSFHSTLNKTPFE 1340
Query: 1189 ALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQ 1248
LYG P G D + ++ + ER + + L+ +L +AQ +M+ QA+K R Q
Sbjct: 1341 VLYGYTPSHFGIGLDD-CQIADLHEWHTERKFMQQLLQQHLNRAQQQMKHQADKKRSFRQ 1399
Query: 1249 YEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVF 1308
+ VGD VYLK+QPY +A+R+ KL+ RYYGP+ +++++ AY +QLP S +HPVF
Sbjct: 1400 FAVGDWVYLKLQPYVQTFVAQRACHKLAFRYYGPFQVMSRVGTVAYHIQLPATSSIHPVF 1459
Query: 1309 HISLLKKAVNAGVQSQ-PLPAALTEEWELKVEPEAIMDTRENRDGD---LEVLIRWKDLP 1364
H+S LK AV + Q LP +L L+V P +D R + G+ L++L W
Sbjct: 1460 HVSQLKAAVGFSKKVQDELPTSL---GALQV-PFQFLDKRLVKKGNRSVLQLLTHWYHSS 1515
Query: 1365 TFEDSWEDFSKLLDQFP 1381
E +WED L +FP
Sbjct: 1516 PSESTWEDMEDLFARFP 1532
>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
gi|25403233|pir||G86474 probable protein gypsy/Ty3
element polyprotein [imported] - Arabidopsis thaliana
Length = 1447
Score = 986 bits (2550), Expect = 0.0
Identities = 550/1385 (39%), Positives = 812/1385 (57%), Gaps = 95/1385 (6%)
Query: 15 RVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 74
++D P F+G+ W+ KVE FF + E K++MV I + A W + + +
Sbjct: 116 KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLD 175
Query: 75 ----WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLK 130
W + + L RF+ A +P L +++ ++EY + FEL+ + N E L
Sbjct: 176 VFFNWPEYVKLLKDRFEDAC-DDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLV 233
Query: 131 GVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKDLQNKG 190
V+L GL+ + + ++++ + + + E + PK+ W +
Sbjct: 234 SVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYERAH-------PKKTVSSTWSQKGTRS 286
Query: 191 GTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILME 250
G G R + Q+ GLC+ C +K+ EH K QL M+
Sbjct: 287 G----------------GSYRPVKEVEQKSDHLGLCYFCDEKFTPEHYLVHKKTQLFRMD 330
Query: 251 VEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCG 310
V DEE E+ E D + + + Q+S+N+ G++ ++ VKG + R++ ILID G
Sbjct: 331 V--DEEFEDAVEVLSDDDHE-QKPMPQISVNAVSGISGYKTMGVKGTVDKRDLFILIDSG 387
Query: 311 ATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGISIMQHFFILG 370
+T NFI + +L V + V V +G K G K ++Q + ++
Sbjct: 388 STHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIP 447
Query: 371 LGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCRVTANWKSIKITEQ 430
L G ++VLG+ WL +LG I F++L +Q+ + Q++ L G +T + + IK +
Sbjct: 448 LQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGI-----ITGSVRDIKAHKL 502
Query: 431 QEAEGYYLSY------EYQKEEEK--------TEAEVPEGM-RKILEEYPEVFQEPKGLP 475
Q+ + + E +EE+ T V E + + I+EE+P+VF EP LP
Sbjct: 503 QKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEPTDLP 562
Query: 476 P-RRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAIL 534
P R DH I+L EGA+ N RPYRY +QK+EI+K+V++M+ SG I+ S+SPF+SP +L
Sbjct: 563 PFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFASPVVL 622
Query: 535 VKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKE 594
VKKKDG WR CVDY LN T+ D+F IP+I++L+DE+G +VVFSK+DL++GYHQ+RM
Sbjct: 623 VKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDP 682
Query: 595 EDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKN 654
+DI KTAF+TH GH+EYLV+ FGLTNAP+TFQ+LMN V R +LRKFVLVFFDDILIYS +
Sbjct: 683 DDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSS 742
Query: 655 EELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWP 714
E HK+HLR+V +V++ + L A K +LGH IS + DP+KI+ + +WP
Sbjct: 743 IEEHKEHLRLVFEVMRLHKLFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWP 794
Query: 715 IPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEVMTT 774
P VK +RGFLG GYYRRFV+N+ +A PL+ L K + F W+ A AF LK V+
Sbjct: 795 TPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDGFCWSLEAQSAFDTLKAVLCN 854
Query: 775 VPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVV 834
PVL P FDK F++ETDA G+G+ AVLMQ+G P+AY+S+ L + S+YE+EL+A +
Sbjct: 855 APVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFI 914
Query: 835 LAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENK 894
AV+KWRHYLL S F+I TDQRSL++L +QR+ QQ+W+ KL+ +D+EI+Y+ G EN
Sbjct: 915 FAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENL 974
Query: 895 AADALSR----KLQFSAISSVQCAEWADLEAEILEDERYRKVLQELATQGNSAVGYQLKR 950
ADALSR ++ A+S V+C +++ D + ++ L ++ Y +
Sbjct: 975 VADALSRVEGSEVLHMALSIVECDFLKEIQVAYESDGVLKDIISALQQHPDAKKHYSWSQ 1034
Query: 951 GRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYV 1010
L K +IV+P +L+ H + +GG +G +++R+ +LFYW+GM DIQ ++
Sbjct: 1035 DILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFI 1094
Query: 1011 QKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKY 1070
+ C CQ+ K + G LQPLPIP + W D+SMDFI GLP + GK I+VVVDR +K
Sbjct: 1095 RSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKA 1154
Query: 1071 AHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFS 1130
AHF+AL+HPY+A +A+ F+ V + HG PTSIVSDRD +F S FW E FKL G +L+ S
Sbjct: 1155 AHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMS 1214
Query: 1131 SAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKAL 1190
SAYHPQ+DGQTEVVNRC+E YLRC+ ++P W KWL AE+WYNTNYHS+ + TPF+ +
Sbjct: 1215 SAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELV 1274
Query: 1191 YGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYE 1250
YG+ PP+ + V V + ER +L LK +L +AQ+RM+Q A++HR + ++
Sbjct: 1275 YGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTERTFD 1334
Query: 1251 VGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHI 1310
+GD VY+K+QPY+ +S+ R NQKLSP+Y+GPY II K
Sbjct: 1335 IGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCG-------------------- 1374
Query: 1311 SLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMD----TRENRDGDLEVLIRWKDLPTF 1366
+ V S LP+ L + +E PE I++ R+ R + VL++W P
Sbjct: 1375 ---EVMVGNVTTSTQLPSVLPDIFE--KAPEYILERKLVKRQGRAATM-VLVKWIGEPVE 1428
Query: 1367 EDSWE 1371
E +W+
Sbjct: 1429 EATWK 1433
>gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1513
Score = 975 bits (2520), Expect = 0.0
Identities = 502/1180 (42%), Positives = 741/1180 (62%), Gaps = 59/1180 (5%)
Query: 228 KCGDKWGKEHICSMKN-YQLILMEVEEDEEEEEIFEEAEDGEFVLEG-----------KV 275
K + W H C +K +L+E EE E EE+ E + E VLE ++
Sbjct: 363 KHDEAWFPGHQCKVKKALNALLLEEEEYEGTEEVGREKKAQEKVLEETEHAPEEIDQEEL 422
Query: 276 LQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYV 335
+ +S N+ +G T +F V +I R + L+D G+ S F+ Q+ + + P+++T
Sbjct: 423 MYVSQNAMQGATRPDTFSVIIQINGRRAVGLVDSGSPSTFMDQEYAIRNDCPLVSTDSKK 482
Query: 336 VEVGNGAKERNSGVCKNLKLEVQGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQE 395
V V G + ++ ++ ++QG + F ++ L G +++LG DW+ I + ++
Sbjct: 483 VVVAGGGELKSEVQVPDILYQIQGETFSNKFNLIPLKGYDIILGADWIYKYSPITLDLKK 542
Query: 396 LIIQWVSQGQKMVLQGEPSVCRVTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAE--- 452
+ +++G+K++ + + S K+ + G ++ + E+++ E
Sbjct: 543 RELG-ITKGEKVITLQDFTNTGKHLLVDSSKVDKIIRKGGLGYLFQITQVAEESDVEESI 601
Query: 453 -VPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKL 511
+P+ ++ IL+ +P V ++PKGLPP+R DH I L++GA PN+RPYR P +QK +EK+
Sbjct: 602 SIPDDIQDILQRFPTVLEKPKGLPPQRGCDHVITLKDGAIPPNLRPYRVPHHQKEAMEKI 661
Query: 512 VKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDE 571
+ E++ S I+ S SP+SSPA++V+KKDG WR CVDYR LN T+ +KFP+PII++LLDE
Sbjct: 662 IAELIESKEIQVSNSPYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIEDLLDE 721
Query: 572 IGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQ 631
+ A +F+KLDL SGYHQIRM DIPKTAFRTH GHYEY V+PFGLTNAP+TFQ+LMNQ
Sbjct: 722 LNGAKIFTKLDLMSGYHQIRMSRPDIPKTAFRTHLGHYEYQVMPFGLTNAPATFQSLMNQ 781
Query: 632 VLRPYLRKFVLVFFDDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYL 691
VL P+ RKFVLVFFDDILIYSK+ E HK+H+R+VLQVLK NNLV KKC+FG + YL
Sbjct: 782 VLAPFFRKFVLVFFDDILIYSKDREEHKEHIRLVLQVLKANNLVIKPKKCAFGLSSVSYL 841
Query: 692 GHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLK 751
GH+ISQ GVA DP K++ ++ WPIPK V LR FLG+TGYYRRF++ Y + +PL+ +LK
Sbjct: 842 GHIISQNGVATDPGKVEKIVSWPIPKNVTDLRKFLGMTGYYRRFIQGYVLICRPLHDMLK 901
Query: 752 KNSFQWTEGATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAY 811
K FQW E T+AF LK+ M + PVL P+F K F +E DA G G+GAVLMQ RP+A+
Sbjct: 902 KEGFQWGEKQTEAFKFLKQKMCSSPVLTLPDFSKEFTIEADACGTGIGAVLMQGDRPIAF 961
Query: 812 MSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQ 871
SK+L +A A+S+YE+E MA++ A++KWRHY LGSK VI TDQ+SL+ + +QR++ Q
Sbjct: 962 YSKSLGPKAAAQSIYEKEAMAILEALKKWRHYFLGSKLVIKTDQQSLKHMMNQRLVEGIQ 1021
Query: 872 QKWMSKLMGYDFEIKYKPGIENKAADALSR----KLQFSAISSVQCA--EW-ADLEAEIL 924
K + KLM YD+ I+YK G +N ADALSR +LQ +++ +W D++
Sbjct: 1022 HKLLLKLMEYDYIIEYKAGKDNVVADALSRLPQDQLQTEICNAITVVIPKWIIDVQNSYE 1081
Query: 925 EDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHA 984
D + K+L + T + Y + G L +K RI + + ++ +++++H +A GGH+
Sbjct: 1082 GDVQAHKILSMIGTNSDPDQHYSFENGILRFKGRIYVGEETSIRTNLIRDYHCSAFGGHS 1141
Query: 985 GIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDIS 1044
G+ T+ RI ALFYW G+K ++ ++++C VCQ K E ++ G L PL + WT I+
Sbjct: 1142 GMRATHHRIKALFYWPGLKKTVEMFIRECPVCQITKVEHIHIPGLLNPLEVLDMAWTHIT 1201
Query: 1045 MDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIV 1104
MDFI GLPK+ KD ILVVVDR TKYAHF+ALSHPY+ +++ E+F+ + RLHG P +I+
Sbjct: 1202 MDFIEGLPKSKWKDAILVVVDRLTKYAHFLALSHPYSVEQVVEIFMNNIHRLHGMPMAII 1261
Query: 1105 SDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWP 1164
DRDR+F S + E+FK +L+FS++YHPQTDGQTE VN+C+E+YLR +T +P QW
Sbjct: 1262 IDRDRIFTSQLFQEIFKSMKVQLRFSTSYHPQTDGQTERVNQCLESYLRNMTFQEPHQWY 1321
Query: 1165 KWLSWAEFWYNTNYHSAIKTTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEE 1224
WLS A +WYNT YH++++ TPF+ALYG PP I N+ S + + ER+L
Sbjct: 1322 SWLSLAGWWYNTTYHTSLQMTPFQALYGYPPPQI---NEFSISCNVSAEARTERSL---- 1374
Query: 1225 LKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYP 1284
VGD+VY+K+QPY+ + R + KL ++YGP+
Sbjct: 1375 -------------------------NVGDMVYIKLQPYRQTAFGIRGSLKLRSKFYGPFK 1409
Query: 1285 IIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIM 1344
++ KI AYKLQLPE + +HPVFH+S LKK + ++ + ++K +P A++
Sbjct: 1410 VLEKIGQVAYKLQLPEDASIHPVFHVSQLKKHLGQRAVPMSNLPSMGPDGQIKTQPVAVL 1469
Query: 1345 DTR---ENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFP 1381
R N + LI W++L + +WED + + +P
Sbjct: 1470 QRRMIPRNGVAVTQWLILWENLGPADATWEDAAVIQSMYP 1509
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 971 bits (2511), Expect = 0.0
Identities = 548/1401 (39%), Positives = 778/1401 (55%), Gaps = 83/1401 (5%)
Query: 16 VDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 74
+D P ++G D +V + E +F R+ E EK+ M +ED A W+ +E
Sbjct: 1 MDFPRYDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPR 60
Query: 75 WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELL---AAPMRNADREVLKG 131
W FK L RF P L P L ++ G+V EY+ +F+ L A P++ A L
Sbjct: 61 WNRFKDLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQ---LVQ 117
Query: 132 VFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKD-LQNKG 190
+F GL + ++++ LA M A +E P RG L +
Sbjct: 118 LFTGGLLPPLSHAVRIHNPQSLAAAMSLARQVELMELDKPAPVPARPAPRGLLPALPQRL 177
Query: 191 GTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEH--ICSMKNYQLIL 248
+ + +RL+Q E ER R GLC+ C +K+ + H +C Y +
Sbjct: 178 ALPAPPASAPVAKMEAKPVKRLSQEEQAERRRLGLCYNCDEKYSRGHNRVCRRIFY---I 234
Query: 249 MEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILID 308
V + E+ + +DGE + SL + G+ + +V+ +G + L+D
Sbjct: 235 DGVTLTDAEDAALDADQDGEAPV------FSLQAVAGVPICDTMQVRVMLGAVTLTALLD 288
Query: 309 CGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGISIMQHFFI 368
+T NFI+++ + + V NG K + GV + + + G F+
Sbjct: 289 TSSTHNFIAEEAARRTNLAIQPKPRLTATVANGEKIQCPGVLRQAPITIDGEEFHVDLFV 348
Query: 369 LGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKM-----VLQGEPSVCRVTANWK 423
+ L G ++VLG W+ +LG I +F + + G ++ + EP+V + A+
Sbjct: 349 MPLAGYDLVLGTQWMVTLGPITWDFTARTMSFSRHGMEVRWSDVAARPEPTVAVIAAS-- 406
Query: 424 SIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHA 483
+ +G S+E VF EP GLPP+R DH+
Sbjct: 407 ------EVLLDGLLASFE------------------------GVFAEPSGLPPQRARDHS 436
Query: 484 IQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWR 543
I L+ GA +RPYRY K+E+E ++ GI+R S S FSSP +LVKK DG WR
Sbjct: 437 IVLKPGALPVAVRPYRYLAAHKDELELQCAAIIEQGIVRRSDSAFSSPVLLVKKPDGSWR 496
Query: 544 FCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFR 603
FCVDYRALN T+ D FPIP+IDELLDE+ A F+KLDL+SGYHQ+RM+ D+ KTAF
Sbjct: 497 FCVDYRALNALTVKDAFPIPVIDELLDELHGARFFTKLDLRSGYHQVRMRPADVHKTAFH 556
Query: 604 THEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNEELHKDHLR 663
TH+G YE+LV+PFGL NAP TFQALMN VLRP+LR+FVLVFFDDILIYSK H H+R
Sbjct: 557 THDGLYEFLVMPFGLCNAPVTFQALMNDVLRPFLRRFVLVFFDDILIYSKTWADHLRHIR 616
Query: 664 IVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLR 723
VL L+ + L + KC+F + YLGHVIS+AGVA DP+K++ + DWP P+ + +R
Sbjct: 617 AVLSELQRHQLFLKRAKCAFASASVAYLGHVISEAGVAMDPAKVQAVRDWPAPRSARAVR 676
Query: 724 GFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEVMTTVPVLVPPNF 783
FLGL GYYR+FV NY +A PL LLKK+SF W+ A AF LK +TT PVL P+F
Sbjct: 677 SFLGLAGYYRKFVHNYGAIAAPLTALLKKDSFSWSGEAATAFDALKAAVTTAPVLAMPDF 736
Query: 784 DKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHY 843
KPFI+E DAS G GAVL+Q+ PVA+ S+ ++ R +A + YEREL+ V AV+ WR Y
Sbjct: 737 SKPFIVECDASSHGFGAVLVQDSHPVAFFSRPVAPRHRALAAYERELIGFVHAVRHWRPY 796
Query: 844 LLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK- 902
L G +FV+ TD SL++L DQR+ Q W+ KL+G+DF ++YKPG N ADALSR+
Sbjct: 797 LWGRRFVVKTDHYSLKYLLDQRLATIPQHHWVGKLLGFDFTVEYKPGHANAVADALSRRD 856
Query: 903 ------------LQFSAISSVQCAEWADLEAEILEDERYRKVLQELATQGNSAVGYQLKR 950
+F + ++ A+ D + +E T G+ A+ +
Sbjct: 857 TPEDGTILALSAPRFDFVDRLRHAQTTDPALVAMHEE---------LTSGSQALPWAAVD 907
Query: 951 GRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYV 1010
G + Y R+ +P S + ++ H+ GH G+ RT R+ F++ MK +Q+ V
Sbjct: 908 GMIQYSGRLYIPPASPLLPELMAAVHEE---GHEGVQRTLHRLRRDFHFPNMKQLVQDLV 964
Query: 1011 QKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKY 1070
+ C CQR K E L+PAG L PLP+P WTDI++DF+ LP+ GK IL VVDRF+KY
Sbjct: 965 RACPTCQRYKSEHLHPAGLLLPLPVPQGVWTDIALDFVEALPRVRGKSVILTVVDRFSKY 1024
Query: 1071 AHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFS 1130
HFI LSHPY+A+ +A+ F ++VRLHG P SIVSDRD VF S FW E+ L GTKL +
Sbjct: 1025 CHFIPLSHPYSAETVAQAFFADIVRLHGMPQSIVSDRDTVFTSHFWRELMWLVGTKLHMT 1084
Query: 1131 SAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKAL 1190
+A+HPQ+DGQ+E NR + YLRC+TG +P+QW +WL WAE+ +NT Y ++++ TPF+ +
Sbjct: 1085 TAFHPQSDGQSESANRVIVMYLRCLTGDRPRQWLQWLPWAEYVFNTAYQTSLRDTPFRVV 1144
Query: 1191 YGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYE 1250
YGR+PP I T V V K ER+ L +++S LE+AQ ++ +K R V Y+
Sbjct: 1145 YGRDPPSIRSYEPGDTRVAAVAKTMEERDKFLADIRSRLEQAQATQKRHYDKAHRHVTYQ 1204
Query: 1251 VGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHI 1310
VGD L+++ SL + KL PR+YGPY I IN A +L LP +++H VFHI
Sbjct: 1205 VGDWALLRLRQRAASSLPQTVAGKLRPRFYGPYRITELINDVAVRLALPPRARLHDVFHI 1264
Query: 1311 SLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSW 1370
LLKK + P P + EPE + TR R G ++LI+WK +W
Sbjct: 1265 GLLKK-FHGSPPDAPPPLPAVHHGAVVPEPERAVKTRLAR-GVRQLLIQWKGESPASATW 1322
Query: 1371 EDFSKLLDQFPNHQLEDKLNL 1391
ED + ++P+ QL D+L L
Sbjct: 1323 EDADAFIAKYPDFQLGDELAL 1343
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 970 bits (2507), Expect = 0.0
Identities = 548/1409 (38%), Positives = 778/1409 (54%), Gaps = 87/1409 (6%)
Query: 14 RRVDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLE 72
++ D P ++G D ++ K E +FR R E++ M ++D W+ E
Sbjct: 58 KKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDEGT 117
Query: 73 RAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELLAAPMRNADREVLKGV 132
W FK+ + RF P L P L ++ G+V EY F+ L D +
Sbjct: 118 PTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQRVQL 177
Query: 133 FLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKD------- 185
F GL + ++++ + LA M A +E P RG
Sbjct: 178 FTGGLLPPLSHAVRIHHPETLAAAMSLARQVELMERDRPAPPPLRAPPRGLLPAPAPRLA 237
Query: 186 ---------LQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKE 236
L Q + P +RLT E+ ER R+GLCF C +K+ +
Sbjct: 238 LPAPAQQLALPAPPAAAPQGRDAANP-------RRLTPEEMAERCRQGLCFNCNEKFTRG 290
Query: 237 HICSMKNYQLIL-MEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVK 295
H + + +E+++ E + A D E + SL++ G+ + +++
Sbjct: 291 HNRFCRRLFFVDGVEIDDVAIEGDAAAAAGDTEAPV------FSLHAVAGVPIADTIQLQ 344
Query: 296 GKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKL 355
+G+ +L L+D G+T +FI ++ +P+ ++ V NG + GV ++
Sbjct: 345 VTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANGERVACPGVIRDAAF 404
Query: 356 EVQGISIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSV 415
+ G + F++ L G +VVLG WL +LG I +F + + GQ+ +G
Sbjct: 405 TINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPIVWDFTSRSMAFQRDGQRFAWKG---- 460
Query: 416 CRVTANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLP 475
A+ + + A G L ++L Y +VF EP GLP
Sbjct: 461 ---VASTSTTHLRTLAAASGTLLD-------------------ELLVAYEDVFGEPTGLP 498
Query: 476 PRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILV 535
P R DHAI L+ ++ +RPYRYP K+E+E+ M+ G++R S SPFSSP +LV
Sbjct: 499 PPRGRDHAIVLKPSSAPVAVRPYRYPAAHKDELERQCAAMIEQGVVRRSDSPFSSPVLLV 558
Query: 536 KKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEE 595
KK DG WRFCVDYRALN T+ D FPIP++DEL A F+KLDL+SGYHQ+RM+ E
Sbjct: 559 KKADGSWRFCVDYRALNALTVKDAFPIPVVDEL----HGARFFTKLDLRSGYHQVRMRPE 614
Query: 596 DIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNE 655
D+ KTAFRTH+G YE+LV+PFGL NAP+TFQALMN VLRP+LR+FVLVFFDDILIYS+
Sbjct: 615 DVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRPFLRRFVLVFFDDILIYSETW 674
Query: 656 ELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPI 715
H HLR VL VL+++ L + KC+FG P + YLGHVIS+AGVA DP+K++ + +W +
Sbjct: 675 TDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVSYLGHVISEAGVAMDPAKVQAIHEWLV 734
Query: 716 PKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEGATQAFVKLKEVMTTV 775
P+ + +R FLGL GYYR+FV NY +A PL L KK+ F WTE AF LK +T+
Sbjct: 735 PRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTALTKKDGFSWTEDTAAAFDALKAAVTSA 794
Query: 776 PVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVL 835
PVL P+F KPF +E DAS G GAVL+Q+G PVA+ S+ + R +A + YEREL+ +V
Sbjct: 795 PVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPVAFFSRPVVLRHRALAAYERELIGLVH 854
Query: 836 AVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKA 895
AV+ WR YL G +FV+ TD SL++L DQR+ Q W+ KL+G+DF ++YKPG N
Sbjct: 855 AVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQHHWVGKLLGFDFAVEYKPGAANTV 914
Query: 896 ADALSRK------------LQFSAISSVQCAEWADLEAEILEDERYRKVLQELATQGNSA 943
ADALSR+ +F IS + A+ D L DE + G
Sbjct: 915 ADALSRRDTEEGAILALSAPRFDFISKLHDAQRQDPALTALRDE---------VSAGTRT 965
Query: 944 VGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMK 1003
+ L L Y + +P S +++ H+ GH G+ RT R+ F+ MK
Sbjct: 966 GPWALVDDLLQYNSWLYIPPASPLAREIIEATHE---DGHEGVKRTMHRLRREFHIPNMK 1022
Query: 1004 LDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVV 1063
+Q++V+ C VCQR K E L+PAG L PLP+P WTDI++DFI LP+ GK IL V
Sbjct: 1023 QLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVWTDIALDFIEALPRVRGKSVILTV 1082
Query: 1064 VDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLA 1123
VDRF+KY HFI L+HPY+A+ +A+ F E+V LHG P S+VSDRD +F STFW E+ +L
Sbjct: 1083 VDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQSMVSDRDPIFTSTFWRELMRLM 1142
Query: 1124 GTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIK 1183
GTKL ++A+HPQ+DGQ+E NR + YLRC+TG +P+QW +WL WAEF +NT Y S+++
Sbjct: 1143 GTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFIFNTAYQSSLR 1202
Query: 1184 TTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKH 1243
TPF+ +YGR+PP I T V V K ER L +++ LE+AQ + +KH
Sbjct: 1203 DTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFLFDIRYRLEQAQAVQKLHYDKH 1262
Query: 1244 RRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQ 1303
R V Y+VGD L+++ SL + KL PR+YGPY I IN A +L+LP G++
Sbjct: 1263 HRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGPYRITELINDVAVRLELPAGAR 1322
Query: 1304 VHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDL 1363
+H VFHI LLKK + P L + EPE + R R G + L++WK
Sbjct: 1323 LHDVFHIGLLKKFHGPPPGAPPALPPL-HHGAIAPEPERAVRFRLAR-GVRQALVQWKGE 1380
Query: 1364 PTFEDSWEDFSKLLDQFPNHQLEDKLNLQ 1392
+WED L ++P QLED+L+L+
Sbjct: 1381 SPASATWEDIEVLRAKYPALQLEDELSLE 1409
>gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 961 bits (2483), Expect = 0.0
Identities = 537/1391 (38%), Positives = 793/1391 (56%), Gaps = 29/1391 (2%)
Query: 15 RVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 74
RV+ P F+G++ W T E +F + VE I + + RA W Q + +
Sbjct: 174 RVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLS 233
Query: 75 WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENFELL----AAPMRNADREVLK 130
W F + L RF ++ L + Q G+V EY E F +L +A NAD
Sbjct: 234 WSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYT 293
Query: 131 GVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKDLQNKG 190
F++GL+++IKA + + +L AL+ EE TA R + + +
Sbjct: 294 MRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQEEATTARRWRRSEPSSSHAGPKTGVQL 353
Query: 191 GTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILME 250
+ T K + + +L R+ KGLC KC +KW H C+ + E
Sbjct: 354 SASTKWTSNKDSTQSASHSDKLESLRRFRRA-KGLCDKCAEKWNPGHKCAATAQLHAMEE 412
Query: 251 VEEDEEEEEIFE-EAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDC 309
V +EE+ E + E E + +S ++ G T ++ K+ G I N +LILID
Sbjct: 413 VWSLLVDEEVPESDLSPPEPAPEQLFVTISKSAWTGSTGRQTLKLNGSIQNHPLLILIDS 472
Query: 310 GATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGISIMQHFFIL 369
G++ F++ L L+ S V+V NGA + ++Q S L
Sbjct: 473 GSSHTFLNDQLRPHLQGVTSMASTLQVQVANGAMVTCHYKLLQAQWQIQNCSFTSDVSFL 532
Query: 370 GLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCRVTANWKSIKITE 429
L ++V+GMDWL S + ++ + + QG ++LQG TA + + E
Sbjct: 533 PLPYYDMVVGMDWLESFSPMRVDWAQKWLIIPYQGSSVLLQGN------TAGVPADTVIE 586
Query: 430 QQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEG 489
L + + + ++ +L+++ VF EP+GLPP R DHAI L EG
Sbjct: 587 --------LLFMESASSVSSSPDSHPAIQALLQQFSSVFAEPQGLPPSRDCDHAIPLVEG 638
Query: 490 ASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYR 549
A ++RPYRYP K++IEK V+EML+ G+I+ S S F+SP +LVKKKD WRFCVDYR
Sbjct: 639 AQPVSVRPYRYPPALKDKIEKQVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYR 698
Query: 550 ALNKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHY 609
LN T+ K+P+P+ D+L+DE+ + FSKLDL++GYHQI +K + KTAF+TH GHY
Sbjct: 699 YLNALTLKSKYPVPVFDQLIDELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHY 758
Query: 610 EYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFDDILIYSKNEELHKDHLRIVLQVL 669
E+ V+ FGLT AP+TF + MN+ L+P LRK LVFFDDILIYSK+ E H HL+ VLQ+L
Sbjct: 759 EFRVMAFGLTGAPNTFLSAMNETLKPVLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLL 818
Query: 670 KENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLT 729
+N KC F + YLGH+IS+ GV+ PSKI+ + W +P K LR FLGL
Sbjct: 819 LSDNWKVKLSKCEFAKTNTAYLGHIISEQGVSTYPSKIQAISSWAVPTSAKELRCFLGLA 878
Query: 730 GYYRRFVKNYSKLAQPLNQLLKKNS-FQWTEGATQAFVKLKEVMTTVPVLVPPNFDKPFI 788
G+YR+FVK++ +++PL LLKK++ F WT ++AF LK+ + T PVL P+F +PF
Sbjct: 879 GFYRKFVKHFGIISRPLFDLLKKHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFC 938
Query: 789 LETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSK 848
+ TDAS G+GAVLMQ G P+A++SK L + Q S YE+E MA++LA+ +WR YL ++
Sbjct: 939 IHTDASYYGVGAVLMQSGHPLAFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAE 998
Query: 849 FVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRKLQFSAI 908
F+I+TD RSL L +QR+ QQK +KL G ++I Y+ G++N AADALSRK+Q +
Sbjct: 999 FIIYTDHRSLAQLNEQRLHTIWQQKMYTKLAGLQYKIVYRKGVDNGAADALSRKVQEDSH 1058
Query: 909 SSVQCAEWADLEAEILE----DERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKG 964
E++E D +++L +L + L +G + +K+RI L
Sbjct: 1059 CCAISHSVPTWLQEVVEGYDKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGN 1118
Query: 965 STKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEAL 1024
VL+ HDTA+GGH+G TY ++ +FYW GM+ D+ YVQ C VCQ++K +
Sbjct: 1119 LQLQQKVLQAMHDTAVGGHSGAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRA 1178
Query: 1025 NPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKE 1084
G LQPL +P Q W IS+DFI GLP++ + ILVVVD+F+KY HF+ L HP+ A +
Sbjct: 1179 KYPGLLQPLEVPPQAWHTISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAK 1238
Query: 1085 IAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVV 1144
+A VF+ V +LHG P +I+SDRDR+F S+FW ++F++ GT L SS+YHPQ+DGQTE +
Sbjct: 1239 VARVFLDNVYKLHGLPVNIISDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERL 1298
Query: 1145 NRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGREPPVIFKGNDS 1204
N+C+ET+LRC + P +W WLS AE+WYNT HS + TPF+ LYG P D+
Sbjct: 1299 NQCLETFLRCYVHTCPSRWSAWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDT 1358
Query: 1205 LTSVDEVEKLTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKL 1264
+ E+E ER L+ + +K +L +AQ+RM++QA+K R + + VGD VYLK+QPY
Sbjct: 1359 VVPQPELETWLKERELMTKVIKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQ 1418
Query: 1265 KSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQ 1324
S+A RSN KLS +++GP+ I ++ AY+L LP S +HP+FH+S LK+ + G +
Sbjct: 1419 SSVATRSNHKLSFKFFGPFQITDRLGSVAYRLALPASSSIHPIFHVSQLKRVI--GRDQR 1476
Query: 1325 PLPAALTEEWELKVEPEAIMDTRENRDGDL--EVLIRWKDLPTFEDSWEDFSKLLDQFPN 1382
P + ++V + +R G+L +V + W + +WED L +FP
Sbjct: 1477 ASPQLPQDVGPIQVPTRILQRRFIDRGGELIAQVKVVWSGMTEDLATWEDVEALRARFPK 1536
Query: 1383 HQLEDKLNLQG 1393
+ D+ +G
Sbjct: 1537 ALIWDQAGARG 1547
>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18958673|gb|AAL82656.1| retrotransposon protein,
putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 1338
Score = 878 bits (2268), Expect = 0.0
Identities = 439/937 (46%), Positives = 612/937 (64%), Gaps = 8/937 (0%)
Query: 460 ILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSG 519
+LEE+ +VF EP GLPP R H IQL G + +RPYRYP K+E+E+ + M +G
Sbjct: 375 LLEEFADVFTEPTGLPPARDRSHRIQLLPGTAPVAVRPYRYPVRHKDELERQCRVMEENG 434
Query: 520 IIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELLDEIGAAVVFS 579
+I STS FSSP +LVKK DG WRFCV+YRALN+ T+ DK+PIP++DELLDE+ A +FS
Sbjct: 435 LIHRSTSAFSSPVLLVKKADGSWRFCVNYRALNERTVKDKYPIPVVDELLDELHGAAIFS 494
Query: 580 KLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRK 639
KLDL+SGYHQ+RM +DI KTAFRTH+G YE+LV+PFGLTNA +TFQ+LMN VLRP+LR+
Sbjct: 495 KLDLRSGYHQVRMHPDDIDKTAFRTHDGLYEFLVIPFGLTNALATFQSLMNDVLRPFLRR 554
Query: 640 FVLVFFDDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAG 699
FVLVFFDDIL+YS H HLR V L L KCSFG P + YLGH+ISQ G
Sbjct: 555 FVLVFFDDILVYSPTWTSHLQHLRTVFTALWAAQLFVKHTKCSFGDPSVAYLGHIISQHG 614
Query: 700 VAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTE 759
A D +KI+ + +WP P+ K LRGFLGL YYR+F++++ +A PL QLL+K+SF W
Sbjct: 615 FAMDAAKIQAVAEWPRPRSPKELRGFLGLASYYRKFIQDFGSVAAPLTQLLRKDSFAWAP 674
Query: 760 GATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDR 819
AF +LK +TT PVL P+F++PF++E DASG G GAVL Q P+AY S+ ++ R
Sbjct: 675 ATDDAFQRLKLALTTTPVLSLPDFNRPFVVECDASGTGFGAVLHQGEDPIAYFSRPIATR 734
Query: 820 AQAKSVYERELMAVVLAVQKWRHYLLGSKFVIHTDQRSLRFLADQRIMGEEQQKWMSKLM 879
A + YEREL+++V AV+ WR YL G +F++ TD SL+FL DQR+ Q W+SKL+
Sbjct: 735 HHALAAYERELISLVQAVRHWRPYLWGRQFIVKTDHYSLKFLLDQRLSTIPQHHWVSKLL 794
Query: 880 GYDFEIKYKPGIENKAADALSRKLQFSAISSVQCAEWADLEAEIL---EDERYRKVLQEL 936
G+DF ++YKPG +N AADALS + + + V DL +I + + + L++
Sbjct: 795 GFDFVVEYKPGKQNAAADALSCRAAPDSQAFVLSTPTFDLLKDIRTAGDTDPALQALRDE 854
Query: 937 ATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISAL 996
G + + G + YK RI +P GS + V+ HD GH GI +T R+
Sbjct: 855 INSGTRTTPWAVIDGLVTYKRRIYIPPGSPWVSVVVAAAHD---DGHEGIQKTLHRLRRD 911
Query: 997 FYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMG 1056
F+ + + +++Q C CQRNK + L+PAG L PLP+PS W+D++MDF+ GLP+ G
Sbjct: 912 FHTPDDRRVVHDHIQGCLTCQRNKTDHLHPAGLLLPLPVPSAIWSDVAMDFVEGLPRVGG 971
Query: 1057 KDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPTSIVSDRDRVFLSTFW 1116
K IL VVDRF+KYAH IAL+H Y A+ +A F ++VRLHG P SIVSDRD VF S FW
Sbjct: 972 KSVILTVVDRFSKYAHLIALAHSYTAETVARAFFVDIVRLHGVPESIVSDRDPVFTSAFW 1031
Query: 1117 SEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNT 1176
+ +F TKL S+A+HPQ+DGQ++ VN+ + LRC+TG + +QW +WL WAE+ YNT
Sbjct: 1032 TALFTATCTKLHRSTAFHPQSDGQSKAVNKAIAMCLRCMTGDRSRQWLRWLPWAEYIYNT 1091
Query: 1177 NYHSAIKTTPFKALYGREPPVIFKGNDSLTSVDEVEKLTAERNLILEELKSNLEKAQNRM 1236
++H+A++ TPFK +YGR+PP I + S V V + ER+ L +++ LE+AQ
Sbjct: 1092 SFHAALRDTPFKLVYGRDPPSIRAYDASELRVAAVAQSIEERDAFLADVRLRLEQAQQYA 1151
Query: 1237 RQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKL 1296
++ ++ R+V +EVG V+L+++ SL + KL PR+YGPY ++A IN AY+L
Sbjct: 1152 KRYYDQKHREVSFEVGAWVWLRVRHRVPASLPEAVKGKLRPRFYGPYRVVAVINEVAYRL 1211
Query: 1297 QLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEV 1356
LP G+++H VFH+ LLK V S PL + + P ++ R R G ++
Sbjct: 1212 ALPPGTRLHDVFHVGLLKPFVGVS-PSAPLALPPIQHGAAQPVPRQVLRARLAR-GVRQL 1269
Query: 1357 LIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLNLQG 1393
L++W+ LP SWED +++P+ QL D+L ++G
Sbjct: 1270 LVQWEGLPASATSWEDLDDFRNRYPSFQLADELLIEG 1306
Score = 52.4 bits (124), Expect = 1e-04
Identities = 29/101 (28%), Positives = 48/101 (46%), Gaps = 1/101 (0%)
Query: 15 RVDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLER 73
++D P F+G D ++ + E+FFR R E K+ + + D A W+ E
Sbjct: 110 KLDFPKFDGRGDPLPFLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLERDHEPP 169
Query: 74 AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYRENF 114
+W F + L R+ P L P G L + ++ +V +Y E F
Sbjct: 170 SWHRFSELLNMRYGPPLHSTPLGELAACRRTTTVDDYAERF 210
Score = 40.4 bits (93), Expect = 0.43
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 256 EEEEIFEEAEDGEFVLE----GKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGA 311
E++++ E+ D + + L++SL++ G+ ++ + + +G+ ++ LID G
Sbjct: 222 EDQQLGEDDTDNDSATDQADAAATLRISLHAATGVRASDAMHITAHLGDTDLYTLIDSGL 281
Query: 312 TSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQG 359
F+SQD + V V NG K GV ++ L++ G
Sbjct: 282 MHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAG 329
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,421,644,530
Number of Sequences: 2540612
Number of extensions: 108077765
Number of successful extensions: 434363
Number of sequences better than 10.0: 36615
Number of HSP's better than 10.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 33510
Number of HSP's that attempted gapping in prelim test: 360722
Number of HSP's gapped (non-prelim): 41173
length of query: 1393
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1252
effective length of database: 505,134,102
effective search space: 632427895704
effective search space used: 632427895704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0029a.5