BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0027.9
(1611 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 369 e-100
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 306 5e-81
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 289 5e-76
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 288 1e-75
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 283 3e-74
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 270 3e-70
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 270 4e-70
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 266 3e-69
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 265 7e-69
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 265 7e-69
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 265 1e-68
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 263 3e-68
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 262 6e-68
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 262 6e-68
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 257 2e-66
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 255 8e-66
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 252 6e-65
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 246 5e-63
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 245 8e-63
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 244 2e-62
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 369 bits (947), Expect = e-100
Identities = 191/515 (37%), Positives = 290/515 (56%), Gaps = 5/515 (0%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
TL+ G + + I ++ SM + W G ++SF P+RG+RQGDP+SPYLFVLC+ERL
Sbjct: 455 TLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERL 514
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
I+ + WK V G +SH+ FADD++LFAEASV Q +I +L FCEASG
Sbjct: 515 CHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASG 574
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QKVS KS++FFS NV I GI T LG YLG+P+L ++KE F ++++
Sbjct: 575 QKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLER 634
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V +L+GWK +LS AGR++LT++ L S+P +VM +P+ ++R R F+WGST
Sbjct: 635 VSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTM 694
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ +K HL+SW IC PK +GG+G R +N+A +AK+ W +L DK+SLW +V++ KYK
Sbjct: 695 EKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV 754
Query: 1400 NPGLRAPPL-PKPPDSPTWKGICKAW-PIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITS 1457
L P+P S TW+ + ++ KGV W G+G + FW D W+ P+
Sbjct: 755 GGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWL-LQEPLVE 813
Query: 1458 FMPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWG 1517
D+ E + +L WN L LP+ V RR+ ++ DE W
Sbjct: 814 LGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWK 873
Query: 1518 LSPDGAFSLNSVFLILLPP--PPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKER 1575
+ DGAF++ S + +L + F +W P R + +W + ++TN ER
Sbjct: 874 GTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVER 933
Query: 1576 VKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
V+R+++ ++ C C EE+++H +RDC ++ +W
Sbjct: 934 VRRHLSENAICSVCNGAEETILHVLRDCPAMEPIW 968
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 306 bits (783), Expect = 5e-81
Identities = 176/492 (35%), Positives = 262/492 (52%), Gaps = 37/492 (7%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
TL+ G + +I+ I C++ M + W G ++SF P RG+RQGDPISPYLFVLCIERL
Sbjct: 407 TLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERL 466
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
I+ A G WK+ + + GP +SH+ FADD++LFAEASV
Sbjct: 467 CHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASV-----------------A 509
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QKVS KS++FFS NV I GI T LG YLG+P+L ++K+ F ++++
Sbjct: 510 QKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLER 569
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V +LSGWK +LS AGR++LT++ L+S+P + M + +P + ++++++ RNF+WGST
Sbjct: 570 VSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTV 629
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ RK HL+SW +C PK GGLG + +N+A +AK+ W +L DK SLW +VL+ KYK
Sbjct: 630 EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKV 689
Query: 1400 NPGLRAPPL-PKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSF 1458
+ L PK S TW+ I G G++ + WI + T
Sbjct: 690 TDVHDSSWLVPKATWSSTWRSI---------------GVGLREGVAK-GWILHEPLCTRA 733
Query: 1459 MPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGL 1518
+ E NA + + E W+ L Q LP V R+ A+ + D W
Sbjct: 734 TCLLSPEELNARVE-EFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRISWQG 792
Query: 1519 SPDGAFSLNSVFLILLPPPPVS--YEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERV 1576
+ DG F++ S +++L E F+ +W P R + LW ++TN ERV
Sbjct: 793 TSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAPERVRVFLWLVGQQVIMTNVERV 852
Query: 1577 KRNMTYDSTCPR 1588
+R++ C R
Sbjct: 853 RRHIGDIEVCQR 864
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 289 bits (740), Expect = 5e-76
Identities = 145/445 (32%), Positives = 245/445 (54%), Gaps = 9/445 (2%)
Query: 1172 WKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFF 1231
WK + + GP +SH+ FADD++LFAEASV Q +I +L FC ASGQKVS KS++FF
Sbjct: 189 WKPISLSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFF 248
Query: 1232 SKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVST 1291
S+NV I GI T LG YLG+P+L ++K+ F +++K+ +L+GWK
Sbjct: 249 SENVSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRF 308
Query: 1292 LSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKCHLISWDT 1351
LS AGRV+LT++ L S+P + M T +P ++++ R+F+WGS+ RK HLISW
Sbjct: 309 LSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKR 368
Query: 1352 ICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLRAPPLPKP 1411
+C P+ +GGLG + +N+A ++K+ W ++ D SLW ++++ Y+ +R K
Sbjct: 369 VCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQ-DVRDGAWTKV 427
Query: 1412 PD--SPTWKGICKAW-PIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHSEAWN 1468
S TW+ + ++ G+ W +G+G ++ FW D W+ N+ P+ + W
Sbjct: 428 RSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKWLTNI-PLAELLVQEPPAGWK 486
Query: 1469 ANLPVAAFLENG-DWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDGAFSLN 1527
+ NG W+ +++ + ++++ + D WG S DG F ++
Sbjct: 487 -GMRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVS 545
Query: 1528 SVFLILL--PPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDST 1585
+ + L P ++ F+ VW+ P R + LW A ++TN+ER +R+++ +
Sbjct: 546 TTYSFLTRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTI 605
Query: 1586 CPRCLEEEESVMHAIRDCECVKHVW 1610
C C +ES++H +RDC ++ +W
Sbjct: 606 CQVCKGAKESIIHVLRDCPAMEGIW 630
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 288 bits (736), Expect = 1e-75
Identities = 169/521 (32%), Positives = 263/521 (50%), Gaps = 20/521 (3%)
Query: 1101 LQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLA 1160
LQ GF + + + I C++S + GN E F P+RG+R+GDP++PYLF+ + L+
Sbjct: 581 LQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLS 640
Query: 1161 LTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQ 1220
++ + + + KV RS P +SHLLFADD +LF +A V QA I E L + +GQ
Sbjct: 641 NILQRRRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQ 700
Query: 1221 KVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKV 1280
++P + + FS + D I L +++T LG+P + E F + ++
Sbjct: 701 LINPKECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERF 760
Query: 1281 RKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTAD 1340
K+L+ W LS AG+ +L +S +LP Y M +P C+E E+L RNF WG
Sbjct: 761 EKRLTDWSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKG 820
Query: 1341 HRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFN 1400
+K H I+W+ + SPK GGLGF D+R NQA +A+ AW ++ DSL +VLKAKY N
Sbjct: 821 EKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPN 880
Query: 1401 PGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMP 1460
+ P SPTWKGI +++KG+ W +G+G K WR++W+ + +
Sbjct: 881 GTITDTAFPS-VSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAH----GENLK 935
Query: 1461 DVHSEAWNANLPVAAFLENGDWNWNS--LSQLLPDDVCRRIRALNPPHLERGEDEPFWGL 1518
+ + WN + V + WN + ++ ++ I + P E ED P W
Sbjct: 936 ILEKKTWNRVIYVRELIVTDTKTWNEPLIRHIIREEDADEILKIRIPQREE-EDFPAWHY 994
Query: 1519 SPDGAFSLNSVFLILLPPPPVSYE------------KTFEHVWNFRGPPRAQAVLWKTAH 1566
G FS+ SV+ + + E K +++VW P+ + WK A
Sbjct: 995 EKTGIFSVRSVYRLAWNLARKTSEQASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQ 1054
Query: 1567 GRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVK 1607
RL T + + KR + TCP C ++EE+ HA +C K
Sbjct: 1055 DRLATWENKKKRKIEMFGTCPICGQKEETGFHATVECTLAK 1095
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 283 bits (724), Expect = 3e-74
Identities = 169/524 (32%), Positives = 262/524 (49%), Gaps = 18/524 (3%)
Query: 1099 ATLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIER 1158
A ++ GF +K+ I CI++++ I G P RG+RQGDPISPYL++LC E
Sbjct: 46 AIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEG 105
Query: 1159 LALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEAS 1218
L+ I+ + + FK R+GP+ISHLLFA D ++F +A++++ + + +L + +AS
Sbjct: 106 LSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKAS 165
Query: 1219 GQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLID 1278
GQ V+ KS + F K + ++Q+ LGI KT G YLG+P F+F+
Sbjct: 166 GQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQ 225
Query: 1279 KVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGST 1338
+ +K+ W LS AG+ L +S + ++P Y M +P+ + +I R F W +T
Sbjct: 226 TMDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNT 285
Query: 1339 ADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYK 1398
K ++W + PK GGL DL+ N A +AK +W IL SL +V KAKY
Sbjct: 286 KVKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKY- 344
Query: 1399 FNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSF 1458
F S WK I ++ +G+K+ GNG + W+DNW+P P
Sbjct: 345 FPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPP---- 400
Query: 1459 MPDVHS-EAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWG 1517
P V + ++ + L V+ L G WN + L +L+ + IRA+ P + D W
Sbjct: 401 RPPVGTCDSIYSQLKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIR-PSITGANDAITWI 459
Query: 1518 LSPDGAFSLNSVFLIL----------LPPP-PVSYEKTFEHVWNFRGPPRAQAVLWKTAH 1566
+ DG +S+ S + +L LP P VS + F ++W PP+ + W++AH
Sbjct: 460 YTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAH 519
Query: 1567 GRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L T +R + D TC RC E E V H + C K +W
Sbjct: 520 NALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIW 563
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 270 bits (690), Expect = 3e-70
Identities = 148/457 (32%), Positives = 239/457 (51%), Gaps = 43/457 (9%)
Query: 1157 ERLALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCE 1216
ERL I A + WK+ + + GP ISH+ FADD++LFAEASV Q +I IL FC
Sbjct: 326 ERLCHMIDRAVAVKEWKSIGLSQGGPKISHICFADDLILFAEASVSQIRVIRRILETFCI 385
Query: 1217 ASGQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFL 1276
ASGQKVS KS++FFSKNV I GI+ T LG YLG+P+L ++K+ F +
Sbjct: 386 ASGQKVSLDKSKIFFSKNVSRDLEKLISKESGIKSTRELGKYLGMPILQRRINKDTFGEV 445
Query: 1277 IDKVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWG 1336
+++V +L+GWK +LSFAGR++LT+S L +P + M T +P + +++L R F+ G
Sbjct: 446 LERVSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLG 505
Query: 1337 STADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAK 1396
S+A+ +K HL++WD +C PK +GGLG + +N+A ++K+ W ++ D+ SLW ++L++K
Sbjct: 506 SSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSK 565
Query: 1397 YKFNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPIT 1456
Y+ GLR ++ +G +W +GNG + FW DNW+ + I
Sbjct: 566 YRV--GLR--------------------EVVSRGSRWVVGNGRDILFWSDNWLSHEALIN 603
Query: 1457 SFMPDVHSEAWNANLPVAAFLENG-DWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPF 1515
+ ++ + L V NG W + + + + A+ + D
Sbjct: 604 RAVIEIPNS--EKELRVKDLWANGLGWKLDKIEPYISYHTRLELAAVVVDSVTGARDRLS 661
Query: 1516 WGLSPDGAFSLNSVFLILLP--PPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNK 1573
WG S DG F++ S + +L P + F+ +W R + LW
Sbjct: 662 WGYSADGVFTVKSAYRLLTEDHDPRPNMAAFFDRLWRVVALERVKTFLW----------- 710
Query: 1574 ERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
++ S C C +E+++H ++DC + +W
Sbjct: 711 -----HIGDTSVCQVCKGGDETILHVLKDCPSIAGIW 742
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 270 bits (689), Expect = 4e-70
Identities = 165/531 (31%), Positives = 259/531 (48%), Gaps = 36/531 (6%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF D +I LI C+ S + G PSRG+RQGDP+SPYLFV+C E L ++
Sbjct: 597 GFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQ 656
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A + KV R P ISHLLFADD + + + + + I I+ + ASGQ+V+
Sbjct: 657 SAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNY 716
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS ++F K++ + + + LGI++ G+YLG+P ++L D++ KK+
Sbjct: 717 LKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKV 776
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
GW+ + LS G+ L ++ ++LP Y M IP +CQ+IE + F W + + R
Sbjct: 777 LGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGL 836
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKY--KFNPG 1402
H +W + PK GGLGF ++ N A + K W ++ +KDSL +V K++Y K +P
Sbjct: 837 HWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDP- 895
Query: 1403 LRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDV 1462
L AP +P S WK I +A ++++G++ +GNG ++ W D WI P
Sbjct: 896 LNAPLGSRP--SFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWI-------GAKPAK 946
Query: 1463 HSEAWNANLPVAAFLENG-------------DWNWNSLSQLLPDDVCRRIRALNPPHLER 1509
++A + V+ + N DWNWN +S L PD+ I AL P E
Sbjct: 947 AAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKET 1006
Query: 1510 GEDEPFWGLSPDGAFSLNSVFLILLP-------PPPV---SYEKTFEHVWNFRGPPRAQA 1559
D W S G +S+ S + ++ P V S + F+ +W PP+
Sbjct: 1007 -RDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHH 1065
Query: 1560 VLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
LW+ + L R++ + +C RC E+V H + C + W
Sbjct: 1066 FLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTW 1116
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 266 bits (681), Expect = 3e-69
Identities = 160/522 (30%), Positives = 255/522 (48%), Gaps = 23/522 (4%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF ++ LI C+S+ + I G SESF+P RG+RQGDP+SPYLF+LC E + +
Sbjct: 798 GFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLS 857
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
+GR ++ + PS+SHLLFADD ++ A+ +A + IL + E SGQ ++
Sbjct: 858 KTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINK 917
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS V FS N + ++ AL +Q+ T YLG+P+ + F++L +++ +++
Sbjct: 918 DKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRI 977
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
GWK LS AG+ L ++ +P + M + +C +I ++ + W + K
Sbjct: 978 QGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKM 1037
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H +SW+ + PK+ GGLGF D+ N A +AK W ++ D DSL ++VL+AKY F G
Sbjct: 1038 HWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKY-FPLGDC 1096
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHS 1464
P S TW+ I K +++ G+ W +G+G K++ W D WIP P
Sbjct: 1097 FRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTP---- 1152
Query: 1465 EAWNANLPVAAFLE--NGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDG 1522
N V ++ G W+ + LSQ ++ I+++ P H+E ED W G
Sbjct: 1153 RGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI-PVHVEM-EDVLAWHFDARG 1210
Query: 1523 AFSLNSVFLILLPP---------PPVSY-----EKTFEHVWNFRGPPRAQAVLWKTAHGR 1568
F++ S + + P VS + ++ +W P + + LW+ H
Sbjct: 1211 CFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNT 1270
Query: 1569 LLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L R M D+ C C E H C+ VK VW
Sbjct: 1271 LALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVW 1312
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 265 bits (678), Expect = 7e-69
Identities = 162/518 (31%), Positives = 252/518 (48%), Gaps = 18/518 (3%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF++K+I I C++S S + G P+RG+RQGDP+SP LFVLC E L +
Sbjct: 575 GFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILN 634
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A G+ + S++HLLFADD +L +A+ + + + L + + SGQ ++
Sbjct: 635 KAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINL 694
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS + F KNV D I GI G YLG+P S ++ F F+ +K++ +L
Sbjct: 695 NKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRL 754
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
+GW TLS G+ L +S L+LP YVM +P +CQ++ + +F W S RK
Sbjct: 755 TGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKI 814
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H +SW + PKDQGG GF DL+ NQA +AK AW +L +K SL+++V +++Y N
Sbjct: 815 HWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFL 874
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHS 1464
+ P S W+ I ++ +G++ +GNG K W D W+ + ++ P
Sbjct: 875 SATRGSRP-SYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDG---SNRRPLNRR 930
Query: 1465 EAWNANLPVAAFLE--NGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDG 1522
N +L V+ ++ + +WN N L L P I P + ED W S +G
Sbjct: 931 RFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK--EDSFCWLHSHNG 988
Query: 1523 AFSLNSVFLILL----------PPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTN 1572
+S+ + + L S F+ +WN P+ + LWK HG +
Sbjct: 989 LYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVE 1048
Query: 1573 KERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
R + D C C E E++ H + +C + VW
Sbjct: 1049 DRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVW 1086
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 265 bits (678), Expect = 7e-69
Identities = 162/518 (31%), Positives = 252/518 (48%), Gaps = 18/518 (3%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF++K+I I C++S S + G P+RG+RQGDP+SP LFVLC E L +
Sbjct: 596 GFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILN 655
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A G+ + S++HLLFADD +L +A+ + + + L + + SGQ ++
Sbjct: 656 KAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINL 715
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
KS + F KNV D I GI G YLG+P S ++ F F+ +K++ +L
Sbjct: 716 NKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRL 775
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
+GW TLS G+ L +S L+LP YVM +P +CQ++ + +F W S RK
Sbjct: 776 TGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKI 835
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H +SW + PKDQGG GF DL+ NQA +AK AW +L +K SL+++V +++Y N
Sbjct: 836 HWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFL 895
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHS 1464
+ P S W+ I ++ +G++ +GNG K W D W+ + ++ P
Sbjct: 896 SATRGSRP-SYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDG---SNRRPLNRR 951
Query: 1465 EAWNANLPVAAFLE--NGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDG 1522
N +L V+ ++ + +WN N L L P I P + ED W S +G
Sbjct: 952 RFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFK--EDSFCWLHSHNG 1009
Query: 1523 AFSLNSVFLILL----------PPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTN 1572
+S+ + + L S F+ +WN P+ + LWK HG +
Sbjct: 1010 LYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVE 1069
Query: 1573 KERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
R + D C C E E++ H + +C + VW
Sbjct: 1070 DRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVW 1107
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 265 bits (677), Expect = 1e-68
Identities = 160/531 (30%), Positives = 255/531 (47%), Gaps = 32/531 (6%)
Query: 1101 LQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLA 1160
L GF +I + C+SS + G ++ PSRG+RQGDPISPYLF+LC E L+
Sbjct: 608 LSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLS 667
Query: 1161 LTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQ 1220
+ G + K GR GP ISHLLFADD + FA+A + L ++C ASGQ
Sbjct: 668 CLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQ 727
Query: 1221 KVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKV 1280
K++ KS +FF K D + L + YLG+P + + F FL +++
Sbjct: 728 KINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERI 787
Query: 1281 RKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTAD 1340
K+++GW LS AG ++ ++ ++P YVM IP+ +C++++ + WG
Sbjct: 788 WKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDG 847
Query: 1341 HRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFN 1400
+K H SW + +PK GG+GF + T NQA + + W +L D DSL ++VLK +Y N
Sbjct: 848 KKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPN 907
Query: 1401 PGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGP--ITSF 1458
PK P S TW+ + ++ KGV+W +G+G + + DNWIP P +T+
Sbjct: 908 SSFWEAAQPKSP-SFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTL 966
Query: 1459 MPDVHSEAWNANLPVAAFLENGD---WNWNSLSQLLPDDVCRRIRALNPPHLERGE-DEP 1514
P ++A + L N D W+ + + L P D+ + I L P G+ D
Sbjct: 967 SP-FPTDA------TVSCLMNEDARCWDGDLIRSLFPVDIAKEI--LQIPISRHGDADFA 1017
Query: 1515 FWGLSPDGAFSLNSVFLIL---------------LPPPPVSYEKTFEHVWNFRGPPRAQA 1559
W G +S+ S + + + + +K ++ +W P + +
Sbjct: 1018 SWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKI 1077
Query: 1560 VLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
LW+ AH L T + +R++ C C +++V H C +W
Sbjct: 1078 TLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIW 1127
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 263 bits (673), Expect = 3e-68
Identities = 158/517 (30%), Positives = 258/517 (49%), Gaps = 16/517 (3%)
Query: 1101 LQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLA 1160
LQ FGF +I+ + C++S S G P+RG+RQGDP+SP LF+LC E L+
Sbjct: 488 LQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLS 547
Query: 1161 LTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQ 1220
A + +V +GP ++HLLFADD + F+++ + + EIL + +ASGQ
Sbjct: 548 GLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQ 607
Query: 1221 KVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKV 1280
++ KS V FS Q+ L I+K G YLG+P ++ F +IDK+
Sbjct: 608 SINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKI 667
Query: 1281 RKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTAD 1340
R+K W LS AG+ + ++ L S+P Y M +P +C++I+ L F W + D
Sbjct: 668 RQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPD 727
Query: 1341 HRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFN 1400
RK ++W + +PK+ GGLGF D+ N + +AKL W +L +SL +++L KY +
Sbjct: 728 VRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHS 787
Query: 1401 PGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMP 1460
LP P S W+ I I+++G+ W + NG KVS W D W+ P+ P
Sbjct: 788 SSFMECKLPSQP-SHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGP 846
Query: 1461 DVHSEAWNANLPVAAFLENG--DWNWNSLSQLLP--DDVCRRIRALNPPHLERGEDEPFW 1516
+ + +L V+A + W+WN ++ +LP +++ +++ P RG D+ W
Sbjct: 847 ALRE---HQDLRVSALINQNTLQWDWNKIAVILPNYENLIKQL----PAPSSRGVDKLAW 899
Query: 1517 GLSPDGAFSLNS---VFLILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNK 1573
G ++ S + + P P + ++W + P+ + ++WK A L
Sbjct: 900 LPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGI 959
Query: 1574 ERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ V+R+++ + C RC ES H CE VW
Sbjct: 960 QLVRRHISPSAACHRC-GAPESTTHLFFHCEFAAQVW 995
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 262 bits (670), Expect = 6e-68
Identities = 164/520 (31%), Positives = 253/520 (48%), Gaps = 24/520 (4%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF +++ I CI++ + + G +F PSRG+ QG P+SP+LF+ + L L ++
Sbjct: 108 GFAHRWVRWIIVCITTVRYSVKFNGTLLSTFAPSRGLCQGVPLSPFLFLFIADGLPLLLE 167
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
D + G K+ R P ISHLLFADD +LF +A QA + E++ ++ A+GQ ++P
Sbjct: 168 DKVAQGALSPVKICRQAPGISHLLFADDTLLFFKADNVQAQAVKEVITDYALATGQLINP 227
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
K + F ++ D I L I + YLG P + K F L +++ K+L
Sbjct: 228 AKCSIMFGESSPPQTRDVIRVTLQIANSGFEDRYLGFPTPEGRMCKGKFQSLQERIWKRL 287
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
W + LS G+ L +S + ++P YVM +P VC+E+ +L RNF WG RK
Sbjct: 288 IIWGENLLSSGGKEVLIKSVIQTIPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGKRKT 347
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H SW+ + PK GGLGF D R NQA +A+ AW ++ + DSL +VLKAKY F G
Sbjct: 348 HWKSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKY-FPNGSL 406
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHS 1464
SP WK I ++++G+ W +GNG V WRD W+P F +
Sbjct: 407 VDTSFGGNASPVWKAIEYGLSLLKEGIIWRIGNGKSVRIWRDPWLPR-----DFSRRPIT 461
Query: 1465 EAWNANLPVAAFL--ENGDWNWNSLSQL-LPDDVCRRIRALNPPHLERGEDEPFWGLSPD 1521
N L + L ENG W+ ++Q+ LP D A+ + +++ F PD
Sbjct: 462 RKGNCRLKWVSELLSENGAWDETRVNQVFLPVDA----EAICSIRVSSRQEDDFVAWHPD 517
Query: 1522 --GAFSLNSVF-----LILLPPPPVSYEKTFEHVWNF----RGPPRAQAVLWKTAHGRLL 1570
G FS+ S + L+ + S + +WN P + + W+ A L
Sbjct: 518 KHGKFSVRSAYGLACNLVNMETSSSSSSARCKRMWNLIWQTNAPQKVRIFAWRAATNCLA 577
Query: 1571 TNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
T + + KR + C C E+E H + C +++W
Sbjct: 578 TMENKAKRKLEQSDICLVCGLEKEDTKHVLCRCPDARNLW 617
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 262 bits (670), Expect = 6e-68
Identities = 162/524 (30%), Positives = 259/524 (48%), Gaps = 24/524 (4%)
Query: 1101 LQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLA 1160
L GF +++ I C+++ + + G SF P+RG+RQG+P+SP+LF+ + L+
Sbjct: 1233 LNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLS 1292
Query: 1161 LTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQ 1220
L +K+ + K+ R P IS+LLFADD +LF +A +A ++ E+L N+ + +GQ
Sbjct: 1293 LLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQ 1352
Query: 1221 KVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKV 1280
++P K + F + ++ I + L +++ YLG P + K F L K+
Sbjct: 1353 LINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKI 1412
Query: 1281 RKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTAD 1340
K++ W + LS G+ L ++ + ++P YVM P V E+ ++ RNF WG+
Sbjct: 1413 AKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNG 1472
Query: 1341 HRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFN 1400
R+ H +WD++ K GGLGF D + NQA + + AW ++ +SL QVLKAKY F
Sbjct: 1473 RRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKY-FP 1531
Query: 1401 PGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMP 1460
G SPTW GI +++KG+ W +GNG V WRD WIP S P
Sbjct: 1532 HGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPWIPR---DLSRRP 1588
Query: 1461 DVHSEAWNANLPVAAFL--ENGDWNWNSLSQL---LPDDVCRRIRALNPPHLERGEDEPF 1515
V S+A N L + L E+G W+ ++Q + D+ ++I LE ED
Sbjct: 1589 -VSSKA-NCRLKWVSDLIAEDGTWDSAKINQYFLKIDADIIQKI--CISARLE--EDFIA 1642
Query: 1516 WGLSPDGAFSLNSVFLILLPPPPVS---------YEKTFEHVWNFRGPPRAQAVLWKTAH 1566
W G FS+ S + + L ++ K++E +W P + + W+ A
Sbjct: 1643 WHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAWRVAS 1702
Query: 1567 GRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L T + + KRN+ C C E+E HA+ C +W
Sbjct: 1703 NSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSLW 1746
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 257 bits (657), Expect = 2e-66
Identities = 158/522 (30%), Positives = 252/522 (48%), Gaps = 26/522 (4%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF +++ I C++S M+ + G +SF P+RG+RQGDP+ P+LF+ + L+L +K
Sbjct: 1331 GFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLK 1390
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
+ + FKV R+ P ISHLLFADD +LF +A +A ++ E+L ++ +GQ ++P
Sbjct: 1391 EKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINP 1450
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
K + ++ I L +++ YLG P + K F L K+ K++
Sbjct: 1451 AKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRV 1510
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
W + LS G+ L ++ + ++P YVM +P V ++ +L +NF W S RK
Sbjct: 1511 IQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKT 1570
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H +WD++ PK GGLGF D R NQA +A+ AW ++ DSL +VLKAKY F G
Sbjct: 1571 HWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKY-FPHGSL 1629
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIP---NMGPITSFMPD 1461
SP W+ I +++KG+ W +GNG + WRD+W+P + PIT
Sbjct: 1630 IDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITG---- 1685
Query: 1462 VHSEAWNANLPVAAFL--ENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPF-WGL 1518
N L + L E+G W+ + Q + I LN R E++ W
Sbjct: 1686 ----KANCRLKWVSDLITEDGSWDVPKIHQYFHNLDAEVI--LNICISSRSEEDFIAWHP 1739
Query: 1519 SPDGAFSLNSVFLILLPPPPV---------SYEKTFEHVWNFRGPPRAQAVLWKTAHGRL 1569
+G FS+ S + + + + K +E +W + P + + W+ A L
Sbjct: 1740 DKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCL 1799
Query: 1570 LTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVWN 1611
T + KR + C C E E HA+ C +W+
Sbjct: 1800 ATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWS 1841
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 255 bits (652), Expect = 8e-66
Identities = 158/526 (30%), Positives = 251/526 (47%), Gaps = 24/526 (4%)
Query: 1099 ATLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIER 1158
A L+ GF +K+I I WCI++ + G P RG+RQGDP+SPYLF+LC E
Sbjct: 375 ALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEV 434
Query: 1159 LALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEAS 1218
L I+ A KV P++SHLLFADD + F +A+ +Q +I EIL + S
Sbjct: 435 LIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVS 494
Query: 1219 GQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLID 1278
GQ+++ KS + F V D I LGI +G YLG+P + F+F+ D
Sbjct: 495 GQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRD 554
Query: 1279 KVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGST 1338
+++ +++GW LS G+ + +S +LP YVM +P + ++ F W S
Sbjct: 555 RLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSN 614
Query: 1339 ADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKY- 1397
D R H ++WD +CS K GGLGF ++ N A +AK W ++ DSL+ +V K +Y
Sbjct: 615 GDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYF 674
Query: 1398 -KFNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPIT 1456
K NP + S W+ + A ++ KG+ +G+G +S W D WIP P
Sbjct: 675 RKSNP---LDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRP 731
Query: 1457 SFMPDVHSEAWNANLPVAAFLENGD--WNWNSLSQLLPDDVCRRIRALNPPHLERGEDEP 1514
+ + +L V + +++ WN + L +L + I AL P ED
Sbjct: 732 A---KYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISAL-PIGNPNMEDTL 787
Query: 1515 FWGLSPDGAFSLNSVF----------LILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKT 1564
W + G +++ S + L+ P + + ++W + PP+ + LW+
Sbjct: 788 GWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLK---AYIWKVQCPPKLRHFLWQI 844
Query: 1565 AHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
G + ++ KR + D C C EES+ H + C + +W
Sbjct: 845 LSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW 890
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 252 bits (644), Expect = 6e-65
Identities = 157/522 (30%), Positives = 250/522 (47%), Gaps = 26/522 (4%)
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF +++ I C++S M+ + G +SF P+RG+RQGDP+SP+LF+ + L+L +K
Sbjct: 7 GFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLSPFLFLFVADGLSLLLK 66
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
+ + FKV R+ P ISHLLFADD +LF +A +A ++ E+L ++ +GQ ++P
Sbjct: 67 EKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINP 126
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKL 1284
K + ++ I L +++ YL P + K F L K+ K++
Sbjct: 127 AKCSILMGGASTPAVSEAISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIWKRV 186
Query: 1285 SGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKC 1344
W + LS G+ L ++ + ++P YVM +P V ++ +L +NF W S RK
Sbjct: 187 IQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKT 246
Query: 1345 HLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLR 1404
H +WD++ PK GGLGF D NQA +A+ AW ++ DSL +VLKAKY F G
Sbjct: 247 HWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKY-FPHGSL 305
Query: 1405 APPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIP---NMGPITSFMPD 1461
SP W+ I +++KG+ W +GNG + WRD W+P + PIT
Sbjct: 306 IDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITG---- 361
Query: 1462 VHSEAWNANLPVAAFL--ENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPF-WGL 1518
N L + L E+G W+ + Q + I LN R E++ W
Sbjct: 362 ----KANCRLKWVSDLITEDGSWDVPKIHQYFHNLDAEVI--LNICISSRSEEDFIAWHP 415
Query: 1519 SPDGAFSLNSVFLILLPPPPV---------SYEKTFEHVWNFRGPPRAQAVLWKTAHGRL 1569
+G FS+ S + + + + K +E +W + P + + W+ A L
Sbjct: 416 DKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCL 475
Query: 1570 LTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVWN 1611
T + KR + C C E E HA+ C +W+
Sbjct: 476 ATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWS 517
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 246 bits (628), Expect = 5e-63
Identities = 154/525 (29%), Positives = 251/525 (47%), Gaps = 22/525 (4%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
T++ FGF +K+I I + S + G+ P+RG+RQGDP+SPYLF+LC + L
Sbjct: 974 TMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDIL 1033
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
+ I S G + ++G P+I+HL FADD + F +A+V + ++ + SG
Sbjct: 1034 SHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 1093
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QK++ KS + F V+ ++ L I G YLG+P KE F ++ID+
Sbjct: 1094 QKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDR 1153
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V+K+ S W LS AG+ + +S L++P Y M +P G+ EIE L NF W +
Sbjct: 1154 VKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKAS 1213
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ R ++W + K +GGLGF DL N A +AK AW ++ +SL+ +V+KA+Y
Sbjct: 1214 NQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFK 1273
Query: 1400 NPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFM 1459
+ + + K S W + +++KG + +G+G + DN + + P
Sbjct: 1274 DVSILDAKVRKQ-QSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNT 1332
Query: 1460 PDVHSEAWNANLPVAAFLENGD---WNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFW 1516
+ + E NL F G W+ + +SQ + I + ++ D+ W
Sbjct: 1333 EETYKEMTINNL----FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK-PDKIIW 1387
Query: 1517 GLSPDGAFSLNSVFLIL----------LPPPPVSYE-KTFEHVWNFRGPPRAQAVLWKTA 1565
+ G +++ S + +L + PP S + KT +WN P+ + LW+
Sbjct: 1388 NYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKT--RIWNLPIMPKLKHFLWRAL 1445
Query: 1566 HGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L T + R M D +CPRC E ES+ HA+ C W
Sbjct: 1446 SQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 1490
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 245 bits (626), Expect = 8e-63
Identities = 154/525 (29%), Positives = 250/525 (47%), Gaps = 22/525 (4%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
T++ FGF +K+I I + S + G+ P+RG+RQGDP+SPYLF+LC + L
Sbjct: 748 TMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDIL 807
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
+ I S G + ++G P+I+HL FADD + F +A+V + ++ + SG
Sbjct: 808 SHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 867
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QK++ KS + F V+ ++ L I G YLG+P KE F ++ID+
Sbjct: 868 QKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDR 927
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V+K+ S W LS AG+ + +S L++P Y M +P G+ EIE L NF W +
Sbjct: 928 VKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKAS 987
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ R ++W + K +GGLGF DL N A +AK AW ++ +SL+ +V+KA+Y
Sbjct: 988 NQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFK 1047
Query: 1400 NPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFM 1459
+ + + K S W + +++KG + +G+G + DN + + P
Sbjct: 1048 DVSILDAKVRKQ-QSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNT 1106
Query: 1460 PDVHSEAWNANLPVAAFLENGD---WNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFW 1516
+ + E NL F G W+ + +SQ + I + ++ D+ W
Sbjct: 1107 EETYKEMTINNL----FERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK-PDKIIW 1161
Query: 1517 GLSPDGAFSLNSVFLIL----------LPPPPVSYE-KTFEHVWNFRGPPRAQAVLWKTA 1565
+ G +++ S + +L + PP S + KT +WN P+ + LW+
Sbjct: 1162 NYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKT--RIWNLPIMPKLKHFLWRAL 1219
Query: 1566 HGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L T + R M D CPRC E ES+ HA+ C W
Sbjct: 1220 SQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAW 1264
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 244 bits (622), Expect = 2e-62
Identities = 155/534 (29%), Positives = 242/534 (45%), Gaps = 40/534 (7%)
Query: 1100 TLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERL 1159
T++ FGF DK+I I + S + G+ +P+RG+RQGDP+SPYLF+LC + L
Sbjct: 213 TMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDIL 272
Query: 1160 ALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASG 1219
+ IK S G + ++G P+I+HL FADD + F +A+V + ++ + SG
Sbjct: 273 SHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSG 332
Query: 1220 QKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDK 1279
QK++ KS + F V+ ++ L I G YLG+P KE FN++ID+
Sbjct: 333 QKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDR 392
Query: 1280 VRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTA 1339
V+++ + W LS AG+ L +S L++P Y M +P G+ EIE L NF W +
Sbjct: 393 VKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKAS 452
Query: 1340 DHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKF 1399
+ R ++W + K +GGLGF DL N A +AK AW I+ +SL+ +V+KA+Y F
Sbjct: 453 NKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARY-F 511
Query: 1400 NPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGP---IT 1456
+ S W + ++ KG ++ +G+G + DN + + P +T
Sbjct: 512 KDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVVDSHPPRPLLT 571
Query: 1457 S-----------FMPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPP 1505
F HS W+ N + F++ D D +RI
Sbjct: 572 DEQHNGLSLDNLFQHRGHSRCWD-NAKLQTFVDQSD-----------HDYIKRIYL---- 615
Query: 1506 HLERGEDEPFWGLSPDGAFSLNSVFLILLPPP---------PVSYEKTFEHVWNFRGPPR 1556
D W + G +++ S + + P P +WN P+
Sbjct: 616 STRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPK 675
Query: 1557 AQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
+ LW+ L T R M D CPRC E ES+ HA+ C W
Sbjct: 676 LKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAW 729
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.341 0.150 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,745,584,577
Number of Sequences: 2540612
Number of extensions: 116997480
Number of successful extensions: 322979
Number of sequences better than 10.0: 810
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 320923
Number of HSP's gapped (non-prelim): 1235
length of query: 1611
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1469
effective length of database: 502,593,490
effective search space: 738309836810
effective search space used: 738309836810
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0027.9