BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.5
(1710 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 1229 0.0
gb|AAX95607.1| RNase H, putative [Oryza sativa (japonica cultiva... 1171 0.0
gb|AAK53848.1| Putative retroelement [Oryza sativa] 1168 0.0
ref|XP_462939.1| putative gag-pol protein [Oryza sativa (japonic... 1153 0.0
gb|AAT93841.1| putative polyprotein [Oryza sativa (japonica cult... 1064 0.0
ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultiv... 956 0.0
ref|XP_474893.1| OSJNBa0021F22.20 [Oryza sativa (japonica cultiv... 907 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 848 0.0
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 773 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 748 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 713 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 704 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 702 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 701 0.0
gb|AAP53658.1| putative retroelement [Oryza sativa (japonica cul... 700 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 699 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 699 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 699 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 696 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 694 0.0
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 1229 bits (3179), Expect = 0.0
Identities = 617/1271 (48%), Positives = 846/1271 (66%), Gaps = 40/1271 (3%)
Query: 434 ERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLI 493
E+ +F++P HLKPL++ V+ K ++K++VDGGA +NLMP +KLG+ DLI
Sbjct: 346 EQVVFEKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLI 405
Query: 494 PHDMVLSDYEGKTGSSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVP 553
+MVL D+ G ++G + + +TVG+ T F V+ K +Y+LLLGR+WIH +P
Sbjct: 406 KTNMVLKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIP 465
Query: 554 STLHQRISIWKLDGVVENVQADQSYYLAETGYVGKKNFEKSLATIAPLDTVANQYFNPYS 613
ST+HQ + W+ D + E V AD + Y + E S + DTV +
Sbjct: 466 STIHQCLIQWQGDKI-EIVPADSQLKMENPSYCFEGVMEGS--NVYTKDTVDD------- 515
Query: 614 EYSVMLDPIRGLNLNEAYKPDAMSGWHNDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEM 673
LD +G L A + + + A + ++ +++LLKEF+DCF W+Y EM
Sbjct: 516 -----LDDKQGQGLMSADDLEEI------DISPAIGQGRHLLIELLKEFRDCFTWEYYEM 564
Query: 674 PGLSRDLVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLAN 733
PG SR +VE +LP+K +P +QLPRR D+L +K EI+RL FIR RY +W+++
Sbjct: 565 PGHSRSIVEHRLPLKPGVRPHQQLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSS 624
Query: 734 VVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIF 793
+VPVIKKNGK+RVCIDFR LN ATPKDEY M VA+ +VD+ +GH+ LS +DG +GYNQIF
Sbjct: 625 IVPVIKKNGKVRVCIDFRYLNKATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIF 684
Query: 794 IAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIV 853
+AEED+ KT FRCPGA+G +EWVV+ F LK+AGATYQR MN I+HD I ++VYIDD+V
Sbjct: 685 MAEEDIHKTTFRCPGAIGLFEWVVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVV 744
Query: 854 VKSPSRDDHLAHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 913
VKS +DH+A LRK FER RKYGLKMNP KCAFGV AG FLGF+VH++GIE+ + A
Sbjct: 745 VKSKEIEDHIADLRKVFERTRKYGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINA 804
Query: 914 ILDTSPPTSKKQLQSLLGKINFLRRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFD 973
I PP K +LQ ++GKINF+RRFI+ LS K + F+PLLRLK + F W AE QKA D
Sbjct: 805 IKKIKPPEDKTELQEMIGKINFVRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALD 864
Query: 974 ELKVYLSSPHVMAPPIRGKPMKLYISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAET 1033
+K YLSSP V+ PP +G P +LY+SA D +I S+L QE E KER +FYLSR L +AET
Sbjct: 865 NIKEYLSSPPVLIPPQKGIPFRLYLSAGDKSISSVLIQELE-RKERVVFYLSRRLLNAET 923
Query: 1034 RYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEY 1093
RY+ +EKLCLCLYFSC +L++Y+ + V D++K+MLS PIL RIGKW +LTE+
Sbjct: 924 RYSPVEKLCLCLYFSCTRLRHYLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEF 983
Query: 1094 SLTYAPLKAVKGQAIADFLVDHTLPKEIVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPG 1153
L Y KA+KGQAIA+F+VD+ + + V + PW LFFDGS +G GIG+ I+SP
Sbjct: 984 DLRYESPKAIKGQAIANFIVDYR--DDSIGSVEVVPWTLFFDGSVCTHGCGIGLVIISPR 1041
Query: 1154 GIPTKFKFRIKKNCSNNEAEYEALISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKCVS 1213
G +F + IK +NN+AEYEA++ GL++L A + I GDS LVI QL EY+C +
Sbjct: 1042 GACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEYECKN 1101
Query: 1214 ENLARYYTKANNLLAKFDEARLSHVSRVDNQEANELAQIASGYMVDKCRLKELIEVKEKL 1273
+ L Y K L+ +F L HVSR N EAN+LAQ ASGY K +K +
Sbjct: 1102 DTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGY---KLMIKHV------- 1151
Query: 1274 NLSDLNILVIDNMAPNDWRKPIVDYLQNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTL 1333
+ + VI +DWR + YLQ+P + RK +Y+A+ Y+++ +EL+ + +DG L
Sbjct: 1152 ---QIEVAVI---TADDWRYYVYQYLQDPSQSASRKLRYKALKYILLDDELYYRTIDGVL 1205
Query: 1334 LKCLSEDDAFIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQR 1393
LKCLS D A +AI VH+G+CG HQ+ KMKW+L G +WPT+++DC Y KGCQD Q+
Sbjct: 1206 LKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPTMLEDCFRYYKGCQDCQK 1265
Query: 1394 HAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQ 1453
IQ PAS ++ IIKPWPFRGW +D+IG INP SS+ HK+I+VA DYFTKWVEAIPL+
Sbjct: 1266 FGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLK 1325
Query: 1454 NVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQAN 1513
V I F+Q HI+YR G+P+++TTDQG++FV + FA+S GIKLLNS+PYYAQAN
Sbjct: 1326 KVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFADSMGIKLLNSSPYYAQAN 1385
Query: 1514 GQVEAANKTLISLIKKHVGRKPKRWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLP 1573
GQ EA+NK+LI LIK+ + P++WH L + LW+YR + + P++L Y +A+LP
Sbjct: 1386 GQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGSIQVPPYKLVYRHKAILP 1445
Query: 1574 AEVYLQSCRIQRQEEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRA 1633
EV + S R + Q ++ +++Y N+M DE +L + RL AL + + K+RV + YNKKV
Sbjct: 1446 WEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRALAKVIKDKERVTRHYNKKVVP 1505
Query: 1634 KSFMPGDYVWKVVLPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVN 1693
K F G+ +WK++LP+ RD ++GKW+PNWEGPF + K++ AY ++ L G +N
Sbjct: 1506 KDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKGAYMLQGLDGEVYDRALN 1565
Query: 1694 GKYLKTYKPTV 1704
GKYLK Y P+V
Sbjct: 1566 GKYLKKYYPSV 1576
Score = 79.3 bits (194), Expect = 1e-12
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 43/204 (21%)
Query: 45 VSLKDLASVKRKPAESIDDYLNRFRMLKSRCFT-HVPEHELVVLAAGGLEYSIRKKIDTQ 103
+ L DL +K+K E + +Y+ RFR ++++CF+ + + +L LA G+ IR+K ++
Sbjct: 1 MKLSDLTVIKQKHDEPVHEYIQRFREMRNKCFSLSLTDAQLADLAFQGMIAPIREKFSSE 60
Query: 104 YIRDMSLLADRP--RENKLGE--------------------ENPKSTIPAVK-------- 133
+S L + E + E E+ S I A +
Sbjct: 61 DFESLSHLTQKVTLHEQRFAEARRNSRKVNNVCSYMCGSDDEDDDSEIAAAEWVRSTKVI 120
Query: 134 ------------TYTFDVTKCDAIYDILVSDGLLVVPKDQKLPSPEQRKGKKYCKYHNFF 181
Y F++T + I+D+L+ + + +P +PS E+ K+YCK+HN
Sbjct: 121 PCQWVKNSGKEERYDFEITNANKIFDLLLREKQIQMPASHTIPSAEELGKKRYCKWHNSG 180
Query: 182 GHWTSQCVRFRDLVQGALDSGRLK 205
H T+ C F+ +Q A++ G++K
Sbjct: 181 SHTTNDCKVFKQQIQTAIEGGKIK 204
>gb|AAX95607.1| RNase H, putative [Oryza sativa (japonica cultivar-group)]
Length = 2282
Score = 1171 bits (3030), Expect = 0.0
Identities = 675/1669 (40%), Positives = 959/1669 (57%), Gaps = 187/1669 (11%)
Query: 1 MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAES 60
++ F SL + FTWF++L S+++WA LE+ FH F+ G ++ L DL S+K+K E
Sbjct: 698 VRLFRLSLAGSTFTWFSSLPYGSINSWADLEKQFHSYFYSGIHEMKLSDLTSIKQKHDEP 757
Query: 61 IDDYLNRFRMLKSRCFT-HVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLLADR----- 114
+ +Y+ RFR ++++C++ + + +L LA G+ IR+K+ ++ +S L +
Sbjct: 758 VHEYIQRFREMRNKCYSLSLTDAQLADLAFQGMIAPIREKLSSEDFESLSHLTQKVALHE 817
Query: 115 -----------------PRENKLGEENPKSTIPAVK--------------------TYTF 137
P + +E+ S I A + Y F
Sbjct: 818 QRYAEARKNSRKVNHVCPYKYGSDDEDDDSEIAAAEWVRSKKVIPCQWVKNSGKEERYDF 877
Query: 138 DVTKCDAIYDILVSDGLLVVPKDQKLPSPEQRKGKKYCKYHNFFGHWTSQCVRFRDLVQG 197
D++K D I+D+L+ + + +P +PS E+ K+YCK+HN H T+ C FR +Q
Sbjct: 878 DISKADKIFDLLLREKQIQLPAGHTIPSAEELGKKRYCKWHNSGSHTTNDCKVFRQQIQA 937
Query: 198 ALDSGRLKRLKYPHEEWVERDQELDG--------HKGQKL--RSKDKTYVPDAGLPKNQW 247
A++ G++K + +R ++DG H + R + + + ++ N++
Sbjct: 938 AIEGGKIKF------DDSKRLMKVDGNPFPVNMVHTAGRTADRGRARGFQVNSAKIINKY 991
Query: 248 FKPAPPRPKPYPMWQKIDLGQRSSYINN----SRVSRNCS--YGSGNYY----------- 290
+ + + + ++ D G R I + S +++N S YG GN
Sbjct: 992 QRKYDKQQEKHH--EEDDDGLRLPSIEDCPGCSDIAKNSSRSYGRGNRLRQTRVPVHQRL 1049
Query: 291 APEQMTRTQFRRFLRKR---------KTERERGGKFRSLWDIKPEDNLRNEPSVASIINQ 341
P Q +RK K ++ R K R W +K + + +E
Sbjct: 1050 GPVNQDHGQEDNEIRKNQWCPSGIFTKNQKRRKTKSRQEWRVKNQVPVADE--------- 1100
Query: 342 LDHAIKQGATVPPNPAKEKGKDVVEDEDEDMLEDFDDSEGKDLNIICIVSILPAEFD-RI 400
AT KGK VV + +V LPAE +
Sbjct: 1101 --------ATAEEAKRLAKGKSVVTAS------------------VNMVFTLPAEIGTKQ 1134
Query: 401 SEVTENEEDYYDEEEPDDNPLCYYVMQKGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDE 460
++V E EE+ K + E+AIF++P HLKPL++ V+
Sbjct: 1135 ADVDEVEEE----------------SAKLILLPEQAIFEKPEGTENRHLKPLYINGYVNG 1178
Query: 461 KGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTGSSLGAIMLNITVG 520
K ++K++VDGGA +NLMP +KLG+ DLI +MVL D+ G + G + +TVG
Sbjct: 1179 KPMSKMMVDGGAEVNLMPYATFRKLGRNVEDLIKTNMVLIDFGGNLSETKGVSNVELTVG 1238
Query: 521 TVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKLDGVVENVQADQSYYL 580
T F V+ +Y+LLLGR+WIH +PST+HQ + W+ D +E V AD +
Sbjct: 1239 NKTIPTTFFVIDGNGSYSLLLGRDWIHANCCIPSTMHQCLIQWQ-DDKIEIVPADSQLKM 1297
Query: 581 AETGYVGKKNFEKSLA----TIAPLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAM 636
+ E S T+ LD Q F + D + +++ +P
Sbjct: 1298 ENPSCYFEGVVEGSNVYIKDTVDDLDDKQGQGF-------ISADDLEEIDIGPGDRPRPT 1350
Query: 637 SGWHNDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQ 696
K+ +TE++ ++++LLKEF+DCFAW+Y EMPGLSR +VE +LPIK +P +Q
Sbjct: 1351 FIC-----KNLSTEFRAKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPGVRPHQQ 1405
Query: 697 LPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAA 756
RR D+L +K EI+RL FIR RY +W++++VPVIKKN DLN A
Sbjct: 1406 PLRRCKADMLEPVKVEIKRLYDACFIRPCRYAEWVSSIVPVIKKN----------DLNKA 1455
Query: 757 TPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWV 816
TPKDEY MPVA+ +VD+ +G++ LS +DG GYNQIF+AEED+ KTAFRCPGA+G +EWV
Sbjct: 1456 TPKDEYPMPVADQLVDAASGNKILSYMDGNVGYNQIFMAEEDIHKTAFRCPGAIGLFEWV 1515
Query: 817 VMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKY 876
VM FGLK+AGATYQR MN I+HD I ++VYIDD+VVKS +DH+A LRK FER RKY
Sbjct: 1516 VMTFGLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKY 1575
Query: 877 GLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFL 936
GLKMNP KCAFGV G FLGF+VH++GIE+ + AI PP +K +LQ + GKINF+
Sbjct: 1576 GLKMNPTKCAFGVSVGQFLGFLVHERGIEVTQRSVNAIKKIQPPENKTELQEMNGKINFV 1635
Query: 937 RRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKL 996
RRFI+ LS + + F+PLLRLK + F W AE QKA D++K YLSSP V+ PP +G +L
Sbjct: 1636 RRFISYLSGRLEPFTPLLRLKADQQFTWGAEQQKALDDIKEYLSSPPVLIPPQKGISFRL 1695
Query: 997 YISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYI 1056
Y+SA + +IGS+L QE D KER +FYLSR L D ETRY+ +EKLCLCLYFSC +L +Y+
Sbjct: 1696 YLSAGEKSIGSVLIQE-LDGKERVVFYLSRRLLDVETRYSPMEKLCLCLYFSCTRLSHYL 1754
Query: 1057 KPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHT 1116
+ V D+IK+MLS PIL R+GKW +LTE+ L Y KA+KGQAIADF+V+H
Sbjct: 1755 LSNECTVICKADVIKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAIKGQAIADFIVEHC 1814
Query: 1117 LPKEIVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEA 1176
+ + V + PW FFDGS + GIG+ I+SP G KF + IK +NN+AEYEA
Sbjct: 1815 --DDSIGSVEVVPWTSFFDGSVCTHDCGIGLVIISPRGACFKFAYTIKPYATNNQAEYEA 1872
Query: 1177 LISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLS 1236
++ GL++L A + I GDS LVI QL EY+C S+ L Y K L+ +F L
Sbjct: 1873 VLKGLQLLKEVEADAIEIMGDSLLVISQLAGEYECKSDTLMVYNEKCQELMQEFRLVTLK 1932
Query: 1237 HVSRVDNQEANELAQIASGYMVDKCRLKELI-EVKEKLNLSDLNILVIDNMAPNDWRKPI 1295
HVSR N EAN+LAQ ASGY K +I +VK + I + DWR +
Sbjct: 1933 HVSREQNIEANDLAQGASGY-------KPMIKDVKAE----------IAAITAGDWRYDV 1975
Query: 1296 VDYLQNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVHDGLCG 1355
YL NP + RK +Y+A+ Y ++ +EL+ + +DG LLKCLS D A +AI VH+G+CG
Sbjct: 1976 HQYLHNPSQSASRKLRYKALKYTLLDDELYYRTIDGVLLKCLSADQAKVAIGEVHEGICG 2035
Query: 1356 AHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIKPWPFR 1415
HQ+ KMKW+L R +WPT+++DC +Y KGCQD Q+ IQ PAS ++ IIKPWPFR
Sbjct: 2036 THQSAHKMKWLLRRARYFWPTMLEDCFKYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFR 2095
Query: 1416 GWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLP 1475
GW +D+IG I+ SS+ HK+I+VA DYFTK VEAIPL+ V I F+Q HI+YRFG+P
Sbjct: 2096 GWGIDMIGMISRPSSKGHKFILVATDYFTKLVEAIPLKKVDSGDAIQFVQEHIIYRFGIP 2155
Query: 1476 ESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKHVGRKP 1535
+++TTDQG++FV + F +S GIKLLNS+PYYAQANGQ EA+NK+LI LIK+ P
Sbjct: 2156 QTITTDQGSIFVSDEFVQFVDSMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKNSDYP 2215
Query: 1536 KRWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQ 1584
++WH L + LW+YR + + P++L YG EA+LP EV + S R +
Sbjct: 2216 RQWHTRLDEALWSYRMACHGSIQVPPYKLVYGHEAILPWEVRIGSRRTE 2264
>gb|AAK53848.1| Putative retroelement [Oryza sativa]
Length = 2014
Score = 1168 bits (3021), Expect = 0.0
Identities = 677/1665 (40%), Positives = 955/1665 (56%), Gaps = 194/1665 (11%)
Query: 1 MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAES 60
++ F SL + FTWF++L S+++WA LE+ FH F+ G ++ L DL S+K+K E
Sbjct: 445 VRLFRLSLAGSTFTWFSSLPYGSINSWADLEKQFHSYFYSGIHEMKLSDLTSIKQKHDEP 504
Query: 61 IDDYLNRFRMLKSRCFT-HVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLLADR----- 114
+ +Y+ RFR ++++C++ + + +L LA G+ IR+K+ ++ +S L +
Sbjct: 505 VHEYIQRFREMRNKCYSLSLTDAQLADLAFQGMIAPIREKLSSEDFESLSHLTQKVALHE 564
Query: 115 -----------------PRENKLGEENPKSTIPAVK--------------------TYTF 137
P + +E+ S I A + Y F
Sbjct: 565 QRYAEARKNSRKVNHVCPYKYGSDDEDDDSEIAAAEWVRSKKVIPCQWVKNSGKEERYDF 624
Query: 138 DVTKCDAIYDILVSDGLLVVPKDQKLPSPEQRKGKKYCKYHNFFGHWTSQCVRFRDLVQG 197
D++K D I+D+L+ + + +P +PS E+ K+YCK+HN H T+ C FR +Q
Sbjct: 625 DISKADKIFDLLLREKQIQLPAGHTIPSAEELGKKRYCKWHNSGSHTTNDCKVFRQQIQA 684
Query: 198 ALDSGRLKRLKYPHEEWVERDQELDG--------HKGQKL--RSKDKTYVPDAGLPKNQW 247
A++ G++K + +R ++DG H + R + + + ++ N++
Sbjct: 685 AIEGGKIKF------DDSKRLMKVDGNPFPVNMVHTAGRTADRGRARGFQVNSAKIINKY 738
Query: 248 FKPAPPRPKPYPMWQKIDLGQRSSYINN----SRVSRNCS--YGSGNYY----------- 290
+ + + + ++ D G R I + S +++N S YG GN
Sbjct: 739 QRKYDKQQEKHH--EEDDDGLRLPSIEDCPGCSDIAKNSSRSYGRGNRLRQTRVPVHQRL 796
Query: 291 APEQMTRTQFRRFLRKR---------KTERERGGKFRSLWDIKPEDNLRNEPSVASIINQ 341
P Q +RK K ++ R K R W +K + + +E
Sbjct: 797 GPVNQDHGQEDNEIRKNQWCPSGIFTKNQKRRKTKSRQEWRVKNQVPVADE--------- 847
Query: 342 LDHAIKQGATVPPNPAKEKGKDVVEDEDEDMLEDFDDSEGKDLNIICIVSILPAEFD-RI 400
AT KGK VV + +V LPAE +
Sbjct: 848 --------ATAEEAKRLAKGKSVVTAS------------------VNMVFTLPAEIGTKQ 881
Query: 401 SEVTENEEDYYDEEEPDDNPLCYYVMQKGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDE 460
++V E EE+ K + E+AIF++P HLKPL++ V+
Sbjct: 882 ADVDEVEEE----------------SAKLILLPEQAIFEKPEGTENRHLKPLYINGYVNG 925
Query: 461 KGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTGSSLGAIMLNITVG 520
K ++K++VDGGA +NLMP +KLG+ DLI +MVL D+ G + G + +TVG
Sbjct: 926 KPMSKMMVDGGAEVNLMPYATFRKLGRNVEDLIKTNMVLIDFGGNLSETKGVSNVELTVG 985
Query: 521 TVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKLDGVVENVQADQSYYL 580
T F V+ +Y+LLLGR+WIH +PST+HQ + W+ D +E V AD +
Sbjct: 986 NKTIPTTFFVIDGNGSYSLLLGRDWIHANCCIPSTMHQCLIQWQ-DDKIEIVPADSQLKM 1044
Query: 581 AETGYVGKKNFEKSLATIAPLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAMSGWH 640
+ E S I DTV + LD +G A
Sbjct: 1045 ENPSCYFEGVVEGSNVYIK--DTVDD------------LDDKQGQGFISA---------D 1081
Query: 641 NDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRR 700
+ EE D E++ ++++LLKEF+DCFAW+Y EMPGLSR +VE +LPIK +P +Q RR
Sbjct: 1082 DLEEIDIGPEFRAKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPGVRPHQQPLRR 1141
Query: 701 FHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKD 760
D+L +K EI+RL FIR RY +W++++VPVIKKN DLN ATPKD
Sbjct: 1142 CKADMLEPVKVEIKRLYDACFIRPCRYAEWVSSIVPVIKKN----------DLNKATPKD 1191
Query: 761 EYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPF 820
EY MPVA+ +VD+ +G++ LS +DG GYNQIF+AEED+ KTAFRCPGA+G +EWVVM F
Sbjct: 1192 EYPMPVADQLVDAASGNKILSYMDGNVGYNQIFMAEEDIHKTAFRCPGAIGLFEWVVMTF 1251
Query: 821 GLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKM 880
GLK+AGATYQR MN I+HD I ++VYIDD+VVKS +DH+A LRK FER RKYGLKM
Sbjct: 1252 GLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKYGLKM 1311
Query: 881 NPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFI 940
NP KCAFGV G FLGF+VH++GIE+ + AI PP +K +LQ + GKINF+RRFI
Sbjct: 1312 NPTKCAFGVSVGQFLGFLVHERGIEVTQRSVNAIKKIQPPENKTELQEMNGKINFVRRFI 1371
Query: 941 ANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISA 1000
+ LS + + F+PLLRLK + F W AE QKA D++K YLSSP V+ PP +G +LY+SA
Sbjct: 1372 SYLSGRLEPFTPLLRLKADQQFTWGAEQQKALDDIKEYLSSPPVLIPPQKGISFRLYLSA 1431
Query: 1001 TDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPID 1060
+ +IGS+L QE D KER +FYLSR L D ETRY+ +EKLCLCLYFSC +L +Y+ +
Sbjct: 1432 GEKSIGSVLIQE-LDGKERVVFYLSRRLLDVETRYSPMEKLCLCLYFSCTRLSHYLLSNE 1490
Query: 1061 VMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKE 1120
V D+IK+MLS PIL R+GKW +LTE+ L Y KA+KGQAIADF+V+H +
Sbjct: 1491 CTVICKADVIKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAIKGQAIADFIVEHC--DD 1548
Query: 1121 IVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISG 1180
+ V + PW FFDGS + GIG+ I+SP G KF + IK +NN+AEYEA++ G
Sbjct: 1549 SIGSVEVVPWTSFFDGSVCTHDCGIGLVIISPRGACFKFAYTIKPYATNNQAEYEAVLKG 1608
Query: 1181 LEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSR 1240
L++L A + I GDS LVI QL EY+C S+ L Y K L+ +F L HVSR
Sbjct: 1609 LQLLKEVEADAIEIMGDSLLVISQLAGEYECKSDTLMVYNEKCQELMQEFRLVTLKHVSR 1668
Query: 1241 VDNQEANELAQIASGYMVDKCRLKELI-EVKEKLNLSDLNILVIDNMAPNDWRKPIVDYL 1299
N EAN+LAQ ASGY K +I +VK + I + DWR + YL
Sbjct: 1669 EQNIEANDLAQGASGY-------KPMIKDVKAE----------IAAITAGDWRYDVHQYL 1711
Query: 1300 QNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVHDGLCGAHQA 1359
NP + RK +Y+A+ Y ++ +EL+ + +DG LLKCLS D A +AI VH+G+CG HQ+
Sbjct: 1712 HNPSQSASRKLRYKALKYTLLDDELYYRTIDGVLLKCLSADQAKVAIGEVHEGICGTHQS 1771
Query: 1360 GIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIKPWPFRGWAL 1419
KMKW+L R +WPT+++DC +Y KGCQD Q+ IQ PAS ++ IIKPWPFRGW +
Sbjct: 1772 AHKMKWLLRRARYFWPTMLEDCFKYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGI 1831
Query: 1420 DLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLT 1479
D+IG I+ SS+ HK+I+VA DYFTK VEAIPL+ V I F+Q HI+YRFG+P+++T
Sbjct: 1832 DMIGMISRPSSKGHKFILVATDYFTKLVEAIPLKKVDSGDAIQFVQEHIIYRFGIPQTIT 1891
Query: 1480 TDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKHVGRKPKRWH 1539
TDQG++FV + F +S GIKLLNS+PYYAQANGQ EA+NK+LI LIK+ P++WH
Sbjct: 1892 TDQGSIFVSDEFVQFVDSMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKNSDYPRQWH 1951
Query: 1540 QTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQ 1584
L + LW+YR + + P++L YG EA+LP EV + S R +
Sbjct: 1952 TRLDEALWSYRMACHGSIQVPPYKLVYGHEAILPWEVRIGSRRTE 1996
>ref|XP_462939.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 2273
Score = 1153 bits (2982), Expect = 0.0
Identities = 668/1669 (40%), Positives = 950/1669 (56%), Gaps = 196/1669 (11%)
Query: 1 MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAES 60
++ F SL + FTWF++L S+++WA LE+ FH F+ G ++ L DL S+K+K E
Sbjct: 698 VRLFRLSLAGSTFTWFSSLPYGSINSWADLEKQFHSYFYSGIHEMKLSDLTSIKQKHDEP 757
Query: 61 IDDYLNRFRMLKSRCFT-HVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLLADR----- 114
+ +Y+ RFR ++++C++ + + +L LA G+ IR+K+ ++ +S L +
Sbjct: 758 VHEYIQRFREMRNKCYSLSLTDAQLADLAFQGMIAPIREKLSSEDFESLSHLTQKVALHE 817
Query: 115 -----------------PRENKLGEENPKSTIPAVK--------------------TYTF 137
P + +E+ S I A + Y F
Sbjct: 818 QRYAEARKNSRKVNHVCPYKYGSDDEDDDSEIAAAEWVRSKKVIPCQWVKNSGKEERYDF 877
Query: 138 DVTKCDAIYDILVSDGLLVVPKDQKLPSPEQRKGKKYCKYHNFFGHWTSQCVRFRDLVQG 197
D++K D I+D+L+ + + +P +PS E+ K+YCK+HN H T+ C FR +Q
Sbjct: 878 DISKADKIFDLLLREKQIQLPAGHTIPSAEELGKKRYCKWHNSGSHTTNDCKVFRQQIQA 937
Query: 198 ALDSGRLKRLKYPHEEWVERDQELDG--------HKGQKL--RSKDKTYVPDAGLPKNQW 247
A++ G++K + +R ++DG H + R + + + ++ N++
Sbjct: 938 AIEGGKIKF------DDSKRLMKVDGNPFPVNMVHTAGRTADRGRARGFQVNSAKIINKY 991
Query: 248 FKPAPPRPKPYPMWQKIDLGQRSSYINN----SRVSRNCS--YGSGNYY----------- 290
+ + + + ++ D G R I + S +++N S YG GN
Sbjct: 992 QRKYDKQQEKHH--EEDDDGLRLPSIEDCPGCSDIAKNSSRSYGRGNRLRQTRVPVHQRL 1049
Query: 291 APEQMTRTQFRRFLRKR---------KTERERGGKFRSLWDIKPEDNLRNEPSVASIINQ 341
P Q +RK K ++ R K R W +K + + +E
Sbjct: 1050 GPVNQDHGQEDNEIRKNQWCPSGIFTKNQKRRKTKSRQEWRVKNQVPVADE--------- 1100
Query: 342 LDHAIKQGATVPPNPAKEKGKDVVEDEDEDMLEDFDDSEGKDLNIICIVSILPAEFD-RI 400
AT KGK VV + +V LPAE +
Sbjct: 1101 --------ATAEEAKRLAKGKSVVTAS------------------VNMVFTLPAEIGTKQ 1134
Query: 401 SEVTENEEDYYDEEEPDDNPLCYYVMQKGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDE 460
++V E EE+ K + E+AIF++P HLKPL++ V+
Sbjct: 1135 ADVDEVEEE----------------SAKLILLPEQAIFEKPEGTENRHLKPLYINGYVNG 1178
Query: 461 KGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTGSSLGAIMLNITVG 520
K ++K++VDGGA +NLMP +KLG+ DLI +MVL D+ G + G + +TVG
Sbjct: 1179 KPMSKMMVDGGAEVNLMPYATFRKLGRNVEDLIKTNMVLIDFGGNLSETKGVSNVELTVG 1238
Query: 521 TVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKLDGVVENVQADQSYYL 580
T F V+ +Y+LLLGR+WIH +PST+HQ + W+ D +E V AD +
Sbjct: 1239 NKTIPTTFFVIDGNGSYSLLLGRDWIHANCCIPSTMHQCLIQWQ-DDKIEIVPADSQLKM 1297
Query: 581 AETGYVGKKNFEKSLA----TIAPLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAM 636
+ E S T+ LD Q F + D + +++ +P
Sbjct: 1298 ENPSCYFEGVVEGSNVYIKDTVDDLDDKQGQGF-------ISADDLEEIDIGPGDRPRPT 1350
Query: 637 SGWHNDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQ 696
K+ +TE++ ++++LLKEF+DCFAW+Y EMPGLSR +VE +LPIK +P +Q
Sbjct: 1351 FIC-----KNLSTEFRAKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPGVRPHQQ 1405
Query: 697 LPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAA 756
RR D+L +K EI+RL FIR RY +W++N LN A
Sbjct: 1406 PLRRCKADMLEPVKVEIKRLYDACFIRPCRYAEWVSN-------------------LNKA 1446
Query: 757 TPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWV 816
TPKDEY MPVA+ +VD+ +G++ LS +DG GYNQIF+AEED+ KTAFRCPGA+G +EWV
Sbjct: 1447 TPKDEYPMPVADQLVDAASGNKILSYMDGNVGYNQIFMAEEDIHKTAFRCPGAIGLFEWV 1506
Query: 817 VMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKY 876
VM FGLK+AGATYQR MN I+HD I ++VYIDD+VVKS +DH+A LRK FER RKY
Sbjct: 1507 VMTFGLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKY 1566
Query: 877 GLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFL 936
GLKMNP KCAFGV G FLGF+VH++GIE+ + AI PP +K +LQ + GKINF+
Sbjct: 1567 GLKMNPTKCAFGVSVGQFLGFLVHERGIEVTQRSVNAIKKIQPPENKTELQEMNGKINFV 1626
Query: 937 RRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKL 996
RRFI+ LS + + F+PLLRLK + F W AE QKA D++K YLSSP V+ PP +G +L
Sbjct: 1627 RRFISYLSGRLEPFTPLLRLKADQQFTWGAEQQKALDDIKEYLSSPPVLIPPQKGISFRL 1686
Query: 997 YISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYI 1056
Y+SA + +IGS+L QE D KER +FYLSR L D ETRY+ +EKLCLCLYFSC +L +Y+
Sbjct: 1687 YLSAGEKSIGSVLIQE-LDGKERVVFYLSRRLLDVETRYSPMEKLCLCLYFSCTRLSHYL 1745
Query: 1057 KPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHT 1116
+ V D+IK+MLS PIL R+GKW +LTE+ L Y KA+KGQAIADF+V+H
Sbjct: 1746 LSNECTVICKADVIKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAIKGQAIADFIVEHC 1805
Query: 1117 LPKEIVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEA 1176
+ + V + PW FFDGS + GIG+ I+SP G KF + IK +NN+AEYEA
Sbjct: 1806 --DDSIGSVEVVPWTSFFDGSVCTHDCGIGLVIISPRGACFKFAYTIKPYATNNQAEYEA 1863
Query: 1177 LISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLS 1236
++ GL++L A + I GDS LVI QL EY+C S+ L Y K L+ +F L
Sbjct: 1864 VLKGLQLLKEVEADAIEIMGDSLLVISQLAGEYECKSDTLMVYNEKCQELMQEFRLVTLK 1923
Query: 1237 HVSRVDNQEANELAQIASGYMVDKCRLKELI-EVKEKLNLSDLNILVIDNMAPNDWRKPI 1295
HVSR N EAN+LAQ ASGY K +I +VK + I + DWR +
Sbjct: 1924 HVSREQNIEANDLAQGASGY-------KPMIKDVKAE----------IAAITAGDWRYDV 1966
Query: 1296 VDYLQNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVHDGLCG 1355
YL NP + RK +Y+A+ Y ++ +EL+ + +DG LLKCLS D A +AI VH+G+CG
Sbjct: 1967 HQYLHNPSQSASRKLRYKALKYTLLDDELYYRTIDGVLLKCLSADQAKVAIGEVHEGICG 2026
Query: 1356 AHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIKPWPFR 1415
HQ+ KMKW+L R +WPT+++DC +Y KGCQD Q+ IQ PAS ++ IIKPWPFR
Sbjct: 2027 THQSAHKMKWLLRRARYFWPTMLEDCFKYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFR 2086
Query: 1416 GWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLP 1475
GW +D+IG I+ SS+ HK+I+VA DYFTK VEAIPL+ V I F+Q HI+YRFG+P
Sbjct: 2087 GWGIDMIGMISRPSSKGHKFILVATDYFTKLVEAIPLKKVDSGDAIQFVQEHIIYRFGIP 2146
Query: 1476 ESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKHVGRKP 1535
+++TTDQG++FV + F +S GIKLLNS+PYYAQANGQ EA+NK+LI LIK+ P
Sbjct: 2147 QTITTDQGSIFVSDEFVQFVDSMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKNSDYP 2206
Query: 1536 KRWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQ 1584
++WH L + LW+YR + + P++L YG EA+LP EV + S R +
Sbjct: 2207 RQWHTRLDEALWSYRMACHGSIQVPPYKLVYGHEAILPWEVRIGSRRTE 2255
>gb|AAT93841.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1739
Score = 1064 bits (2751), Expect = 0.0
Identities = 553/1145 (48%), Positives = 753/1145 (65%), Gaps = 52/1145 (4%)
Query: 387 ICIVSILPAEFDRISEVTENEEDYYDEEEPDDNPLCYYVMQKGSVEDERAIFQRPTEQMK 446
I +V LP EF + + + D +EE K + E+A+FQ+P
Sbjct: 645 INMVFTLPVEFG----IDQADVDEVEEESA-----------KLVLSPEQAVFQKPEGTEN 689
Query: 447 SHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKT 506
HLKPL++ V+ K ++K++VDGGA +NLMP +KLG+ DLI +MVL D+ G
Sbjct: 690 RHLKPLYINGYVNGKLMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNP 749
Query: 507 GSSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKLD 566
+ G + + +TVG+ T F+V+ K +Y+L LGR+WIH +PST+HQ + W+ D
Sbjct: 750 SETKGVLNVGLTVGSKTIPTTFLVIDGKGSYSLFLGRDWIHANCCIPSTMHQCLIQWQGD 809
Query: 567 GVVENVQADQSYYLAETGYVGKKNFEKSLATIAPLDTVANQYFNPYSEYSVMLDPIRGLN 626
V E V AD + Y + E S ++ DTV + Y + + + D + ++
Sbjct: 810 KV-EIVPADSQLKMENPSYYFEGVVEGS--SVYTKDTVDDLY-DKQGQGFMSADDLEEID 865
Query: 627 LNEAYKPDAMSGWHNDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLP 686
+ +P K+ + E++ ++++LLKEF+DCFAW+Y EMPGLSR +VE +LP
Sbjct: 866 IGPGDRPRPTF-----VSKNLSPEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLP 920
Query: 687 IKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRV 746
IK +P +Q RR D+L +K EI+RL FIR RY W++++VPVIKKNGK+RV
Sbjct: 921 IKPGVRPRQQPLRRCKADMLEPVKAEIKRLYDAGFIRPWRYAKWVSSIVPVIKKNGKVRV 980
Query: 747 CIDFRDLNAATPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRC 806
CIDFRDLN ATPKDEY MPVA+ +VD+ +G++ LS +DG +GYNQIF+AEED+ KTAFRC
Sbjct: 981 CIDFRDLNKATPKDEYPMPVADQLVDAASGNKILSFMDGNAGYNQIFMAEEDIHKTAFRC 1040
Query: 807 PGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHL 866
P A+G +EWVVM FGLK+AGATYQR MN I+HD I + VYIDD+VVKS +D +A L
Sbjct: 1041 PCAIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIGWLVGVYIDDVVVKSKEIEDQIADL 1100
Query: 867 RKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQL 926
RK FER RKYGLKMNP KCAFGV AG FLGF+VH +GIE+ + AI PP +K +L
Sbjct: 1101 RKVFERTRKYGLKMNPTKCAFGVSAGQFLGFLVHDRGIEVTQRSVNAIKKIQPPENKTEL 1160
Query: 927 QSLLGKINFLRRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMA 986
Q ++GKI+F+RRFI+NLS + + F+PLLRLK + F AE QKA D++K YLSSP V+
Sbjct: 1161 QEMIGKIHFVRRFISNLSGRLEPFTPLLRLKADQQFTCGAEQQKALDDIKEYLSSPPVLI 1220
Query: 987 PPIRGKPMKLYISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLY 1046
PP +G P +LY+SA + +IGS+L QE E KER +FYLSR L +AETRY+ ++KLCLCLY
Sbjct: 1221 PPHKGIPFRLYLSAGEKSIGSVLIQELE-GKERVVFYLSRRLLNAETRYSPVKKLCLCLY 1279
Query: 1047 FSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQ 1106
FSC +L++Y+ + V D++K+MLS PIL R+GKW +LTE+ Y KA+KGQ
Sbjct: 1280 FSCTRLRHYLLSNECTVICKADVVKYMLSAPILKGRVGKWIFSLTEFDHRYESPKAIKGQ 1339
Query: 1107 AIADFLVDHTLPKEIVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKN 1166
AIADF+V+H + + V I PW LFFDGS +G GIG+ I+SP G +F + IK
Sbjct: 1340 AIADFIVEHR--DDSIGSVEIVPWTLFFDGSVCTHGCGIGLVIISPRGACFEFAYTIKPY 1397
Query: 1167 CSNNEAEYEALISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNL 1226
+NN+AEYEA++ GL++L A + I GDS LVI QL EY+C ++ L Y K L
Sbjct: 1398 ATNNQAEYEAVLKGLQLLKKVEADTIEIMGDSLLVISQLAGEYECKNDTLMVYNEKCQEL 1457
Query: 1227 LAKFDEARLSHVSRVDNQEANELAQIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNM 1286
+ +F R+ N EAN+LAQ ASGY K + D+ + I M
Sbjct: 1458 MKEF---------RLQNIEANDLAQGASGY---------------KPMIKDVKV-EIAAM 1492
Query: 1287 APNDWRKPIVDYLQNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAI 1346
+DWR + YL NP + RK +Y+A+ Y ++ +EL+ + +DG LLKCLS D A +AI
Sbjct: 1493 TADDWRYDVHRYLSNPSQSASRKLRYKALKYTLLDDELYYRTIDGVLLKCLSADQAKVAI 1552
Query: 1347 SAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELH 1406
VH+G+CG HQ+ KMKW+L R G +W T+++DC Y KGCQD Q+ IQ PAS ++
Sbjct: 1553 GEVHEGICGTHQSAHKMKWLLRRAGYFWSTMLEDCFRYYKGCQDCQKFGAIQRAPASAMN 1612
Query: 1407 SIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQN 1466
IIKPWPFRGW +D+IG INP SS+ HK+I+VA DYFTKWVEAIPL+ V I F+Q
Sbjct: 1613 PIIKPWPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQFVQE 1672
Query: 1467 HIVYRFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISL 1526
+I+YRFG P+++TTDQG++FV + FA+S IKLLNS+PYYAQANGQ EA+NK+LI L
Sbjct: 1673 YIIYRFGTPQTITTDQGSIFVSDEFVQFADSMSIKLLNSSPYYAQANGQAEASNKSLIKL 1732
Query: 1527 IKKHV 1531
IK+ +
Sbjct: 1733 IKRKI 1737
Score = 85.9 bits (211), Expect = 1e-14
Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 1 MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAES 60
++ F SL+ +AFTWF++L S+++WA LE+ FH F+ G ++ L DL ++K++ E
Sbjct: 353 VRLFWLSLSGSAFTWFSSLPYGSINSWADLEKQFHSYFYSGVHEMKLSDLTAIKQRHDEP 412
Query: 61 IDDYLNRFRMLKSRCFT-HVPEHELVVLAAGGLE--YSIRKKIDTQYIRDMSLLADRPRE 117
+ +++ RFR ++++CF+ + + +L LA + + +K+ R + R
Sbjct: 413 VHEHIQRFREIRNKCFSLSLTDAQLANLAFQDFDSLSHLIQKVTLHEHRSAEVRKSSKRV 472
Query: 118 NKL---------GEENP----------KSTIPA--------VKTYTFDVTKCDAIYDILV 150
N + E++P K IP V+ Y FD+TK D I+D+L+
Sbjct: 473 NHVCPYMYGSDDDEDDPEIAAAEWVKSKKVIPCQWVKSSGKVEKYDFDITKADKIFDLLL 532
Query: 151 SDGLLVVPKDQKLPSPEQRKGKK 173
+ + +P +PS E+ GKK
Sbjct: 533 REKQIQLPAGHTIPSTEE-LGKK 554
>ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultivar-group)]
gi|38345832|emb|CAE01862.2| OSJNBa0070M12.15 [Oryza
sativa (japonica cultivar-group)]
Length = 1685
Score = 956 bits (2472), Expect = 0.0
Identities = 499/1041 (47%), Positives = 676/1041 (64%), Gaps = 51/1041 (4%)
Query: 387 ICIVSILPAEFDRISEVTENEEDYYDEEEPDDNPLCYYVMQKGSVEDERAIFQRPTEQMK 446
I +V LPAEF + + + D +EE K + ERA+F++P
Sbjct: 690 INMVFTLPAEFG----IDQADVDELEEESA-----------KLVLSPERAVFEKPEGTEN 734
Query: 447 SHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKT 506
HLKPL++ V+ K ++K++VDGGA +NLMP +KLG+T DL+ +MVL D+ G
Sbjct: 735 RHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRTTEDLMKTNMVLKDFGGNP 794
Query: 507 GSSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKLD 566
+ G + + +TVG+ T F V+ K +Y+LLLGR+WIH +PST+HQ + W+ D
Sbjct: 795 SETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD 854
Query: 567 GVVENVQADQSYYLAETGYVGKKNFEKSLA----TIAPLDTVANQYFNPYSEYSVMLDPI 622
V E V AD + Y + E S T+ LD Q F + LD +
Sbjct: 855 KV-EIVPADSRLKMKNPSYYFEGVVEGSSIYAKDTVDDLDDKQGQGFMSADD----LDEV 909
Query: 623 RGLNLNEAYKPDAMSGWHNDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVE 682
+ + +P +S K+ ++E++ ++++LLKEF+DCFAW+Y EMPGLSR +VE
Sbjct: 910 -DIGPGDRPRPTFIS-------KNLSSEFRTKLMELLKEFRDCFAWEYYEMPGLSRSIVE 961
Query: 683 LKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNG 742
+LP+K +P +Q PRR D+L +K EI+RL FI RY +W++++VPVIKKNG
Sbjct: 962 HRLPLKPGIRPHQQPPRRCKADMLEPVKAEIKRLYDAGFIHPCRYAEWVSSIVPVIKKNG 1021
Query: 743 KMRVCIDFRDLNAATPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKT 802
K+RVCIDFRDLN ATPKDEY MPVA+ +VD+ +GH+ LS +DG +GYNQIF+ EED+ KT
Sbjct: 1022 KVRVCIDFRDLNKATPKDEYPMPVADQLVDAASGHKILSFMDGNAGYNQIFMTEEDIHKT 1081
Query: 803 AFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDH 862
FRCPGA+G +EWVVM FGLK+AGATYQR MN I+HD I ++VYIDD+VVKS +DH
Sbjct: 1082 VFRCPGAIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSREIEDH 1141
Query: 863 LAHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTS 922
+A LRK FER RKYGLKMNP KCAFGV AG FLGF+VH++GIEI + AI PP +
Sbjct: 1142 IADLRKVFERTRKYGLKMNPTKCAFGVSAGQFLGFLVHERGIEIPQRSINAIKKIKPPGN 1201
Query: 923 KKQLQSLLGKINFLRRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSP 982
K +LQ ++GKINF+RRFI+NLS K + F+PLLRL+ + F W AE QKA D +K YLSSP
Sbjct: 1202 KTELQEMIGKINFVRRFISNLSGKLEPFTPLLRLRADQQFTWGAEQQKALDNIKEYLSSP 1261
Query: 983 HVMAPPIRGKPMKLYISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLC 1042
V+ PP +G P LY+SA D +IGS+L QE E KER +FYLSR L DAETRY+ +EKLC
Sbjct: 1262 PVLIPPQKGIPFWLYLSAGDKSIGSVLIQELE-GKERVVFYLSRRLLDAETRYSPVEKLC 1320
Query: 1043 LCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKA 1102
LCLYFSC KL++Y+ + V D+IK+MLS PIL R+GKW +LTE+ L + KA
Sbjct: 1321 LCLYFSCTKLRHYLLSNECTVVCKADVIKYMLSAPILKVRVGKWIFSLTEFDLRHESPKA 1380
Query: 1103 VKGQAIADFLVDHTLPKEIVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFR 1162
+KGQA+ADF+V H + V I PW LFFDGS +G GIG+ I++P G +F +
Sbjct: 1381 IKGQAVADFIVGHR--DGSIGLVDIMPWVLFFDGSVCSHGYGIGLVIIAPWGASFEFAYA 1438
Query: 1163 IKKNCSNNEAEYEALISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTK 1222
I + +NN+AEYEA++ GL++L A + I GDS LVI QL EY+C + L YY K
Sbjct: 1439 ITHHVTNNQAEYEAVLKGLQLLQEVAADAIEIMGDSLLVISQLAGEYECKDDTLMVYYEK 1498
Query: 1223 ANNLLAKFDEARLSHVSRVDNQEANELAQIASGYMVDKCRLKELIEVKEKLNLSDLNILV 1282
L+++F L H+SR N EAN+L+Q ASGY K D+ I
Sbjct: 1499 CRTLISEFRLVTLRHISREQNIEANDLSQGASGY---------------KPMTKDIEI-E 1542
Query: 1283 IDNMAPNDWRKPIVDYLQNPVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDA 1342
I + +DWR + YLQNP + RK +Y+A+ Y ++ ++L+ + +DG LLKCLS D A
Sbjct: 1543 IATITADDWRYDVFQYLQNPSQSALRKLRYKALKYTLLDDDLYYRTIDGVLLKCLSADQA 1602
Query: 1343 FIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPA 1402
+AI +H+G+CG HQ+ KMKW+L R G +WPT+++DC Y KGCQD Q+ IQ PA
Sbjct: 1603 KVAIGEIHEGICGTHQSAHKMKWLLRRAGYFWPTMLEDCFRYYKGCQDCQKFGAIQRAPA 1662
Query: 1403 SELHSIIKPWPFRGWALDLIG 1423
S ++ II+PWPFRGW +D+IG
Sbjct: 1663 SAMNPIIQPWPFRGWGIDMIG 1683
Score = 103 bits (258), Expect = 4e-20
Identities = 64/233 (27%), Positives = 116/233 (49%), Gaps = 43/233 (18%)
Query: 16 FTTLAPRSVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAESIDDYLNRFRMLKSRC 75
F+ + + V++WA LE+ FH F+ G ++ L DL ++K++ E + +Y+ RFR ++++C
Sbjct: 244 FSKFSGQDVNSWADLEKQFHSYFYSGVHEMKLSDLTAIKQRHDEPVHEYIQRFREMRNKC 303
Query: 76 FT-HVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLL-----------ADRPRENKL--- 120
F+ + + +L LA G+ IR+K + +S L A+ R +K
Sbjct: 304 FSLSLTDAQLADLAFQGMIPPIREKFSYEDFDSLSHLVQKVILHEQRSAEARRSSKRVNH 363
Query: 121 --------GEENPKSTIPAVK--------------------TYTFDVTKCDAIYDILVSD 152
+++ S I AV+ Y FD+TK D I+D+L+ +
Sbjct: 364 VCPYMYGSDDDDDDSEIAAVEWVRSKKVIPCQWVRNSGKEERYDFDITKADKIFDLLLRE 423
Query: 153 GLLVVPKDQKLPSPEQRKGKKYCKYHNFFGHWTSQCVRFRDLVQGALDSGRLK 205
+ +P +PS E+ ++YCK+HN H T+ C FR +Q A++ G++K
Sbjct: 424 KQIQLPAGHVIPSAEELGKRRYCKWHNSGSHSTNDCKVFRQQIQVAIEGGKIK 476
>ref|XP_474893.1| OSJNBa0021F22.20 [Oryza sativa (japonica cultivar-group)]
gi|21743195|emb|CAD40050.1| OSJNBa0085C10.2 [Oryza sativa
(japonica cultivar-group)] gi|38346487|emb|CAE03726.2|
OSJNBa0021F22.20 [Oryza sativa (japonica cultivar-group)]
Length = 861
Score = 907 bits (2344), Expect = 0.0
Identities = 446/843 (52%), Positives = 593/843 (69%), Gaps = 19/843 (2%)
Query: 645 KDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPD 704
K+ ++E++ ++++LLKEF+DCFAW+Y EMPGLSR +VE +LPIK +P +Q PRR D
Sbjct: 36 KNLSSEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPGVRPRQQPPRRCKAD 95
Query: 705 VLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHM 764
+L +K EI+RL FI RY +W++++VPVIKKNGK+RVCIDFRDLN ATPKDEY M
Sbjct: 96 MLEPVKAEIKRLYDAGFIHPYRYAEWVSSIVPVIKKNGKVRVCIDFRDLNKATPKDEYPM 155
Query: 765 PVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKN 824
PVA+ + D+ +G++ LS +D +GYNQIF+AEED+ KTAFRCP A+G +EWVVM F LK+
Sbjct: 156 PVADQLFDAASGNKILSFMDRNTGYNQIFMAEEDIHKTAFRCPSAIGLFEWVVMTFDLKS 215
Query: 825 AGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLK 884
AGATYQR MN I+HD I + ++V IDD+VVKS DDH+A LRK FER RKYGLKMNP K
Sbjct: 216 AGATYQRAMNYIYHDLIGSLVEVDIDDVVVKSKEVDDHIADLRKVFERTRKYGLKMNPTK 275
Query: 885 CAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLS 944
CAFGV A FLGF+VH++GIE+ + AI PP +K +LQ ++GKINF+RRFI+NLS
Sbjct: 276 CAFGVSARQFLGFLVHERGIEVTQRSVNAIQKIKPPENKTELQEMIGKINFVRRFISNLS 335
Query: 945 EKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGT 1004
+ + F+PLLRLK + F W AE QKA D +K YLSSP V+ PP +G P +LY+SA + +
Sbjct: 336 GRLEPFTPLLRLKADQQFTWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFRLYLSAGEKS 395
Query: 1005 IGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVF 1064
GS+L QE E KER +FY+SR L DAETRY+ +EKLCLCLYF C +L++Y+ + V
Sbjct: 396 NGSVLIQELE-GKERVVFYISRRLLDAETRYSPMEKLCLCLYFLCTRLRHYLLSNECTVI 454
Query: 1065 SHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKEIVTY 1124
D++++MLS PIL +IG W +LTE+ L Y KA+KGQAIADF+V+H + +
Sbjct: 455 CKADVVRYMLSAPILKGQIGNWIFSLTEFDLRYESPKAIKGQAIADFIVEHR--DDSIGS 512
Query: 1125 VGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISGLEIL 1184
V I PW LFFDGS +G GIG+ I+SP G +F + IK +NN+AEYEA++ GL++L
Sbjct: 513 VEIVPWTLFFDGSVCTHGCGIGLVIISPRGACFEFAYTIKSYATNNQAEYEAVLKGLQLL 572
Query: 1185 IAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSRVDNQ 1244
A + I GDS LVI QL EY+C S+ Y K L+ +F L HVSR N
Sbjct: 573 KEVEANIIEIMGDSLLVISQLAGEYECKSDTFIVYNEKCLELMKEFRLVTLKHVSREQNL 632
Query: 1245 EANELAQIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKPIVDYLQNPVG 1304
EAN+LAQ ASGY K + D+ + I M+ +DWR + YL NP
Sbjct: 633 EANDLAQGASGY---------------KPMIKDVKV-EIAAMSADDWRYDVHQYLSNPSQ 676
Query: 1305 TTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVHDGLCGAHQAGIKMK 1364
+ RK +Y+A+ Y ++G+EL+ + +DG LLKCLS D A +AI VH+G+CG HQ+ KMK
Sbjct: 677 SASRKLRYKALKYTLLGDELYYRVIDGVLLKCLSADQAKVAIGEVHEGICGTHQSAHKMK 736
Query: 1365 WILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIKPWPFRGWALDLIGE 1424
W+L R G +WPT+++ Y KGCQD Q+ IQ PAS ++ IIKPWPFRGW +D+IG
Sbjct: 737 WLLRRTGYFWPTMLEVYFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWEIDMIGM 796
Query: 1425 INPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGT 1484
INP SS+ HK+I+VA DYFTKWVEAIPL+ V I F+Q HI+Y+FGLP+++T DQG+
Sbjct: 797 INPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYQFGLPQTITMDQGS 856
Query: 1485 VFV 1487
+F+
Sbjct: 857 IFM 859
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 848 bits (2191), Expect = 0.0
Identities = 453/1103 (41%), Positives = 658/1103 (59%), Gaps = 52/1103 (4%)
Query: 632 KPDAMSGWHNDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDK 691
+P +SG +EE++ + L EF+DCFAW Y EMPGL + KL I
Sbjct: 1790 RPIFVSGMLTEEERE-------DYRSFLMEFRDCFAWTYKEMPGLDSRVATHKLAIDPQF 1842
Query: 692 KPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFR 751
+PVKQ PRR P+ ++ E++RL+ FI+ +Y WLAN+VPV KKNG++RVC+DFR
Sbjct: 1843 RPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQYPRWLANIVPVEKKNGQVRVCVDFR 1902
Query: 752 DLNAATPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALG 811
DLN A PKD++ +P+ EM+VDST G+ LS GYNQI + D TAFR P G
Sbjct: 1903 DLNRACPKDDFPLPITEMVVDSTTGYGALS------GYNQIKMDLLDAFDTAFRTPK--G 1954
Query: 812 TYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFE 871
+ + VMPFGLKNAGATYQR M + D I ++ Y+DD+VVK+ + H LR FE
Sbjct: 1955 NFYYTVMPFGLKNAGATYQRAMQFVLDDLIHHSVECYVDDMVVKTKDHEHHQEDLRIVFE 2014
Query: 872 RMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLG 931
R+R++ LKMNPLKCAF V +G FLGFV+ +GIEI K KAIL+ PP K L+ L G
Sbjct: 2015 RLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPKKIKAILNMPPPQELKDLRKLQG 2074
Query: 932 KINFLRRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRG 991
K+ ++RRFI+NLS + + FS L+ KK F W+ E Q FD +K YL +P V+A P++G
Sbjct: 2075 KLAYIRRFISNLSGRIQPFSKLM--KKGTPFVWDEECQNGFDSIKRYLLNPPVLAAPVKG 2132
Query: 992 KPMKLYISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVK 1051
+P+ LYI+ +IG++LAQ +++ KE A +YLSR + AE Y+ IEKLCL L F+ K
Sbjct: 2133 RPLILYIATQPASIGALLAQHNDEGKEVACYYLSRTMVGAEQNYSPIEKLCLALIFALKK 2192
Query: 1052 LKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADF 1111
L++Y+ + + + D I+++LS+P+L R+GKWAL + EY +T+ P KA+KGQA+A+F
Sbjct: 2193 LRHYMLAHQIQLIARADPIRYVLSQPVLTGRLGKWALLMMEYDITFVPQKAIKGQALAEF 2252
Query: 1112 LVDHTLP-----------KEIVTYVGIQPWKLFFDGSSHKN----GT-----GIGMFIVS 1151
L H +P +EI T + W+L+FDG+S K+ GT G G+ +
Sbjct: 2253 LATHPMPDDSPLIANLPDEEIFTAELQEQWELYFDGASRKDINPDGTPRRRAGAGLVFKT 2312
Query: 1152 P-GGIPTKFKFRIKKNCSNNEAEYEALISGLEILIAFGAKNVVIKGDSELVIKQLTKEYK 1210
P GG+ +K+ CSNNEAEYEALI GL + ++ +++ GDS L+I+Q+ Y+
Sbjct: 2313 PQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYE 2372
Query: 1211 CVSENLARYYTKANNLLAKFDEARLSHVSRVDNQEANELAQIASGYMVDKCRLKELIEVK 1270
L YYT A L+ KF+ + HV R N A+ LA++A+ + +++ V+
Sbjct: 2373 VRKPELVPYYTVARRLMDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPAQIV-VE 2431
Query: 1271 EKLNL--------SDLNILVIDNMAPNDWRKPIVDYLQN---PVGTTDRKTKYRAM-SYV 1318
E+ L ++NI++ ++ DWR+P +DY ++ P +R+ R + SY+
Sbjct: 2432 ERWLLPAVLELIPEEVNIIITNSAEEEDWRQPFLDYFKHGSLPEDPVERRQLQRRLPSYI 2491
Query: 1319 IMGNELFKKNV-DGTLLKCLSEDDAFIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTI 1377
L+K++ LL+C+ +A + VH G+CG HQ+G KM + G YWP I
Sbjct: 2492 YKAGVLYKRSYGQEVLLRCVDRSEANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGI 2551
Query: 1378 MKDCMEYDKGCQDFQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYII 1437
M DC++ K C Q H +H P + LH + WPF W +D+IG INP SSR H++I+
Sbjct: 2552 MADCLKTAKTCHGCQIHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFIL 2611
Query: 1438 VAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFAES 1497
A DYF+KW EA+PL+ V VI+F++ HI+YRFG+P +T+D F QK+ F E
Sbjct: 2612 TATDYFSKWAEAVPLREVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEK 2671
Query: 1498 WGIKLLNSTPYYAQANGQVEAANKTLISLIKKHVGRKPKRWHQTLGQVLWAYRNSPKEAT 1557
+ IK ST YY QANG EA NKTL ++KK V + + WH L + LWAYR + + T
Sbjct: 2672 YKIKWNYSTGYYPQANGMAEAFNKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPT 2731
Query: 1558 GATPFRLAYGQEAVLPAEVYLQSCRIQRQEEIPSEDYWNMMLDELVNLDEERLSALDILT 1617
ATP+ L YG EAVLP E+ L S R+ +E+ ++ + EL ++EERL AL L
Sbjct: 2732 QATPYSLVYGNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLE 2791
Query: 1618 RQKDRVAKAYNKKVRAKSFMPGDYVWKVVLPVDKRDKRYGKWAPNWEGPFTVEKILLNNA 1677
+ + +AY+K V+ + F G+ V + P+ K GK+ P WEGP+ +E+ A
Sbjct: 2792 LYRQNMVRAYDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGA 2851
Query: 1678 YSIKELGGRNRQMTVNGKYLKTY 1700
Y + + G +NG++LK Y
Sbjct: 2852 YQLIDHQGSQPMPPINGRFLKKY 2874
Score = 91.3 bits (225), Expect = 3e-16
Identities = 44/138 (31%), Positives = 77/138 (54%)
Query: 448 HLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTG 507
H +PL++ + + ++L+D G+ +N++P L + G T DL P D+V+ ++ +
Sbjct: 1378 HNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAGFTTKDLEPIDVVICGFDNQGK 1437
Query: 508 SSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKLDG 567
+LGAI + I + T + F V+ + +Y+ LLGR WIH VPSTLHQ + +G
Sbjct: 1438 PTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWIHKYRVVPSTLHQCLKFLDGNG 1497
Query: 568 VVENVQADQSYYLAETGY 585
V + + ++ S Y + Y
Sbjct: 1498 VQQRITSNFSPYTIQESY 1515
Score = 37.7 bits (86), Expect = 3.4
Identities = 30/127 (23%), Positives = 56/127 (43%), Gaps = 5/127 (3%)
Query: 20 APR----SVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAESIDDYLNRFRMLKSRC 75
APR S+ WA ++ +F + F + S+ +L+ V++ E+IDDY+ RFR
Sbjct: 793 APRGENPSIGNWATMKEVFKKHFVAMKKDFSIVELSQVRQWRDEAIDDYVIRFRNSFVCL 852
Query: 76 FTHVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLLADRPRENKLGEENPKSTIPAVKTY 135
+ + + + G++ ++ + + S L+ KL E + K
Sbjct: 853 AREMHLEDAIEMCVHGMQQHWSLEVSRREPKTFSALSSAVAATKLEFEKSPQIMELYKNA 912
Query: 136 T-FDVTK 141
+ FD TK
Sbjct: 913 SAFDPTK 919
Score = 37.0 bits (84), Expect = 5.9
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 133 KTYTFDVTKCDAIYDILVSDGLLVVPKDQKLPSPEQRKGKKYCKYHNFFGHWTSQCVRFR 192
K Y F +++ L+ L +P+ ++ YC YH + GH C+ F+
Sbjct: 977 KQYIFRRELVKDMFNQLMEHRALNLPEPRRPDQVTMTDNPLYCPYHRYIGHAIEDCIAFK 1036
Query: 193 DLVQGALDSGRL 204
+ +Q A++ R+
Sbjct: 1037 EWLQRAVNEKRI 1048
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 773 bits (1996), Expect = 0.0
Identities = 409/1085 (37%), Positives = 637/1085 (58%), Gaps = 46/1085 (4%)
Query: 652 QNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDVLVKIKE 711
+ ++++L+E+ + FAW Y +MPGL D+V +LP++E VKQ RR PD+ KIKE
Sbjct: 1186 KRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKE 1245
Query: 712 EIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPVAEMMV 771
E+++ F+ Y W+AN+VPV KK+GK+R+C+D+RDLN A+PKD++ +P +++V
Sbjct: 1246 EVQKQWDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLV 1305
Query: 772 DSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQR 831
D+TA S +DG+SGYNQI +A ED+ KT F P GT+ + VMPFGLKNAGATYQR
Sbjct: 1306 DNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPW--GTFCYKVMPFGLKNAGATYQR 1363
Query: 832 VMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKCAFGVIA 891
M T+FHD + ++VY+DD++ KS + ++HL +L+K F+R+RK+ L++NP KC FGV +
Sbjct: 1364 AMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRS 1423
Query: 892 GDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSEKTKSFS 951
G LGF+V +KGIE++ K KAI + P ++KQ++ LG++N++ RFI++L+ +
Sbjct: 1424 GKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIF 1483
Query: 952 PLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTIGSMLAQ 1011
LLR K A +W + QKAFD++K YL P ++ PP+ G+P+ +Y+S T+ ++G +L +
Sbjct: 1484 KLLR--KNQAIKWNDDCQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLGR 1541
Query: 1012 EDEDS-KERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDII 1070
DE KE AI+YLS+ D ETRY+++EK C L ++ +L+ Y+ ++ S D +
Sbjct: 1542 HDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPV 1601
Query: 1071 KHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTL----------PKE 1120
K++ KP L R+ +W + LTEY + Y KA+KG ++D+L + + P E
Sbjct: 1602 KYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDE 1661
Query: 1121 IVTYVGIQP---------------WKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKK 1165
+ Y+ ++ W L FDG+ + NG G+G +++P G F R+
Sbjct: 1662 DIMYLKMKDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLTF 1721
Query: 1166 NCSNNEAEYEALISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANN 1225
+ +NNEAEYEA I G+E I K + I GDS LV+ Q+ ++ +L Y
Sbjct: 1722 DVTNNEAEYEACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRR 1781
Query: 1226 LLAKFDEARLSHVSRVDNQEANELAQIASGYMVDKCRLKELIEV---KEKLNLSDLNILV 1282
+L F + +L HV R +NQ A+ LA ++S V+ + V + + +V
Sbjct: 1782 ILTFFKKVKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESVV 1841
Query: 1283 IDNMAPNDWRKPIVDYLQN---PVGTT--DRKTKYRAMS--YVIMGNELFKKNVDGTLLK 1335
ID W I ++L+ P G + D+KT R Y+ + L+K+N D LL+
Sbjct: 1842 IDE---KPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLR 1898
Query: 1336 CLSEDDAFIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHA 1395
C+ +A + + VH+G G H G M L R G YW T+ DC +Y + C Q +A
Sbjct: 1899 CMDRPEADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIYA 1958
Query: 1396 GIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNV 1455
HVP S L+ + PWPF W +D+IG+I P +S H++I+VAIDYFTKWVEA N+
Sbjct: 1959 DRVHVPPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAASYANI 2018
Query: 1456 TQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQ 1515
T+ V FI+ I+ R+G+PE + TD G+ + + + + I+ NS+PY + NG
Sbjct: 2019 TKQVVTRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRPKMNGA 2078
Query: 1516 VEAANKTLISLIKKHVGRKPKRWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAE 1575
VEAANK + +++K V K WH+ L L YR S + +TGATP+ L YG EAVLP E
Sbjct: 2079 VEAANKNIKKIVRKMVVTY-KDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVE 2137
Query: 1576 VYLQSCRIQRQEEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKS 1635
V + S R+ ++ ++ +EL ++E RL+ + + R+ +A+++KVR +S
Sbjct: 2138 VEIPSLRVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRS 2197
Query: 1636 FMPGDYVWKVVLPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGK 1695
+ GD V K +LP ++ GKW PN+EGP+ V+K+ A + + G + VN
Sbjct: 2198 YQIGDLVLKRILPPGTDNR--GKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVNSD 2255
Query: 1696 YLKTY 1700
+K Y
Sbjct: 2256 VVKKY 2260
Score = 78.2 bits (191), Expect = 2e-12
Identities = 40/119 (33%), Positives = 68/119 (56%), Gaps = 1/119 (0%)
Query: 446 KSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGK 505
++H K L + + ++ VLVD G+++N++PK +LKK+ L P D+++ ++
Sbjct: 823 RNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSDLIVRAFDRS 882
Query: 506 TGSSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRIS-IW 563
S G + L + +G +F V+ + Y+ LLGR WIH GAV STLHQ++ +W
Sbjct: 883 KRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVW 941
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 748 bits (1931), Expect = 0.0
Identities = 453/1277 (35%), Positives = 680/1277 (52%), Gaps = 78/1277 (6%)
Query: 448 HLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTG 507
H PL V + + V +VL+D G++++L+ K +L + T+ + P L+ ++G
Sbjct: 614 HNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFV 673
Query: 508 SSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRIS------ 561
++G I L I VG + F+V+ A YN++LG WIH + A+PST HQ +
Sbjct: 674 MTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG 733
Query: 562 IWKLDGVVENVQADQSYYLAETGYVGKKNFEKSLATIAPLDTVANQYFNPYSEYSVMLDP 621
I+ L E +SY +E N ++S DP
Sbjct: 734 IFTLRAPKEAKTPSRSYEESELCRTEMVNIDES-------------------------DP 768
Query: 622 IRGLNLNEAYKPDAMSGWHNDEEKDATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLV 681
R + + P + E++ LLK FAW ++M G+ +
Sbjct: 769 TRCVGVGAEISPSI----------------RLELIALLKRNSKTFAWSIEDMKGIDPAIT 812
Query: 682 ELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKN 741
+L + KPVKQ R+ P+ + EE+E+LLK I +Y +WLAN V V KKN
Sbjct: 813 AHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKN 872
Query: 742 GKMRVCIDFRDLNAATPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSK 801
GK RVC+D+ DLN A PKD Y +P + +V++T+G+ LS +D +SGYNQI + ++D K
Sbjct: 873 GKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEK 932
Query: 802 TAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDD 861
T+F GTY + VM FGLKNAGATYQR +N + D I ++VYIDD++VKS +D
Sbjct: 933 TSFVTDR--GTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPED 990
Query: 862 HLAHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPT 921
H+ HL K F+ + YG+K+NP KC FGV +G+FLG+VV K+GIE N + +AIL+ P
Sbjct: 991 HVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPR 1050
Query: 922 SKKQLQSLLGKINFLRRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSS 981
+ +++Q L G+I L RFI+ ++K F L LK+ F W+ + ++AF++LK YLS+
Sbjct: 1051 NAREVQRLTGRIAALNRFISRSTDKCLPFYNL--LKRRAQFDWDKDSEEAFEKLKDYLST 1108
Query: 982 PHVMAPPIRGKPMKLYISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAETRYTMIEKL 1041
P ++ P G+ + LYI+ +D + S+L +ED ++R IFY S+ L +AETRY +IEK
Sbjct: 1109 PPILVKPEVGETLYLYIAVSDHAVSSVLVREDR-GEQRPIFYTSKSLVEAETRYPVIEKA 1167
Query: 1042 CLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLK 1101
L + S KL+ Y + + V + ++ L P R+ KWA+ L+EY + + P
Sbjct: 1168 ALAVVTSARKLRPYFQSHTIAVLTDQP-LRVALHSPSQSGRMTKWAVELSEYDIDFRPRP 1226
Query: 1102 AVKGQAIADFLVDHTL--PKEIVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKF 1159
A+K Q +ADFL++ L + V+ + W L+ DGSS G+GIG+ +VSP +
Sbjct: 1227 AMKSQVLADFLIELPLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQ 1286
Query: 1160 KFRIKKNCSNNEAEYEALISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARY 1219
FR++ +NN AEYE LI+GL + + DS+L+ QL+ EY+ +E + Y
Sbjct: 1287 SFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAY 1346
Query: 1220 YTKANNLLAKFDEARLSHVSRVDNQEANELAQIASGYMVDKCRLKELIEVK--EKLNLSD 1277
+ F+ +LS + R DN A+ LA +A + L+ +I V+ +K ++
Sbjct: 1347 LKIVQLMTKDFENFKLSKIPRGDNAPADALAALA---LTSDSDLRRIIPVESIDKPSIDS 1403
Query: 1278 LNILVI----------DNMAPNDWRKPIVDYLQNPVGTTD----RKTKYRAMSYVIMGNE 1323
+ + I D P DWR I DYL + +D R+ + +A Y +M
Sbjct: 1404 TDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEH 1463
Query: 1324 LFKKNVDGTLLKCLSEDDAFIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCME 1383
L K + G +L CL + + H+G G H G + L + G YWPT++ DC
Sbjct: 1464 LLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKT 1523
Query: 1384 YDKGCQDFQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYF 1443
+ C+ QRHA H P L + + P+PF WA+D++G + +SRQ ++I+V DYF
Sbjct: 1524 FTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKRFILVMTDYF 1581
Query: 1444 TKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFAESWGIKLL 1503
TKWVEA + + V +F+ I+ R GLP + TD G+ F+ +F SW I+L
Sbjct: 1582 TKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLN 1641
Query: 1504 NSTPYYAQANGQVEAANKTLISLIKKHVGRKPKRWHQTLGQVLWAYRNSPKEATGATPFR 1563
STP Y Q NGQ EA NKT++S +KK + K W L VLW+YR +P+ AT TPF
Sbjct: 1642 KSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFA 1701
Query: 1564 LAYGQEAVLPAEVYLQSCRIQRQEEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRV 1623
AYG EA+ PAEV S R + P E MMLD L +L+E R +AL + +
Sbjct: 1702 HAYGMEAMAPAEVGYSSLRRSMMVKNP-ELNDRMMLDRLDDLEEIRNAALCRIQNYQLAA 1760
Query: 1624 AKAYNKKVRAKSFMPGDYVWKVVLPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKEL 1683
AK YN+KV + F GD V + V + + GK NWEG + V KI+ Y + +
Sbjct: 1761 AKHYNQKVHNRHFDVGDLVLRKVFE-NTAEINAGKLGANWEGSYQVSKIVRPGDYELLTM 1819
Query: 1684 GGRNRQMTVNGKYLKTY 1700
G T N +LK Y
Sbjct: 1820 SGTAVPRTWNSMHLKRY 1836
Score = 42.4 bits (98), Expect = 0.14
Identities = 54/235 (22%), Positives = 88/235 (36%), Gaps = 44/235 (18%)
Query: 4 FPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFF-RGECKVSLKDLASVKRKPAESID 62
F LT A WF+ L P S+ ++ QL F + + E + S DL S+ + ES+
Sbjct: 259 FIEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLR 318
Query: 63 DYLNRFRMLKSRCFTHVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLLADRPRENKLGE 122
+++RF+++ + VP+ +V + Y R + D +L R ++ E
Sbjct: 319 SFVDRFKLVVTN--ITVPDEAAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIE 376
Query: 123 ENPKSTIPAVKTYTFDVTKCDAIYDILVSDGLLVVPKDQKLP------------------ 164
+ I A K + TK A D +V + V P D P
Sbjct: 377 LEEEKLILARK---HNSTKTPACKDAVV---IKVGPDDSNEPRQHLDRNPSAGRKPTSFL 430
Query: 165 ----SPEQR-------------KGKKYCKYHNFFGHWTSQCVRFRDLVQGALDSG 202
+P+ + G YC+YH H T C + L+ SG
Sbjct: 431 VSTETPDAKPWNKYIRDADSPAAGPMYCEYHKSRAHSTENCRFLQGLLMAKYKSG 485
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 713 bits (1841), Expect = 0.0
Identities = 462/1374 (33%), Positives = 715/1374 (51%), Gaps = 102/1374 (7%)
Query: 368 EDEDMLEDFDDSEGKDLNIICIVSILPAEFDRISEVTENEEDYYDEEEPDDNPLCYYVMQ 427
+D D L F D K+LN I L E R ++TE E + + P Y
Sbjct: 703 DDGDTLAGFQDHR-KELNHI-FGGPLAYESKRKQKLTEREINAVQPDTPQ-----YLRWS 755
Query: 428 KGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGK 487
+ +++ +R+ P + PL + V + + L+DGG+ +N++ L +
Sbjct: 756 EIAIKFDRS--DHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQI 813
Query: 488 TEADLIPHDMVLSDY-EGKTGSSLGAIMLNITVGTV----ARSTLFIVVPSKANYNLLLG 542
++L P + G + + LG I L +T GT + F V + Y+ +LG
Sbjct: 814 PRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILG 873
Query: 543 REWIHGVGAVPSTLHQRISIWKLDG----------VVENVQAD-QSYYLAETGYVGKKNF 591
R + AVP H + K+ G + + V D +S +A+T +
Sbjct: 874 RPALAKFMAVP---HYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDMAQTREMASARE 930
Query: 592 EKSLATIA------PLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAMSGWHNDEEK 645
+ LA P ++ + + LDP +D K
Sbjct: 931 DIRLAAATASEGEVPATKISKSGESEAKTKKIPLDP-------------------SDPTK 971
Query: 646 DATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDV 705
A KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 972 TANN-------------KDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDR 1018
Query: 706 LVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 765
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN + PKD + +P
Sbjct: 1019 KDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLP 1078
Query: 766 VAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNA 825
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P G Y +V MPFGLKNA
Sbjct: 1079 RIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITP--FGAYCYVTMPFGLKNA 1136
Query: 826 GATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKC 885
GATYQR++ F I ++ Y+DD+VVK+ +DD + L ++F +R + +K+NP KC
Sbjct: 1137 GATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKC 1196
Query: 886 AFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSE 945
FGV +G LGF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E
Sbjct: 1197 TFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGE 1256
Query: 946 KTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTI 1005
+ F L LKK D F+W E QKAF++ K L+ P V+A P +P+ LY+SAT +
Sbjct: 1257 RGMPFFKL--LKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVV 1314
Query: 1006 GSMLAQEDED-----SKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPID 1060
++L E E+ +R I+++S VL D++TRY ++KL + + KL +Y +
Sbjct: 1315 STVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHS 1374
Query: 1061 VMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKE 1120
V V + + + +L + RI KWAL L L++ P ++K QA+ADF+ + T +E
Sbjct: 1375 VTVVTSFP-LGDILHNREANGRIAKWALELMSLDLSFKPRISIKSQALADFVAEWTECQE 1433
Query: 1121 IVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISG 1180
T ++ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ G
Sbjct: 1434 DTTVKKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHG 1493
Query: 1181 LEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSR 1240
L I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1494 LRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLR 1553
Query: 1241 VDNQEANELA------QIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKP 1294
DN+ A+ LA ++A + + + K+ + ++ + M DWR+P
Sbjct: 1554 HDNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHKDTTQAAGIHDVA---MVETDWREP 1610
Query: 1295 IVDYLQNPVGTTDR----KTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVH 1350
++ +L + D+ + R+ YV+ EL+KK+ G L +C+S ++ + +H
Sbjct: 1611 LIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1670
Query: 1351 DGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIK 1410
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1671 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1730
Query: 1411 PWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVY 1470
WPF W LD++G + ++ VAID F+KW+EA P+ +T D DF N IV+
Sbjct: 1731 SWPFAVWGLDMVGPFKKAVG-GYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVH 1788
Query: 1471 RFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKH 1530
RFG+P + TD GT F G F E +GIK+ ++ + +NGQVE AN ++ IK
Sbjct: 1789 RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 1848
Query: 1531 VGRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQ 1586
V + K +W Q L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1849 VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNF 1908
Query: 1587 EEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVV 1646
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1909 RE---ERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKI 1965
Query: 1647 LPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGKYLKTY 1700
RD+ K +P WEGPF + ++ +Y +K G + N +YL+ +
Sbjct: 1966 QTT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRRF 2015
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 704 bits (1818), Expect = 0.0
Identities = 456/1374 (33%), Positives = 714/1374 (51%), Gaps = 102/1374 (7%)
Query: 368 EDEDMLEDFDDSEGKDLNIICIVSILPAEFDRISEVTENEEDYYDEEEPDDNPLCYYVMQ 427
+D D F D K+LN I L E R ++TE E + + P Y
Sbjct: 696 DDGDTPAGFQDHR-KELNHI-FGGPLAYESKRKQKLTEREINAVQPDTPQ-----YLRWS 748
Query: 428 KGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGK 487
+ +++ +R+ P + PL + V + + L+DGG+ +N++ L +
Sbjct: 749 EIAIKFDRS--DHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQI 806
Query: 488 TEADLIPHDMVLSDY-EGKTGSSLGAIMLNITVGTV----ARSTLFIVVPSKANYNLLLG 542
++L P + G + + LG I L +T GT + F V + Y+ +LG
Sbjct: 807 PHSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILG 866
Query: 543 REWIHGVGAVPSTLHQRISIWKLDG----------VVENVQAD-QSYYLAETGYVGKKNF 591
R + AVP H + K+ G + + V D +S +A+T +
Sbjct: 867 RPALAKFMAVP---HYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDMAQTREMASARE 923
Query: 592 EKSLATIA------PLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAMSGWHNDEEK 645
+ LA P ++ + + LDP +D K
Sbjct: 924 DIRLAAATASEGEEPATKISKSGESEAKTKKIPLDP-------------------SDPAK 964
Query: 646 DATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDV 705
A KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 965 TANN-------------KDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDR 1011
Query: 706 LVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 765
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN + PKD + +P
Sbjct: 1012 KDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLP 1071
Query: 766 VAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNA 825
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P G Y +V MPFGLKNA
Sbjct: 1072 RIDQVVDSTAGRELLSFLDCYSGYHQIRLKESDCLKTSFITP--FGAYCYVTMPFGLKNA 1129
Query: 826 GATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKC 885
GATYQR++ F I ++ Y+DD+VVK+ +DD ++ L ++F +R + +K+NP KC
Sbjct: 1130 GATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKC 1189
Query: 886 AFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSE 945
FGV +G +GF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E
Sbjct: 1190 TFGVPSGKLVGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGE 1249
Query: 946 KTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTI 1005
+ F L LKK D F+W E QKAF++ K L+ P V+A P +P+ LY+SAT +
Sbjct: 1250 RGMPFFKL--LKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVV 1307
Query: 1006 GSMLAQEDED-----SKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPID 1060
++L E E+ +R I+++S VL D++TRY ++KL + + KL +Y +
Sbjct: 1308 STVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHS 1367
Query: 1061 VMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKE 1120
V V + + + +L + RI KWAL L +++ P ++K QA+ADF+ + T +E
Sbjct: 1368 VTVVTSFP-LGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQE 1426
Query: 1121 IVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISG 1180
++ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ G
Sbjct: 1427 DTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHG 1486
Query: 1181 LEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSR 1240
L I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1487 LRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLR 1546
Query: 1241 VDNQEANELA------QIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKP 1294
+N+ A+ LA ++A + + + K+ ++ + + M DWR+P
Sbjct: 1547 HNNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHKDTTQVAGTHDVA---MVETDWREP 1603
Query: 1295 IVDYLQNPVGTTDR----KTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVH 1350
++ +L + D+ + R+ YV+ EL+KK+ G L +C+S ++ + +H
Sbjct: 1604 LIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDIH 1663
Query: 1351 DGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIK 1410
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1664 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1723
Query: 1411 PWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVY 1470
WPF W LD++G + ++ VAID F+KW+EA P+ +T D DF N IV+
Sbjct: 1724 SWPFAVWGLDMVGPFKKAVG-GYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVH 1781
Query: 1471 RFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKH 1530
RFG+P + TD GT F G F E +GIK+ ++ + +NGQVE AN ++ IK
Sbjct: 1782 RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 1841
Query: 1531 VGRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQ 1586
V + K +W Q L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1842 VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNF 1901
Query: 1587 EEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVV 1646
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1902 RE---ERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKI 1958
Query: 1647 LPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGKYLKTY 1700
RD+ K +P WEGPF + ++ +Y +K G + N ++L+ +
Sbjct: 1959 QTT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 2008
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 702 bits (1812), Expect = 0.0
Identities = 402/1073 (37%), Positives = 613/1073 (56%), Gaps = 38/1073 (3%)
Query: 647 ATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDVL 706
ATTE + ++ L+ KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 931 ATTE--SALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRK 988
Query: 707 VKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPV 766
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN + PKD + +P
Sbjct: 989 DAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPR 1048
Query: 767 AEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAG 826
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P G Y +V MPFGLKNAG
Sbjct: 1049 IDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITP--FGAYCYVTMPFGLKNAG 1106
Query: 827 ATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKCA 886
ATYQR++ F I ++ Y+DD+VVK+ +DD ++ L ++F +R + +K+NP KC
Sbjct: 1107 ATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCT 1166
Query: 887 FGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSEK 946
FGV +G LGF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E+
Sbjct: 1167 FGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGER 1226
Query: 947 TKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTIG 1006
F L LKK D F+W E QKAF++ K L+ P V+A P +P+ LY+SAT +
Sbjct: 1227 GMPFFKL--LKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVS 1284
Query: 1007 SMLAQEDED-----SKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDV 1061
++L E E+ +R I+++S VL D++TRY ++KL + + KL +Y + V
Sbjct: 1285 TVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSV 1344
Query: 1062 MVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKEI 1121
V + + + +L + RI KWAL L +++ P ++K QA+ADF+ + T +E
Sbjct: 1345 TVVTSFP-LGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVAEWTECQED 1403
Query: 1122 VTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISGL 1181
I+ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ GL
Sbjct: 1404 TPVEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1463
Query: 1182 EILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSRV 1241
I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1464 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1523
Query: 1242 DNQEANELA------QIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKPI 1295
+N+ A+ LA + A + + + K+ +D + +V M DWR+P
Sbjct: 1524 NNEAADRLANFGSKREAAPSDVFVEHLYTPTVPHKDTTQDADTHDVV---MVEADWREPF 1580
Query: 1296 VDYLQNPVGTTDR----KTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVHD 1351
+ +L + D+ + R+ YV+ +EL+KK+ G L +C+S ++ + +H
Sbjct: 1581 IRFLSSQELPQDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEGRQLLKDIHS 1640
Query: 1352 GLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIKP 1411
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1641 GICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLS 1700
Query: 1412 WPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYR 1471
WPF W LD++G + ++ VAID F+KW+EA P+ +T D DF N IV+R
Sbjct: 1701 WPFAVWGLDMVGPFKKAVG-GYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVHR 1758
Query: 1472 FGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKHV 1531
FG+P + TD GT F G F E +GIK+ ++ + +NGQVE AN ++ IK V
Sbjct: 1759 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1818
Query: 1532 GRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQE 1587
+ K +W Q L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1819 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1878
Query: 1588 EIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVVL 1647
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1879 E---ERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQ 1935
Query: 1648 PVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGKYLKTY 1700
RD+ K +P WEGPF + ++ +Y +K G + N ++L+ +
Sbjct: 1936 TT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1984
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 701 bits (1808), Expect = 0.0
Identities = 458/1374 (33%), Positives = 715/1374 (51%), Gaps = 107/1374 (7%)
Query: 368 EDEDMLEDFDDSEGKDLNIICIVSILPAEFDRISEVTENEEDYYDEEEPDDNPLCYYVMQ 427
+D D F D K+LN I L E R ++TE E + + P Y
Sbjct: 699 DDGDAPAGFQDHR-KELNHI-FGGPLAYESKRKQKLTEREINAVQPDTPQ-----YLRWS 751
Query: 428 KGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGK 487
+ +++ +R+ P + PL + V + + L+DGG+ +N++ L +
Sbjct: 752 EIAIKFDRS--DHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQI 809
Query: 488 TEADLIPHDMVLSDY-EGKTGSSLGAIMLNITVGTV----ARSTLFIVVPSKANYNLLLG 542
++L P + G + + LG I L +T GT + F V + Y+ +LG
Sbjct: 810 PRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILG 869
Query: 543 REWIHGVGAVPSTLHQRISIWKLDG----------VVENVQAD-QSYYLAETGYVGKKNF 591
R + AVP H + K+ G + + V D +S +A T +
Sbjct: 870 RPALAKFMAVP---HYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDMAHTHEMASARE 926
Query: 592 EKSLATIA------PLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAMSGWHNDEEK 645
+ LA P+ + + + LDP
Sbjct: 927 DIRLAAATASEGEIPVTKTSKSGESEAKTKKIPLDP-----------------------S 963
Query: 646 DATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDV 705
D T ++ ++ L+ KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 964 DPTKTAESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDR 1023
Query: 706 LVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 765
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN + PKD + +P
Sbjct: 1024 KDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLP 1083
Query: 766 VAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNA 825
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P G Y +V MPFGLKNA
Sbjct: 1084 RIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITP--FGAYCYVTMPFGLKNA 1141
Query: 826 GATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKC 885
GATYQR++ F I ++ Y+DD+VVK+ +DD ++ L ++F +R + +K+NP KC
Sbjct: 1142 GATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKC 1201
Query: 886 AFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSE 945
FGV +G LGF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E
Sbjct: 1202 TFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGE 1261
Query: 946 KTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTI 1005
+ F L LKK D F+W E QKAF++ K L+ P V+A P +P+ LY+SAT +
Sbjct: 1262 RGMPFFKL--LKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVV 1319
Query: 1006 GSMLAQEDED-----SKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPID 1060
++LA E E+ +R I+++S VL D++TRY ++KL LY V +
Sbjct: 1320 STVLAVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKL---LYGHSVTV-------- 1368
Query: 1061 VMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKE 1120
V F DI+ + + + RI KWAL L +++ P ++K QA+ADF+ + T +E
Sbjct: 1369 VTSFPLGDILHNREA----NGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQE 1424
Query: 1121 IVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISG 1180
++ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ G
Sbjct: 1425 DTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHG 1484
Query: 1181 LEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSR 1240
L I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1485 LRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLR 1544
Query: 1241 VDNQEANELA------QIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKP 1294
+N+ A+ LA ++A + + + K+ ++ + + + DWR+P
Sbjct: 1545 HNNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHKDTTQVAGTHDVAV---VETDWREP 1601
Query: 1295 IVDYLQNPVGTTDR----KTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVH 1350
++ +L + D+ + R+ YV+ EL+KK+ G L +C+S ++ + +H
Sbjct: 1602 LIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1661
Query: 1351 DGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIK 1410
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1662 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1721
Query: 1411 PWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVY 1470
WPF W LD++G + ++ VAID F+KW+EA P+ +T D DF N IV+
Sbjct: 1722 SWPFAVWGLDMVGPFKKAVG-GYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVH 1779
Query: 1471 RFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKH 1530
RFG+P + TD GT F G F E +GIK+ ++ + +NGQVE AN ++ IK
Sbjct: 1780 RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 1839
Query: 1531 VGRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQ 1586
V + K +W Q L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1840 VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNF 1899
Query: 1587 EEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVV 1646
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1900 RE---ERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKI 1956
Query: 1647 LPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGKYLKTY 1700
RD+ K +P WEGPF + ++ +Y +K G + N ++L+ +
Sbjct: 1957 QTT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 2006
>gb|AAP53658.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37534138|ref|NP_921371.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|21671903|gb|AAM74265.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1170
Score = 700 bits (1806), Expect = 0.0
Identities = 366/763 (47%), Positives = 500/763 (64%), Gaps = 35/763 (4%)
Query: 426 MQKGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKL 485
M + +++ AIF++P HLKPL++ V+ K ++K++VDGGA +NLMP +KL
Sbjct: 424 MNQDCGQEDEAIFEKPEGTENRHLKPLYINGYVNGKTMSKMMVDGGAAVNLMPYATFRKL 483
Query: 486 GKTEADLIPHDMVLSDYEGKTGSSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREW 545
G+ LI +MVL D+ G + G + + +TVG+ T F V+ +Y+LLLGR+W
Sbjct: 484 GRNTEALIKTNMVLKDFGGNPSETRGVLNVELTVGSKTIPTTFFVINGNGSYSLLLGRDW 543
Query: 546 IHGVGAVPSTLHQRISIWKLDGVVENVQADQSYYLAETGYVGKKNFEKSLA----TIAPL 601
IH +PST+HQ + W+ D E V AD + Y + E S T+ L
Sbjct: 544 IHANCCIPSTMHQCLIQWQGDKT-EIVPADSQLKMENPCYYFEGVVEGSNVYAKDTVDDL 602
Query: 602 DTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAMSGWHNDEEKDATTEWQNEMVKLLKE 661
D Q F + D + +++ +P K+ + E++ ++++LLKE
Sbjct: 603 DDKQGQDF-------MSADELEEIDIGPGDRPRPTF-----IRKNLSPEFRTKLIELLKE 650
Query: 662 FKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKF 721
F+DCFAW+Y EMPGLSR +VE +LPIK +P +Q PRR ++L +K EI+RL
Sbjct: 651 FRDCFAWEYYEMPGLSRSIVEHRLPIKPGVRPCQQPPRRCKANMLEPVKAEIKRLY---- 706
Query: 722 IRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPVAEMMVDSTAGHEYLS 781
+ VPVIKKNGK+RVCIDFRDLN ATPKDEY MPVA+ +VD+ +G++ LS
Sbjct: 707 -----------DAVPVIKKNGKVRVCIDFRDLNKATPKDEYPMPVADQLVDAASGNKILS 755
Query: 782 LLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFI 841
+DG +GYNQIF+AEED+ K AFRCP A+G +EWVVM FGLK+AGATYQR MN I+HD I
Sbjct: 756 FVDGNAGYNQIFMAEEDIHKMAFRCPSAIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLI 815
Query: 842 ETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHK 901
++VYID++VVKS +DH+A LRK FER RKYGLKMNP KCAFGV AG FLGF+VH+
Sbjct: 816 GWLVEVYIDNVVVKSKEVEDHIADLRKVFERTRKYGLKMNPTKCAFGVSAGQFLGFLVHE 875
Query: 902 KGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSEKTKSFSPLLRLKKEDA 961
+GIE+ + AI PP +K +LQ ++GKINF+RRFI+NLS + + F+PLLRLK
Sbjct: 876 RGIEVTQRSVNAIKKIQPPENKTELQEMIGKINFVRRFISNLSGRLEPFTPLLRLKANQQ 935
Query: 962 FRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTIGSMLAQEDEDSKERAI 1021
F W AE QKA D +K YLSSP V+ PP +G P +LY+SA + +IGS+L QE E KER +
Sbjct: 936 FTWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFRLYLSAGEKSIGSVLIQELE-GKERVV 994
Query: 1022 FYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHS 1081
FYLSR L DAET+Y+ +EKLCLCLYFSC +L++Y+ + V D++++ML PIL
Sbjct: 995 FYLSRRLLDAETQYSPVEKLCLCLYFSCTRLRHYLLSNECTVICKADVVRYMLLAPILKR 1054
Query: 1082 RIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKEIVTYVGIQPWKLFFDGSSHKN 1141
R+GKW +LTE+ L Y KA+KGQAIADF+V+H + + V I PW LFFDGS +
Sbjct: 1055 RVGKWIFSLTEFDLRYESPKAIKGQAIADFIVEHR--DDSIGSVEIVPWTLFFDGSVCTH 1112
Query: 1142 GTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISGLEIL 1184
G GI + I+SP +F + IK +NN+AEYEA++ GL++L
Sbjct: 1113 GCGISLVIISPRAACFEFAYTIKPYATNNQAEYEAVLKGLQLL 1155
Score = 77.8 bits (190), Expect = 3e-12
Identities = 38/115 (33%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 1 MKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSLKDLASVKRKPAES 60
++ F SL+ +AFTWF++L S+++WA LE+ FH F+ G ++ L DL ++K++ E
Sbjct: 255 VRLFRLSLSGSAFTWFSSLPYGSINSWADLEKQFHSYFYSGVHEMKLSDLTAIKQRHDEP 314
Query: 61 IDDYLNRFRMLKSRCFT-HVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLLADR 114
+ +Y+ RFR ++++CF+ + +L LA G+ IR+K ++ +S L +
Sbjct: 315 VHEYIQRFREMRNKCFSLSLTNAQLADLAFQGMIPPIREKFSSEDFDSLSHLIQK 369
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 699 bits (1805), Expect = 0.0
Identities = 400/1074 (37%), Positives = 609/1074 (56%), Gaps = 40/1074 (3%)
Query: 647 ATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDVL 706
ATTE + ++ L+ KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 931 ATTE--SALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRK 988
Query: 707 VKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPV 766
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN + PKD + +P
Sbjct: 989 DAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPR 1048
Query: 767 AEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAG 826
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P G Y +V MPFGLKNAG
Sbjct: 1049 IDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITP--FGAYCYVTMPFGLKNAG 1106
Query: 827 ATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKCA 886
ATYQR++ F I ++ Y+DD+VVK+ +DD ++ L ++F +R + +K+NP KC
Sbjct: 1107 ATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCT 1166
Query: 887 FGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSEK 946
FGV +G LGF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E+
Sbjct: 1167 FGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGER 1226
Query: 947 TKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTIG 1006
F L LKK D F+W E QKAF++ K L+ P V+A P +P+ LY+SAT +
Sbjct: 1227 GMPFFKL--LKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVS 1284
Query: 1007 SMLAQEDED-----SKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDV 1061
++L E E+ +R I+++S VL D++ RY ++KL + + KL +Y + V
Sbjct: 1285 TVLVVEREEEGHVQKVQRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYFQGHSV 1344
Query: 1062 MVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKEI 1121
V + + + +L + RI KWAL L +++ P ++K QA+ADF+ + T +E
Sbjct: 1345 TVVTSFP-LGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVAEWTECQED 1403
Query: 1122 VTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISGL 1181
I+ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ GL
Sbjct: 1404 TPVEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1463
Query: 1182 EILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSRV 1241
I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1464 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1523
Query: 1242 DNQEANELAQIA-------SGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKP 1294
+N+ A+ LA S V+ + + NI +++ DWR+P
Sbjct: 1524 NNEAADRLANFGSKRETAPSDVFVEHLYTPTVPHKDTTQDADTRNIAMVE----ADWREP 1579
Query: 1295 IVDYLQNPVGTTDR----KTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVH 1350
+ +L + D+ + R+ YV+ +EL+KK+ G L +C+S ++ + +H
Sbjct: 1580 FIRFLTSQELPQDKDEAERISRRSKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIH 1639
Query: 1351 DGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIK 1410
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1640 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1699
Query: 1411 PWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVY 1470
WPF W LD++G + ++ VAID F+KW+EA P+ +T D DF N IV+
Sbjct: 1700 SWPFAVWGLDMVGPFKKAVG-GYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVH 1757
Query: 1471 RFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKH 1530
RFG+P + TD GT F G F E +GIK+ ++ + +NGQVE AN ++ IK
Sbjct: 1758 RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 1817
Query: 1531 VGRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQ 1586
V + K +W Q L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1818 VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNF 1877
Query: 1587 EEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVV 1646
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1878 RE---ERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKI 1934
Query: 1647 LPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGKYLKTY 1700
RD+ K +P WEGPF + ++ +Y +K G + N ++L+ +
Sbjct: 1935 QTT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1984
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 699 bits (1805), Expect = 0.0
Identities = 453/1374 (32%), Positives = 718/1374 (51%), Gaps = 102/1374 (7%)
Query: 368 EDEDMLEDFDDSEGKDLNIICIVSILPAEFDRISEVTENEEDYYDEEEPDDNPLCYYVMQ 427
+D D F D K+LN I L E R ++TE E + + P Y
Sbjct: 442 DDGDTPAGFQDHR-KELNHI-FGGPLAYESKRKQKLTEREINAVQPDTPQ-----YLRWS 494
Query: 428 KGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGK 487
+ +++ +R+ P + PL + V + + L+DGG+ +N++ L +
Sbjct: 495 EIAIKFDRS--DHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQI 552
Query: 488 TEADLIPHDMVLSDY-EGKTGSSLGAIMLNITVGTV----ARSTLFIVVPSKANYNLLLG 542
++L P + G + + LG I L +T GT + F V + Y+ +LG
Sbjct: 553 PRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILG 612
Query: 543 REWIHGVGAVPSTLHQRISIWKLDG----------VVENVQAD-QSYYLAETGYVG--KK 589
R + AVP H + K+ G + + V D +S +A+T + ++
Sbjct: 613 RPALAKFMAVP---HYTYMMMKMPGPRRVLSLRSDIKQAVTCDKESCDMAQTREMASARE 669
Query: 590 NFEKSLATIA----PLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAMSGWHNDEEK 645
+ ++AT + P ++ + + LDP +D K
Sbjct: 670 DIRLAVATASEGEVPATKISKSGESEAKTKKIPLDP-------------------SDSTK 710
Query: 646 DATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDV 705
A KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 711 TANN-------------KDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFVQDR 757
Query: 706 LVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 765
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN PKD + +P
Sbjct: 758 KDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLP 817
Query: 766 VAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNA 825
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P +G Y +V MPFGLKNA
Sbjct: 818 RIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITP--IGAYCYVTMPFGLKNA 875
Query: 826 GATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKC 885
GATYQR++ F I ++ Y+DD+V+K+ +DD ++ L ++F +R + +K+NP KC
Sbjct: 876 GATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQKDDLISDLEETFASIRAFRMKLNPEKC 935
Query: 886 AFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSE 945
FGV +G LGF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E
Sbjct: 936 TFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGE 995
Query: 946 KTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTI 1005
+ F L LKK D F+W E QKAF++ K +L+ P V+A P +P+ LY+SAT +
Sbjct: 996 RGMPFFKL--LKKTDDFQWGPEAQKAFEDFKKFLTEPPVLASPHPQEPLLLYVSATSQVV 1053
Query: 1006 GSMLAQEDED-----SKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPID 1060
++L E E+ +R I+++S VL D++TRY ++KL + + KL +Y +
Sbjct: 1054 STVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHS 1113
Query: 1061 VMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKE 1120
V V + + + +L + RI KWAL L +++ P ++K QA+ADF+ + T +E
Sbjct: 1114 VTVVTSFP-LGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQE 1172
Query: 1121 IVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISG 1180
++ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ G
Sbjct: 1173 DTPAEKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHG 1232
Query: 1181 LEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSR 1240
L I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1233 LRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLR 1292
Query: 1241 VDNQEANELA------QIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKP 1294
+N+ A+ LA ++A + + + K+ ++ + + + DWR+P
Sbjct: 1293 HNNEAADRLANFGSKREVAPSDVFVEHLYTPTVPHKDTTQIAGTHDVA---LVEADWREP 1349
Query: 1295 IVDYLQNPVGTTDR----KTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVH 1350
+ +L + D+ + R+ YV+ EL+KK+ G L +C+S ++ + +H
Sbjct: 1350 FIRFLTSQELPQDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1409
Query: 1351 DGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIK 1410
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1410 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1469
Query: 1411 PWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVY 1470
WPF W LD++G + ++ VAID F+KW+EA P+ +T D DF N IV+
Sbjct: 1470 SWPFAVWGLDMVGPFKKAVG-GYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVH 1527
Query: 1471 RFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKH 1530
RFG+P + TD G F G F E +GIK+ ++ + +NGQVE AN ++ IK
Sbjct: 1528 RFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 1587
Query: 1531 VGRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQ 1586
V + K +W + L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1588 VFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNF 1647
Query: 1587 EEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVV 1646
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1648 RE---ERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKI 1704
Query: 1647 LPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGKYLKTY 1700
RD+ K +P WEGPF + ++ +Y +K G + N ++L+ +
Sbjct: 1705 QTT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1754
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 699 bits (1804), Expect = 0.0
Identities = 455/1374 (33%), Positives = 711/1374 (51%), Gaps = 102/1374 (7%)
Query: 368 EDEDMLEDFDDSEGKDLNIICIVSILPAEFDRISEVTENEEDYYDEEEPDDNPLCYYVMQ 427
+D D F D K+LN I L E R ++TE E + + P Y
Sbjct: 636 DDGDTPAGFQDHR-KELNHI-FGGPLAYESKRKQKLTEREINAVQPDTPQ-----YLRWS 688
Query: 428 KGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGK 487
+ +++ +R+ P + PL + V + + L+DGG+ +N++ L +
Sbjct: 689 EIAIKFDRS--DHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQI 746
Query: 488 TEADLIPHDMVLSDY-EGKTGSSLGAIMLNITVGTV----ARSTLFIVVPSKANYNLLLG 542
++L P + G + + LG I L +T GT + F V + Y+ +LG
Sbjct: 747 PRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILG 806
Query: 543 REWIHGVGAVPSTLHQRISIWKLDG----------VVENVQAD-QSYYLAETGYVGKKNF 591
R + AVP H + K+ G + + V D +S +A+T +
Sbjct: 807 RPALAKFMAVP---HYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDMAQTREMASARE 863
Query: 592 EKSLATIA------PLDTVANQYFNPYSEYSVMLDPIRGLNLNEAYKPDAMSGWHNDEEK 645
+ LA P + + + LDP +D K
Sbjct: 864 DIRLAAATASEGEIPATKTSKSGESEAKTKKIPLDP-------------------SDPTK 904
Query: 646 DATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDV 705
A KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 905 TANN-------------KDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDR 951
Query: 706 LVKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMP 765
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN + PKD + +P
Sbjct: 952 KDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLP 1011
Query: 766 VAEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNA 825
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P G Y +V MPFGLKNA
Sbjct: 1012 RIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITP--FGAYCYVTMPFGLKNA 1069
Query: 826 GATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKC 885
GATYQR++ F I ++ Y+DD+VVK+ +DD ++ L ++F +R + +K+NP KC
Sbjct: 1070 GATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKC 1129
Query: 886 AFGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSE 945
FGV +G LGF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E
Sbjct: 1130 TFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGE 1189
Query: 946 KTKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTI 1005
+ F LL KK D F+W E QKAF++ K L+ P ++A P +P+ LY+SAT +
Sbjct: 1190 RGMPFFKLL--KKTDNFQWGPEAQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVV 1247
Query: 1006 GSMLAQEDEDSK-----ERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPID 1060
++L E E+ +R I+++S VL D++TRY ++KL + + KL +Y +
Sbjct: 1248 STVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHS 1307
Query: 1061 VMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKE 1120
V V + + + +L + RI KWAL L +++ P ++K QA+ADF+ + T +E
Sbjct: 1308 VTVVTSFPL-GDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQE 1366
Query: 1121 IVTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISG 1180
++ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ G
Sbjct: 1367 DTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHG 1426
Query: 1181 LEILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSR 1240
L I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1427 LRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLR 1486
Query: 1241 VDNQEANELA------QIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKP 1294
+N+ A+ LA ++A + + + K+ +D + + + DWR+P
Sbjct: 1487 HNNEAADRLANFGSKREMAPSDVFVEHLYTPTVPHKDTTQDADTHDVAL---VEADWREP 1543
Query: 1295 IVDYLQNPVGTTDR----KTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVH 1350
+ +L + D+ + R+ Y + EL+KK+ G L +C+S ++ + +H
Sbjct: 1544 FIRFLTSQELPQDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 1603
Query: 1351 DGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIK 1410
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1604 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 1663
Query: 1411 PWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVY 1470
WPF W LD++G + ++ VAID F+KW+EA P+ +T D DF N IV+
Sbjct: 1664 SWPFAVWGLDMVGPFKKAVG-GYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN-IVH 1721
Query: 1471 RFGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKH 1530
RFG+P + TD GT F G F E +GIK+ ++ + +NGQVE AN ++ IK
Sbjct: 1722 RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 1781
Query: 1531 VGRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQ 1586
V + K +W Q L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1782 VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNF 1841
Query: 1587 EEIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVV 1646
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1842 RE---ERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKI 1898
Query: 1647 LPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGGRNRQMTVNGKYLKTY 1700
RD+ K +P WEGPF + ++ +Y +K G + N ++L+ +
Sbjct: 1899 QTT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1948
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 696 bits (1795), Expect = 0.0
Identities = 396/1058 (37%), Positives = 602/1058 (56%), Gaps = 38/1058 (3%)
Query: 647 ATTEWQNEMVKLLKEFKDCFAWDYDEMPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDVL 706
ATTE + ++ L+ KD FAW +MPG+ R+++E L +KED KP+KQ RRF D
Sbjct: 936 ATTE--SALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRK 993
Query: 707 VKIKEEIERLLKCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPV 766
IKEE+ +LL FI+ + DWLAN V V KK G+ R+C+D+ DLN + PKD + +P
Sbjct: 994 DAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPR 1053
Query: 767 AEMMVDSTAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAG 826
+ +VDSTAG E LS LD YSGY+QI + E D KT+F P G Y +V MPFGLKNAG
Sbjct: 1054 IDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITP--FGAYCYVTMPFGLKNAG 1111
Query: 827 ATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKCA 886
ATYQR++ F I ++ Y+DD+VVK+ +DD + L ++F +R + +K+NP KC
Sbjct: 1112 ATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCT 1171
Query: 887 FGVIAGDFLGFVVHKKGIEINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFIANLSEK 946
FGV +G LGF+V +GI+ N K AIL+ PP+++K +Q L G + L RF++ L E+
Sbjct: 1172 FGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGER 1231
Query: 947 TKSFSPLLRLKKEDAFRWEAEHQKAFDELKVYLSSPHVMAPPIRGKPMKLYISATDGTIG 1006
F L LKK D F+W E QKAF++ K L+ P V+A P +P+ LY+SAT +
Sbjct: 1232 GMPFFKL--LKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVS 1289
Query: 1007 SMLAQEDED-----SKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDV 1061
++L E E+ +R I+++S VL D++TRY ++KL + + KL +Y + V
Sbjct: 1290 TVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSV 1349
Query: 1062 MVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAIADFLVDHTLPKEI 1121
V + + + +L + RI KWAL L +++ P ++K QA+ADF+ + T +E
Sbjct: 1350 TVVTSFP-LGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVAEWTECQED 1408
Query: 1122 VTYVGIQPWKLFFDGSSHKNGTGIGMFIVSPGGIPTKFKFRIKKNCSNNEAEYEALISGL 1181
I+ W + FDGS +GTG G+ ++SP G + I + S+N AEYEAL+ GL
Sbjct: 1409 TPVEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGL 1468
Query: 1182 EILIAFGAKNVVIKGDSELVIKQLTKEYKCVSENLARYYTKANNLLAKFDEARLSHVSRV 1241
I I+ G K ++++GDS+LV+ Q+ KE+ C+ +N+ Y + L KFD LSHV R
Sbjct: 1469 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1528
Query: 1242 DNQEANELA------QIASGYMVDKCRLKELIEVKEKLNLSDLNILVIDNMAPNDWRKPI 1295
+N+ A+ LA + A + + + K+ ++D + + M DWR+P+
Sbjct: 1529 NNEAADRLANFGSKREAAPSDVFVEHLYSPTVPHKDATQVADTHDIA---MVEADWREPL 1585
Query: 1296 VDYLQN----PVGTTDRKTKYRAMSYVIMGNELFKKNVDGTLLKCLSEDDAFIAISAVHD 1351
+ +L + + R+ YV+ EL+KK+ G L +C+S ++ + +H
Sbjct: 1586 IRFLTSQELPQYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHS 1645
Query: 1352 GLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYDKGCQDFQRHAGIQHVPASELHSIIKP 1411
G+CG H A + +RQG +WPT + D + + C+ Q A H+PA EL +I
Sbjct: 1646 GICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLS 1705
Query: 1412 WPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYR 1471
WPF W LD++G + ++ +AID F+KW+EA P+ +T D DF N IV+R
Sbjct: 1706 WPFAVWGLDMVGPFKKAVG-GYTHLFMAIDKFSKWIEAKPVVTITADNARDFFIN-IVHR 1763
Query: 1472 FGLPESLTTDQGTVFVGQKVASFAESWGIKLLNSTPYYAQANGQVEAANKTLISLIKKHV 1531
FG+P + TD GT F G F E +GIK+ ++ + +NGQVE AN ++ IK V
Sbjct: 1764 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQRIKARV 1823
Query: 1532 GRKPK----RWHQTLGQVLWAYRNSPKEATGATPFRLAYGQEAVLPAEVYLQSCRIQRQE 1587
+ K +W L VLW+ R +P ATG +PF L YG EA+LP+EV +S R +
Sbjct: 1824 FDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFR 1883
Query: 1588 EIPSEDYWNMMLDELVNLDEERLSALDILTRQKDRVAKAYNKKVRAKSFMPGDYVWKVVL 1647
E E Y +D+L L+E R +AL R + + +N+ VR+++F+ GD V + +
Sbjct: 1884 E---ERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQ 1940
Query: 1648 PVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKELGG 1685
RD+ K +P WEGPF + ++ +Y +K G
Sbjct: 1941 TT--RDRH--KLSPLWEGPFIISEVTRPGSYRLKREDG 1974
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 694 bits (1792), Expect = 0.0
Identities = 386/1037 (37%), Positives = 598/1037 (57%), Gaps = 21/1037 (2%)
Query: 673 MPGLSRDLVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLKCKFIRTARYVDWLA 732
M G+ + +L + +PV+Q RRFHPD I+ EI++LL+ FIR Y DWLA
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 733 NVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPVAEMMVDSTAGHEYLSLLDGYSGYNQI 792
NVV V KK GK RVC+D+ +LN A PKD + +P + +VDST+G LS LD +SGY+QI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 793 FIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDI 852
++ +D K AF P L Y+ VMPFGLKNAGATYQR+M IF I ++VYIDDI
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYK--VMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDI 178
Query: 853 VVKSPSRDDHLAHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAK 912
VVKS +R+ H+ HL++ F +R+YG+K+NP KCAFGV A FLGF+V ++GIE++ ++ K
Sbjct: 179 VVKSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVK 238
Query: 913 AILDTSPPTSKKQLQSLLGKINFLRRFIANLSEKTKSFSPLLRLKKEDAFRWEAEHQKAF 972
A+++T PP +KK+LQ L GK+ L RFIA ++ + F L ++K W Q A
Sbjct: 239 AVMETPPPRNKKELQRLTGKLVALGRFIARFIDELRPF--FLAIRKAGTHGWTDNCQNAL 296
Query: 973 DELKVYLSSPHVMAPPIRGKPMKLYISATDGTIGSMLAQEDEDSKERAIFYLSRVLNDAE 1032
+ +K YL P +++ PI + + +Y++ ++ I ++L + +++ I+Y+SR L D E
Sbjct: 297 ERIKHYLMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRCPSPKEQKPIYYVSRALADVE 356
Query: 1033 TRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTE 1092
TRY+ +E + L L + KL+ Y + V+V + ++++L KP L R+ +WA+ L+E
Sbjct: 357 TRYSKMELISLALRSAAQKLRPYFQAHPVIVLTDQP-LRNILHKPDLTGRMLQWAIELSE 415
Query: 1093 YSLTYAPLKAVKGQAIADFLVDHT-LPKEIVTYVGIQPWKLFFDGSSHKNGTGIGMFIVS 1151
+ + + P ++KGQ +ADF+++++ P + + W L DG+S +G+G+G+ + S
Sbjct: 416 FGIEFQPRLSMKGQVMADFVLEYSRKPGQHEGSRKKEWWTLRVDGASRSSGSGVGLLLQS 475
Query: 1152 PGGIPTKFKFRIKKNCSNNEAEYEALISGLEILIAFGAKNVVIKGDSELVIKQLTKEYKC 1211
P G + R+ + SNNEAEYEA++SGL++ +A + I DS+LV+K + +EY+
Sbjct: 476 PTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVSKLRIFSDSQLVVKHVQEEYEA 535
Query: 1212 VSENLARYYTKANNLLAKFDEARLSHVSRVDNQEANELAQIASGYMVDKCRLKELIEVKE 1271
+ARY K N L +F E + + R DN+ A+ LA IA+ + + L I V+
Sbjct: 536 KDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALAGIAASLSIKEAILLP-IHVQT 594
Query: 1272 KLNLSDLNILVIDNMAPND---WRKPIVDYLQNPVGTTD----RKTKYRAMSYVIMGNEL 1324
++S+++I D W I +Y++ D K + +A + ++G L
Sbjct: 595 NPSVSEISICSTTEAPQADDQEWMNDITEYIRTGTLPGDPKQAHKVRVQAARFTLIGGHL 654
Query: 1325 FKKNVDGTLLKCLSEDDAFIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEY 1384
+K++ G L+CL +A ++ +H+G+ G H G + QG YWPT+ K+ Y
Sbjct: 655 YKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEAAAY 714
Query: 1385 DKGCQDFQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFT 1444
K C QR+A I H+P++ L SI PWPF W +D++ + P + Q K+++VA DYF+
Sbjct: 715 VKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQWGMDIVRPL-PTAPAQKKFLLVATDYFS 773
Query: 1445 KWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFAESWGIKLLN 1504
KWVEA + V F+ +I+ RFG+P+++ D G F +F I+
Sbjct: 774 KWVEAEAYASTKDKDVTKFVWKNIICRFGIPQTIIADNGPQFDSIAFRNFCSELNIRNSY 833
Query: 1505 STPYYAQANGQVEAANKTLISLIKKHVGRKPKRWHQTLGQVLWAYRNSPKEATGATPFRL 1564
STP Y Q+NGQ EA NKTLI+ +KK + + +W + L VLWAYR +P TG TPF L
Sbjct: 834 STPRYPQSNGQAEATNKTLITALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFAL 893
Query: 1565 AYGQEAVLPAEVYLQSCRIQRQEEIPSEDYWNMMLDELVN-LDEERLSALDILTRQKDRV 1623
AYG +AV+P E+ L + ++ + NM L ++ DE R SA + + R
Sbjct: 894 AYGMDAVIPIEIGLPTIWTNAAKQSDA----NMQLGRNLDWTDEVRESASIRMADYQQRA 949
Query: 1624 AKAYNKKVRAKSFMPGDYVWKVVLPVDKRDKRYGKWAPNWEGPFTVEKILLNNAYSIKEL 1683
+ YN+KVR +S G V + + + GK+ NWEGP+ V K N AY +++L
Sbjct: 950 SAHYNRKVRPRSLKNGTLVLRKFFE-NTTEVGAGKFQANWEGPYIVSKASDNGAYHLQKL 1008
Query: 1684 GGRNRQMTVNGKYLKTY 1700
G N LK Y
Sbjct: 1009 DGTPLLRPWNVSNLKQY 1025
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,030,093,009
Number of Sequences: 2540612
Number of extensions: 136531104
Number of successful extensions: 436691
Number of sequences better than 10.0: 35112
Number of HSP's better than 10.0 without gapping: 2903
Number of HSP's successfully gapped in prelim test: 32213
Number of HSP's that attempted gapping in prelim test: 387044
Number of HSP's gapped (non-prelim): 45239
length of query: 1710
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1568
effective length of database: 502,593,490
effective search space: 788066592320
effective search space used: 788066592320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)
Lotus: description of TM0026.5