BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.9
(388 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 206 1e-51
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 194 4e-48
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 191 4e-47
ref|NP_909558.1| putative reverse transcriptase [Oryza sativa] g... 186 1e-45
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 183 7e-45
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 181 3e-44
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 180 6e-44
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 180 7e-44
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 179 1e-43
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 179 2e-43
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 175 2e-42
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 175 2e-42
ref|XP_463188.1| putative reverse transcriptase [Oryza sativa (j... 174 4e-42
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 173 7e-42
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 172 1e-41
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 171 3e-41
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 171 3e-41
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 170 8e-41
ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultiv... 169 2e-40
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 165 2e-39
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 206 bits (523), Expect = 1e-51
Identities = 117/300 (39%), Positives = 166/300 (55%), Gaps = 10/300 (3%)
Query: 58 LEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQ 117
L ++ + +KYLGLP +G+S+T+IF+++KERIW+R++GWKEK LSRAG+EILIK++AQ
Sbjct: 940 LNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQ 999
Query: 118 AIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFF 177
IP++ M CF L +C I +MIA ++W +HW W L K GGLGFR
Sbjct: 1000 VIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDI 1059
Query: 178 RAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKI 234
F A++AK R+ P+SL RV + Y P K+ TW SI K +
Sbjct: 1060 YIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVL 1119
Query: 235 EGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NGRWNLE 292
+ G+ WRVGDG +IN+ D W+P G S M A L + KV +L+D G W+ +
Sbjct: 1120 Q---NGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGANL-VTKVEELIDPYTGTWDED 1175
Query: 293 LLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREEHRPLP 352
LL + F + I +IP+ + D L W+ G + KS YK R+M R P
Sbjct: 1176 LLSQTFWEEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCP 1234
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 194 bits (493), Expect = 4e-48
Identities = 108/293 (36%), Positives = 159/293 (53%), Gaps = 8/293 (2%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
++ +L + + YLGLP +G SKT++F+FV++R+ R+ GW K LS+ G+E++I
Sbjct: 518 DIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMI 577
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
KS+A +P Y+MSCF LP +I + + +A F+W + RG+HW W LC +K DGGL
Sbjct: 578 KSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGL 637
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGY---ITWSSILK 229
GFR F AL+AK R+ P+SL +VFK Y S+ L + K Y W S++
Sbjct: 638 GFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMIS 697
Query: 230 AGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NG 287
A + GL RVG G I++ D W+P + KV L+D +
Sbjct: 698 ARSLVY---KGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSN 754
Query: 288 RWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIR 340
WN++LL+E+F + I A+P+ N D L W+ T G Y KSGY R
Sbjct: 755 FWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTAR 807
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 191 bits (484), Expect = 4e-47
Identities = 114/303 (37%), Positives = 163/303 (53%), Gaps = 7/303 (2%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
+L+QLL + + + F +YLGLP +G++KT F+F+ + + +++ W K LS AG+E+LI
Sbjct: 189 QLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLI 248
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
KSI AIP+Y MSCF+LP + I + F+W + + W W+ L K+ GGL
Sbjct: 249 KSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGL 308
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAK---KGYITWSSILK 229
R + F AL+AK RI P SLM RVFK Y P +L AK + W SIL
Sbjct: 309 AIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILH 368
Query: 230 AGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLDNGRW 289
I GL++ G+G I L +D WLP + + KVSDLL GRW
Sbjct: 369 GTKLI---SRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLLIEGRW 425
Query: 290 NLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREEHR 349
N +LL ++ + + I AI S G DA+ W T +G Y KSGY +R + +++H
Sbjct: 426 NEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLS-QQQHA 484
Query: 350 PLP 352
LP
Sbjct: 485 SLP 487
>ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
gi|14018103|gb|AAK52166.1| putative reverse
transcriptase [Oryza sativa]
Length = 1185
Score = 186 bits (471), Expect = 1e-45
Identities = 108/275 (39%), Positives = 154/275 (55%), Gaps = 11/275 (4%)
Query: 67 DKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSC 126
DKYLGLP +IG K+ F + +R+ R+ G KEK LS G+E+LIKSIAQAIP + MS
Sbjct: 566 DKYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSV 625
Query: 127 FILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVA 186
F +P IC I IA F+WG D R +HW W +C K+ GGLGFR F A++A
Sbjct: 626 FRIPKKICDCISEAIARFWWGDDENHRRIHWKAWWRMCIPKQRGGLGFRDLYCFNRAMLA 685
Query: 187 KN**RIYMFPESLMGRVFKVVYSPSSSILMA--KKG-YITWSSILKAGGKIEGGGGGLRW 243
K R P+SL RV + Y P +IL A KKG W SIL + G W
Sbjct: 686 KQIWRFLCDPDSLCARVMRCKYYPDGNILRARPKKGSSYAWQSILSGSECFK----GYIW 741
Query: 244 RVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NGRWNLELLEEVFSSS 301
R+GDG Q+N+ +D +P S+ + + + KV +L++ +G W+ +L++ +F
Sbjct: 742 RIGDGSQVNIWEDSLIPSSSNGKVLTPRGRNI-ITKVEELINPVSGGWDEDLIDTLFWPI 800
Query: 302 PMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
+IL IP+S G D + W+ T +G++ +S Y
Sbjct: 801 DANRILQIPIS-AGREDFVAWHHTRSGIFSVRSAY 834
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 183 bits (465), Expect = 7e-45
Identities = 109/305 (35%), Positives = 160/305 (51%), Gaps = 17/305 (5%)
Query: 45 KCVENCFHELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLS 104
+C + + L+V D YLG+PT IG + T F F+ ERIWKR+ GW ++ LS
Sbjct: 741 RCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLS 800
Query: 105 RAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLC 164
RAG E ++K++AQAIP+Y+MSCF +P SIC + IA +WG + ++ +HW W+ L
Sbjct: 801 RAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLS 860
Query: 165 KNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMA---KKGY 221
K GG+GFR F F +A++ + R+ P+SL RV K Y P+SS A K
Sbjct: 861 TPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPS 920
Query: 222 ITWSSILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRL---- 277
TW S+L + G+RW VGDG I + D W+P + + + L
Sbjct: 921 FTWRSLLFGRELL---AKGVRWGVGDGKTIKIFSDNWIPG-----FRPQLVTTLSPFPTD 972
Query: 278 EKVSDLL--DNGRWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSG 335
VS L+ D W+ +L+ +F ++IL IP+S G+ D W G+Y +S
Sbjct: 973 ATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSA 1032
Query: 336 YKFIR 340
Y R
Sbjct: 1033 YNLAR 1037
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 181 bits (460), Expect = 3e-44
Identities = 104/301 (34%), Positives = 161/301 (52%), Gaps = 13/301 (4%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
+ +L+V++ DKYLGLPT G+ K + ++ +R+ KRL W EK LS G+E+LIK
Sbjct: 5 IKSVLQVQQNTFKDKYLGLPTPSGRMKAGKYQYLMDRLMKRLSDWAEKFLSMGGKEVLIK 64
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
S+ QA+P+Y+M+ F LP C D +MI F+WG + RR HWT W L K K GG+G
Sbjct: 65 SVIQALPTYVMNVFKLPSGFCEDYMKMIRKFWWGEEKNRRKTHWTSWQQLIKPKSKGGIG 124
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSIL---MAKKGYITWSSILKA 230
F+ + F +AL+A+ R+ F +SL ++ K Y P+ ++ W I
Sbjct: 125 FKDLKIFNQALLARQAWRLIQFLDSLCAKLMKARYFPNGHLIDTVFPTDSSEVWRGICHG 184
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLL--DNGR 288
+E G+ WR+G G Q+++ +D W+P L + L+ V+DL+ +N
Sbjct: 185 ---LELLKKGIIWRIGKGDQLHIWRDNWIPRDHQLRVTGKR-TRTCLKWVADLVSPNNQE 240
Query: 289 WNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREEH 348
W+ L+ ++F + +IL I L D L W+ GV+ +S YK + L EEH
Sbjct: 241 WDEGLIRQIFYPPYVDEILKIKLPESPTDDFLAWHPERLGVFTVRSAYK----LGLAEEH 296
Query: 349 R 349
R
Sbjct: 297 R 297
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 180 bits (457), Expect = 6e-44
Identities = 100/273 (36%), Positives = 149/273 (53%), Gaps = 8/273 (2%)
Query: 53 ELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILI 112
E+ L + + YLGLP +G SKT+IF+FV++R+ R+ GW K LS+ G+E++I
Sbjct: 584 EIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMI 643
Query: 113 KSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGL 172
KS+ +P+Y+MSCF LP +I + + +A F+W D RG+HW W LC +K DGGL
Sbjct: 644 KSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGGL 703
Query: 173 GFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGY---ITWSSILK 229
GFR F AL+AK R+ P+SL +VFK Y S+ L K Y W SI+
Sbjct: 704 GFRSVNDFNSALLAKQLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYSPSYGWRSIIS 763
Query: 230 AGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NG 287
A ++ GL RVG G I++ +D W+P + KV++L+D +
Sbjct: 764 ARSLVK---KGLINRVGSGASISVWEDPWIPAQFPRPAISNGSVIDPSLKVNNLIDSRSN 820
Query: 288 RWNLELLEEVFSSSPMQKILAIPLSNQGNTDAL 320
WN++ L E+F + I A+ L + D+L
Sbjct: 821 FWNIDFLNEIFVPEDVLLISAMHLGSSTKEDSL 853
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 180 bits (456), Expect = 7e-44
Identities = 104/299 (34%), Positives = 166/299 (54%), Gaps = 10/299 (3%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
++++L+V+ + D+YLG PT G+ F ++ +IWKR+ W E LS G+E+LIK
Sbjct: 1469 ISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIK 1528
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
++ QAIP Y+M F LP+S+ D+ ++ F+W +R HW W +L K K GGLG
Sbjct: 1529 AVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLG 1588
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWSSILKAGGK 233
FR +R F +AL+A+ R+ +P+SL RV K Y P S++ G S+ A
Sbjct: 1589 FRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFG----SNSSPAWRS 1644
Query: 234 IEGG----GGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLL-DNGR 288
IE G G+ WRVG+G I + +D WLP S + A RL+ VSDL+ ++G
Sbjct: 1645 IEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPI-TGKANCRLKWVSDLITEDGS 1703
Query: 289 WNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREE 347
W++ + + F + + IL I +S++ D + W+ NG++ +S Y+ ++ EE
Sbjct: 1704 WDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEE 1762
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 179 bits (455), Expect = 1e-43
Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 8/297 (2%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
+T L++ + DKYLGLPT G+ F ++ERIWK++ W E LS G+E+LIK
Sbjct: 1104 ITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLIK 1163
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
++ QAIP Y+M F LP+S+C D+ + F+WG + +R HW W +L K+K GGLG
Sbjct: 1164 AVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLG 1223
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYIT---WSSILKA 230
F+ R F +AL+A+ R+ P+SL RV K Y P+ SI+ G W +I
Sbjct: 1224 FKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHG 1283
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDL-LDNGRW 289
+E G+ WR+G+G + + QD WLP S + R++ V+DL LDNG W
Sbjct: 1284 ---LELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPK-NNCRIKWVADLMLDNGMW 1339
Query: 290 NLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLRE 346
+ + ++F ++ IL + S++ D + W+ G + ++ Y+ + E
Sbjct: 1340 DANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLAENWAKEE 1396
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 179 bits (453), Expect = 2e-43
Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 11/298 (3%)
Query: 46 CVENCFHELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSR 105
C + E+ L+V +KYLGLPT G+ K + F + +++ KR+ W EK +S
Sbjct: 639 CPQERQDEIKSALQVHSSTFEEKYLGLPTPDGRMKAEQFQPINDKLSKRMSDWNEKYMSS 698
Query: 106 AGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCK 165
+E+LIKS+AQA+P+YIM F + D C D RM+ F+WG D R +HW W +
Sbjct: 699 GAKEVLIKSVAQALPTYIMGVFKMTDKFCDDYTRMVRNFWWGHDNGERKVHWIAWEKILY 758
Query: 166 NKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWS 225
K GGLGFR + F +AL+A+ R+ P+SL RVFK Y P+ +++ + T S
Sbjct: 759 PKSHGGLGFRDMKCFNQALLARQAWRLLTSPDSLCARVFKAKYYPNGNLV--DTAFPTVS 816
Query: 226 SILKAGGKIEGG----GGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVS 281
S + G I+ G G WRVG+G I + + KW+P G + + E RL V+
Sbjct: 817 SSVWKG--IQHGLDLLKQGTIWRVGNGHNIKIWRHKWVPHGEHINVL-EKKGRNRLIYVN 873
Query: 282 DLL--DNGRWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYK 337
+L+ +N WN L+ V ++L I L N D W+ +G++ KS YK
Sbjct: 874 ELINEENRCWNETLVRHVLKEEDANEVLKIRLPNHQMDDFPAWHHEKSGLFTVKSAYK 931
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 175 bits (444), Expect = 2e-42
Identities = 101/287 (35%), Positives = 157/287 (54%), Gaps = 5/287 (1%)
Query: 52 HELTQLLEVKEVKSF-DKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREI 110
+++ Q L++ SF DKYLG PT G+ F ++ER+WKR+ W EK LS G+EI
Sbjct: 1347 NQIKQTLQISN--SFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEI 1404
Query: 111 LIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDG 170
LIK++ QA+P Y+M F LP+S+C ++ +++ F+WG + R HW W L K G
Sbjct: 1405 LIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRRTHWKSWDCLIAQKLKG 1464
Query: 171 GLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWSSILKA 230
G+GFR FR F +AL+A+ R+ P+SL R+ K +Y P+ S++ G
Sbjct: 1465 GMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAI 1524
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD-NGRW 289
+E G+ WR+G+G + L +D W+P S + A RL VSDL+D +G W
Sbjct: 1525 EYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPI-SAKRNCRLRWVSDLIDQSGSW 1583
Query: 290 NLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
+ + + + F + IL I LS++ D + W+ G + +S Y
Sbjct: 1584 DTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAY 1630
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 175 bits (444), Expect = 2e-42
Identities = 101/287 (35%), Positives = 157/287 (54%), Gaps = 5/287 (1%)
Query: 52 HELTQLLEVKEVKSF-DKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREI 110
+++ Q L++ SF DKYLG PT G+ F ++ER+WKR+ W EK LS G+EI
Sbjct: 1304 NQIKQTLQISN--SFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEI 1361
Query: 111 LIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDG 170
LIK++ QA+P Y+M F LP+S+C ++ +++ F+WG + R HW W L K G
Sbjct: 1362 LIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRRTHWKSWDCLIAQKLKG 1421
Query: 171 GLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWSSILKA 230
G+GFR FR F +AL+A+ R+ P+SL R+ K +Y P+ S++ G
Sbjct: 1422 GMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAI 1481
Query: 231 GGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD-NGRW 289
+E G+ WR+G+G + L +D W+P S + A RL VSDL+D +G W
Sbjct: 1482 EYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPI-SAKRNCRLRWVSDLIDQSGSW 1540
Query: 290 NLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
+ + + + F + IL I LS++ D + W+ G + +S Y
Sbjct: 1541 DTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAY 1587
>ref|XP_463188.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|28201549|gb|AAO34487.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 435
Score = 174 bits (441), Expect = 4e-42
Identities = 99/311 (31%), Positives = 163/311 (51%), Gaps = 31/311 (9%)
Query: 47 VENCFHELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRA 106
++N + LL+VK+ +KYLGLPT G+ K+ F +KE+ KRL W EK+LS
Sbjct: 8 IDNTQQSIKTLLKVKQTVFEEKYLGLPTPSGRIKSGKFQSLKEKFEKRLSDWCEKNLSMG 67
Query: 107 GREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKN 166
+E+LIKS+ QA+P Y+MS +P S+C + ++I F+WG D +R +HW W L K
Sbjct: 68 RKEVLIKSVLQALPMYMMSVSKIPVSLCEEYMQLIRKFWWGEDRHKRKVHWISWHQLVKP 127
Query: 167 KRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWSS 226
K GG+ FR+ + F +AL+A+ R+ +P+SL +V K Y P+
Sbjct: 128 KSQGGISFRYLKLFNQALLARQAWRLIQYPDSLCAKVLKAKYYPN--------------- 172
Query: 227 ILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLL-- 284
G+ WR+G +I + +D W+P +L + + + RL+ V+DL+
Sbjct: 173 -------------GIIWRIGSESKIIIWRDNWIPREHNLKVLGKR-SRARLKWVADLMLP 218
Query: 285 DNGRWNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMML 344
+ W+ L+ ++F + IL I LS++ D + W+ G++ +S YK D+
Sbjct: 219 NKQEWDERLIRQLFYPADADIILNIQLSHRMTEDFIAWHYDRVGMFTVRSAYKLALDIQT 278
Query: 345 REEHRPLPCRS 355
R + + C S
Sbjct: 279 RSQGNVVGCSS 289
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 173 bits (439), Expect = 7e-42
Identities = 102/299 (34%), Positives = 164/299 (54%), Gaps = 10/299 (3%)
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIK 113
++++L+V+ + D+YL PT G+ F ++ +IWKR+ W E LS G+E+LIK
Sbjct: 145 ISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIK 204
Query: 114 SIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLG 173
++ QAIP Y+M F LP+S+ D+ ++ F+W +R HW W +L K K GGLG
Sbjct: 205 AVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLG 264
Query: 174 FRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWSSILKAGGK 233
FR + F +AL+A+ R+ +P+SL RV K Y P S++ G S+ A
Sbjct: 265 FRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFG----SNSSPAWRS 320
Query: 234 IEGG----GGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLL-DNGR 288
IE G G+ WRVG+G I + +D WLP S + A RL+ VSDL+ ++G
Sbjct: 321 IEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPI-TGKANCRLKWVSDLITEDGS 379
Query: 289 WNLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREE 347
W++ + + F + + IL I +S++ D + W+ NG++ +S Y+ ++ EE
Sbjct: 380 WDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEE 438
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 172 bits (437), Expect = 1e-41
Identities = 102/275 (37%), Positives = 154/275 (55%), Gaps = 10/275 (3%)
Query: 67 DKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSC 126
D+YLG PT G+ F ++ERIWKRL W E LS G+E+LIKS+ Q IP Y+M
Sbjct: 259 DRYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGENLLSSGGKEVLIKSVIQTIPVYVMGI 318
Query: 127 FILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVA 186
F LP+S+C ++ ++ F+WG + +R HW W L + K +GGLGFR FR F +AL+A
Sbjct: 319 FNLPESVCEELTKLTRNFWWGVEKGKRKTHWKSWECLTRPKSNGGLGFRDFRLFNQALLA 378
Query: 187 KN**RIYMFPESLMGRVFKVVYSPSSSILMAKKGYITWSSILKAGGKIEGG----GGGLR 242
+ R+ + P+SL RV K Y P+ S++ G S + KA IE G G+
Sbjct: 379 RQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGG-NASPVWKA---IEYGLSLLKEGII 434
Query: 243 WRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLL-DNGRWNLELLEEVFSSS 301
WR+G+G + + +D WLP S + RL+ VS+LL +NG W+ + +VF
Sbjct: 435 WRIGNGKSVRIWRDPWLPRDFSRRPITRK-GNCRLKWVSELLSENGAWDETRVNQVFLPV 493
Query: 302 PMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
+ I +I +S++ D + W+ +G + +S Y
Sbjct: 494 DAEAICSIRVSSRQEDDFVAWHPDKHGKFSVRSAY 528
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 171 bits (433), Expect = 3e-41
Identities = 103/278 (37%), Positives = 153/278 (54%), Gaps = 11/278 (3%)
Query: 68 KYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCF 127
KYLGLP + SK +F F+KE++ RL GW K+LS+ G+E+L+KSIA A+P Y+MSCF
Sbjct: 727 KYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCF 786
Query: 128 ILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAK 187
LP ++C + ++ F+W +R +HW W L K GG GF+ + F +AL+AK
Sbjct: 787 KLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAK 846
Query: 188 N**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKIEGGGGGLRWR 244
R+ SL RVF+ Y +S L A +G W SIL + GLR
Sbjct: 847 QAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLM---QGLRTV 903
Query: 245 VGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NGRWNLELLEEVFSSSP 302
+G+G + + DKWL DGS+ ++ KVS L+D + WNL +L ++F
Sbjct: 904 IGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKD 963
Query: 303 MQKIL-AIPLSNQGNTDALYWYDTFNGVYVCKSGYKFI 339
++ IL PL + D+ W + NG+Y K+GY+F+
Sbjct: 964 VEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFL 999
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 171 bits (433), Expect = 3e-41
Identities = 103/278 (37%), Positives = 153/278 (54%), Gaps = 11/278 (3%)
Query: 68 KYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCF 127
KYLGLP + SK +F F+KE++ RL GW K+LS+ G+E+L+KSIA A+P Y+MSCF
Sbjct: 748 KYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCF 807
Query: 128 ILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAK 187
LP ++C + ++ F+W +R +HW W L K GG GF+ + F +AL+AK
Sbjct: 808 KLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAK 867
Query: 188 N**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKIEGGGGGLRWR 244
R+ SL RVF+ Y +S L A +G W SIL + GLR
Sbjct: 868 QAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLM---QGLRTV 924
Query: 245 VGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLD--NGRWNLELLEEVFSSSP 302
+G+G + + DKWL DGS+ ++ KVS L+D + WNL +L ++F
Sbjct: 925 IGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKD 984
Query: 303 MQKIL-AIPLSNQGNTDALYWYDTFNGVYVCKSGYKFI 339
++ IL PL + D+ W + NG+Y K+GY+F+
Sbjct: 985 VEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFL 1020
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 170 bits (430), Expect = 8e-41
Identities = 103/277 (37%), Positives = 157/277 (56%), Gaps = 13/277 (4%)
Query: 68 KYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCF 127
KYLGLP + SK +F ++KE++ L GW +K+LS+ G+EIL+KSIA A+P YIM+CF
Sbjct: 701 KYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCF 760
Query: 128 ILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAK 187
LP +C + ++ F+W +HW L K GG GF+ + F +AL+AK
Sbjct: 761 RLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAK 820
Query: 188 N**RIYMFPESLMGRVFKVVYSPSSSILMAKKG---YITWSSILKAGGKIEGGGGGLRWR 244
R++ +S++ ++FK Y ++ L A++G TW SIL + GGL+
Sbjct: 821 QAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELL---NGGLKRL 877
Query: 245 VGDGFQINLLQDKWLPDGSSLVYMH-EAIAELRLEKVSDLLD--NGRWNLELLEEVFSSS 301
+G+G Q N+ DKWL DG S M+ ++ + + KVS L+D WNL+ L E+F
Sbjct: 878 IGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHM-KVSHLIDPLTRNWNLKKLTELFHEK 936
Query: 302 PMQKIL-AIPLSNQGNTDALYWYDTFNGVYVCKSGYK 337
+Q I+ PL + + D+ W T NG+Y KSGY+
Sbjct: 937 DVQLIMHQRPLIS--SEDSYCWAGTNNGLYTVKSGYE 971
>ref|XP_474837.1| OSJNBa0052O21.12 [Oryza sativa (japonica cultivar-group)]
gi|38345009|emb|CAE01608.2| OSJNBa0052O21.12 [Oryza
sativa (japonica cultivar-group)]
Length = 427
Score = 169 bits (427), Expect = 2e-40
Identities = 97/279 (34%), Positives = 151/279 (53%), Gaps = 11/279 (3%)
Query: 46 CVENCFHELTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSR 105
C+E+ + + + L+V D YLG+PT IG++ T F+F+ ER+W+R+ GW ++ +SR
Sbjct: 151 CLEDIKNSVKETLQVSVEILQDTYLGMPTEIGRASTGSFHFLPERVWRRVNGWNDRPMSR 210
Query: 106 AGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCK 165
A +E ++K++AQAIP+Y+MSCF LP S C + I +WG + ++ +HW W +
Sbjct: 211 ARKETMLKAVAQAIPTYVMSCFKLPVSTCEKMKSCILDHWWGFEDGKKKMHWRSWEWMTT 270
Query: 166 NKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSILMAKK---GYI 222
K GG+GFR F +A++A+ RI SL RV K Y P+S + A K
Sbjct: 271 PKSLGGMGFRDLGLFNQAMLARQGWRIVTDLVSLCARVLKGRYFPNSDLWNAPKPTATSF 330
Query: 223 TWSSILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSD 282
TW SIL + G+RW +G+G + +L+D W+P M + L + D
Sbjct: 331 TWPSILFGRDLLR---KGVRWGIGNGSSVKILKDHWIP--GIKPSMVRPLLPLPEDVTVD 385
Query: 283 LLDN---GRWNLELLEEVFSSSPMQKILAIPLSNQGNTD 318
L N G W+ + + F + Q+IL IP+S G D
Sbjct: 386 FLVNDAIGEWDEDKVFSFFDETTAQQILQIPVSAHGGED 424
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 165 bits (417), Expect = 2e-39
Identities = 96/286 (33%), Positives = 149/286 (51%), Gaps = 9/286 (3%)
Query: 57 LLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIA 116
+L+V+ DK LGLPT G+ K + F +KER KRL W E+ LS AG+E LIKS+A
Sbjct: 726 VLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKEALIKSVA 785
Query: 117 QAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRGLHWTRWANLCKNKRDGGLGFRF 176
QA+P+Y M F +P+ C + ++++ F+WG + + +HW W L K GGLGFR
Sbjct: 786 QALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRD 845
Query: 177 FRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSI---LMAKKGYITWSSILKAGGK 233
R F +AL+A+ R+ P+SL RV K Y P+ +I TW I+
Sbjct: 846 IRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHG--- 902
Query: 234 IEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLL--DNGRWNL 291
+E GL WR+GDG + + ++ W+ G +L + + R+ V +L+ D WN
Sbjct: 903 LELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEKKTWN-RVIYVRELIVTDTKTWNE 961
Query: 292 ELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYK 337
L+ + +IL I + + D W+ G++ +S Y+
Sbjct: 962 PLIRHIIREEDADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYR 1007
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.334 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 652,558,011
Number of Sequences: 2540612
Number of extensions: 27583084
Number of successful extensions: 93329
Number of sequences better than 10.0: 244
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 92852
Number of HSP's gapped (non-prelim): 330
length of query: 388
length of database: 863,360,394
effective HSP length: 130
effective length of query: 258
effective length of database: 533,080,834
effective search space: 137534855172
effective search space used: 137534855172
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0023.9