BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.8
         (85 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO77994.1| glycosyltransferase [Bacteroides thetaiotaomicron...    32  5.3
ref|YP_054474.1| ATP synthase F0 subunit 6 [Podura aquatica] gi|...    31  9.1

>gb|AAO77994.1| glycosyltransferase [Bacteroides thetaiotaomicron VPI-5482]
           gi|29348297|ref|NP_811800.1| glycosyltransferase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 355

 Score = 31.6 bits (70), Expect = 5.3
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 1   MILIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGM 54
           MILI  +  +F F N + +  +   + I I  V W++F L L  +E IR + G+
Sbjct: 299 MILILALALFFSFFNIVAVEYISNNIVIFIDIVLWIAFHLWLDRRELIRAKHGV 352


>ref|YP_054474.1| ATP synthase F0 subunit 6 [Podura aquatica]
           gi|50059271|gb|AAT69336.1| ATP synthase F0 subunit 6
           [Podura aquatica]
          Length = 220

 Score = 30.8 bits (68), Expect = 9.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 2   ILIGVMFFYFFFCNFIGLI------TMGLLLRIGIGDVAWLSFVL 40
           I+   +FF F F NF+GL       +  L++ + +    W+SF+L
Sbjct: 68  IMFSALFFIFLFNNFLGLFPYIFTSSSHLVMNLSVAAPMWMSFML 112


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.343    0.159    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,050,431
Number of Sequences: 2540612
Number of extensions: 4574616
Number of successful extensions: 22701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22700
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 863,360,394
effective HSP length: 61
effective length of query: 24
effective length of database: 708,383,062
effective search space: 17001193488
effective search space used: 17001193488
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 68 (30.8 bits)