BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.7
         (362 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAK89332.1| NRAP like nucleolar RNA associated protein [Crypt...    37  1.2
prf||2019440A Sm70 antigen                                             37  1.2
ref|NP_285675.1| methyl-accepting chemotaxis protein [Deinococcu...    35  4.6
gb|EAK99680.1| hypothetical protein CaO19.10031 [Candida albican...    35  4.6

>gb|EAK89332.1| NRAP like nucleolar RNA associated protein [Cryptosporidium parvum]
           gi|66359678|ref|XP_627017.1| NRAP like nucleolar RNA
           associated protein [Cryptosporidium parvum]
          Length = 1301

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 215 RVSQKTIHSHKDSCLDKDYYLYNTLRYSQEQYNSALLTVTSYYTRSILPGTSSQCL 270
           ++S+ +I  +++ C+ + +  Y+T +Y Q+Q NS  L  T  Y  +IL  T +Q L
Sbjct: 285 KLSKDSISVYRN-CVRRSFMNYDTFKYYQDQLNSCFLPPTPQYNGAILSNTKNQML 339


>prf||2019440A Sm70 antigen
          Length = 576

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 33/216 (15%)

Query: 81  MSPISATLILLTHGVQVLVRVLNSNHFAPVPPRMANHHEPV------------VDHLAVW 128
           +S +  T  L   GV     V NSN    + P    +H  V             D+ ++ 
Sbjct: 79  LSELPNTSSLSMQGVYEKNLVENSNSRRTIVPPGRVYHRTVDRRLVVRGQENDCDYSSIK 138

Query: 129 RPSNHKQIDKQTSKQDSARVNSRNKAGHLGPNTGLVFNHFCSGFIYDLSN-------SQD 181
             +N+K   K  S + S R  S N +  +  +TG   +  CS  +    +       S +
Sbjct: 139 PQTNNKGYVKSKSNRPSIRTLSNNNSRQISHHTGNSRDFSCSRIVNSSRSNNNTTHYSSN 198

Query: 182 GHNPPCLTISTCYAG--HEQEQY----NSTWLTVTFYYVRVSQKTIHSH-----KDSCLD 230
           G N      ST      H+ +      NS   +V+  Y      TI SH       S +D
Sbjct: 199 GLNRSIKYYSTYQLNGPHQSDSSSSSGNSCTSSVSSEYSTEDSPTIASHISSSLSSSSID 258

Query: 231 KDYYLYNTLRYSQEQYNSALLTVTSYYTRSILPGTS 266
            ++ L N+ RY   + NS L    S + R+ LP +S
Sbjct: 259 DNFNLNNSSRY---KLNSKLSMPESNWQRNALPNSS 291


>ref|NP_285675.1| methyl-accepting chemotaxis protein [Deinococcus radiodurans R1]
          gi|6460728|gb|AAF12433.1| methyl-accepting chemotaxis
          protein [Deinococcus radiodurans]
          gi|7473133|pir||D75590 methyl-accepting chemotaxis
          protein - Deinococcus radiodurans (strain R1)
          Length = 743

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 8/77 (10%)

Query: 20 PSTTRTRHGGSDLSKSWSMTAVLFQIWTSVGSGGGGRRLAAMAEAAGERCFGGGGWEKTN 79
          P  +R     SDLS++   + +L       G  G G++L  MA + G    G   W+ T 
Sbjct: 12 PPFSRQNRKSSDLSRAPQRSGLL-------GRLGIGQKLGLMALSLGVPVVGLAAWQATQ 64

Query: 80 QMSPISATLILLTHGVQ 96
          Q+S I+ T+  L HG+Q
Sbjct: 65 QLSRINHTVTQL-HGLQ 80


>gb|EAK99680.1| hypothetical protein CaO19.10031 [Candida albicans SC5314]
           gi|46440284|gb|EAK99592.1| hypothetical protein
           CaO19.2495 [Candida albicans SC5314]
          Length = 1571

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 126 AVWRPSNHKQIDKQTSKQDSARVNSRNKAGHLGPNTGLVFNHFCSGFIYDLSNSQDGHNP 185
           + W P N   I  +  K     +   NK G    N   +++HF +  + D  +S+     
Sbjct: 9   SAWCPENGALISNE--KIHEIFLTLGNKFGFQDDNVSNMYDHFMT--LLDSRSSRMSCPN 64

Query: 186 PCLTISTCYAGHEQEQYNSTWLTVTFYYVRVSQKTIHSHKDSCLDKDYYLYNTLRYSQEQ 245
             L++   Y G +   Y   + +  +Y+       +   K    D   +LY+  +Y++E 
Sbjct: 65  ALLSLHLDYIGGKNSNYKKWYFSAQWYFEHEWSPKMKKRKAISSDYQLWLYHFQKYTEED 124

Query: 246 Y 246
           Y
Sbjct: 125 Y 125


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.318    0.132    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 685,174,851
Number of Sequences: 2540612
Number of extensions: 28975478
Number of successful extensions: 73125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 73124
Number of HSP's gapped (non-prelim): 4
length of query: 362
length of database: 863,360,394
effective HSP length: 129
effective length of query: 233
effective length of database: 535,621,446
effective search space: 124799796918
effective search space used: 124799796918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)