BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.3
(106 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 43 0.002
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 42 0.004
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 41 0.008
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 41 0.008
gb|AAV43906.1| hypothetical protein [Oryza sativa (japonica cult... 41 0.008
emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar... 40 0.011
gb|AAP51804.1| putative retroelement [Oryza sativa (japonica cul... 40 0.014
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 40 0.018
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 39 0.024
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 39 0.024
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 39 0.024
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 39 0.031
emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-gro... 39 0.031
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 39 0.031
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 38 0.053
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 38 0.069
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 37 0.090
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 37 0.090
gb|AAU89733.1| hypothetical protein [Solanum tuberosum] 37 0.12
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 37 0.12
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 43.1 bits (100), Expect = 0.002
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC*RA 54
HL+ W++V K GGL +R R N+ALL K WR+ +DR + A R+
Sbjct: 85 HLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRS 135
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 42.0 bits (97), Expect = 0.004
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
HLV+W KV + K GGL VR + N AL+ K WR+ Q++ +
Sbjct: 194 HLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 237
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 40.8 bits (94), Expect = 0.008
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC*RA--SI*KIH- 60
HL+ W+KV K GGL +R ++ N ALL K WR+ D+ + A R + +H
Sbjct: 635 HLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKVTDVHD 694
Query: 61 NSWSVKLKV---TCRTLGTSL 78
+SW V T R++G L
Sbjct: 695 SSWLVPKATWSSTWRSIGVGL 715
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 40.8 bits (94), Expect = 0.008
Identities = 17/43 (39%), Positives = 29/43 (66%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRK 45
+H+++WE + K+ GGL +TRK NIALL K ++R+ ++
Sbjct: 373 YHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKE 415
>gb|AAV43906.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55167961|gb|AAV43830.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 697
Score = 40.8 bits (94), Expect = 0.008
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
H + WEK+T+ K GGL R+TR N ALL + WR+
Sbjct: 271 HWISWEKLTSPKLHGGLGFRDTRSFNQALLARQAWRL 307
>emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar-group)]
Length = 633
Score = 40.4 bits (93), Expect = 0.011
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
+H+V+WE + KD GGL ETR NIALL K ++++
Sbjct: 358 YHMVKWEDMAFPKDFGGLGFTETRAMNIALLAKWIFKL 395
>gb|AAP51804.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37530430|ref|NP_919517.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19920067|gb|AAM08499.1| Putative retroelement [Oryza
sativa]
Length = 988
Score = 40.0 bits (92), Expect = 0.014
Identities = 22/49 (44%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC 51
+H+VRWE + KD GGL TR NIALL K W + + C A C
Sbjct: 787 YHMVRWEALCRPKDFGGLGFSNTRVMNIALLSK--WIIKLESGCNDACC 833
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 39.7 bits (91), Expect = 0.018
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM--SQDRKCI 47
+H+V+WE + KD GGL ETR+ N ALL K + ++ D CI
Sbjct: 1461 YHMVKWEDLAFPKDYGGLGFTETRRMNTALLAKWIMKIESEDDSLCI 1507
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 39.3 bits (90), Expect = 0.024
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
HL+ W++V + GGL +R+ + N ALL K WR+ QD
Sbjct: 362 HLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQD 401
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 39.3 bits (90), Expect = 0.024
Identities = 17/44 (38%), Positives = 26/44 (58%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
HL+ W K+ K GG+ +R R N AL+ K WR+ QD++ +
Sbjct: 700 HLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESL 743
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 39.3 bits (90), Expect = 0.024
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
+HLV W V + +D GGL V + N A+LGK +WR+ +
Sbjct: 642 YHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENE 682
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 38.9 bits (89), Expect = 0.031
Identities = 17/37 (45%), Positives = 23/37 (61%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
V W K+ + K GGL +R+ + NIALL K WR+ Q
Sbjct: 294 VAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQ 330
>emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-group)]
Length = 1579
Score = 38.9 bits (89), Expect = 0.031
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
+H+V+ E + KD GGL ETRK NIALL K + ++ + K +
Sbjct: 1206 YHMVKLEDMAFPKDFGGLGFTETRKMNIALLAKWIMKVDSEDKSL 1250
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 38.9 bits (89), Expect = 0.031
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM--SQDRKC 46
H + WEK+T+ K GGL R+ R N ALL + WR+ S D C
Sbjct: 825 HWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLC 869
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 38.1 bits (87), Expect = 0.053
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDR 44
HLV W++V K GGL +R ++ N AL+ K WR+ DR
Sbjct: 514 HLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDR 554
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 37.7 bits (86), Expect = 0.069
Identities = 17/40 (42%), Positives = 24/40 (59%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
H + W K+T K+ GGL R+ N+A+L K WR+ QD
Sbjct: 1038 HWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQD 1077
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 37.4 bits (85), Expect = 0.090
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
H V WEK+ K+ GGL R+ N ALL K WR+ Q
Sbjct: 613 HWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQ 651
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 37.4 bits (85), Expect = 0.090
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 1 TCWHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
T W V W K+TN K+ GGL R+ + N +LL K WR+
Sbjct: 731 TSW--VAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRL 768
>gb|AAU89733.1| hypothetical protein [Solanum tuberosum]
Length = 327
Score = 37.0 bits (84), Expect = 0.12
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
HLV+W KVT K GGL +++ N LL K WR +Q+
Sbjct: 122 HLVKWAKVTLPKQYGGLGIKDLALHNKCLLLKWHWRYNQE 161
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 37.0 bits (84), Expect = 0.12
Identities = 18/44 (40%), Positives = 24/44 (53%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
H + WEK+ K+ GGL R+ N ALL K WR+ Q C+
Sbjct: 685 HWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCL 728
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.341 0.146 0.527
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,095,918
Number of Sequences: 2540612
Number of extensions: 4703209
Number of successful extensions: 9869
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9808
Number of HSP's gapped (non-prelim): 63
length of query: 106
length of database: 863,360,394
effective HSP length: 82
effective length of query: 24
effective length of database: 655,030,210
effective search space: 15720725040
effective search space used: 15720725040
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0023.3