BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.13
(195 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 123 3e-27
gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (jap... 105 5e-22
gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cult... 102 6e-21
ref|XP_470224.1| Putative retroelement [Oryza sativa] gi|1545160... 101 1e-20
emb|CAE04006.2| OSJNBa0045O17.3 [Oryza sativa (japonica cultivar... 100 2e-20
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 90 3e-17
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultiva... 90 4e-17
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 89 5e-17
gb|AAP54679.1| putative reverse transcriptase [Oryza sativa (jap... 88 2e-16
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 87 2e-16
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 87 2e-16
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 87 2e-16
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 87 2e-16
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 87 3e-16
gb|AAP53623.1| putative non-LTR retroelement reverse transcripta... 86 6e-16
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 82 6e-15
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 81 1e-14
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 81 2e-14
gb|AAP51805.1| putative retroelement [Oryza sativa (japonica cul... 81 2e-14
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 80 2e-14
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 123 bits (308), Expect = 3e-27
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 6 QKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTKYF 65
+K++ LD L E ER WT L+ E SR++W+KEGD NT+YF
Sbjct: 168 EKIHFLDNIANSRLLCTNELQERDDAQLNLWTWLKRSESYWALNSRARWIKEGDSNTRYF 227
Query: 66 HSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEISFKSIS 125
H+L R+ N + + +G + P IK E YF+ F T + ++F +S
Sbjct: 228 HTLATIRRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQHIFAEEFSTRPVFNGLNFNKLS 287
Query: 126 DADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLEDFWNR 185
+++ L F EE+ AV C K+P PD FNFKFI+ W+++K D ++++EDFW
Sbjct: 288 ESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKIVEDFWAS 347
Query: 186 G 186
G
Sbjct: 348 G 348
>gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|34896522|ref|NP_909605.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1556
Score = 105 bits (263), Expect = 5e-22
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 5/186 (2%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ E++ KL+ L +K E L+E E N + L D +LR E YQ+++ K L EGD
Sbjct: 1082 KKELLDKLDTLVKKAEHTILNEFELNVKHVLNDRLAELLREEEIKWYQRAKVKHLLEGDA 1141
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQA-IKTEVQNYFEQCFTNSLGTLVRLDEI 119
NTKY+H L N R R I L DGN V A +K + YF+ F S + + LDE
Sbjct: 1142 NTKYYHLLANGRHRKTRIFQLQ-DGNEVITGDAQLKEHITKYFKTLFGPSQTSSIFLDES 1200
Query: 120 ---SFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFH 176
+ +S +NE LT F EE+K A+++ + +P PD F +F Q FW ++KDD
Sbjct: 1201 QVDDIRQVSAEENESLTADFTEEEIKCAIFQMKHNTAPGPDGFPPEFYQAFWTIIKDDLL 1260
Query: 177 RVLEDF 182
+ DF
Sbjct: 1261 ALFSDF 1266
>gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1237
Score = 102 bits (254), Expect = 6e-21
Identities = 59/187 (31%), Positives = 103/187 (54%), Gaps = 3/187 (1%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ +++ KL+ LD+K E LS EE + R + + ++LR E YQ+++SK + EGD
Sbjct: 943 KKKILDKLDLLDKKAENSLLSPEELDIRWFCRNRLSSILREEEIKWYQRAKSKDILEGDS 1002
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDE-- 118
NTKYFH + N + R I L + ++ +K+ + Y++ F +L++ DE
Sbjct: 1003 NTKYFHLVANGKHRKTRIFQLQDSDHLIDGDANLKSHITTYYKGLFGPPDDSLLQFDESR 1062
Query: 119 -ISFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHR 177
IS +NE LT F +E+K A+++ +K+ PD F +F Q FW+++K+D
Sbjct: 1063 VADIPQISLLENEALTQDFTEKEIKKAIFQMEHNKASGPDGFPAEFYQVFWNVIKNDLLD 1122
Query: 178 VLEDFWN 184
+ ++F N
Sbjct: 1123 LFKEFHN 1129
>ref|XP_470224.1| Putative retroelement [Oryza sativa] gi|15451602|gb|AAK98726.1|
Putative retroelement [Oryza sativa]
Length = 427
Score = 101 bits (251), Expect = 1e-20
Identities = 60/190 (31%), Positives = 98/190 (51%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ E++ K+ ++D+K E G++ E ER L +E V+R Q+ + K L EGD
Sbjct: 11 KQEIMGKIEDIDKKCEAYGMTILERKERGDLEEELKKVVREDRLKWMQRCKEKNLLEGDD 70
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEIS 120
NTKY+H+ N RKR N I L + ++ + + N+++Q F L+
Sbjct: 71 NTKYYHAKANGRKRKNMIYSLDQEDGEIKGQSDLMKYITNFYKQLFGPPPENDFTLNLEG 130
Query: 121 FKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLE 180
+S+A+ E L MEE+K V+ +K+P PD F +F + FW L+KDD ++
Sbjct: 131 IAMLSEAEKERLIRPIEMEELKKVVFGMENNKAPGPDGFPVEFYKHFWYLIKDDLMELII 190
Query: 181 DFWNRGCGLK 190
DF R G++
Sbjct: 191 DFMKRKIGVE 200
>emb|CAE04006.2| OSJNBa0045O17.3 [Oryza sativa (japonica cultivar-group)]
gi|50930365|ref|XP_474710.1| OSJNBa0045O17.3 [Oryza
sativa (japonica cultivar-group)]
Length = 492
Score = 100 bits (250), Expect = 2e-20
Identities = 59/187 (31%), Positives = 98/187 (51%), Gaps = 3/187 (1%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ E++ L+ LD+K E L EE + R + + ++LR E YQ+++SK L EGD
Sbjct: 74 KKEILDNLDLLDKKAETSLLRPEELDIRWFYRNRLSSILREEEIKWYQRAKSKDLLEGDS 133
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDE-- 118
NTKYFH + N + R I L + + +K+ + Y++ F +L++ DE
Sbjct: 134 NTKYFHLVANGKHRKTRIFQLHDGDHLIHGDANLKSHITTYYKGLFGPPEESLLQFDESK 193
Query: 119 -ISFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHR 177
+S +NE LT F E+K A+++ +K+P PD F +F Q FW ++K+D
Sbjct: 194 VADIPQVSHLENEALTQEFIEMEIKEAIFQMEHNKAPGPDGFPAEFYQVFWSVIKNDLFD 253
Query: 178 VLEDFWN 184
+ +F N
Sbjct: 254 LFTEFHN 260
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 90.1 bits (222), Expect = 3e-17
Identities = 52/159 (32%), Positives = 86/159 (53%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ +++K+ LD K E G+S E+ ERK L D+ V+R + +Q+S+ K L EGD
Sbjct: 290 KESILEKIENLDAKVERCGMSREDREERKELEDKLNFVIREEKIKWFQRSKEKELLEGDC 349
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEIS 120
NTKY+H+ N RKR + I L + +E + + T + ++++ F + + LD
Sbjct: 350 NTKYYHAKANGRKRKSYIHSLTQEEGEIEGQEKLLTYITSFYKDLFGHPKQNTLFLDMRG 409
Query: 121 FKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEF 159
+I + +LT F EEV+ V+E +K+P PD F
Sbjct: 410 VTTIMEEHKVMLTKPFSEEEVRIVVFELKKNKAPGPDGF 448
>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 89.7 bits (221), Expect = 4e-17
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 10/196 (5%)
Query: 4 VVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTK 63
+++++ + D + LS+ E +R L D+ + + E ++S KWL EGD NT
Sbjct: 19 LLKEMQKWDDAADSRNLSQGEWKQRYELEDQLNIIFQEEEIYWQERSGEKWLLEGDANTT 78
Query: 64 YFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEISFKS 123
+FH + N +KR +I L DG +E ++ + Y++ F + L V L + +
Sbjct: 79 FFHGVANGKKRIITIRSLEEDGRVIEGNSELREHITRYYKGLFGSELPPKVFLSQDMRRD 138
Query: 124 ---ISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLE 180
+ DN+ L F MEE++ A+ E + +P PD F ++FW+ LKD +L+
Sbjct: 139 RGRVDQEDNDFLVRPFSMEEIERALAEMKTNTAPGPDGLPVCFYKEFWEQLKDQIKEMLD 198
Query: 181 -------DFWNRGCGL 189
D W G+
Sbjct: 199 SLFEGRLDLWRLNYGV 214
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 89.4 bits (220), Expect = 5e-17
Identities = 56/182 (30%), Positives = 93/182 (50%), Gaps = 4/182 (2%)
Query: 4 VVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTK 63
++ K++ELD+ E L+ +E + + + +LR E YQ++++K + GD+NTK
Sbjct: 1031 LIAKVDELDKLAETRILTSQELDLKNSCKNALAQLLREEEVKWYQRAKTKRIV-GDRNTK 1089
Query: 64 YFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEIS--- 120
Y+H + N + R I L + ++ +K V NY+ F G + E
Sbjct: 1090 YYHMITNGKHRKTKIFQLEQEEGVIKGDAQLKKYVTNYYRGLFGAPDGNCFSMCESQKDD 1149
Query: 121 FKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLE 180
+S +N LT F EEVK AV++ +K+P PD F +F Q FW+++K+D V
Sbjct: 1150 IPQVSMEENTFLTKEFTEEEVKHAVFQMEHNKAPGPDGFPAEFYQVFWEVIKEDLMAVFR 1209
Query: 181 DF 182
DF
Sbjct: 1210 DF 1211
>gb|AAP54679.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536180|ref|NP_922392.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|22122907|gb|AAM92290.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1151
Score = 87.8 bits (216), Expect = 2e-16
Identities = 49/182 (26%), Positives = 95/182 (51%), Gaps = 1/182 (0%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ ++++K++ +D K E G++ + ER+ L + +R + +++S+ K EGD
Sbjct: 798 KEDILRKIDAIDIKVESAGMTSSDREERRSLEQKLCYTIREEKLKWFRRSKVKETLEGDC 857
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEIS 120
NTKY+H+ N R+++ I L + +E + + +++ F +S + +D
Sbjct: 858 NTKYYHAKANGRRKSQ-IHSLSQEEGEIEGQSNLLQYITQFYKNLFGHSKENSITIDLNG 916
Query: 121 FKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLE 180
+S+ D L F +EEV+ V+ +K+P PD +F KFWDL+K+D ++
Sbjct: 917 TCKVSEEDKAKLVQPFCLEEVRTVVFYLKHNKAPGPDGLPGEFYVKFWDLIKNDLLDLIN 976
Query: 181 DF 182
DF
Sbjct: 977 DF 978
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 87.4 bits (215), Expect = 2e-16
Identities = 57/188 (30%), Positives = 94/188 (49%), Gaps = 8/188 (4%)
Query: 4 VVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTK 63
V ++L + +K E+ S + + D +L E L Q+SR WLKEGD+NT+
Sbjct: 846 VGRELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTR 905
Query: 64 YFHSLINWRKRTNSIMGLMIDGNWVED-PQAIKTEVQNYFEQCF----TNSLGTLVRLDE 118
+FHS WR + N I L + + ++T YF++ + + + ++ RL +
Sbjct: 906 FFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEVYKADPSLNPESVTRLFQ 965
Query: 119 ISFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRV 178
+ ++DA NE L F EE+ A+++ G KSP PD F +F Q+ W LK D
Sbjct: 966 ---EKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILA 1022
Query: 179 LEDFWNRG 186
+ +F+ G
Sbjct: 1023 VRNFFQSG 1030
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 87.4 bits (215), Expect = 2e-16
Identities = 57/188 (30%), Positives = 94/188 (49%), Gaps = 8/188 (4%)
Query: 4 VVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTK 63
V ++L + +K E+ S + + D +L E L Q+SR WLKEGD+NT+
Sbjct: 846 VGRELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTR 905
Query: 64 YFHSLINWRKRTNSIMGLMIDGNWVED-PQAIKTEVQNYFEQCF----TNSLGTLVRLDE 118
+FHS WR + N I L + + ++T YF++ + + + ++ RL +
Sbjct: 906 FFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEVYKADPSLNPESVTRLFQ 965
Query: 119 ISFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRV 178
+ ++DA NE L F EE+ A+++ G KSP PD F +F Q+ W LK D
Sbjct: 966 ---EKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILA 1022
Query: 179 LEDFWNRG 186
+ +F+ G
Sbjct: 1023 VRNFFQSG 1030
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 87.4 bits (215), Expect = 2e-16
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 4 VVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTK 63
V ++L + +K E+ S + + D +L E L Q+SR WLKEGD+NT+
Sbjct: 934 VGKELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTR 993
Query: 64 YFHSLINWRKRTNSIMGLMIDGNWVEDPQAI-KTEVQNYFEQCF----TNSLGTLVRLDE 118
+FHS WR + N I L + + ++ +T YF+ + + + ++ RL +
Sbjct: 994 FFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQ 1053
Query: 119 ISFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRV 178
+ ++DA NE L F EE+ A+++ G KSP PD F +F Q+ W LK D
Sbjct: 1054 ---EKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILA 1110
Query: 179 LEDFWNRGCGLKDV 192
+ +F+ G K V
Sbjct: 1111 VRNFFQSGLMPKGV 1124
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 87.4 bits (215), Expect = 2e-16
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ +++++ ++ + + LS +E +R +L + + E +S KWL EGD
Sbjct: 16 KENLMREIKNIEDEADHRNLSSDEWQKRYFLEGKLNQIYFDEEKYWQGRSGEKWLLEGDA 75
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEIS 120
NT +FH + N RKR + I L DG +E+P +K + +++ F + + L +
Sbjct: 76 NTSFFHGVANGRKRKSLIRALEEDGRIIEEPAELKAHIYQFYKNLFGAEVAPKIFLSQDM 135
Query: 121 FK---SISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHR 177
+ +S + E L F EE+ A+ + D +P PD F F + FW L+D F
Sbjct: 136 WMHRGRLSQEEREHLIRPFTFEEMDQALKQMKTDTAPGPDGFTVSFYRAFWPQLRDQFKE 195
Query: 178 VLE-------DFWNRGCGL 189
+L+ D W G+
Sbjct: 196 MLDLLFEGRLDLWRINYGV 214
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 86.7 bits (213), Expect = 3e-16
Identities = 61/180 (33%), Positives = 89/180 (48%), Gaps = 7/180 (3%)
Query: 10 ELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTKYFHSLI 69
ELD + ++ S EE E L E + R E YQKSRS W+K GD N+K+FH+L
Sbjct: 87 ELDVAQRDDDRSREEITELTLRLKEAY---RDEEQYWYQKSRSLWMKLGDNNSKFFHALT 143
Query: 70 NWRKRTNSIMGLMID-GNWVEDPQAIKTEVQNYFEQCFTNSLGTLV--RLDEISFKSISD 126
R+ N I GL + G W + I+ +YF+ FT + + L E+ I+D
Sbjct: 144 KQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQV-LITD 202
Query: 127 ADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLEDFWNRG 186
N+LLT EV+ A++ +K+P PD F QK W ++K D ++ F G
Sbjct: 203 RINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEG 262
>gb|AAP53623.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534068|ref|NP_921336.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|19881727|gb|AAM01128.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1228
Score = 85.9 bits (211), Expect = 6e-16
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 3/187 (1%)
Query: 7 KLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTKYFH 66
K+ ELD+K E L+ +E N+R ++ + + E +++ +W+ EGD+NT++FH
Sbjct: 824 KIEELDKKALTEELTSDEWNQRYSWENDLEHIYEMEELYWHKRCGEQWILEGDRNTEFFH 883
Query: 67 SLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDE---ISFKS 123
+ N RKR I LM + I+ + Y++ F + + L + + +
Sbjct: 884 RVANGRKRKCHITSLMDGETELTSKSEIREHIVEYYKTLFRDVPTANIHLSQGVWTNHLN 943
Query: 124 ISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLEDFW 183
+SDA E LT F M E+ + E + +P PD F+ F + FW +K+D +L
Sbjct: 944 LSDASKENLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYRAFWPQVKNDLFEMLLMLH 1003
Query: 184 NRGCGLK 190
N LK
Sbjct: 1004 NEDLDLK 1010
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 82.4 bits (202), Expect = 6e-15
Identities = 53/163 (32%), Positives = 85/163 (51%), Gaps = 2/163 (1%)
Query: 23 EENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNTKYFHSLINWRKRTNSIMGL- 81
+ +NE + E +L E Q+SR WLKEGD NT+YFH +WR + N I L
Sbjct: 298 DTDNEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLK 357
Query: 82 MIDGNWVEDPQAIKTEVQNYFEQCFTNSLG-TLVRLDEISFKSISDADNELLTGRFGMEE 140
DG+ + + +K +++F+Q +T V L + + IS+ N L F EE
Sbjct: 358 KNDGSTTMNKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADLIKPFTNEE 417
Query: 141 VKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVLEDFW 183
+ A+++ G K+P PD F +F+Q+ W LLK + + +F+
Sbjct: 418 ISDALFQIGPLKAPGPDGFPARFLQRNWGLLKGEVIAAVRNFF 460
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 81.3 bits (199), Expect = 1e-14
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 8/187 (4%)
Query: 4 VVQKLNE-LDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQNT 62
+V NE +D + ++ + EE + L E + E YQKSRS W+K GD N+
Sbjct: 146 IVHIKNEFIDAAQRDDSRTSEEITDLTIRLKEAYID---EEQYWYQKSRSLWMKVGDNNS 202
Query: 63 KYFHSLINWRKRTNSIMGLMID-GNWVEDPQAIKTEVQNYFEQCF--TNSLGTLVRLDEI 119
KYFH+L R+ N I+GL + G W + + ++ +YFE F +N L E+
Sbjct: 203 KYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVSYFETLFNKSNPQNIAESLSEV 262
Query: 120 SFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFWDLLKDDFHRVL 179
I+D N+ LT +EV+ A++ +K+P PD F QK W +K D ++
Sbjct: 263 K-TLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGMTALFFQKPWATIKMDMLFLV 321
Query: 180 EDFWNRG 186
F G
Sbjct: 322 NSFLQDG 328
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 80.9 bits (198), Expect = 2e-14
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 38 VLRLHE*LLYQKSRSKWLKEGDQNTKYFHSLINWRKRTNSIMGLM-IDGNWVEDPQAIKT 96
+L E L Q+SR WLKEGD+NTK+FH+ + WR + N I L G + ++
Sbjct: 716 LLYREEMLWLQRSRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQ 775
Query: 97 EVQNYFEQCFTN----SLGTLVRLDEISFKSISDADNELLTGRFGMEEVKGAVWECGGDK 152
YF+ FT + RL + +++ N L F +E+ A+++ G K
Sbjct: 776 MATQYFKDMFTADPNLDHSPVTRLIQ---PKVTEEMNNRLCSEFSEDEIANALFQIGPLK 832
Query: 153 SPEPDEFNFKFIQKFWDLLKDDFHRVLEDFWNRGCGLKDV 192
+P D F +F Q+ W +K+D R +++F++ G L+ V
Sbjct: 833 APGTDGFLARFYQRNWGCIKNDIVRAVKEFFHSGIMLEGV 872
>gb|AAP51805.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37530432|ref|NP_919518.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19920068|gb|AAM08500.1| Putative retroelement [Oryza
sativa]
Length = 288
Score = 80.9 bits (198), Expect = 2e-14
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 1 RNEVVQKLNELDRKEEEEGLSEEENNERKWLLDEFWTVLRLHE*LLYQKSRSKWLKEGDQ 60
+ E++ ++ ++D + E++ L+ EE R L + E +S KW+ EGD
Sbjct: 114 KEELISQIQKIDEEVEKKELTCEEWGHRYELEGALNQIFISEEIYWQGRSGEKWMLEGDA 173
Query: 61 NTKYFHSLINWRKRTNSIMGLMIDGNWVEDPQAIKTEVQNYFEQCFTNSLGTLVRLDEIS 120
N +FH + N RKR +I L + +E+ +K + ++++ F L L
Sbjct: 174 NAAFFHGVANGRKRKTTIRSLEGEEGPIENADELKEHIYGFYKKLFGMELPPKFCLSHNM 233
Query: 121 FKS---ISDADNELLTGRFGMEEVKGAVWECGGDKSPEPDEFNFKFIQKFW 168
++ +S DN LT F MEE++GA+ E + +P PD F+ F ++FW
Sbjct: 234 WEGRGRLSSEDNIELTKPFSMEEIEGALREMKTNTAPGPDGFSVSFYKEFW 284
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 80.5 bits (197), Expect = 2e-14
Identities = 51/147 (34%), Positives = 74/147 (49%), Gaps = 4/147 (2%)
Query: 40 RLHE*LLYQKSRSKWLKEGDQNTKYFHSLINWRKRTNSIMGLMIDGNWV--EDPQAIKTE 97
+L E Q+SR WL GD+NT YFH++ +RT + + +M D N V + I
Sbjct: 225 KLEEQFWKQRSRVLWLHSGDRNTGYFHAVTR-NRRTQNRLTVMEDINGVAQHEEHQISQI 283
Query: 98 VQNYFEQCFTN-SLGTLVRLDEISFKSISDADNELLTGRFGMEEVKGAVWECGGDKSPEP 156
+ YF+Q FT+ S G +DE +S DN+ LT EEVK AV+ K+P P
Sbjct: 284 ISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGP 343
Query: 157 DEFNFKFIQKFWDLLKDDFHRVLEDFW 183
D F F +W ++ D R + F+
Sbjct: 344 DGFTAGFYHSYWHIISTDVGREIRLFF 370
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,224,448
Number of Sequences: 2540612
Number of extensions: 15865130
Number of successful extensions: 54229
Number of sequences better than 10.0: 333
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 53841
Number of HSP's gapped (non-prelim): 372
length of query: 195
length of database: 863,360,394
effective HSP length: 121
effective length of query: 74
effective length of database: 555,946,342
effective search space: 41140029308
effective search space used: 41140029308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0023.13