BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.12
(152 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00499611.1| COG3210: Large exoproteins involved in heme u... 37 0.096
ref|ZP_00469638.1| COG3210: Large exoproteins involved in heme u... 37 0.096
ref|YP_102107.1| hypothetical protein BMA0281 [Burkholderia mall... 37 0.096
dbj|BAD37376.1| hypothetical protein [Oryza sativa (japonica cul... 36 0.21
emb|CAG10740.1| unnamed protein product [Tetraodon nigroviridis] 35 0.28
ref|XP_543874.1| PREDICTED: similar to synArfGEF [Canis familiaris] 35 0.37
gb|AAH67044.1| Gene model 1568 [Mus musculus] gi|56606029|ref|NP... 35 0.48
gb|AAF66419.1| flagellar autotomy protein Fa1p [Chlamydomonas re... 35 0.48
emb|CAF89724.1| unnamed protein product [Tetraodon nigroviridis] 35 0.48
ref|NP_035718.1| tripartite motif protein 28 [Mus musculus] gi|1... 34 0.62
emb|CAA67963.1| TIF1 beta protein [Mus musculus] gi|59807693|gb|... 34 0.62
gb|AAH58391.1| Tripartite motif protein 28 [Mus musculus] 34 0.62
gb|AAG50171.1| tripartite motif protein TRIM28 beta [Mus musculus] 34 0.62
gb|EAA52437.1| hypothetical protein MG05129.4 [Magnaporthe grise... 34 0.82
dbj|BAD31336.1| hypothetical protein [Oryza sativa (japonica cul... 34 0.82
gb|AAP52218.1| hypothetical protein [Oryza sativa (japonica cult... 33 1.1
ref|XP_237402.3| PREDICTED: similar to hypothetical protein FLJ4... 33 1.1
ref|XP_475599.1| hypothetical protein [Oryza sativa (japonica cu... 33 1.1
ref|NP_909863.1| hypothetical protein [Oryza sativa (japonica cu... 33 1.1
ref|XP_609854.1| PREDICTED: similar to mKIAA1403 protein, partia... 33 1.1
>ref|ZP_00499611.1| COG3210: Large exoproteins involved in heme utilization or adhesion
[Burkholderia pseudomallei S13]
gi|67754245|ref|ZP_00493157.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia pseudomallei Pasteur]
gi|67739179|ref|ZP_00489785.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia pseudomallei 668]
gi|67713791|ref|ZP_00483152.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia pseudomallei 1710b]
gi|67684229|ref|ZP_00478229.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia pseudomallei 1710a]
gi|67653368|ref|ZP_00450785.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia mallei SAVP1]
gi|67647370|ref|ZP_00445613.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia mallei NCTC 10247]
gi|67639774|ref|ZP_00438609.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia mallei GB8 horse 4]
gi|67634605|ref|ZP_00433575.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia mallei 10399]
gi|67629851|ref|ZP_00429709.1| COG3210: Large
exoproteins involved in heme utilization or adhesion
[Burkholderia mallei 10229]
Length = 140
Score = 37.0 bits (84), Expect = 0.096
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 2 ATTVQEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREV 59
A+++++A +K G+G A+ A+ ++A RT + GG+ F++ ++C +V
Sbjct: 75 ASSIKDALMSKLGAGVTSDSTYASGASGILDAGNGRTLDLSGGQSFKQQLTKQVCDKV 132
>ref|ZP_00469638.1| COG3210: Large exoproteins involved in heme utilization or adhesion
[Burkholderia pseudomallei 1655]
Length = 140
Score = 37.0 bits (84), Expect = 0.096
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 2 ATTVQEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREV 59
A+++++A +K G+G A+ A+ ++A RT + GG+ F++ ++C +V
Sbjct: 75 ASSIKDALMSKLGAGVTSDSTYASGASGILDAGNGRTLDLSGGQSFKQQLTKQVCDKV 132
>ref|YP_102107.1| hypothetical protein BMA0281 [Burkholderia mallei ATCC 23344]
gi|52208837|emb|CAH34776.1| putative exported protein
[Burkholderia pseudomallei K96243]
gi|52428150|gb|AAU48743.1| conserved hypothetical
protein [Burkholderia mallei ATCC 23344]
gi|53718423|ref|YP_107409.1| hypothetical protein
BPSL0784 [Burkholderia pseudomallei K96243]
Length = 157
Score = 37.0 bits (84), Expect = 0.096
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 2 ATTVQEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREV 59
A+++++A +K G+G A+ A+ ++A RT + GG+ F++ ++C +V
Sbjct: 92 ASSIKDALMSKLGAGVTSDSTYASGASGILDAGNGRTLDLSGGQSFKQQLTKQVCDKV 149
>dbj|BAD37376.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|51535733|dbj|BAD37750.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 161
Score = 35.8 bits (81), Expect = 0.21
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 12 KRGSGAAGTEAEAAAAAEGMEAATARTA--EAGGGEGFE----RSSRSRLCREVA--ECG 63
KR + A G + EAAAAA+G E + R EAG G G R R C +VA G
Sbjct: 60 KRPAAAVGKKEEAAAAADGAEVGSGRGGGEEAGSGGGVSGEDAAERRQRSCEDVASVHMG 119
Query: 64 QYINRYKSLLPLRVFVFTA 82
+ +SL R VF +
Sbjct: 120 RRRRSERSLRAWRSEVFAS 138
>emb|CAG10740.1| unnamed protein product [Tetraodon nigroviridis]
Length = 3070
Score = 35.4 bits (80), Expect = 0.28
Identities = 20/33 (60%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGGEG 46
G GAA A AAAAA G E A A A AGGG+G
Sbjct: 1158 GEGAAAAAAAAAAAAAG-EGAAAAAAAAGGGDG 1189
>ref|XP_543874.1| PREDICTED: similar to synArfGEF [Canis familiaris]
Length = 1389
Score = 35.0 bits (79), Expect = 0.37
Identities = 24/77 (31%), Positives = 34/77 (43%)
Query: 17 AAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAECGQYINRYKSLLPLR 76
AA TEAEAA A E + EA G+ ER S S + A+ G ++ S L+
Sbjct: 521 AALTEAEAAEAEEEETRDVGKGTEAEAGDNSERLSSSSTSTKSAKSGSEVSASASKEALQ 580
Query: 77 VFVFTAPSKRTAVKSSC 93
+ + P +SC
Sbjct: 581 AMILSLPRYHCENPASC 597
>gb|AAH67044.1| Gene model 1568 [Mus musculus] gi|56606029|ref|NP_001008423.1|
hypothetical protein LOC380768 [Mus musculus]
Length = 706
Score = 34.7 bits (78), Expect = 0.48
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 13/139 (9%)
Query: 10 QNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAECGQYINRY 69
+ K G+ G+E + A A+E +A A+ A + R AE G+
Sbjct: 8 EEKEGAEPGGSEGDEATASEPPDAQGAQQPAASSASASAAAPRKAEVPCGAEGGR--REQ 65
Query: 70 KSLLPLRVFVFTAP---SKRTAVKSSCHLNRCKRGAVKALFWCSVELDSLIVEAGSYLTN 126
LL L +F F P R + S L C R AVK + L+ A + L
Sbjct: 66 SPLLHLDLFNFACPEAEGSRYVLTSPRSLEACARCAVKPV--------ELLPRALADLVR 117
Query: 127 QDPNRSIELPNLFPALYEA 145
+ P RS+ + YEA
Sbjct: 118 EAPGRSMRVATGLYEAYEA 136
>gb|AAF66419.1| flagellar autotomy protein Fa1p [Chlamydomonas reinhardtii]
Length = 1787
Score = 34.7 bits (78), Expect = 0.48
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 15 SGAAGTEAEAAAAAEGMEAATARTAEAGGGEGF---ERSSRSRLCREVAECGQYINRYKS 71
+GAAG A A AA MEAA A A A G G RS L + + + + RY+S
Sbjct: 1698 AGAAGGAAAAMEAARAMEAAAALEAAAAGSAGLLGSRSDGRSGLGEDEEDIRELLARYRS 1757
>emb|CAF89724.1| unnamed protein product [Tetraodon nigroviridis]
Length = 132
Score = 34.7 bits (78), Expect = 0.48
Identities = 20/46 (43%), Positives = 24/46 (51%)
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREV 59
G G AG A AAAAA A A A AG G G E ++ R+ +V
Sbjct: 78 GGGGAGAAAAAAAAAAAAAAGAAAGAAAGAGAGAEGNNLVRMRSQV 123
>ref|NP_035718.1| tripartite motif protein 28 [Mus musculus]
gi|1621617|gb|AAB17272.1| KRAB-A interacting protein;
KRIP-1 [Mus musculus]
Length = 834
Score = 34.3 bits (77), Expect = 0.62
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 2 ATTVQEATQNKRGSG--AAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCRE 58
A T A GSG +AG E AA++ +A A + GGGE E +CRE
Sbjct: 13 AATAASAASGSPGSGEGSAGGEKRPAASSAAAASAAASSPAGGGGEAQELLEHCGVCRE 71
>emb|CAA67963.1| TIF1 beta protein [Mus musculus] gi|59807693|gb|AAH89337.1|
Tripartite motif protein 28 [Mus musculus]
gi|12275870|gb|AAG50170.1| tripartite motif protein
TRIM28 alpha [Mus musculus]
gi|3183181|sp|Q62318|TIF1B_MOUSE Transcription
intermediary factor 1-beta (TIF1-beta) (Tripartite
motif protein 28) (KRAB-A interacting protein) (KRIP-1)
gi|9944389|gb|AAG02638.1| transcriptional corepressor
TIF1beta [Mus musculus]
Length = 834
Score = 34.3 bits (77), Expect = 0.62
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 2 ATTVQEATQNKRGSG--AAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCRE 58
A T A GSG +AG E AA++ +A A + GGGE E +CRE
Sbjct: 13 AATAASAASGSPGSGEGSAGGEKRPAASSAAAASAAASSPAGGGGEAQELLEHCGVCRE 71
>gb|AAH58391.1| Tripartite motif protein 28 [Mus musculus]
Length = 834
Score = 34.3 bits (77), Expect = 0.62
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 2 ATTVQEATQNKRGSG--AAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCRE 58
A T A GSG +AG E AA++ +A A + GGGE E +CRE
Sbjct: 13 AATAASAASGSPGSGEGSAGGEKRPAASSAAAASAAASSPAGGGGEAQELLEHCGVCRE 71
>gb|AAG50171.1| tripartite motif protein TRIM28 beta [Mus musculus]
Length = 500
Score = 34.3 bits (77), Expect = 0.62
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 2 ATTVQEATQNKRGSG--AAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCRE 58
A T A GSG +AG E AA++ +A A + GGGE E +CRE
Sbjct: 13 AATAASAASGSPGSGEGSAGGEKRPAASSAAAASAAASSPAGGGGEAQELLEHCGVCRE 71
>gb|EAA52437.1| hypothetical protein MG05129.4 [Magnaporthe grisea 70-15]
gi|39940222|ref|XP_359648.1| hypothetical protein
MG05129.4 [Magnaporthe grisea 70-15]
Length = 2011
Score = 33.9 bits (76), Expect = 0.82
Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 7 EATQNKRGSGAAGTEAEAAAAAEGMEAA-TARTAEAGGGEGFERSSRSRLCREVAECGQ 64
EA NK AA EAE AAA E EAA A+ AE E R + RE E Q
Sbjct: 1059 EAAANKEAEEAAAREAEEAAAREAEEAAQAAKEAE----EAAAREAEEAAAREAEEAAQ 1113
>dbj|BAD31336.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 193
Score = 33.9 bits (76), Expect = 0.82
Identities = 21/48 (43%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAE 61
G G AG A+AA A G A AR E GGGE + R+ R+ AE
Sbjct: 113 GDGTAGRRADAAVGAAGGRPA-AREREGGGGEKWVRTGERERERKEAE 159
>gb|AAP52218.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37531258|ref|NP_919931.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|22655717|gb|AAN04134.1| Hypothetical protein [Oryza
sativa] gi|15341588|gb|AAK95680.1| Hypothetical protein
[Oryza sativa]
Length = 258
Score = 33.5 bits (75), Expect = 1.1
Identities = 24/86 (27%), Positives = 37/86 (42%)
Query: 6 QEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAECGQY 65
Q A + G A+G + EA A++E M AR E G +S +C EV E +
Sbjct: 58 QAARGREDGEKASGEDEEALASSERMRPLPARIVETWGAGAAAAASGEDVCGEVTEVAEG 117
Query: 66 INRYKSLLPLRVFVFTAPSKRTAVKS 91
R + RV + ++ A +S
Sbjct: 118 SGRRRERSRRRVRAQPSAARTLAGRS 143
>ref|XP_237402.3| PREDICTED: similar to hypothetical protein FLJ40243 [Rattus
norvegicus]
Length = 1693
Score = 33.5 bits (75), Expect = 1.1
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 16 GAAGTEAEAAAAAEGMEAAT---ARTAEAGGGEGFERSSRSRLCREVAECGQYINRYKSL 72
G+ + ++A AEGMEA T A E G FE S+ +C + + L
Sbjct: 1498 GSLQGQVSSSATAEGMEALTKVLAELREGDIGSSFEAISK--------QCRAFFDNESEL 1549
Query: 73 LPLRVFVFTAPSKRTAVKSSCHL--NRCKRGAVKALFWC 109
L L+ FV + S H KRG V L C
Sbjct: 1550 LRLKAFVLFGRLAKVVGISKKHFFKGEVKRGWVSLLLHC 1588
>ref|XP_475599.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|46485817|gb|AAS98442.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 482
Score = 33.5 bits (75), Expect = 1.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 15 SGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAECGQ 64
+G + T A A A + A+A + GGG R SR+R+C AE G+
Sbjct: 399 TGRSATTACARAGGAAIWVASAGSGGEGGGRSARRGSRARVCSARAEWGR 448
>ref|NP_909863.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|20303611|gb|AAM19038.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 266
Score = 33.5 bits (75), Expect = 1.1
Identities = 23/58 (39%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Query: 1 MATTVQEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEA----GGGEGFERSSRSR 54
++ +EA + +RG G EAAA G EAA AR A GGGE R R R
Sbjct: 90 VSAAAEEARRRRRGERGGGG-GEAAARQGGGEAAVARRARRRTRRGGGEAGRRQERRR 146
>ref|XP_609854.1| PREDICTED: similar to mKIAA1403 protein, partial [Bos taurus]
Length = 1029
Score = 33.5 bits (75), Expect = 1.1
Identities = 20/92 (21%), Positives = 42/92 (44%), Gaps = 7/92 (7%)
Query: 63 GQYINRYKSL------LPLRVFVFTAPSKRTAVKSSCHLNRCKRGAVKALFWCSVELDSL 116
G+++ ++L LP+ + +TAP + + GA++ WC V
Sbjct: 764 GEHVGALRALGLPLTQLPVSLECYTAPPEDNLALLQLYFRALVTGALRPR-WCPVLYAVA 822
Query: 117 IVEAGSYLTNQDPNRSIELPNLFPALYEATFI 148
+ S++ +QDPN S E+ ++ + T++
Sbjct: 823 VAHVNSFIFSQDPNNSDEIKAACRSMLQKTWL 854
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,923,958
Number of Sequences: 2540612
Number of extensions: 7847889
Number of successful extensions: 46076
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 45355
Number of HSP's gapped (non-prelim): 573
length of query: 152
length of database: 863,360,394
effective HSP length: 128
effective length of query: 24
effective length of database: 538,162,058
effective search space: 12915889392
effective search space used: 12915889392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0023.12