BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.23
(1569 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 401 e-110
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 317 2e-84
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 299 6e-79
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 293 3e-77
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 290 2e-76
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 289 5e-76
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 286 5e-75
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 281 1e-73
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 280 2e-73
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 274 2e-71
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 272 8e-71
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 271 1e-70
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 260 3e-67
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 251 1e-64
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 243 3e-62
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 240 3e-61
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 239 4e-61
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 236 4e-60
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 234 2e-59
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 233 3e-59
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 401 bits (1031), Expect = e-110
Identities = 270/813 (33%), Positives = 422/813 (51%), Gaps = 53/813 (6%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQNVVFKLDLE 862
TK+MV RL+ + +LIGP Q+SFIPGR +IDN +++Q+ VH M ++G+ ++ KLDLE
Sbjct: 382 TKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLE 441
Query: 863 KACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDP 922
KA V W FL++TL G S IM V+ S+S+LWNG + P+RGLR GDP
Sbjct: 442 KAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDP 501
Query: 923 LSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRK 982
LSPYLFVLC+ERL I+ +V + + + + +S GS +SH+ FADD++L A+A V+Q+R
Sbjct: 502 LSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRI 561
Query: 983 VQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQG 1042
++ +L FC ASG V++ KS+ F S +V R + I + I T L +YLG PI Q
Sbjct: 562 IRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQK 621
Query: 1043 RQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHL 1102
R +E F VL+RV+ + A WKGR L+ AG+ L K VL++IPV+ M + D L
Sbjct: 622 RMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTL 681
Query: 1103 DSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHD 1161
D ++ F+W S E++ ++++WR + PK GG+G+R AR +N +++ K+ W L+ +
Sbjct: 682 DRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKE 741
Query: 1162 KLWV*VLLDLY----CTNSDFLHAPRRRGSCVWNAV-MKTRDIIQDGFTWRIGRG-DLSF 1215
LW V+ Y ++ +L P+ R S W +V + R+++ G W G G + F
Sbjct: 742 SLWARVVRKKYKVGGVQDTSWL-KPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRF 800
Query: 1216 WFSKCHGSKALCEKVPYVHISDTALRV-RDVFQDGV---CDIRGLSTPITPELWALLQNL 1271
W + + L E + ++V D + G +I GL P T + L ++
Sbjct: 801 WLDRWLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVK--RRLLSV 858
Query: 1272 FVYVSLDDEDLVVWAPSLEGKYSVQSCYRWLL-DMEGGTAVSVDWA*LWKFQVPEKMKLF 1330
V V L + D + W + +G ++V+S Y L D+ + + +WK PE++++F
Sbjct: 859 VVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVF 918
Query: 1331 AWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNLCVSLTPG 1390
W + + T R ++ CS+C+ ET +H LRDC A +W+ L
Sbjct: 919 IWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHH 978
Query: 1391 FFTASSFLDWIASVPRHDVAGLL-----VHAWFIWCRRRRFVFAGELEPWR----LILHR 1441
F + S L+W+ + V G+ + W+ W R VF GE + R I
Sbjct: 979 EFFSQSLLEWLFT-NMDPVKGIWPTLFGMGIWWAWKWRCCDVF-GERKICRDRLKFIKDM 1036
Query: 1442 AADVLRC---------------------------LRATSPSMPAADPGRAEVGGVVRDAV 1474
A +V R ++ T+ + G A GG +R+
Sbjct: 1037 AEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQ 1096
Query: 1475 GCWLFGYSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLRHGVTRFH 1534
G WL G++ IG AEL +GL WD+GFR++ + D +V+ L GV+ H
Sbjct: 1097 GEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAH 1156
Query: 1535 VYAAIVGAIRELLRRDWRVELKHMLREGNVVAD 1567
+ +V + RDW V + H+ RE N +AD
Sbjct: 1157 PLSFLVRLCQGFFTRDWLVRVSHVYREANRLAD 1189
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 317 bits (812), Expect = 2e-84
Identities = 220/744 (29%), Positives = 353/744 (46%), Gaps = 33/744 (4%)
Query: 804 KVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHM-NSRRGKCQNVVFKLDLE 862
KV+ NRL++ L ++I P QS+F+PGR DN +I ++ H+M N R G+ FKLD+
Sbjct: 720 KVLANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMS 779
Query: 863 KACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDP 922
KA V W+FL D + GF V+LIM CVS+ + + NG +P RGLR GDP
Sbjct: 780 KAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDP 839
Query: 923 LSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRK 982
LSPYLF+LC E + + ++ + +RI + +SHL FADD L+L +A + ++
Sbjct: 840 LSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQ 899
Query: 983 VQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQG 1042
+Q IL + SG +N KS S + +K + ++ E+YLG P+F G
Sbjct: 900 LQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVG 959
Query: 1043 RQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHL 1102
R + F ++ +R+ ++ WK +LL++AGK IL K V IP + M F +CD +
Sbjct: 960 RSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQI 1019
Query: 1103 DSLAKNFIWSRGER-RGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHD 1161
+ + WS E+ M+ ++W +TLPK GGLG R + N +ML K W L+ D
Sbjct: 1020 SKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPD 1079
Query: 1162 KLWV*VLLDLYCTNSD-FLHAPRRRGSCVWNAVMKTRDIIQDGFTWRIGRGDLSFWFSKC 1220
L VL Y D F S W ++ K ++Q+G WR+G G ++
Sbjct: 1080 SLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADP 1139
Query: 1221 HGSKALCEKVPYVHISDTALRVRDVFQ--DGVCDIRGLSTPITPELWALLQNLFVYVSLD 1278
+ K ++ +V ++ G D LS E A ++++ V+V +
Sbjct: 1140 WIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEM- 1198
Query: 1279 DEDLVVWAPSLEGKYSVQSCYRWLLDME------GGTAVS-------VDWA*LWKFQVPE 1325
ED++ W G ++V+S Y+ +ME G VS W LWK VP
Sbjct: 1199 -EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPG 1257
Query: 1326 KMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNLCV 1385
K+K F W+ H +L H RG+ + C +C + E H C +VWQ L +
Sbjct: 1258 KIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNL 1317
Query: 1386 ----SLTPGFFTASSFLDWIASVPRHDVAGLLVHAWFIWCRR--RRFVFAGELEPWRLIL 1439
S+ + + L I P ++ +V W W R + GE WR
Sbjct: 1318 EELRSMLEQQTSGKNVLQSIYCRPENERTSAIVCLWQWWKERNEEKSPRTGECAVWR--- 1374
Query: 1440 HRAADVLRCLRATSPSMPAADPGRAEVGGVVRDAVGCWLFGYSGFIG-MAEILKAELLAV 1498
L ++ + +++ + G V+RD G L +G + + AE++A
Sbjct: 1375 ---RPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVAC 1431
Query: 1499 LFGLQSCWDRGFRQLVVSSDSMVV 1522
+++ +RG ++ + +DSM++
Sbjct: 1432 AAAIKTASERGMSRIELETDSMML 1455
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 299 bits (765), Expect = 6e-79
Identities = 246/850 (28%), Positives = 379/850 (43%), Gaps = 112/850 (13%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQNVV--FKLD 860
+K +VNRLR L EL+ P QS+F+PGR DNAI+ + H + R K +N +KLD
Sbjct: 34 SKCLVNRLRPILDELVSPCQSAFVPGRMITDNAILAFECFHSIQKNR-KPENAACAYKLD 92
Query: 861 LEKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*G 920
+ KA V W FL GF V I+ C+++ S+ +NG L APSRGL G
Sbjct: 93 ISKAYDRVDWGFLE-----LGFAHRWVRWIIVCITTVRYSVKFNGTLLSTFAPSRGLCQG 147
Query: 921 DPLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQV 980
PLSP+LF+ + L + ++D V Q V+I R ISHL FADD LL KA Q
Sbjct: 148 VPLSPFLFLFIADGLPLLLEDKVAQGALSPVKICRQAPGISHLLFADDTLLFFKADNVQA 207
Query: 981 RKVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIF 1040
+ V+ ++ D+ +A+G +N AK S P + I V I + +RYLGFP
Sbjct: 208 QAVKEVITDYALATGQLINPAKCSIMFGESSPPQTRDVIRVTLQIANSGFEDRYLGFPTP 267
Query: 1041 QGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCD 1100
+GR + F + +R+ ++ W LL+ GK +L K V+ IPVY M +F +VC+
Sbjct: 268 EGRMCKGKFQSLQERIWKRLIIWGENLLSSGGKEVLIKSVIQTIPVYVMGIFNLPESVCE 327
Query: 1101 HLDSLAKNFIW--SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVN 1158
L L +NF W +G+R+ + +W +T PK NGGLG R RL N ++L + W L+
Sbjct: 328 ELTKLTRNFWWGVEKGKRK-THWKSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIV 386
Query: 1159 SHDKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRG-DLSFW 1216
+ D L VL Y N + S VW A+ ++++G WRIG G + W
Sbjct: 387 NPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEYGLSLLKEGIIWRIGNGKSVRIW 446
Query: 1217 FSKCHGSKALCEKVPYVHISDTALRVRDVFQDGVCDIRGLSTPITPE-LWALLQNLFVYV 1275
+ P++ R + + G C ++ +S ++ W + V++
Sbjct: 447 ------------RDPWL---PRDFSRRPITRKGNCRLKWVSELLSENGAWDETRVNQVFL 491
Query: 1276 SLD-------------DEDLVVWAPSLEGKYSVQSCYRW---LLDMEGGTAVSVD----- 1314
+D ++D V W P GK+SV+S Y L++ME ++ S
Sbjct: 492 PVDAEAICSIRVSSRQEDDFVAWHPDKHGKFSVRSAYGLACNLVNMETSSSSSSARCKRM 551
Query: 1315 WA*LWKFQVPEKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCD 1374
W +W+ P+K+++FAW+AA L T++ R + C +C E H L C
Sbjct: 552 WNLIWQTNAPQKVRIFAWRAATNCLATMENKAKRKLEQSDICLVCGLEKEDTKHVLCRCP 611
Query: 1375 ASLQVWQNLC----VSLTPGFFTASS--FLDWIASVPRHDVAGLLVHAWFIWCRRRRFVF 1428
+ +W +C +SL G D + + ++ L+ W IW R V
Sbjct: 612 DARNLWGAMCEAGNISLNGGNLCNDPGWIFDQLEILLDYERTVFLLILWRIWFVRNEIVH 671
Query: 1429 AGELEP---------------WRLILHRAADVLRCLRATS----PSMPAADP-------- 1461
+ P + H A+V + S + PA P
Sbjct: 672 GKQPPPIEASKRFLESYVKSLLEIRQHPQANVEKGKHVISFVNGKTNPARRPPEDKNQKW 731
Query: 1462 --------------------GRAEVGGVVRDAVGCWLFGYSGFI-GMAEILKAELLA--- 1497
G +G V+RD G +F + L++E+LA
Sbjct: 732 RKPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSGKVIFACCKHLPRCGSALESEILACKE 791
Query: 1498 -VLFGLQSCWDRGFRQLVVSSDSMVVLSLLRHGVTRFHVYAAIVGAIRELLRRDWRVELK 1556
+L GLQ W RQ VV +D ++V+ +L A +V ELL D ++L+
Sbjct: 792 GILVGLQ--W--SLRQFVVETDCLMVVQMLESKEREMSEVAFLVKEATELLSGDREIQLR 847
Query: 1557 HMLREGNVVA 1566
+ R N V+
Sbjct: 848 KIHRSQNSVS 857
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 293 bits (750), Expect = 3e-77
Identities = 241/835 (28%), Positives = 369/835 (43%), Gaps = 83/835 (9%)
Query: 804 KVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQN--VVFKLDL 861
K+M NRL++ L LI Q++F+ GR DN +I +++H ++S KC + K D+
Sbjct: 519 KLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNN-KCSEEFIAIKTDI 577
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W FL + GF + LIM CV S +L NG I PSRGLR GD
Sbjct: 578 SKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGD 637
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVR 981
PLSPYLFV+C E L +Q A +NQ ++++R PISHL FADD + K +
Sbjct: 638 PLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALG 697
Query: 982 KVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFP-IF 1040
++ I+ ++ +ASG VN KS + + ++ + I YLG P F
Sbjct: 698 QIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESF 757
Query: 1041 QGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCD 1100
QG + ++ DR+ +K W+ L+ GK IL K V A+P Y M F +C
Sbjct: 758 QGSKVAT-LSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQ 816
Query: 1101 HLDSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNS 1159
++S+ F W ++ E RG++ AW ++ PK GGLG ++ N ++LGK +W ++
Sbjct: 817 QIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITE 876
Query: 1160 HDKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRGD-LSFWF 1217
D L V Y + SD L+AP R S W ++ + + +I+ G IG G+ ++ W
Sbjct: 877 KDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWT 936
Query: 1218 SKCHGSKALCEKVPYVHISDTALRVRDVFQDGVCDIRGLSTPITPE----LWALLQNLFV 1273
G+K + R V Q I + + P+ W L+ LF
Sbjct: 937 DPWIGAKP-------AKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFP 989
Query: 1274 YVSLDD-----------EDLVVWAPSLEGKYSVQSCYRWLL--------DMEGGTAVSVD 1314
+ ++ D W S G YSV+S Y W++ + + S+D
Sbjct: 990 DNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGY-WVMTEIINQRNNPQEVLQPSLD 1048
Query: 1315 --WA*LWKFQVPEKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRD 1372
+ +WK VP K+ F W+ + L R +A + C C H ET H L
Sbjct: 1049 PIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFK 1108
Query: 1373 CDASLQVWQNLCVSLTPGFFTASSF---LDWIASVPRHDVAGLLVHA------WFIWCRR 1423
C + W + PG A S + + SV + HA W +W R
Sbjct: 1109 CPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNR 1168
Query: 1424 RRFVFAG-ELEPWRLILHRAADV------------------LRCLRATSPSMP------- 1457
VF G E ++IL D+ RC++ PS
Sbjct: 1169 NDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTD 1228
Query: 1458 ---AADPGRAEVGGVVRDAVG--CWLFGYSGFIGMAEILKAELLAVLFGLQSCWDRGFRQ 1512
+ D G VG V+R+ G WL G +L+ E+ A+ + + S +R+
Sbjct: 1229 GAWSKDLGNCGVGWVLRNHTGRLLWL-GLRALPSQQSVLETEVEALRWAVLSLSRFNYRR 1287
Query: 1513 LVVSSDSMVVLSLLRHGVTRFHVYAAIVGAIRELLRRDWRVELKHMLREGNVVAD 1567
++ SDS ++SL+++ + A + IR LLR V+ + REGN VAD
Sbjct: 1288 VIFESDSQYLVSLIQNEMD-IPSLAPRIQDIRNLLRHFEEVKFQFTRREGNNVAD 1341
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 290 bits (743), Expect = 2e-76
Identities = 236/815 (28%), Positives = 374/815 (44%), Gaps = 69/815 (8%)
Query: 804 KVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMN-SRRGKCQNVVFKLDLE 862
K++ RL+ +L ELI QS+F+PGR DN +I +I+H + S K ++ K D+
Sbjct: 460 KILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMS 519
Query: 863 KACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDP 922
KA + W FL++ L GF + +M CV + S S L NG + PSRGLR GDP
Sbjct: 520 KAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDP 579
Query: 923 LSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRK 982
LSPYLF+LC E L+ + A ++ +R++R ++HL FADD + K +
Sbjct: 580 LSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGA 639
Query: 983 VQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQG 1042
+ NIL + +ASG ++N+AKS S P+ K + + I + +YLG P G
Sbjct: 640 LSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFG 699
Query: 1043 RQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHL 1102
R+ ++ F ++DR+ ++ SW R L+ AGK IL K VL+++P Y M F ++C +
Sbjct: 700 RRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQI 759
Query: 1103 DSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHD 1161
S+ F W S+ ++R M V+W +TLP GGLG R+ KL W ++
Sbjct: 760 QSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPH 812
Query: 1162 KLWV*VLLDLYCTNSDFL--HAPRRRGSCVWNAVMKTRDIIQDGFTWRIGRGD-LSFWFS 1218
L VLL YC S F+ A S W ++ RD+++ G W IG+GD ++ W
Sbjct: 813 SLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTE 872
Query: 1219 KCHGSKALCEKVPYVHISDTALRVRDV-FQDGVC-DIRGLSTPI----TPELWALLQNLF 1272
L P I +D+ D +C D++ + P+ ++ +
Sbjct: 873 AW-----LSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQYEDQIRKIT 927
Query: 1273 VYVSLDDEDLVVWAPSLEGKYSVQSCYRWLLDMEGGTAVSVDW---A*LWKFQVPEKMKL 1329
+ +L +D +VW P G+Y+ ++ Y L + A +D+ +WK K+K
Sbjct: 928 IN-ALPLQDSLVWLPVKSGEYTTKTGYA-LAKLNSFPASQLDFNWQKNIWKIHTSPKVKH 985
Query: 1330 FAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNLCVSLTP 1389
F W+A +LP + R + C C E+ +H + C + +VW+ V P
Sbjct: 986 FLWKAMKGALPVGEALSRRNIEAEVTCKRC-GQTESSLHLMLLCPYAKKVWELAPVLFNP 1044
Query: 1390 GFFTASSF------LDWIASVPRHDVAGLLVHAWF---IWCRRRRFVFAG---------- 1430
T SS + ++P + ++ W +W R R +F
Sbjct: 1045 SEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVL 1104
Query: 1431 ----ELEPW---RLILHRAADV------LRCLRATSPSMPAA--DPGRAEVGGVVRDAVG 1475
+ W +L++H + + L+ TS + AA G +G ++D
Sbjct: 1105 KAILDARAWMEAQLLIHHPSPISDYPSPTPNLKVTSCFVDAAWTTSGYCGMGWFLQDPYK 1164
Query: 1476 CWL---FGYSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLRHGVTR 1532
+ S F+G A L AE LAV L G RQL V SD ++SLL G +
Sbjct: 1165 VKIKENQSSSSFVGSA--LMAETLAVHLALVDALSTGVRQLNVFSDCKELISLLNSGKSI 1222
Query: 1533 FHVYAAIVGAIRELLRRDWRVELKHMLREGNVVAD 1567
+ ++ IREL + + R NVVAD
Sbjct: 1223 VEL-RGLLHDIRELSVSFTHLCFFFIPRLSNVVAD 1256
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 289 bits (740), Expect = 5e-76
Identities = 200/664 (30%), Positives = 308/664 (46%), Gaps = 47/664 (7%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMN-SRRGKCQNVVFKLDL 861
+K +VNRLR L +L+ QS+F+ GR DNA++ + H M +++ +KLDL
Sbjct: 1252 SKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDL 1311
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W FL + GF V+ IM CV+S + +NG L AP+RGLR GD
Sbjct: 1312 SKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGD 1371
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVR 981
PL P+LF+ + L++ +++ V QN ++ R ISHL FADD LL KA +
Sbjct: 1372 PLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAE 1431
Query: 982 KVQNILADFCMASGLNVNIAK-SRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIF 1040
V+ +L+ + M +G +N AK S S P +A I + + +RYLGFP
Sbjct: 1432 VVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEA-ISEILQVERDRFEDRYLGFPTP 1490
Query: 1041 QGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCD 1100
+GR + F + ++ ++ W L+ GK +L K V+ AIPVY M +F +V D
Sbjct: 1491 EGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVID 1550
Query: 1101 HLDSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNS 1159
L L KNF W S +R + AW ++T PK GGLG R RL N ++L + W L+
Sbjct: 1551 DLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITY 1610
Query: 1160 HDKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRGD-----L 1213
D L VL Y + + S W ++ D+++ G WR+G G+
Sbjct: 1611 PDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWR 1670
Query: 1214 SFWFSKCHGSKALCEKV--PYVHISDTALRVRDVFQDGVCDIRGLSTPITPELWALLQNL 1271
W + H + + K +SD + +DG D+ P++ NL
Sbjct: 1671 DSWLPRDHSRRPITGKANCRLKWVSDL------ITEDGSWDV--------PKIHQYFHNL 1716
Query: 1272 FVYVSLD-------DEDLVVWAPSLEGKYSVQSCYR---WLLDME-----GGTAVSVDWA 1316
V L+ +ED + W P G +SV+S YR L+++E G ++ W
Sbjct: 1717 DAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWE 1776
Query: 1317 *LWKFQVPEKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDAS 1376
+WK +VP+K+K+FAW+ A L T+ R + C +C E H L C +
Sbjct: 1777 MIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQA 1836
Query: 1377 LQVWQ------NLCVSLTPGFFTASSFLDWIASVPRHDVAGLLVHAWFIWCRRRRFVFAG 1430
Q+W ++ V + D + +P ++ A L+ W W R +
Sbjct: 1837 SQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGK 1896
Query: 1431 ELEP 1434
P
Sbjct: 1897 SAPP 1900
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 286 bits (731), Expect = 5e-75
Identities = 221/787 (28%), Positives = 357/787 (45%), Gaps = 64/787 (8%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMN-SRRGKCQNVVFKLDL 861
+K +VNRLR L +L+ QS+FI GR DNA++ + H + +++ +KLDL
Sbjct: 1158 SKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDL 1217
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W FL L GF VS IM CV++ S+ +NG L AP+RGLR G+
Sbjct: 1218 SKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGE 1277
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVR 981
PLSP+LF+ + L++ +++ V QN ++I R IS+L FADD LL KA+ +
Sbjct: 1278 PLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAE 1337
Query: 982 KVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQ 1041
V+ +L ++ +G +N AK + P + DI + +RYLGFP +
Sbjct: 1338 VVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPE 1397
Query: 1042 GRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDH 1101
GR + F + ++ ++ W L+ GK IL K V+ AIPVY M LF F +V D
Sbjct: 1398 GRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDE 1457
Query: 1102 LDSLAKNFIWSRGE-RRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSH 1160
L + +NF W RR + AW ++T K NGGLG R +L N ++L + W L+
Sbjct: 1458 LTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFP 1517
Query: 1161 DKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRGD-LSFW-- 1216
+ L VL Y + S W+ + D+++ G WRIG G+ + W
Sbjct: 1518 NSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRD 1577
Query: 1217 -------FSKCHGSKALCEKVPYVHISDTALRVRDVFQDGVCDIRGLSTPITPELWALLQ 1269
+ SKA C +SD + +DG D ++ ++Q
Sbjct: 1578 PWIPRDLSRRPVSSKANCR---LKWVSDL------IAEDGTWDSAKINQYFLKIDADIIQ 1628
Query: 1270 NLFVYVSLDDEDLVVWAPSLEGKYSVQSCYRWLLDM--------EGGTAVSVDWA*LWKF 1321
+ + L +ED + W P G++SV+S Y+ L + + ++ W +WK
Sbjct: 1629 KICISARL-EEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKC 1687
Query: 1322 QVPEKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQ 1381
VP+K+++FAW+ A SL T++ R + C +C E H L C + +W
Sbjct: 1688 NVPQKVRIFAWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSLW- 1746
Query: 1382 NLCVSLTPGFFTASSFLDWIASVPRHDVAGLLVHAWFIWCRRRRFVFAGELEPW-RLILH 1440
V+L G + S +++ + G W R R W +L +
Sbjct: 1747 ---VNLEKGKYVVS--VNFPKTTAIKHTPGAENRRW----ERPR-------NGWMKLNVD 1790
Query: 1441 RAADVLRCLRATSPSMPAADPGRAEVGGVVRDAVGCWLFGYSGFI-GMAEILKAELLAVL 1499
+ D+ + + +G ++R+ +G +F + + L+AEL A +
Sbjct: 1791 GSFDI--------------NSEKGGIGMILRNCLGNVIFSSCRSLDSCSGPLEAELHACV 1836
Query: 1500 FGLQSCWDRGFRQLVVSSDSMVVLSLLRHGVTRFHVYAAIVGAIRELLRRDWRVELKHML 1559
GL + V +D V+ LL H V A I + L+ D ++ + +
Sbjct: 1837 EGLHLALHWTLLPIQVETDCSSVIQLLNHPDKDRSVLANIAQEAKSLMAGDRQIAISKVQ 1896
Query: 1560 REGNVVA 1566
R NV++
Sbjct: 1897 RSQNVIS 1903
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 281 bits (719), Expect = 1e-73
Identities = 224/819 (27%), Positives = 355/819 (42%), Gaps = 57/819 (6%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQNVVFKLDLE 862
+KV+ NRL+ FL +++ QS+F+PGR D+A++ + +H + + K K+D+
Sbjct: 534 SKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKIDMM 593
Query: 863 KACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDP 922
KA V WA+L L GF ++ +M CVSS ++ NG P+ PSRG+R GDP
Sbjct: 594 KAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDP 653
Query: 923 LSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRK 982
+SPYLF+LC E L+ + + + ++ R G PISHL FADD + AKA V+
Sbjct: 654 ISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQA 713
Query: 983 VQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQG 1042
++N L +C ASG +N+ KS F P A K + + + YLG P G
Sbjct: 714 LKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIG 773
Query: 1043 RQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHL 1102
T F F+ +R+ ++ W R L++AG + K V AIP Y M F ++C+ +
Sbjct: 774 LATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKM 833
Query: 1103 DSLAKNFIWS-RGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHD 1161
+ + W ++ M+ +W ++ PK GG+G R+ N +MLG+ W L+ D
Sbjct: 834 KTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPD 893
Query: 1162 KLWV*VLLDLYCTNSDFLHAPRRRG-SCVWNAVMKTRDIIQDGFTWRIGRGDLSFWFSKC 1220
L VL Y NS F A + + S W +++ R+++ G W +G G FS
Sbjct: 894 SLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDN 953
Query: 1221 HGSKALCEKVPYVHISDTALRVRDVF-QDGVCDIRGLSTPITPELWALLQNLFVYVSL-D 1278
+ V + T V + +D C L + P + + L + +S
Sbjct: 954 WIPGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFP-VDIAKEILQIPISRHG 1012
Query: 1279 DEDLVVWAPSLEGKYSVQSCYR------WLLDMEG---GTAVSV-----DWA*LWKFQVP 1324
D D W G YSV+S Y + D G A + DW LWK P
Sbjct: 1013 DADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAP 1072
Query: 1325 EKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNL- 1383
KMK+ W+AAH L T R + C C+ +T H C + Q+W+ +
Sbjct: 1073 GKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIK 1131
Query: 1384 ---CVSL-TPGFFTASSFL-DWIASVPRHDVAGLLVHAWFIW-CRRRRFVFAGELEPWRL 1437
V L GF T ++ D++ H L V W IW R G + P R+
Sbjct: 1132 GKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRV 1191
Query: 1438 ILHRAADVLRCLRATSPSMPAADPGRAE-----------------------------VGG 1468
++ + V L+ + ++ G + VG
Sbjct: 1192 VIKILSYVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGA 1251
Query: 1469 VVRDAVGCWLFGYSGFIGMAEILK-AELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLR 1527
++RD G L S I + + AE LA+ L + G +V++SD + V+ ++
Sbjct: 1252 LIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQ 1311
Query: 1528 HGVTRFHVYAAIVGAIRELLRRDWRVELKHMLREGNVVA 1566
++ I++L H+ R N+ A
Sbjct: 1312 TSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAA 1350
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 280 bits (717), Expect = 2e-73
Identities = 182/547 (33%), Positives = 289/547 (52%), Gaps = 41/547 (7%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQNVVFKLDLE 862
TK+MV RL+ + +LIGP Q+SFIPGR + DN +++Q+ VH M ++G+ ++ KLDLE
Sbjct: 334 TKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLE 393
Query: 863 KACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDP 922
KA + W FL +TL G + IM CV+ +SLLWNG K P RGLR GDP
Sbjct: 394 KAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDP 453
Query: 923 LSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRK 982
+SPYLFVLC+ERL I+ AV + + + IS+ G +SH+ FADD++L A+A V+Q
Sbjct: 454 ISPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASVAQ--- 510
Query: 983 VQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQG 1042
V++ KS+ F S +V R + I T I T L +YLG P+ Q
Sbjct: 511 --------------KVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQK 556
Query: 1043 RQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHL 1102
R ++ F VL+RV+ + + WK R L+ AG+ L K VL +IP++ M ++ + L
Sbjct: 557 RINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQL 616
Query: 1103 DSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHD 1161
D +++NF+W S E+R ++++W+ V PK GGLG+R ++ +N ++L K+ W L+N
Sbjct: 617 DKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKV 676
Query: 1162 KLWV*VLLDLY----CTNSDFLHAPRRRGSCVWNAV-MKTRDIIQDGFTWRIGRGDLSFW 1216
LW VL Y +S +L P+ S W ++ + R+ + G W +
Sbjct: 677 SLWARVLRRKYKVTDVHDSSWL-VPKATWSSTWRSIGVGLREGVAKG--WILHE------ 727
Query: 1217 FSKCHGSKALCEKVPYVHISDTALRVRDVFQDGV-CDIRGLSTPITPELWALLQNLFVYV 1275
C ++A C P + RV + + +GV D+ L + + L + +
Sbjct: 728 -PLC--TRATCLLSP----EELNARVEEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKG 780
Query: 1276 SLDDEDLVVWAPSLEGKYSVQSCYRWLL-DMEGGTAVSVDWA*LWKFQVPEKMKLFAWQA 1334
L D + W + +G ++V S Y L + E + + +W PE++++F W
Sbjct: 781 VLGLRDRISWQGTSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAPERVRVFLWLV 840
Query: 1335 AHRSLPT 1341
+ + T
Sbjct: 841 GQQVIMT 847
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 274 bits (700), Expect = 2e-71
Identities = 201/657 (30%), Positives = 306/657 (45%), Gaps = 23/657 (3%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRG-KCQNVVFKLDL 861
+K++ RL+ L LI QS+F+ GR DN +I Q++ H + + K + + K D+
Sbjct: 302 SKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDM 361
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W F+ L GF +S IM+C+++ +L NG I P RGLR GD
Sbjct: 362 SKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGD 421
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVR 981
PLSPYLF+LC E L +I+ A QN ++++ +SHL FADD L KA Q
Sbjct: 422 PLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCG 481
Query: 982 KVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQ 1041
+ IL + SG +N +KS V + KADI ++ I + YLG P
Sbjct: 482 IILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESL 541
Query: 1042 GRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDH 1101
G + F FV DR+ + W + L+K GK ++ K V +P Y M F A+
Sbjct: 542 GGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSK 601
Query: 1102 LDSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSH 1160
L S F W S G+ RGM+ +AW + K +GGLG R N+++L K +W L+ +
Sbjct: 602 LTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAP 661
Query: 1161 DKLWV*VLLDLYCTNSDFLHAPRRRG-SCVWNAVMKTRDIIQDGFTWRIGRG-DLSFWFS 1218
D L+ V Y S+ L + + S W +++ R ++ G R+G G +S W
Sbjct: 662 DSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWND 721
Query: 1219 KCHGSKALCEKVPYVHISDTALRVRDVF--QDGVCDIRGLSTPITPELWALLQNLFVYVS 1276
++ I D +L+V+ + + +I L PE L+ L + +
Sbjct: 722 PWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPI-GN 780
Query: 1277 LDDEDLVVWAPSLEGKYSVQSCYRWL-LDM-EGGTAVSVDW----A*LWKFQVPEKMKLF 1330
+ ED + W + G Y+V+S Y LD+ EG T + D A +WK Q P K++ F
Sbjct: 781 PNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHF 840
Query: 1331 AWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNLCVSLTPG 1390
WQ +P + RG+ + C C E+ H L C + Q+W + PG
Sbjct: 841 LWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPG 900
Query: 1391 FFTASSF------LDWIASVPRH-DVAGLLVHAWFIWCRRRRFVFAG-ELEPWRLIL 1439
F ++S L W +P D A W+IW R VF + +P ++L
Sbjct: 901 IFPSNSIFTNLDHLFW--RIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEILL 955
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 272 bits (695), Expect = 8e-71
Identities = 187/594 (31%), Positives = 289/594 (48%), Gaps = 27/594 (4%)
Query: 804 KVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQ-NVVFKLDLE 862
K+M R++ L +LI QS+F+PGR DN +I +++H + + K ++ K D+
Sbjct: 414 KIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMS 473
Query: 863 KACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDP 922
KA V W FL+ L FGF + ++ CV+S S S L NG + P+RGLR GDP
Sbjct: 474 KAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDP 533
Query: 923 LSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRK 982
LSP LF+LC E L+ A Q VR+S +G ++HL FADD + +K+ K
Sbjct: 534 LSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNK 593
Query: 983 VQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQG 1042
+ IL+ + ASG ++N KS S PR+ K + + I +YLG P G
Sbjct: 594 LSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFG 653
Query: 1043 RQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHL 1102
R+ ++ F ++D++ +K SW R L++AGK ++ K VL ++P+Y M F A+C +
Sbjct: 654 RRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKI 713
Query: 1103 DSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHD 1161
SL F W ++ + R + VAW +T PK GGLG R N S+L KL W L+NS +
Sbjct: 714 QSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPE 773
Query: 1162 KLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRGD-LSFWFSK 1219
L +LL YC +S F+ + S W +++ R+I+++G W I G+ +S W
Sbjct: 774 SLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIW--- 830
Query: 1220 CHGSKALCEKVPYVHISDTALRVRDVFQDGVCDIRGLS------TPITPELWALLQNLFV 1273
L P V I +D+ + + L I P L++ L
Sbjct: 831 --NDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPNYENLIKQL-P 887
Query: 1274 YVSLDDEDLVVWAPSLEGKYSVQSCYRWLLDMEGGTAVSV-----DW-A*LWKFQVPEKM 1327
S D + W P G+Y+ +S Y + ++ + +W + LWK Q K+
Sbjct: 888 APSSRGVDKLAWLPVKSGQYTSRSGY----GIASVASIPIPQTQFNWQSNLWKLQTLPKI 943
Query: 1328 KLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQ 1381
K W+AA +LP R ++ C C T H C+ + QVW+
Sbjct: 944 KHLMWKAAMEALPVGIQLVRRHISPSAACHRCGAPEST-THLFFHCEFAAQVWE 996
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 271 bits (694), Expect = 1e-70
Identities = 182/571 (31%), Positives = 275/571 (47%), Gaps = 32/571 (5%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQNV--VFKLD 860
+K +VNRLR L +L+ QS+F+PGR DNA+I + HH+ + +N +KLD
Sbjct: 1132 SKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNP-ENAYSAYKLD 1190
Query: 861 LEKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*G 920
L KA V W FL + GF V IM C++ ++ NG L APSRGLR G
Sbjct: 1191 LSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQG 1250
Query: 921 DPLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQV 980
DPLSP+LF+ + L+ +++ VDQ + I R + HL FADD L KA Q
Sbjct: 1251 DPLSPFLFLFVADGLSFLLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQA 1310
Query: 981 RKVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIF 1040
++ +L + +G +N +K S P A + I I + ++YLGFP
Sbjct: 1311 VVMKEVLETYASCTGQLINPSKCSIMFGQSSPTAVQNQIKQTLQISNSFE-DKYLGFPTP 1369
Query: 1041 QGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCD 1100
+GR T+ F + +R+ ++ W + L+ GK IL K VL A+PVY M LF +VC+
Sbjct: 1370 EGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCE 1429
Query: 1101 HLDSLAKNFIWSRGERRGMNMVAWRT---VTLPKCNGGLGIRKARLINTSMLGKLVWDLV 1157
L L +NF W G +GM W++ + K GG+G R RL N ++L + W L+
Sbjct: 1430 ELTKLVRNFWW--GAEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLL 1487
Query: 1158 NSHDKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRGD---- 1212
+ D L +L +Y N + S W A+ ++++ G WRIG G
Sbjct: 1488 DRPDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRL 1547
Query: 1213 -LSFWFSKCHGSKALCEKVPYVHISDTALR-VRDVF-QDGVCDIRGLSTPITPELWALLQ 1269
W + + + + K + LR V D+ Q G D +S P +
Sbjct: 1548 WRDPWIPRSYSRRPISAK------RNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAIL 1601
Query: 1270 NLFVYVSLDDEDLVVWAPSLEGKYSVQSCYRWLLDM--------EGGTAVSVDWA*LWKF 1321
N+ + L+D D + W P G++SV+S Y + + G S W LWK
Sbjct: 1602 NIRLSSRLED-DFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKC 1660
Query: 1322 QVPEKMKLFAWQAAHRSLPTVDTFHDRGVAI 1352
P+K+K+FAW+A SLPT++ R + +
Sbjct: 1661 NAPQKVKIFAWRAITNSLPTLENKKKRKLEV 1691
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 260 bits (664), Expect = 3e-67
Identities = 184/594 (30%), Positives = 278/594 (45%), Gaps = 33/594 (5%)
Query: 804 KVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQNV-VFKLDLE 862
K +VNRLR LQE+I QS+F+PGR DNA++ + H ++ + Q+ KLDL
Sbjct: 507 KCLVNRLRPLLQEIISETQSAFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLS 566
Query: 863 KACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDP 922
KA V W FL L GF IM CV+S S+ NG L P P+RGLR GDP
Sbjct: 567 KAYDRVDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDP 626
Query: 923 LSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRK 982
L+PYLF+ + L+ +Q D+ Q + +++ R +SHL FADD LL KA+V Q +
Sbjct: 627 LNPYLFLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATR 686
Query: 983 VQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQG 1042
++ L + +G +N + S P+ ++ I V + T ++ LG P G
Sbjct: 687 IKEALDLYERCTGQLINPKECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDG 746
Query: 1043 RQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHL 1102
R E F + +R ++ W R L+ AGK L K V A+P Y M +F C+
Sbjct: 747 RMKAEQFQPIKERFEKRLTDWSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEY 806
Query: 1103 DSLAKNFIW--SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSH 1160
+ L +NF W +GE++ ++ +AW +T PK GGLG R R N ++L + W L+ S
Sbjct: 807 EQLVRNFWWGHEKGEKK-VHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESP 865
Query: 1161 DKLWV*VLLDLYCTNSDFLH-APRRRGSCVWNAVMKTRDIIQDGFTWRIGRGD-----LS 1214
D L VL Y N A S W ++ ++++ G WRIG G +
Sbjct: 866 DSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRN 925
Query: 1215 FWFSKCHGSKALCEKVPYVHISDTALRVRDVFQDGVCDIRGLSTPITPELWA---LLQNL 1271
W + K L +K + + VR++ V D + + P+ + + L
Sbjct: 926 HWVAHGENLKILEKKT-----WNRVIYVRELI---VTDTKTWNEPLIRHIIREEDADEIL 977
Query: 1272 FVYV-SLDDEDLVVWAPSLEGKYSVQSCYR--WLL---------DMEGGTAVSVDWA*LW 1319
+ + ++ED W G +SV+S YR W L GG W +W
Sbjct: 978 KIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNLARKTSEQASSSSGGADGRKIWDNVW 1037
Query: 1320 KFQVPEKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDC 1373
K V K+++FAW+ A L T + R + + C +C ET H +C
Sbjct: 1038 KANVQPKVRVFAWKLAQDRLATWENKKKRKIEMFGTCPICGQKEETGFHATVEC 1091
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 251 bits (641), Expect = 1e-64
Identities = 172/546 (31%), Positives = 259/546 (46%), Gaps = 32/546 (5%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQNV--VFKLD 860
+K +VNRLR L +L+ QS+F+PGR DNA+I + HH+ + +N +KLD
Sbjct: 1089 SKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNP-ENAYSAYKLD 1147
Query: 861 LEKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*G 920
L KA V W FL + GF V IM C++ ++ NG L APSRGLR G
Sbjct: 1148 LSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQG 1207
Query: 921 DPLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQV 980
DPLSP+LF+ + L+ +++ VDQ + I R + HL FADD L KA Q
Sbjct: 1208 DPLSPFLFLFVADGLSFLLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQA 1267
Query: 981 RKVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIF 1040
++ +L + +G +N +K S P A + I I + ++YLGFP
Sbjct: 1268 VVMKEVLETYASCTGQLINPSKCSIMFGQSSPTAVQNQIKQTLQISNSFE-DKYLGFPTP 1326
Query: 1041 QGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCD 1100
+GR T+ F + +R+ ++ W + L+ GK IL K VL A+PVY M LF +VC+
Sbjct: 1327 EGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCE 1386
Query: 1101 HLDSLAKNFIWSRGERRGMNMVAWRT---VTLPKCNGGLGIRKARLINTSMLGKLVWDLV 1157
L L +NF W G +GM W++ + K GG+G R RL N ++L + W L+
Sbjct: 1387 ELTKLVRNFWW--GAEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLL 1444
Query: 1158 NSHDKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRGD---- 1212
+ D L +L +Y N + S W A+ ++++ G WRIG G
Sbjct: 1445 DRPDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRL 1504
Query: 1213 -LSFWFSKCHGSKALCEKVPYVHISDTALR-VRDVF-QDGVCDIRGLSTPITPELWALLQ 1269
W + + + + K + LR V D+ Q G D +S P +
Sbjct: 1505 WRDPWIPRSYSRRPISAK------RNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAIL 1558
Query: 1270 NLFVYVSLDDEDLVVWAPSLEGKYSVQSCYRWLLDM--------EGGTAVSVDWA*LWKF 1321
N+ + L+D D + W P G++SV+S Y + + G S W LWK
Sbjct: 1559 NIRLSSRLED-DFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKC 1617
Query: 1322 QVPEKM 1327
P+K+
Sbjct: 1618 NAPQKL 1623
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 243 bits (621), Expect = 3e-62
Identities = 212/831 (25%), Positives = 367/831 (43%), Gaps = 94/831 (11%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQN--VVFKLD 860
+K+++ RL+Q L ++I Q++F+PG+ DN ++ +++H + SRR +CQ+ V K D
Sbjct: 880 SKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRR-ECQSGYVAVKTD 938
Query: 861 LEKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*G 920
+ KA V W FL + GF P V IM CV+S S +L NG I PSRG+R G
Sbjct: 939 ISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQG 998
Query: 921 DPLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQV 980
DPLSPYLF+ C E L+ ++ A Q ++I++D ISHL FADD L +A +
Sbjct: 999 DPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNI 1058
Query: 981 RKVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIF 1040
++ I + ASG +N AKS +P ++ + + I +YLG P
Sbjct: 1059 EQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQ 1118
Query: 1041 QGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCD 1100
GR+ E F++++ +V + W L+ AGK I+ K + A+PVY M F +C+
Sbjct: 1119 LGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICN 1178
Query: 1101 HLDSLAKNFIWSRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSH 1160
++SL F W + + G LG + N ++L K W ++ +
Sbjct: 1179 EINSLITAFWWGK-----------------ENEGDLGFKDLHQFNRALLAKQAWRILTNP 1221
Query: 1161 DKLWV*VLLDLYCTNSDFLHAPR-RRGSCVWNAVMKTRDIIQDGFTWRIGRGDLS-FWFS 1218
L + LY N+ +L A + S WN++ + + ++Q G R+G G + W
Sbjct: 1222 QSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIW-- 1279
Query: 1219 KCHGSKALCEKVPYVHISDTALRVRDVFQDG--VCDIRGLSTPITPELWALLQNLFVYVS 1276
+ L + I D ++V D++++ D + PE L ++L++ +
Sbjct: 1280 EDPWLPTLPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYL-SN 1338
Query: 1277 LDDEDLVVWAPSLEGKYSVQSCYRWLL------------DMEGGTAVSVDWA*LWKFQVP 1324
D WA + +Y+V+S Y W+ +EG + + +W+ ++
Sbjct: 1339 YAARDSYKWAYTRNTQYTVRSGY-WVATHVNLTEEEIINPLEGDVPLKQE---IWRLKIT 1394
Query: 1325 EKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNLC 1384
K+K F W+ +L T +R + C C + ET H + C + VW++
Sbjct: 1395 PKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSAN 1454
Query: 1385 VSLTPGFFTASSFLDWIASVPRHD-------VAGLLVH--AWFIWCRRRRFVFAG-ELEP 1434
S + + + I + + + GL+ W +W R ++F + P
Sbjct: 1455 FSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFP 1514
Query: 1435 WRL--------------------ILHRAAD-----VLRCLRATSPSMPAA----DPGRAE 1465
W++ I H A + R + +SP D G +
Sbjct: 1515 WKVAQKAEQEATEWVETMVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQ 1574
Query: 1466 ------VGGVVRDAVGCWLFGYSGFIGMAE---ILKAELLAVLFGLQSCWDRGFRQLVVS 1516
G ++RD G L +SG + + L+AE L L LQ W RG+ +
Sbjct: 1575 GRDYTSTGWILRDCNGRVL--HSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFE 1632
Query: 1517 SDSMVVLSLLRHGVTRFHVYAAIVGAIRELLRRDWRVELKHMLREGNVVAD 1567
D++ + +L+ + H+ ++ IR + + + ++ RE N+ AD
Sbjct: 1633 GDNLELTNLI-NKTEDHHLLETLLYDIRFWMTKLPFSSIGYVNRERNLAAD 1682
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 240 bits (612), Expect = 3e-61
Identities = 200/659 (30%), Positives = 289/659 (43%), Gaps = 36/659 (5%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRRGKCQN-VVFKLDL 861
+K+MV RL+ FL +L+ P QS+F+ R DN +I ++VH + + + + + K ++
Sbjct: 520 SKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNM 579
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W ++R L GF V IMF +SS S S+L N I PSRGLR GD
Sbjct: 580 SKAFDRVEWNYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGD 639
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVR 981
PLSP+LFVLC E LT + A Q +R S +G I HL FADD L + KA +V
Sbjct: 640 PLSPFLFVLCSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVT 699
Query: 982 KVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFP-IF 1040
+++I + +G +N KS V K I I YLG P F
Sbjct: 700 VIKSIFKVYGDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECF 759
Query: 1041 QGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCD 1100
G + Q D++ DR+ + + W R L+ GK L K A+ Y M F C
Sbjct: 760 SGSKVQ-LLDYIKDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCV 818
Query: 1101 HLDSLAKNFIWSRGE-RRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNS 1159
++ S +F W+ E +R + V+ + L K NGGLG R N ++L K W L+
Sbjct: 819 NMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQF 878
Query: 1160 HDKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRG-DLSFWF 1217
+ L+ Y DFL A + S W +++ RD++ GF ++G G S W
Sbjct: 879 PNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWM 938
Query: 1218 SKC---HGSKALCEKVPYVHISDTALRVRDVFQ-DGVCDIRG-LSTPITPELWALLQNLF 1272
+ + +K V++ LRV D+ + C R L P ++
Sbjct: 939 DPWIYDNDPRLPLQKHFSVNLD---LRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRN 995
Query: 1273 VYVSLDDEDLVVWAPSLEGKYSVQSCYRWL--------LDMEGGTAVSVDW--A*LWKFQ 1322
VS+D D VW S G+YSV+S Y WL L E S + +W
Sbjct: 996 PVVSMD--DFWVWLHSKSGEYSVKSGY-WLAFQTNKPELIREARVQPSTNGLKEKIWSTL 1052
Query: 1323 VPEKMKLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQN 1382
K+KLF W+ +LP RG+ I C +C E+ H L C + QVW
Sbjct: 1053 TSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWAL 1112
Query: 1383 LCVSLTPGFFTASSFLDWIASVPRHDVAGLLVH---------AWFIWCRRRRFVFAGEL 1432
V + F SS I + GL+ W +W R + F G +
Sbjct: 1113 SGVPTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTI 1171
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 239 bits (611), Expect = 4e-61
Identities = 205/765 (26%), Positives = 325/765 (41%), Gaps = 94/765 (12%)
Query: 881 GFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GDPLSPYLFVLCVERLTISIQ 940
GF V+ IM CV+S + +NG L AP+RGLR GDPLSP+LF+ + L++ ++
Sbjct: 7 GFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLSPFLFLFVADGLSLLLK 66
Query: 941 DAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVRKVQNILADFCMASGLNVNI 1000
+ V QN ++ R ISHL FADD LL KA + V+ +L+ + M +G +N
Sbjct: 67 EKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINP 126
Query: 1001 AK-SRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQGRQTQEHFDFVLDRVNRK 1059
AK S S P +A I + + +RYL FP +GR + F + ++ ++
Sbjct: 127 AKCSILMGGASTPAVSEA-ISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIWKR 185
Query: 1060 FASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDHLDSLAKNFIW-SRGERRG 1118
W L+ GK +L K V+ AIPVY M +F +V D L L KNF W S +R
Sbjct: 186 VIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRK 245
Query: 1119 MNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSHDKLWV*VLLDLYCTNSDF 1178
+ AW ++T PK GGLG R L N ++L + W L+ D L VL Y +
Sbjct: 246 THWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSL 305
Query: 1179 LHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRGD-----LSFWFSKCHGSKALCEKV-- 1230
+ S W ++ D+++ G WR+G G+ W + H + + K
Sbjct: 306 IDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGKANC 365
Query: 1231 PYVHISDTALRVRDVFQDGVCDIRGLSTPITPELWALLQNLFVYVSLD-------DEDLV 1283
+SD + +DG D+ P++ NL V L+ +ED +
Sbjct: 366 RLKWVSDL------ITEDGSWDV--------PKIHQYFHNLDAEVILNICISSRSEEDFI 411
Query: 1284 VWAPSLEGKYSVQSCYR---WLLDME-----GGTAVSVDWA*LWKFQVPEKMKLFAWQAA 1335
W P G +SV+S YR L+++E G ++ W +WK +VP+K+K+FAW+ A
Sbjct: 412 AWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVA 471
Query: 1336 HRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQ------NLCVSLTP 1389
L T+ R + C +C E H L C + Q+W ++ V +
Sbjct: 472 SNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKA 531
Query: 1390 GFFTASSFLDWIASVPRHDVAGLLVHAWFIWCRRRRFVFAGELEP----WRLI------- 1438
D + +P ++ A L+ W W R + P R I
Sbjct: 532 SVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLL 591
Query: 1439 ----------LHRAADVLRCL--------RATSPSMPA------------------ADPG 1462
L + V+R + R + P A G
Sbjct: 592 FQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSG 651
Query: 1463 RAEVGGVVRDAVGCWLF-GYSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMV 1521
+ +G ++R++ G +F L++EL A + GL+ + V +D
Sbjct: 652 KGGLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCAS 711
Query: 1522 VLSLLRHGVTRFHVYAAIVGAIRELLRRDWRVELKHMLREGNVVA 1566
V+ LL+ F V A I+ R LL + + +K + R N ++
Sbjct: 712 VVQLLQGTGRDFSVLANIIHEARHLLVGERVISIKKICRSQNCIS 756
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 236 bits (603), Expect = 4e-60
Identities = 135/370 (36%), Positives = 211/370 (56%), Gaps = 2/370 (0%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSRR-GKCQNVVFKLDL 861
+KV+VNRL+ L E+I P QS+F+P R N ++ ++ H++N R+ GK KLD+
Sbjct: 866 SKVIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDM 925
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W FLR + GF V+L+M CV+S + + NG I P RGLR GD
Sbjct: 926 SKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGD 985
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVR 981
PLSPYLF++C E L+ +Q A + E +++ RD I+HLFFADD L+L +A + +
Sbjct: 986 PLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQ 1045
Query: 982 KVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQ 1041
+++ +L + +ASG +N KS S + ++ + ++ I A ERYLG P+
Sbjct: 1046 ELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCINQEAKNERYLGLPVSI 1105
Query: 1042 GRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDH 1101
G+ ++ F+++ +V + W+ +LL+KAGK IL K V AIP Y M F +CD
Sbjct: 1106 GKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGKEILVKAVAQAIPTYAMSCFDLTKGLCDE 1165
Query: 1102 LDSLAKNFIWSRGERRG-MNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSH 1160
++S+ + WS+ ++ ++ ++W +TLPK GG G R L N +ML + W L+ +
Sbjct: 1166 INSMISKWWWSQNDKENKIHWLSWEKMTLPKKLGGPGFRDLHLFNMAMLARQAWRLLLNV 1225
Query: 1161 DKLWV*VLLD 1170
D L V +D
Sbjct: 1226 DSLCGQVFVD 1235
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 234 bits (596), Expect = 2e-59
Identities = 174/566 (30%), Positives = 262/566 (45%), Gaps = 19/566 (3%)
Query: 803 TKVMVNRLRQFLQELIGPLQSSFIPGRGTIDNAIILQKIVHHMNSR-RGKCQNVVFKLDL 861
+K+M RL+ +L E++ QS+F+ R DN ++ ++VH + R + + K D+
Sbjct: 484 SKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDM 543
Query: 862 EKACGSVSWAFLRDTLCFFGFPPTSVSLIMFCVSSSSLSLLWNGVKLPPIAPSRGLR*GD 921
KA V W++LR L GF V+ IM CVSS + S+L N I RGLR GD
Sbjct: 544 SKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGD 603
Query: 922 PLSPYLFVLCVERLTISIQDAVDQNQGELVRISRDGSPISHLFFADDVLLLAKAKVSQVR 981
PLSP+LFVLC E LT + A + E ++ S +G + HL FADD L L KA Q
Sbjct: 604 PLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSL 663
Query: 982 KVQNILADFCMASGLNVNIAKSRDFSSVSVPRAKKADIFVVTSIPFTANLERYLGFPIFQ 1041
+Q IL + A+G +N+ KS V K I I YLG P
Sbjct: 664 VLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECF 723
Query: 1042 GRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*AVCDH 1101
+ ++ DR+ K W R L++ GK +L K V A+PV+ M F C++
Sbjct: 724 SGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCEN 783
Query: 1102 LDSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDLVNSH 1160
L+S +F W S R ++ +W + LPK +GGLG R + N ++L K W L++
Sbjct: 784 LESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFP 843
Query: 1161 DKLWV*VLLDLYCTNSDFLHAP-RRRGSCVWNAVMKTRDIIQDGFTWRIGRG-DLSFWFS 1218
D L +L Y +DFL A +R S W +++ R+++ G R+G G L W
Sbjct: 844 DCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWID 903
Query: 1219 KCHGSKALCEKVPYVHISDTALRVRDVF--QDGVCDIRGLSTPITPELWALLQNLFVYVS 1276
I D L+V+ + + G D L PE +L+ +
Sbjct: 904 PWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPE--DILRIKAIKPV 961
Query: 1277 LDDEDLVVWAPSLEGKYSVQSCYRWLL----DMEGGTAVSVDWA*L------WKFQVPEK 1326
+ D VW + G +SV+S Y WL + VS+ + L W Q K
Sbjct: 962 ISQADFFVWKLNKSGDFSVKSAY-WLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPK 1020
Query: 1327 MKLFAWQAAHRSLPTVDTFHDRGVAI 1352
+K+F W+ LP + + RG+++
Sbjct: 1021 IKIFLWKVLSGILPVAENLNGRGMSL 1046
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 233 bits (595), Expect = 3e-59
Identities = 167/580 (28%), Positives = 272/580 (46%), Gaps = 53/580 (9%)
Query: 1038 PIFQGRQTQEHFDFVLDRVNRKFASWKGRLLNKAGKFILFKLVLNAIPVYPMQLFWFH*A 1097
PI Q R ++ F VL+R + + A W+GR L+ AG+ L K VL ++PV+ M +
Sbjct: 2 PILQKRINKDTFIEVLERASSRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPKS 61
Query: 1098 VCDHLDSLAKNFIW-SRGERRGMNMVAWRTVTLPKCNGGLGIRKARLINTSMLGKLVWDL 1156
D LD L+++F+W S E+R ++++AW V LPK GGLGIR AR +N ++L K+ W L
Sbjct: 62 TLDKLDQLSRSFLWGSTPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRL 121
Query: 1157 VNSHDKLWV*VLLDLY----CTNSDFLHAPRRRGSCVWNAVMK-TRDIIQDGFTWRIGRG 1211
+ LW VL Y ++ +++ +R S W ++ R+++ G W +G G
Sbjct: 122 MKDRTSLWARVLRSKYRIGGLRDTTWINT-KRNASSTWRSIKSGLREVVIPGMNWVVGDG 180
Query: 1212 -DLSFWFSKCHGSKALCEKVPYVHISD-TALRVRDVFQDGV-CDIRGLSTPITPELWALL 1268
D+ FW K + + +D +++R+++ +G D+ + ++ + L
Sbjct: 181 KDICFWDDKWLVEDPIRDLAAVELPADFQGIKIRELWHEGSGWDLAKIIPYVSEGVRLRL 240
Query: 1269 QNLFVYVSLDDEDLVVWAPSLEGKYSVQSCYRWLLDMEGGTA-VSVDWA*LWKFQVPEKM 1327
++ V D W + G+++V+S Y +LL E + + +W+ E++
Sbjct: 241 LSMVVDTVTGSNDRTSWGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVTTTERV 300
Query: 1328 KLFAWQAAHRSLPTVDTFHDRGVAIPRWCSLCHHHVET*MHCLRDCDASLQVWQNLCVSL 1387
++F W H+ + T R ++ C +C ET +H LRDC + +W L
Sbjct: 301 RVFIWLVVHQVIMTDVERRRRHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRG 360
Query: 1388 TPGFFTASSFLDW----------IASVPRHDVAGLLVHAWFIW-------------CRRR 1424
F AS+ LDW I P + ++V W+ W CR R
Sbjct: 361 KITAFFASNILDWVYQNLSDVTEIRGCPWATLFAIVV--WWAWKWRCGNVFGENGRCRDR 418
Query: 1425 -RFVFAGELEPWRLILH------RAADVLRCLRATSPSM----------PAADPGRAEVG 1467
RFV E W L+ R ++V ++ T PS +PG A G
Sbjct: 419 VRFVVDQAREIWIAHLNLRRGAMRGSEVEMSIKWTPPSTGWFKLNTDGASRGNPGLATAG 478
Query: 1468 GVVRDAVGCWLFGYSGFIGMAEILKAELLAVLFGLQSCWDRGFRQLVVSSDSMVVLSLLR 1527
GVVRD G W G+ IG+ AEL V +GL W+RG R+L + DS +V+ L+
Sbjct: 479 GVVRDGEGQWCVGFVLNIGICSAPLAELWGVYYGLHIAWERGIRRLELEVDSTLVVGFLQ 538
Query: 1528 HGVTRFHVYAAIVGAIRELLRRDWRVELKHMLREGNVVAD 1567
G+ H + +V + RDW V + H+ RE N +AD
Sbjct: 539 AGIEDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLAD 578
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.338 0.147 0.507
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,603,813,147
Number of Sequences: 2540612
Number of extensions: 107462428
Number of successful extensions: 324040
Number of sequences better than 10.0: 862
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 321703
Number of HSP's gapped (non-prelim): 1379
length of query: 1569
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1427
effective length of database: 502,593,490
effective search space: 717200910230
effective search space used: 717200910230
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0022.23