BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.11
(334 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 350 3e-95
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 349 6e-95
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 348 1e-94
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 348 2e-94
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 346 6e-94
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 346 6e-94
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 345 1e-93
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 345 1e-93
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-... 344 2e-93
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 343 3e-93
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 343 5e-93
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 342 9e-93
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 341 2e-92
ref|XP_463013.1| putative copia-type pol polyprotein [Oryza sati... 340 5e-92
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 339 6e-92
gb|AAX94989.1| retrotransposon protein, putative, unclassified [... 339 6e-92
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 339 8e-92
gb|AAP51900.1| putative Zea mays retrotransposon Opie-2 [Oryza s... 338 1e-91
gb|AAL75483.1| putative pol protein [Zea mays] 338 1e-91
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 338 1e-91
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 350 bits (898), Expect = 3e-95
Identities = 173/312 (55%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGELKYFLG QV Q E T+I Q+KYT+
Sbjct: 1441 QIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQ 1500
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L KF M + P KTPM L+ + V QK+YR MIGSLLYL ASRPDI+ SV
Sbjct: 1501 DILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVC 1560
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E+HLT VKRIL+YL T GL Y + S + L GY DAD+AG + RKST
Sbjct: 1561 MCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKST 1620
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q+LWM+ L DY + + +
Sbjct: 1621 SGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPL 1680
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI ++YHF+RD+ QKG + + +++T Q ADIF+KPL E
Sbjct: 1681 LCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDE 1740
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1741 QTFTKLRHELNI 1752
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 349 bits (896), Expect = 6e-95
Identities = 173/312 (55%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGELKYFLG QV Q E T+I Q+KYT+
Sbjct: 1573 QIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQ 1632
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L KF M + P KTPM L+ + V QK+YR MIGSLLYL ASRPDI+ SV
Sbjct: 1633 DILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVC 1692
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E+HLT VKRIL+YL T GL Y + S + L GY DAD+AG + RKST
Sbjct: 1693 MCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKST 1752
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q+LWM+ L DY + + +
Sbjct: 1753 SGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPL 1812
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI ++YHF+RD+ QKG + + +++T Q ADIF+KPL E
Sbjct: 1813 LCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDE 1872
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1873 QSFTRLRHELNI 1884
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 348 bits (894), Expect = 1e-94
Identities = 163/312 (52%), Positives = 230/312 (73%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG + + +F++ M+ EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 1101 QIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 1160
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L++F M C P TP+ T +L+ ++ V QK YR MIGSLLYLTASRPDI F+V
Sbjct: 1161 DLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVC 1220
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 1221 LCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKST 1280
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY I + +
Sbjct: 1281 SGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGITFEKVPL 1340
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HSR KHI++++HF+RD+V+KG + L+F+DT Q ADIF+KPL
Sbjct: 1341 FCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDS 1400
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 1401 NRFAFLRGELGV 1412
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 348 bits (892), Expect = 2e-94
Identities = 173/312 (55%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGELKYFLG QV Q E T+I Q+KYT+
Sbjct: 744 QIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQ 803
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L KF M + P KTPM L+ + V QK+YR MIGSLLYL ASRPDI+ SV
Sbjct: 804 DILTKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVC 863
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E+HLT VKRIL+YL T GL Y + S + L GY DAD+AG + RKST
Sbjct: 864 MCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKST 923
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q+LWM+ L DY + + +
Sbjct: 924 SGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLLDYGYKLTKVPL 983
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI ++YHF+RD+ QKG + + +++T Q ADIF+KPL E
Sbjct: 984 LCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDE 1043
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1044 QSFTRLRHELNI 1055
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 346 bits (887), Expect = 6e-94
Identities = 166/312 (53%), Positives = 228/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +FS +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1477 QIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1536
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1537 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1596
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1597 LCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1656
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1657 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1716
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1717 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1776
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1777 SRFEFLRSELGV 1788
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 346 bits (887), Expect = 6e-94
Identities = 166/312 (53%), Positives = 228/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +FS +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1092 QIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1151
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1152 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1211
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1212 LCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1271
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1272 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1331
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1332 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1391
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1392 SRFEFLRSELGV 1403
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 345 bits (884), Expect = 1e-93
Identities = 165/312 (52%), Positives = 228/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +FS +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1477 QIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1536
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1537 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1596
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKR+ +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1597 LCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1656
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1657 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1716
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1717 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1776
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1777 SRFEFLRSELGV 1788
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 345 bits (884), Expect = 1e-93
Identities = 165/312 (52%), Positives = 228/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +FS +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1559 QIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1618
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1619 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1678
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKR+ +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1679 LCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1738
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1739 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1798
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1799 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1858
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1859 SRFEFLRSELGV 1870
>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 709
Score = 344 bits (882), Expect = 2e-93
Identities = 162/312 (51%), Positives = 230/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG + L +F++ M+ EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 391 QIYVDDIIFGCSIHALVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 450
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L++F M C P TP+ T +L+ ++ V QK YR MIGSLLYLTASRPDI F+V
Sbjct: 451 DLLRRFKMENCKPISTPIGSTAVLDPDEDGKAVDQKEYRSMIGSLLYLTASRPDIQFAVC 510
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
L A+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 511 LRARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKST 570
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY + + +
Sbjct: 571 SGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVHL 630
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HSR KHI++++HF+RD+V+KG + L+F+DT+ Q ADIF+KPL
Sbjct: 631 FCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTNLQIADIFTKPLDS 690
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 691 NRFAFLRGELGI 702
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 343 bits (881), Expect = 3e-93
Identities = 165/312 (52%), Positives = 227/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +F +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1481 QIYVDDIIFGGSSHALVAQFFDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1540
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1541 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1600
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1601 LCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1660
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1661 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1720
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1721 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1780
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1781 SRFEFLRSELGV 1792
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 343 bits (879), Expect = 5e-93
Identities = 166/312 (53%), Positives = 223/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FLG+Q+ Q + T++ Q+KY K
Sbjct: 1221 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKDGTFVSQTKYIK 1280
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ ++ V KLYR MIGSLLYLTASRPDI+FSV
Sbjct: 1281 DLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVC 1340
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA FQ+ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D+DYAG + +R ST
Sbjct: 1341 MCAWFQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRNST 1400
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+LWMK L DY I + +
Sbjct: 1401 SGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPL 1460
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1461 LCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDE 1520
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1521 TRFCKLRNELNV 1532
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 342 bits (877), Expect = 9e-93
Identities = 166/312 (53%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FLG+Q+ Q + T++ Q+KY K
Sbjct: 1266 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIK 1325
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ + V KLYR MIGSLLYLTASRPDI+FSV
Sbjct: 1326 DLLKRFGLEDAKPIKTPMATNGHLDLDKGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVC 1385
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ+ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D+DYA + +RKST
Sbjct: 1386 MCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYASCKVDRKST 1445
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+LWMK L DY I + +
Sbjct: 1446 SGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPL 1505
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1506 LCDNDRAIKIANNPVQHSRTKHIDIRHHFLRDHVTKCDIVISHIRTEDQLADIFTKPLNE 1565
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1566 TRFCKLRNELNV 1577
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 341 bits (874), Expect = 2e-92
Identities = 170/312 (54%), Positives = 219/312 (69%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N +EFS+MM FEMSMMGELK+FLG+Q+ Q E T+I Q+KY K
Sbjct: 622 QIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKYLK 681
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LKKF M P TPM L+ + V QK+YR +IGSLLYL ASRPDI+ SV
Sbjct: 682 DMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVC 741
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ+ P+E HL VKRIL+YL T NLGL Y K + + L GY DADYAG + +RKST
Sbjct: 742 MCARFQAAPKECHLVAVKRILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKST 801
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSW+SK+Q+++ALSTAEAEYIS C Q++WMK L DY + S I +
Sbjct: 802 SGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTGSCCAQLIWMKQTLRDYGLNVSKIPL 861
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+ +G + ++ V D Q ADIF+KPL E
Sbjct: 862 LCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHSTRGDIDIQHVRIDKQLADIFTKPLDE 921
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 922 ARFCELRSELNI 933
>ref|XP_463013.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|38093747|gb|AAR10863.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 649
Score = 340 bits (871), Expect = 5e-92
Identities = 162/312 (51%), Positives = 226/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG + L EF++ M EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 331 QIYVDDIIFGCSTHALVVEFAEAMCREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 390
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L++F M C TP+ T +L+ + V QK YR MIGSLLYLTASRPDI F +
Sbjct: 391 DLLRRFKMENCKQISTPIGSTAVLDPVEDGEVVNQKEYRSMIGSLLYLTASRPDIQFVMC 450
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 451 LCARFQASPRASHRQAVKRIMRYLNHTLEFGMWYSTSSSICLSGYSDADFGGCRIDRKST 510
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY + +++
Sbjct: 511 SGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVTL 570
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HSR KHI++ +HF+RD+V+KG + L+F+DT Q ADIF+KPL
Sbjct: 571 FCDNTSAINIAKNPVHHSRTKHIDICFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDS 630
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 631 NRFAFLRGELGV 642
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 339 bits (870), Expect = 6e-92
Identities = 169/312 (54%), Positives = 220/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGEL YFLG QV Q + T+I Q+KYT+
Sbjct: 750 QIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQ 809
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F M + PAKTPM + V QK YR MIGSLLYL ASRPDI+ SV
Sbjct: 810 DLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 869
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E HL VKRIL+YL T GL Y K S + L GY D+DYAG + +RKST
Sbjct: 870 MCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKST 929
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSW SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+ S + +
Sbjct: 930 SGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPL 989
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI +++N + HSR KHI++++HF+RD+ QKG + + V T++Q ADIF+KPL E
Sbjct: 990 LCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDE 1049
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1050 KTFCRLRSELNV 1061
>gb|AAX94989.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 318
Score = 339 bits (870), Expect = 6e-92
Identities = 160/311 (51%), Positives = 225/311 (71%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
IYVDDIIFG + L F++ M EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK+
Sbjct: 1 IYVDDIIFGCSTHALVVNFAETMCREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKD 60
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L++F M C P TP+ T +L+ ++ V QK YR MIGSLLYLTASRPDI F+V L
Sbjct: 61 LLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCL 120
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
CA+FQ+ PR +H VKRI++YL T + Y SS LSGY DAD+ R +RKST
Sbjct: 121 CARFQASPRASHRQAVKRIMRYLNHTLEFEIWYSTSSSIYLSGYSDADFGSCRIDRKSTS 180
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISIY 256
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY + +S++
Sbjct: 181 GTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSILKDYGLTFEKVSLF 240
Query: 257 CDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAED 316
CDNT+ I+++KN + HSR KHI++++HF+RD+V+KG + L+F+DT Q ADIF+KPL +
Sbjct: 241 CDNTSGINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSN 300
Query: 317 RFKFILKNLNM 327
RF F+ L +
Sbjct: 301 RFAFLRGELGV 311
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 339 bits (869), Expect = 8e-92
Identities = 164/312 (52%), Positives = 219/312 (69%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FLG+Q+ Q T++ Q+KY K
Sbjct: 1259 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKNGTFVSQTKYIK 1318
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ ++ V KLYR MIGSLLYLT SRPDI+FSV
Sbjct: 1319 DLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTVSRPDIMFSVC 1378
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ+ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D DYAG + +RKST
Sbjct: 1379 MCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDPDYAGCKVDRKST 1438
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
+CQ LG +LVSW+SK+Q+++ALSTAE EY+SA C Q+LWMK L DY I + +
Sbjct: 1439 SSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLWMKQTLLDYGISFTKTPL 1498
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1499 LCDNDGAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDE 1558
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1559 TRFCKLRNELNI 1570
>gb|AAP51900.1| putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|37530622|ref|NP_919613.1| putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|20042883|gb|AAM08711.1| Putative Zea
mays retrotransposon Opie-2 [Oryza sativa]
gi|16924045|gb|AAL31657.1| Putative Zea mays
retrotransposon Opie-2 [Oryza sativa]
Length = 494
Score = 338 bits (868), Expect = 1e-91
Identities = 160/312 (51%), Positives = 225/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIF ++ L EF++ M+ EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 176 QIYVDDIIFDCSSHALVVEFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 235
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L+ F M C P TP+ +L+ ++ V QK YR MIGSLLYLTA RPDI F V
Sbjct: 236 DLLRWFKMENCKPISTPIGSIAVLDPDEDGEAVNQKEYRSMIGSLLYLTAYRPDIQFVVC 295
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 296 LCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKST 355
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY + + +
Sbjct: 356 SGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVPL 415
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HS KHI++++HF+RD+V+KG + L+F+DT Q ADIF+KPL
Sbjct: 416 FCDNTSAINIAKNPVQHSHTKHIDIRFHFLRDHVEKGDVELQFLDTKLQLADIFTKPLDS 475
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 476 NRFAFLRGELGI 487
>gb|AAL75483.1| putative pol protein [Zea mays]
Length = 1553
Score = 338 bits (868), Expect = 1e-91
Identities = 165/312 (52%), Positives = 221/312 (69%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEM MMGEL YFLG QV Q + T+I Q+KYT+
Sbjct: 1235 QIYVDDIIFGSTNQKSCEEFSRVMTQKFEMPMMGELSYFLGFQVKQLKDGTFISQTKYTQ 1294
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ +K+F M + PAKTPM ++ V QK YR MIGSLLYL ASRPDI+ SV
Sbjct: 1295 DLIKRFGMKDAKPAKTPMGTDGHIDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 1354
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDPRE HL VKRIL+YL T G+ Y K S + L GY D+DYAG + +RKST
Sbjct: 1355 MCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYAGCKVDRKST 1414
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSW+SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+ + + +
Sbjct: 1415 SGTCQFLGRSLVSWSSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLNKVPL 1474
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+ QKG + + +V T++Q ADIF+KPL E
Sbjct: 1475 LCDNESAIRMADNPVEHSRTKHIDIRHHFLRDHQQKGDIEVFYVSTENQLADIFTKPLDE 1534
Query: 316 DRFKFILKNLNM 327
F + +N+
Sbjct: 1535 STFCRLRSEINV 1546
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 338 bits (867), Expect = 1e-91
Identities = 165/312 (52%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FL +Q+ Q + T++ Q+KY K
Sbjct: 981 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLRLQIKQLKDGTFLSQTKYIK 1040
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ ++ V KLY MIGSLLYLTASRPDI+FSV
Sbjct: 1041 DLLKRFGLEDAKPIKTPMVTNGHLDLDEGGKPVDLKLYHSMIGSLLYLTASRPDIMFSVC 1100
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D+DYAG + +RKST
Sbjct: 1101 MCARFQVAPKECHLVAVKRILRYLKHSSIIGLWYPKGAKFKLVGYSDSDYAGCKVDRKST 1160
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+LWMK L DY I + +
Sbjct: 1161 SGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQILLDYGISFTKTPL 1220
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1221 LCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVVKSDIVISHIRTEDQLADIFTKPLDE 1280
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1281 TRFCKLRNELNV 1292
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,929,855
Number of Sequences: 2540612
Number of extensions: 20190613
Number of successful extensions: 56206
Number of sequences better than 10.0: 880
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 53913
Number of HSP's gapped (non-prelim): 1096
length of query: 334
length of database: 863,360,394
effective HSP length: 128
effective length of query: 206
effective length of database: 538,162,058
effective search space: 110861383948
effective search space used: 110861383948
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0022.11