BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0021.5
(210 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD82260.1| hypothetical protein [Oryza sativa (japonica cul... 40 0.056
emb|CAE68957.1| Hypothetical protein CBG14937 [Caenorhabditis br... 37 0.28
ref|YP_164514.1| RNA-binding tegument protein [Cercopithecine he... 37 0.36
ref|NP_033746.1| a disintegrin and metalloprotease domain 19 (me... 36 0.62
ref|XP_220328.3| PREDICTED: similar to metalloprotease-disintegr... 36 0.62
emb|CAD90748.1| B22R protein [Cowpox virus] 36 0.62
emb|CAD57708.1| Hypothetical protein Y39B6A.43b [Caenorhabditis ... 36 0.62
emb|CAD31833.2| Hypothetical protein Y39B6A.43a [Caenorhabditis ... 36 0.62
emb|CAI25037.1| a disintegrin and metalloproteinase domain 19 (m... 36 0.62
dbj|BAC55164.1| meltrin beta mini [Mus musculus] 36 0.62
gb|EAA72618.1| hypothetical protein FG08590.1 [Gibberella zeae P... 36 0.81
ref|XP_464742.1| hypothetical protein [Oryza sativa (japonica cu... 36 0.81
ref|NP_572685.2| CG11122-PA [Drosophila melanogaster] gi|4544690... 35 1.1
dbj|BAA89307.1| AHM1 [Triticum aestivum] 35 1.1
ref|XP_225319.3| PREDICTED: similar to Ab2-162 [Rattus norvegicus] 35 1.4
ref|XP_550226.1| hypothetical protein [Oryza sativa (japonica cu... 35 1.4
ref|XP_549854.1| hypothetical protein [Oryza sativa (japonica cu... 35 1.4
dbj|BAB75970.1| alr4271 [Nostoc sp. PCC 7120] gi|17231763|ref|NP... 35 1.8
ref|NP_473389.1| REST corepressor 2 [Mus musculus] gi|8346962|em... 34 2.4
ref|XP_573745.1| PREDICTED: similar to REST corepressor 2 [Rattu... 34 2.4
>dbj|BAD82260.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|56784758|dbj|BAD81931.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 283
Score = 39.7 bits (91), Expect = 0.056
Identities = 21/43 (48%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Query: 41 AATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRR 83
A R PPPR+L+LP P PR P PP H +PP P+RR
Sbjct: 144 ARPRPLPPPRSLVLP-PTTHPRLPPPP---HSRRRPPPTPARR 182
>emb|CAE68957.1| Hypothetical protein CBG14937 [Caenorhabditis briggsae]
Length = 622
Score = 37.4 bits (85), Expect = 0.28
Identities = 18/41 (43%), Positives = 21/41 (50%)
Query: 41 AATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPS 81
A KPPPPR+ P P F R P+PP + PP PS
Sbjct: 54 AVPDKPPPPRSSAPPQPNFDNRPPIPPRRSDSTLLPPPVPS 94
>ref|YP_164514.1| RNA-binding tegument protein [Cercopithecine herpesvirus 2]
gi|52843346|gb|AAU88137.1| RNA-binding tegument protein
[Cercopithecine herpesvirus 2]
Length = 115
Score = 37.0 bits (84), Expect = 0.36
Identities = 25/61 (40%), Positives = 30/61 (48%), Gaps = 6/61 (9%)
Query: 35 RDDTR--KAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGE 92
R D R A +R P PR L P P +PR P P + PPR P RRY+Q P +
Sbjct: 57 RGDARLSPAPSRAPREPRPLREPRPPREPRRPRDP---RQPRGPPRTP-RRYVQPPAPRD 112
Query: 93 P 93
P
Sbjct: 113 P 113
>ref|NP_033746.1| a disintegrin and metalloprotease domain 19 (meltrin beta) [Mus
musculus] gi|56206987|emb|CAI25036.1| a disintegrin and
metalloproteinase domain 19 (meltrin beta) [Mus
musculus] gi|20137261|sp|O35674|ADA19_MOUSE ADAM 19
precursor (A disintegrin and metalloproteinase domain
19) (Meltrin beta) gi|2905998|gb|AAC40037.1|
metalloprotease-disintegrin meltrin beta [Mus musculus]
gi|11079165|dbj|BAA18923.2| meltrin beta [Mus musculus]
Length = 920
Score = 36.2 bits (82), Expect = 0.62
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 10/54 (18%)
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGE 92
RK + R+PPP R P P P CLL + PR P + +P+ G+
Sbjct: 829 RKESARRPPPSR----------PMPPAPNCLLSQDFSRPRPPQKALPANPVPGQ 872
>ref|XP_220328.3| PREDICTED: similar to metalloprotease-disintegrin meltrin beta
[Rattus norvegicus]
Length = 1657
Score = 36.2 bits (82), Expect = 0.62
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 10/54 (18%)
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGE 92
RK + R+PPP R P P P CLL + PR P + +P+ G+
Sbjct: 1559 RKESARRPPPSR----------PMPPAPNCLLSQDFSRPRPPQKALPANPVPGQ 1602
>emb|CAD90748.1| B22R protein [Cowpox virus]
Length = 1933
Score = 36.2 bits (82), Expect = 0.62
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 38 TRKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRY 84
TRK ATR+P P L P PR P P H+ PP+ P R Y
Sbjct: 714 TRKGATRRPRRPTNDGLQSPNPPPRNPRRPLPQHDDYSPPQVPQRDY 760
>emb|CAD57708.1| Hypothetical protein Y39B6A.43b [Caenorhabditis elegans]
gi|32567334|ref|NP_741653.2| putative protein family
member (5T436) [Caenorhabditis elegans]
Length = 753
Score = 36.2 bits (82), Expect = 0.62
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 63 APLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHHCTPLTVRNKTPQEIFRFAA 122
AP PP LL PP P T N H L R Q+ RF+A
Sbjct: 652 APSPPPLLKRVTFPPE---------PQQSTSSTSAENLHELKLQLIRREMQNQD--RFSA 700
Query: 123 LRRRASALQLAISPSFGLRWPRNHHHHALHGERNKTLY 160
+ RA L + FG+ HHHH +H E+ + ++
Sbjct: 701 VLDRADGLLARMEQRFGVE----HHHHIVHQEQEEEVW 734
>emb|CAD31833.2| Hypothetical protein Y39B6A.43a [Caenorhabditis elegans]
gi|32567332|ref|NP_741652.2| putative protein (5T436)
[Caenorhabditis elegans]
Length = 750
Score = 36.2 bits (82), Expect = 0.62
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 63 APLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHHCTPLTVRNKTPQEIFRFAA 122
AP PP LL PP P T N H L R Q+ RF+A
Sbjct: 649 APSPPPLLKRVTFPPE---------PQQSTSSTSAENLHELKLQLIRREMQNQD--RFSA 697
Query: 123 LRRRASALQLAISPSFGLRWPRNHHHHALHGERNKTLY 160
+ RA L + FG+ HHHH +H E+ + ++
Sbjct: 698 VLDRADGLLARMEQRFGVE----HHHHIVHQEQEEEVW 731
>emb|CAI25037.1| a disintegrin and metalloproteinase domain 19 (meltrin beta) [Mus
musculus]
Length = 419
Score = 36.2 bits (82), Expect = 0.62
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 10/54 (18%)
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGE 92
RK + R+PPP R P P P CLL + PR P + +P+ G+
Sbjct: 328 RKESARRPPPSR----------PMPPAPNCLLSQDFSRPRPPQKALPANPVPGQ 371
>dbj|BAC55164.1| meltrin beta mini [Mus musculus]
Length = 419
Score = 36.2 bits (82), Expect = 0.62
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 10/54 (18%)
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGE 92
RK + R+PPP R P P P CLL + PR P + +P+ G+
Sbjct: 328 RKESARRPPPSR----------PMPPAPNCLLSQDFSRPRPPQKALPANPVPGQ 371
>gb|EAA72618.1| hypothetical protein FG08590.1 [Gibberella zeae PH-1]
gi|46128425|ref|XP_388766.1| hypothetical protein
FG08590.1 [Gibberella zeae PH-1]
Length = 354
Score = 35.8 bits (81), Expect = 0.81
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 35 RDDTRKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNP---SRRYLQSPISG 91
R+ +RK AT P P+ L LP P P+AP C KPPR P Y+ +
Sbjct: 144 RNQSRKPATTYSPFPKPLPLP-PRTAPQAPSWQCSRDVKQKPPRPPRPHEEVYVFRSLQN 202
Query: 92 EPL----TIWRNQHHHCTPLTVRNKTPQE 116
PL + ++ TP R T QE
Sbjct: 203 SPLVAHFAVTQDSPRPITPKDSRPTTAQE 231
>ref|XP_464742.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49388528|dbj|BAD25650.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 252
Score = 35.8 bits (81), Expect = 0.81
Identities = 37/140 (26%), Positives = 49/140 (34%), Gaps = 22/140 (15%)
Query: 41 AATRKPPPPRTLLLPFP--LFQPRAPLPPCLLHEAMKPPRNP-----SRRYLQSPISGEP 93
A R+PPPP L P + + R P H +PP P S P + P
Sbjct: 48 ARLRRPPPPTACDLHSPTVVLRRRRPSSSTRCHRDRRPPPPPTVVKHSAAAAADPSTAHP 107
Query: 94 LTIWRNQHHHCTPLTVRNKTPQEIFRFAALRRRASALQLAISPSFGLRWPRNHHHHALHG 153
L R H H R + A RR + + + G RWP +H LH
Sbjct: 108 LHRRRLLHRH------RPLHRHRLLHRARGRRWPLHRRRPLHRAHGRRWPLHHRRPPLHR 161
Query: 154 ERNKTLYSFSSPATLPPLAA 173
R P+ PP +A
Sbjct: 162 RR---------PSAPPPPSA 172
>ref|NP_572685.2| CG11122-PA [Drosophila melanogaster] gi|45446902|gb|AAF48000.3|
CG11122-PA [Drosophila melanogaster]
Length = 3539
Score = 35.4 bits (80), Expect = 1.1
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 37 DTRKAATRKP---PPPRTLL-LPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGE 92
D K ++RKP PPPR LP PL PLP A+ P P L +P+ G
Sbjct: 1501 DLSKKSSRKPSPVPPPRMQQELPMPL----VPLPLVTNANALAPQSQPGGAPLPTPVGGA 1556
Query: 93 PLT 95
P+T
Sbjct: 1557 PVT 1559
>dbj|BAA89307.1| AHM1 [Triticum aestivum]
Length = 542
Score = 35.4 bits (80), Expect = 1.1
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 40 KAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQS----PISGEP 93
+AAT+ PPPP+ L P QP+ P L A KPP +P LQ+ P S +P
Sbjct: 234 RAATQTPPPPQPSRLQ-PATQPQPSPQPSPLQAATKPPPSPQPSPLQAATKPPSSPQP 290
>ref|XP_225319.3| PREDICTED: similar to Ab2-162 [Rattus norvegicus]
Length = 1352
Score = 35.0 bits (79), Expect = 1.4
Identities = 20/47 (42%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Query: 42 ATRKPPPPRTLLLPFPLFQP-----RAPLPPCLLHEAMKPPRNPSRR 83
+TR PPPPRT P P P R P L H ++ PRN +RR
Sbjct: 156 STRPPPPPRTGDAPAPACAPPHLPLRCRAPSALCHPRVRWPRNFTRR 202
>ref|XP_550226.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55296767|dbj|BAD68093.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|54290209|dbj|BAD61097.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 252
Score = 35.0 bits (79), Expect = 1.4
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 34 YRDDTRKAATRKPPPPRTLLLPFPLFQPRAP--LPPCLLHEAMK--------PPRNPSRR 83
+++ T R+P PP P PL +PR P LPP L ++ PPR P RR
Sbjct: 40 WQEATPPRGLRQPRPPLAHPPPLPLVRPRLPPLLPPVLHPRPLQLAAGPPGFPPRGPRRR 99
Query: 84 YLQSPISGEPLT 95
+ P G P T
Sbjct: 100 --REPWRGRPGT 109
>ref|XP_549854.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|52076235|dbj|BAD44889.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|52076196|dbj|BAD44850.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 236
Score = 35.0 bits (79), Expect = 1.4
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 34 YRDDTRKAATRKPPPPRTLLLPFPLFQPRAP--LPPCLLHEAMK--------PPRNPSRR 83
+++ T R+P PP P PL +PR P LPP L ++ PPR P RR
Sbjct: 42 WQEATPPRGLRQPRPPLAHPPPLPLVRPRLPPLLPPVLHPRPLQLAAGPPGFPPRGPRRR 101
Query: 84 YLQSPISGEPLT 95
+ P G P T
Sbjct: 102 --REPWRGRPGT 111
>dbj|BAB75970.1| alr4271 [Nostoc sp. PCC 7120] gi|17231763|ref|NP_488311.1|
hypothetical protein alr4271 [Nostoc sp. PCC 7120]
gi|25359399|pir||AH2339 hypothetical protein alr4271
[imported] - Nostoc sp. (strain PCC 7120)
Length = 248
Score = 34.7 bits (78), Expect = 1.8
Identities = 31/123 (25%), Positives = 48/123 (38%), Gaps = 17/123 (13%)
Query: 4 FFTFLFMCLILEIVQTMKNKISTAVVLTRCYRDDTRKAATRKPPPPRTLLLPFPLFQPRA 63
F T + IL+ + +K S V + R PPP L P P +P A
Sbjct: 117 FITASILGSILDSSEPVKQLASPPVTT------EARSLLAPPPPPEPVLAEPEPETEPEA 170
Query: 64 PLPPCLLHEAMKPPRNPSRRYLQSPISGEPL---------TIWRNQHHHCTPLTVRNKTP 114
LPP + H +KP N R+ + + L T+++ ++ P RN+ P
Sbjct: 171 ELPPPVTHHEVKP--NLERQLIFGSLIQSELAKRLNVYSSTVYKRRNDPDFPEWTRNRDP 228
Query: 115 QEI 117
I
Sbjct: 229 DGI 231
>ref|NP_473389.1| REST corepressor 2 [Mus musculus] gi|8346962|emb|CAB93943.1| CoREST
protein [Mus musculus]
Length = 479
Score = 34.3 bits (77), Expect = 2.4
Identities = 18/41 (43%), Positives = 22/41 (52%), Gaps = 3/41 (7%)
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQ 86
PPPP +L P PL +P P P LL + PP R+LQ
Sbjct: 396 PPPPTSLSQPPPLLRPPLPTAPTLLRQ---PPPLQQGRFLQ 433
>ref|XP_573745.1| PREDICTED: similar to REST corepressor 2 [Rattus norvegicus]
gi|62641824|ref|XP_344987.2| PREDICTED: similar to REST
corepressor 2 [Rattus norvegicus]
gi|58400802|gb|AAH89209.1| REST corepressor 2 [Rattus
norvegicus] gi|62078717|ref|NP_001014016.1| REST
corepressor 2 [Rattus norvegicus]
Length = 523
Score = 34.3 bits (77), Expect = 2.4
Identities = 18/41 (43%), Positives = 22/41 (52%), Gaps = 3/41 (7%)
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQ 86
PPPP +L P PL +P P P LL + PP R+LQ
Sbjct: 440 PPPPTSLSQPPPLLRPPLPTAPTLLRQ---PPPLQQGRFLQ 477
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,824,127
Number of Sequences: 2540612
Number of extensions: 17110026
Number of successful extensions: 76874
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 76672
Number of HSP's gapped (non-prelim): 243
length of query: 210
length of database: 863,360,394
effective HSP length: 122
effective length of query: 88
effective length of database: 553,405,730
effective search space: 48699704240
effective search space used: 48699704240
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0021.5