BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019b.10
(251 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAG82185.1| unnamed protein product [Yarrowia lipolytica CLI... 46 0.001
ref|NP_609552.1| CG17211-PA [Drosophila melanogaster] gi|7297926... 40 0.061
gb|AAB94414.1| 056R [Chilo iridescent virus] gi|7461117|pir||T03... 40 0.061
ref|ZP_00322244.1| COG3468: Type V secretory pathway, adhesin Ai... 39 0.10
ref|XP_643319.1| CCR4-Not complex component, Not1 [Dictyostelium... 39 0.10
gb|AAB07544.1| ORF DG1040; initially derived from a plasmid disr... 39 0.10
ref|XP_646632.1| putative GATA-binding transcription factor [Dic... 39 0.13
gb|EAA76187.1| hypothetical protein FG06992.1 [Gibberella zeae P... 39 0.18
ref|ZP_00239985.1| N-acetylmuramoyl-L-alanine amidase [Bacillus ... 39 0.18
ref|YP_022089.2| endopeptidase lyte, putative [Bacillus anthraci... 38 0.23
ref|ZP_00390124.1| COG3883: Uncharacterized protein conserved in... 38 0.23
gb|AAH92479.1| LRRC41 protein [Homo sapiens] 38 0.23
gb|AAD42189.1| serum opacity factor precursor [Streptococcus pyo... 38 0.23
emb|CAD21372.1| hypothetical protein [Neurospora crassa] gi|3241... 37 0.39
emb|CAA20314.2| SPBC30B4.01c [Schizosaccharomyces pombe] gi|4842... 37 0.51
gb|AAH58068.1| Serine/arginine repetitive matrix 1 [Danio rerio]... 37 0.51
emb|CAD37326.1| attachment protein [Respiratory syncytial virus] 37 0.51
ref|XP_641173.1| dynactin 150 kDa subunit [Dictyostelium discoid... 37 0.51
ref|XP_638001.1| hypothetical protein DDB0186746 [Dictyostelium ... 37 0.51
emb|CAB09116.1| SPBC3D6.14c [Schizosaccharomyces pombe] gi|19112... 37 0.67
>emb|CAG82185.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50548805|ref|XP_501872.1| hypothetical protein
[Yarrowia lipolytica]
Length = 812
Score = 45.8 bits (107), Expect = 0.001
Identities = 36/130 (27%), Positives = 59/130 (44%), Gaps = 11/130 (8%)
Query: 123 LDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQR 182
+ P +L+ T G+ P S ++G TS+TSPTS ++ + S
Sbjct: 323 ISPIVLSTTPNSGSTTP---SNSGTITGSEVTSSTSPTSSSGSSSSSTILPSSSS----- 374
Query: 183 ASPSATVRNASSPETSS---QQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGR 239
ASPS+ ++S+P +SS P + +PG +S P + + SS++ SS SS
Sbjct: 375 ASPSSRPSSSSAPVSSSSPVSSSSPSSSNPGSSSSSSPSSSSPSSSSSSPSSSSSSSSPS 434
Query: 240 PKGSKNKPQP 249
S + P
Sbjct: 435 SSSSSSSSSP 444
Score = 35.4 bits (80), Expect = 1.5
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 149 SGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSS--QQCFPLT 206
S ++ S++SP+S ++ +SP +S ++ ++SSP +SS P +
Sbjct: 407 SSSSSPSSSSPSSSSSSPSSSSSSSSPSSSSSSSSSSPSSSSSSSSPSSSSSFSSSSPSS 466
Query: 207 CSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQP 249
S +S +P+ SS++++S SS S + P P
Sbjct: 467 SSSSSSSSSSSSSPSASSSSSSSTSLSSSSSSSSSSSSSAPLP 509
>ref|NP_609552.1| CG17211-PA [Drosophila melanogaster] gi|7297926|gb|AAF53171.1|
CG17211-PA [Drosophila melanogaster]
Length = 1354
Score = 40.0 bits (92), Expect = 0.061
Identities = 37/136 (27%), Positives = 60/136 (43%), Gaps = 8/136 (5%)
Query: 120 SLNLDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQII 179
+L + P +L T+ G + T+ + R++ ATTS+T S + T+ +T I
Sbjct: 601 NLTVTPPMLVVTSKYGQPVTHRTANK-RVN--ATTSSTIAKSTDKPSTSTTQQTKVDSTI 657
Query: 180 RQRASPSATV----RNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSS 235
+ A+PS TV R T+S+ P +P S +P TP + T ++
Sbjct: 658 KTTATPSTTVKPKPRTTRKTITTSKPTTPKPTTPKTTTS-KPTTPKITTPKPTTPKPSTT 716
Query: 236 QRGRPKGSKNKPQPHP 251
+ PK S KP P
Sbjct: 717 KTTTPKSSSAKPALPP 732
>gb|AAB94414.1| 056R [Chilo iridescent virus] gi|7461117|pir||T03040 hypothetical
protein 003R - Chilo iridescent virus
gi|15078769|ref|NP_149519.1| 056R [Invertebrate
iridescent virus 6]
Length = 283
Score = 40.0 bits (92), Expect = 0.061
Identities = 38/147 (25%), Positives = 61/147 (40%), Gaps = 14/147 (9%)
Query: 109 IQKSNNYWPFYSLNLDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITN 168
I K N+Y + + +L + IG L + SQ N+L+ T S ++ ++TN
Sbjct: 5 IDKKNSYSFGITSSTTVHVLGEVVAIGGILYYTHSQVNQLN----TKIASLEKQILDLTN 60
Query: 169 VFVRTSPHQIIRQRASP---SATVRNASSPET-SSQQCFPLTCSPGHVASVEPVTPAVKK 224
+ SPH + ++SP S S+P++ SQQ L P + P
Sbjct: 61 ILKHLSPHSFQQLQSSPTTQSTPPLPQSTPQSQQSQQSAVLPQRPSFLGGSTPKESQSFP 120
Query: 225 SSNTNSSKKSSQRGRPKGSKNKPQPHP 251
T S + + RG+ K PHP
Sbjct: 121 GVETRSLGEKTTRGKLK------SPHP 141
>ref|ZP_00322244.1| COG3468: Type V secretory pathway, adhesin AidA [Haemophilus
influenzae 86-028NP]
Length = 1794
Score = 39.3 bits (90), Expect = 0.10
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 141 LTSQQNRLSGFATT-SATSPTSELREITNVFVRTSPHQ----IIRQRASPSATVRNASSP 195
++S N ++ T +A T + +E V + SP Q + +Q+ P TV++ + P
Sbjct: 1220 ISSSSNNINLAGTEDTAKVETEKTQEAPQVAFQASPKQEEPEMAKQQEQPK-TVQSQAQP 1278
Query: 196 ETSSQQCFPLTCSPGHVASV-------EPVTPAVKKSSNTNSSKKSSQR--GRPKGSKNK 246
ET++QQ P + V +V +P T A K+++ +NS +K + + PK ++NK
Sbjct: 1279 ETTTQQAEPARENVSTVNNVKEAQPQAKPTTVAAKETTASNSEQKETAQPVANPKTAENK 1338
Query: 247 PQ 248
+
Sbjct: 1339 AE 1340
>ref|XP_643319.1| CCR4-Not complex component, Not1 [Dictyostelium discoideum]
gi|42733801|gb|AAS38719.1| similar to Dictyostelium
discoideum (Slime mold). ORF DG1040 (Fragment)
gi|60471354|gb|EAL69314.1| CCR4-Not complex component,
Not1 [Dictyostelium discoideum]
Length = 2526
Score = 39.3 bits (90), Expect = 0.10
Identities = 46/185 (24%), Positives = 76/185 (40%), Gaps = 19/185 (10%)
Query: 80 NENQIFDNYVQNQG------TRYAVTGYSFNAQDLIQKSNNYWPFYSLNL---DPRILTQ 130
N N I +N N G + Y FN + + +++ ++L + + T
Sbjct: 26 NNNSINNNDNNNNGNNKEETSEYTDPNNIFNKFNKLSSDKSFYKTWTLQVGSNNNNEQTD 85
Query: 131 TNGIGACLPFLTSQ-QNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATV 189
+N I + +Q +N +S S S +SEL +I N + + I R S
Sbjct: 86 SNTISNLSFVIATQIKNLISNLTKKSYKSNSSELSQIINQYGSQAEIYIFRCLVD-SIDF 144
Query: 190 RNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRG----RPKGSKN 245
+N ++P T+S P T S + P TP+ SS SS S+Q + + S+
Sbjct: 145 KNTNTPITTS----PTTTSATSTTTSTPTTPSTTASSTAASSSSSNQLKIQLFKDEFSRL 200
Query: 246 KPQPH 250
QPH
Sbjct: 201 TKQPH 205
>gb|AAB07544.1| ORF DG1040; initially derived from a plasmid disrupted gene
[Dictyostelium discoideum]
Length = 624
Score = 39.3 bits (90), Expect = 0.10
Identities = 46/185 (24%), Positives = 76/185 (40%), Gaps = 19/185 (10%)
Query: 80 NENQIFDNYVQNQG------TRYAVTGYSFNAQDLIQKSNNYWPFYSLNL---DPRILTQ 130
N N I +N N G + Y FN + + +++ ++L + + T
Sbjct: 26 NNNSINNNDNNNNGNNKEETSEYTDPNNIFNKFNKLSSDKSFYKTWTLQVGSNNNNEQTD 85
Query: 131 TNGIGACLPFLTSQ-QNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATV 189
+N I + +Q +N +S S S +SEL +I N + + I R S
Sbjct: 86 SNTISNLSFVIATQIKNLISNLTKKSYKSNSSELSQIINQYGSQAEIYIFRCLVD-SIDF 144
Query: 190 RNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRG----RPKGSKN 245
+N ++P T+S P T S + P TP+ SS SS S+Q + + S+
Sbjct: 145 KNTNTPITTS----PTTTSATSTTTSTPTTPSTTASSTAASSSSSNQLKIQLFKDEFSRL 200
Query: 246 KPQPH 250
QPH
Sbjct: 201 TKQPH 205
>ref|XP_646632.1| putative GATA-binding transcription factor [Dictyostelium
discoideum] gi|60474791|gb|EAL72728.1| putative
GATA-binding transcription factor [Dictyostelium
discoideum]
Length = 1006
Score = 38.9 bits (89), Expect = 0.13
Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 22/221 (9%)
Query: 42 INSGEEQKEQLQVLIDSGYTSEEIEGWK----NNLIVEGILFNENQIFDNYVQNQGTRYA 97
IN+ I+S SE +K NN I + NQ D + +Q T
Sbjct: 26 INNNNINNSNPNNFINSNTDSELYGNYKPSSSNNFINN---HHNNQSSDIHSISQSTPNL 82
Query: 98 VTGYSFNAQDLIQKSNNYWPFYSLNLD----PRILTQTNGIGACLPFLTSQQNRLSGFAT 153
T S ++ + +NN P YS+N P +L + + PF QQ + + +
Sbjct: 83 STLISSSSNNNNNNNNNNSPNYSMNSSSDQAPNLLNMDSKLRWNQPFQNQQQQQPTSEVS 142
Query: 154 TSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETS---------SQQCFP 204
T++ + +SE N V +S + I S S V N+S P TS +Q
Sbjct: 143 TNSANTSSENTTCNNSPVSSSTNYI--PNNSTSNVVLNSSIPTTSPNVLSAPNKKRQRDD 200
Query: 205 LTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKN 245
+ C + + + + ++N N++ ++ + N
Sbjct: 201 IDCGNNNNINNNNINNNINNNNNNNNNNNNNNNNNNNNNNN 241
>gb|EAA76187.1| hypothetical protein FG06992.1 [Gibberella zeae PH-1]
gi|46125229|ref|XP_387168.1| hypothetical protein
FG06992.1 [Gibberella zeae PH-1]
Length = 1526
Score = 38.5 bits (88), Expect = 0.18
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 158 SPTSELREITNVFVRT---SPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVAS 214
SP S LR++ N ++RT +P Q SP A + N + Q+ + SP + S
Sbjct: 539 SPASSLRKVMNPYIRTGQGAPGTSTSQGPSPLADISNMTPERNVDQEEYKRGFSPDYSPS 598
Query: 215 VEPVTPAVKKSSNTNSSKKSSQRGRP 240
V+ SN SK++ G P
Sbjct: 599 PNARITTVRSESNEQLSKRNQIDGTP 624
>ref|ZP_00239985.1| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus G9241]
gi|47568476|ref|ZP_00239176.1|
N-acetylmuramoyl-L-alanine amidase [Bacillus cereus
G9241] gi|47567406|ref|ZP_00238119.1|
N-acetylmuramoyl-L-alanine amidase [Bacillus cereus
G9241] gi|47556027|gb|EAL14365.1|
N-acetylmuramoyl-L-alanine amidase [Bacillus cereus
G9241] gi|47554867|gb|EAL13218.1|
N-acetylmuramoyl-L-alanine amidase [Bacillus cereus
G9241] gi|47554071|gb|EAL12437.1|
N-acetylmuramoyl-L-alanine amidase [Bacillus cereus
G9241]
Length = 499
Score = 38.5 bits (88), Expect = 0.18
Identities = 25/106 (23%), Positives = 46/106 (42%), Gaps = 2/106 (1%)
Query: 146 NRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPL 205
N LSG T TS TS ++ ++ + Q I ++ + + A++ + + Q
Sbjct: 278 NDLSGKMDTVVTSMTSTEDQLKDLEKQALQLQRIAEQEAQEKAAQEAAAQKQAEQAAKDA 337
Query: 206 TCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQPHP 251
P A+ P PA ++ + K+ ++ PK KP+P P
Sbjct: 338 QAQPAQAAA--PAQPAAPANNGGQAKKEEPKKEEPKKEDKKPEPTP 381
>ref|YP_022089.2| endopeptidase lyte, putative [Bacillus anthracis str. 'Ames
Ancestor'] gi|30265218|ref|NP_847595.1| endopeptidase
lytE, putative [Bacillus anthracis str. Ames]
gi|49188029|ref|YP_031282.1| endopeptidase lytE,
putative [Bacillus anthracis str. Sterne]
gi|30259895|gb|AAP29081.1| endopeptidase lytE, putative
[Bacillus anthracis str. Ames]
gi|47552107|gb|AAT34564.2| endopeptidase lytE, putative
[Bacillus anthracis str. 'Ames Ancestor']
gi|49181956|gb|AAT57332.1| endopeptidase lytE, putative
[Bacillus anthracis str. Sterne]
Length = 436
Score = 38.1 bits (87), Expect = 0.23
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 146 NRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPL 205
N LSG T TS TS ++ ++ + Q I ++ + + A++ + + Q
Sbjct: 211 NDLSGKMDTVVTSMTSTESQLKDLEKQALQLQRIAEQEAQEKAAQEAAAQKQAEQAAKDA 270
Query: 206 TCSPGHVASVEPVTPAVK--KSSNTNSSKKSSQRGRPKGSKNKPQPHP 251
P A +P PA ++ K+ ++ PK KP+P P
Sbjct: 271 QAQPAQAAPAQPAAPANNGGQAQKEEPKKEEPKKEAPKKEDKKPEPTP 318
>ref|ZP_00390124.1| COG3883: Uncharacterized protein conserved in bacteria [Bacillus
anthracis str. A2012]
Length = 431
Score = 38.1 bits (87), Expect = 0.23
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 146 NRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPL 205
N LSG T TS TS ++ ++ + Q I ++ + + A++ + + Q
Sbjct: 206 NDLSGKMDTVVTSMTSTESQLKDLEKQALQLQRIAEQEAQEKAAQEAAAQKQAEQAAKDA 265
Query: 206 TCSPGHVASVEPVTPAVK--KSSNTNSSKKSSQRGRPKGSKNKPQPHP 251
P A +P PA ++ K+ ++ PK KP+P P
Sbjct: 266 QAQPAQAAPAQPAAPANNGGQAQKEEPKKEEPKKEAPKKEDKKPEPTP 313
>gb|AAH92479.1| LRRC41 protein [Homo sapiens]
Length = 668
Score = 38.1 bits (87), Expect = 0.23
Identities = 25/73 (34%), Positives = 33/73 (44%), Gaps = 2/73 (2%)
Query: 175 PHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKS 234
P Q+ QR P +V S P SSQ F + S +VEP+ SS T ++
Sbjct: 524 PWQMFSQRIHPPLSVSWTSVPTASSQMGFWSSPSGWSAGAVEPLVTCA--SSKTGWTRMQ 581
Query: 235 SQRGRPKGSKNKP 247
SQ G+P G P
Sbjct: 582 SQPGKPSGGSGLP 594
>gb|AAD42189.1| serum opacity factor precursor [Streptococcus pyogenes]
gi|5353575|gb|AAD42188.1| serum opacity factor precursor
[Streptococcus pyogenes]
Length = 197
Score = 38.1 bits (87), Expect = 0.23
Identities = 29/101 (28%), Positives = 43/101 (41%), Gaps = 7/101 (6%)
Query: 129 TQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSAT 188
T NG +P T+ +G T A+S TS ++ + SP + +AT
Sbjct: 23 TTANGTADTIPNATTDAGGAAGSGTNGASSVTSSGGSQSSESAQASPQ-------AQTAT 75
Query: 189 VRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTN 229
V +AS+ + S +P S P TPA SSN+N
Sbjct: 76 VASASTTASPSSASASDVKAPRAATSSTPSTPAASTSSNSN 116
>emb|CAD21372.1| hypothetical protein [Neurospora crassa]
gi|32412342|ref|XP_326651.1| predicted protein
[Neurospora crassa] gi|28923071|gb|EAA32288.1| predicted
protein [Neurospora crassa]
Length = 948
Score = 37.4 bits (85), Expect = 0.39
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 129 TQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSAT 188
T T G G+ L++ + +TT+ SP++ ++ T+ ++S ++T
Sbjct: 56 TLTKGTGSAA--LSTVTRSAAPASTTATASPSTTTMTSSSSLTSTTS-----TKSSSAST 108
Query: 189 VRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQ 248
+++S E+SS Q L+ P V SVEP + + + S+ G P K PQ
Sbjct: 109 ESSSASTESSSAQTSTLSTRPSSVPSVEPTASSTTTPVTSGTPGTSAPAGAP-AEKESPQ 167
>emb|CAA20314.2| SPBC30B4.01c [Schizosaccharomyces pombe]
gi|48429243|sp|P87179|YB1E_SCHPO Serine-rich protein
C30B4.01c precursor
Length = 374
Score = 37.0 bits (84), Expect = 0.51
Identities = 42/192 (21%), Positives = 75/192 (38%), Gaps = 7/192 (3%)
Query: 56 IDSGYTSEEIEGWKNNLIVEGILFNENQIFDNYVQNQGTRYAVTGYSFNAQDLIQKSNNY 115
+D Y I G +N+ I N+ + + T L+ + Y
Sbjct: 53 LDPAYCYNNICGGSDNIAFVAIRNNQCYCGSTLTATEVSSSLCTTPCPGYGSLMCGGDLY 112
Query: 116 WPFYSLNLDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSP 175
W Y L + + T + +S + S +TT+ TSP+S ++ +S
Sbjct: 113 WSVY-LTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSS----SSS 167
Query: 176 HQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKK--SSNTNSSKK 233
+S S++ ++SS +SS + S +S P+T + SS+++SS
Sbjct: 168 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS 227
Query: 234 SSQRGRPKGSKN 245
SS RP S +
Sbjct: 228 SSSSSRPSSSSS 239
>gb|AAH58068.1| Serine/arginine repetitive matrix 1 [Danio rerio]
gi|47087423|ref|NP_998607.1| serine/arginine repetitive
matrix 1 [Danio rerio]
Length = 896
Score = 37.0 bits (84), Expect = 0.51
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 157 TSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQ---QCFPLTCSPGHVA 213
TSP+ R I V P + R SP R S ++S Q P + SP
Sbjct: 753 TSPSHSTRPIRRVSRTPEPRKSQRGSQSPPPERRQVSRSPSASPPPAQKRPASVSPSRST 812
Query: 214 SVEPVTPAVKKSS---NTNSSKKSSQRGRPKGSKNKPQPH 250
S P PA K SS + + +K S G K K K + H
Sbjct: 813 SRSPPPPAKKNSSVSPSPSPNKNSDAEGGKKKKKKKEKKH 852
Score = 33.1 bits (74), Expect = 7.4
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 158 SPTSELREITNVFVR-TSPHQIIRQRASPSA----------TVRNASSPETSSQQCFPLT 206
SP S+ R +V R TSP + + R SPS + +SP + Q+ +
Sbjct: 600 SPMSKRRTSPSVSKRRTSPSPVAKHRRSPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPS 659
Query: 207 CSPGHVASVEPVTP-----AVKKSSNTNSSKK----SSQRGRPKGSKNKPQP 249
P H S PVT + K+S T+ K+ SS P+ +N P P
Sbjct: 660 PMPKHRGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHRRNSPNP 711
>emb|CAD37326.1| attachment protein [Respiratory syncytial virus]
Length = 114
Score = 37.0 bits (84), Expect = 0.51
Identities = 30/121 (24%), Positives = 50/121 (40%), Gaps = 9/121 (7%)
Query: 128 LTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSA 187
+ T+ I A + F+ S ++++ T T + IT F + SP +R SPS
Sbjct: 1 IISTSLIIAAIIFIISANHKVTLTTVTVQTIKNHTEKNITTYFTQVSP-----ERVSPSK 55
Query: 188 TVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKP 247
+ T+S P T S H + + +++ KK S + RPK KP
Sbjct: 56 QPTTSPPIHTNSATISPNTKSETHHTTAQ----TKGRATTPTQXKKPSTKPRPKNPPKKP 111
Query: 248 Q 248
+
Sbjct: 112 E 112
>ref|XP_641173.1| dynactin 150 kDa subunit [Dictyostelium discoideum]
gi|60469201|gb|EAL67196.1| dynactin 150 kDa subunit
[Dictyostelium discoideum]
Length = 1539
Score = 37.0 bits (84), Expect = 0.51
Identities = 37/133 (27%), Positives = 50/133 (36%), Gaps = 30/133 (22%)
Query: 142 TSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQ 201
T+ + S TT+ T+PTS +++ + +R R PS+T S+ TS
Sbjct: 151 TTSSSSSSSSTTTTTTTPTSSIKKPSESGIR-------RPSTIPSSTTTTTSTTSTSPTS 203
Query: 202 CFPLTC---------SPGHVASVEPVTPAV-------------KKSSNTNSSKKSSQRGR 239
PLT SP ++ P P V K S SS S G
Sbjct: 204 TSPLTSPPPEKKSEPSPPTTTTISPPPPTVVEPTPIEQPQPTPSKISRPPSSASSRPTGI 263
Query: 240 PKGSKNK-PQPHP 251
PK S K P P P
Sbjct: 264 PKPSGLKEPTPTP 276
>ref|XP_638001.1| hypothetical protein DDB0186746 [Dictyostelium discoideum]
gi|60466437|gb|EAL64492.1| hypothetical protein
DDB0186746 [Dictyostelium discoideum]
Length = 970
Score = 37.0 bits (84), Expect = 0.51
Identities = 25/89 (28%), Positives = 41/89 (45%), Gaps = 5/89 (5%)
Query: 143 SQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQC 202
S+ L T S + +E+ +N+ + P Q +SP T N SSP SS Q
Sbjct: 293 SKSQSLDNILTNSNNNNNNEITISSNIPIPLPP-----QSSSPPPTRNNQSSPSPSSPQQ 347
Query: 203 FPLTCSPGHVASVEPVTPAVKKSSNTNSS 231
+ +P + P +P + SS+T+S+
Sbjct: 348 QNIMPTPPSTSLTPPQSPTLSPSSSTHST 376
>emb|CAB09116.1| SPBC3D6.14c [Schizosaccharomyces pombe]
gi|19112318|ref|NP_595526.1| hypothetical protein
SPBC3D6.14c [Schizosaccharomyces pombe 972h-]
Length = 309
Score = 36.6 bits (83), Expect = 0.67
Identities = 33/133 (24%), Positives = 58/133 (42%), Gaps = 7/133 (5%)
Query: 115 YWPFYSLNLDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTS 174
YW Y L + + T + +S + S +TT+ TSP+S ++ +S
Sbjct: 47 YWSVY-LTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSS----SS 101
Query: 175 PHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKK--SSNTNSSK 232
+S S++ ++SS +SS + S +S P+T + SS+++SS
Sbjct: 102 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSS 161
Query: 233 KSSQRGRPKGSKN 245
SS RP S +
Sbjct: 162 SSSSSSRPSSSSS 174
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,809,603
Number of Sequences: 2540612
Number of extensions: 16801859
Number of successful extensions: 66872
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 66560
Number of HSP's gapped (non-prelim): 462
length of query: 251
length of database: 863,360,394
effective HSP length: 125
effective length of query: 126
effective length of database: 545,783,894
effective search space: 68768770644
effective search space used: 68768770644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0019b.10