BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0018.1
(127 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61070.1| RNA-binding protein, putative [Arabidopsis thaliana] 76 2e-13
ref|NP_564591.1| RNA-binding protein, putative [Arabidopsis thal... 76 2e-13
gb|AAG52616.1| RNA-binding protein, putative; 35994-37391 [Arabi... 75 4e-13
gb|AAS90636.2| unknown protein [Oryza sativa (japonica cultivar-... 65 5e-10
gb|AAT77901.1| putative RNA binding motif protein [Oryza sativa ... 64 1e-09
gb|AAU10777.1| unknown protein [Oryza sativa (japonica cultivar-... 63 1e-09
emb|CAC85245.1| salt tolerance protein 4 [Beta vulgaris] 57 8e-08
gb|AAH90261.1| Zgc:110525 [Danio rerio] gi|61651846|ref|NP_00101... 54 7e-07
emb|CAF96244.1| unnamed protein product [Tetraodon nigroviridis] 52 4e-06
pir||JC7836 RNA-binding motif protein 8, RBM8 - Japanese medaka ... 52 4e-06
dbj|BAB92097.1| RNA binding motif protein 8 [Oryzias latipes] 52 4e-06
gb|AAV38252.1| RNA binding motif protein 8A [synthetic construct... 51 6e-06
gb|AAG16782.1| RNA binding motif protein 8B [Homo sapiens] gi|10... 51 7e-06
ref|XP_619704.1| PREDICTED: similar to RNA-binding protein 8A (R... 51 7e-06
gb|AAH58376.1| RNA binding motif protein 8a [Mus musculus] gi|18... 51 7e-06
ref|XP_215637.1| PREDICTED: similar to RNA-binding protein 8A (R... 51 7e-06
gb|AAH56659.1| MGC68591 protein [Xenopus laevis] 51 7e-06
ref|NP_080151.1| RNA binding motif protein 8a [Mus musculus] gi|... 51 7e-06
gb|AAG27092.1| RNA-binding protein Y14 [Xenopus laevis] gi|49118... 51 7e-06
ref|XP_395245.2| PREDICTED: similar to CG8781-PA [Apis mellifera] 50 9e-06
>gb|AAM61070.1| RNA-binding protein, putative [Arabidopsis thaliana]
Length = 202
Score = 75.9 bits (185), Expect = 2e-13
Identities = 37/53 (69%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPI-NESIRRKNARH 52
GYALIEYE+ EEA++AI +NG+ELLTQN+ VDWAFSSGP ES RRKN+R+
Sbjct: 137 GYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGESYRRKNSRY 189
>ref|NP_564591.1| RNA-binding protein, putative [Arabidopsis thaliana]
Length = 202
Score = 75.9 bits (185), Expect = 2e-13
Identities = 37/53 (69%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPI-NESIRRKNARH 52
GYALIEYE+ EEA++AI +NG+ELLTQN+ VDWAFSSGP ES RRKN+R+
Sbjct: 137 GYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGESYRRKNSRY 189
>gb|AAG52616.1| RNA-binding protein, putative; 35994-37391 [Arabidopsis thaliana]
gi|25405472|pir||E96553 probable RNA-binding protein
35994-37391 [imported] - Arabidopsis thaliana
Length = 191
Score = 75.1 bits (183), Expect = 4e-13
Identities = 37/52 (71%), Positives = 44/52 (84%), Gaps = 1/52 (1%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPI-NESIRRKNAR 51
GYALIEYE+ EEA++AI +NG+ELLTQN+ VDWAFSSGP ES RRKN+R
Sbjct: 137 GYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGESYRRKNSR 188
>gb|AAS90636.2| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 106
Score = 64.7 bits (156), Expect = 5e-10
Identities = 32/52 (61%), Positives = 39/52 (74%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARH 52
GYALIEYE EEA+ AI+ L+G+ELLTQ I VDWAFS+GP+ RK+ H
Sbjct: 55 GYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFSNGPVKRRNIRKSRNH 106
>gb|AAT77901.1| putative RNA binding motif protein [Oryza sativa (japonica
cultivar-group)]
Length = 197
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/43 (62%), Positives = 36/43 (82%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINE 43
GYAL+EYE EEA+ AI+ +NG++LLT+ +YVDWAFS GPI +
Sbjct: 132 GYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFSRGPIQK 174
>gb|AAU10777.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 116
Score = 63.2 bits (152), Expect = 1e-09
Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPI-NESIRRKNAR 51
GYALIEYE EEA+ AI+ L+G+ELLTQ I VDWAFS+GP+ +IR+++ R
Sbjct: 55 GYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFSNGPVKRRNIRKRSPR 106
>emb|CAC85245.1| salt tolerance protein 4 [Beta vulgaris]
Length = 203
Score = 57.4 bits (137), Expect = 8e-08
Identities = 29/51 (56%), Positives = 37/51 (71%), Gaps = 3/51 (5%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNAR 51
GYALIEYE+ EEA+ AI+ +NG+++L Q I VDWAF +GP RR N R
Sbjct: 141 GYALIEYEKFEEAQAAIKEMNGAKMLEQPINVDWAFCNGPYR---RRGNRR 188
>gb|AAH90261.1| Zgc:110525 [Danio rerio] gi|61651846|ref|NP_001013363.1|
hypothetical protein LOC503767 [Danio rerio]
Length = 174
Score = 54.3 bits (129), Expect = 7e-07
Identities = 28/55 (50%), Positives = 35/55 (62%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GYAL+EYE +EA+ A+E LNG EL+ Q I VDW F GP R R+ +R P
Sbjct: 115 GYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGPPKSKRRGGRRRSRSP 169
>emb|CAF96244.1| unnamed protein product [Tetraodon nigroviridis]
Length = 175
Score = 51.6 bits (122), Expect = 4e-06
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGP 40
GYAL+EYE +EA+ A+E LNG +++ Q+I VDW F GP
Sbjct: 115 GYALVEYETYKEAQAAMEGLNGQDMMGQSISVDWGFVRGP 154
>pir||JC7836 RNA-binding motif protein 8, RBM8 - Japanese medaka
gi|20804379|dbj|BAB92096.1| RNA binding motif protein 8
[Oryzias latipes]
Length = 173
Score = 51.6 bits (122), Expect = 4e-06
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR---RKNARHP 53
GYAL+EYE +EA+ A+E LN +L+ Q + VDWAF GP R R+ +R P
Sbjct: 113 GYALVEYETYKEAQAAMEGLNAQDLMGQPVSVDWAFVRGPPKNKRRTGGRRRSRSP 168
>dbj|BAB92097.1| RNA binding motif protein 8 [Oryzias latipes]
Length = 172
Score = 51.6 bits (122), Expect = 4e-06
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR---RKNARHP 53
GYAL+EYE +EA+ A+E LN +L+ Q + VDWAF GP R R+ +R P
Sbjct: 112 GYALVEYETYKEAQAAMEGLNAQDLMGQPVSVDWAFVRGPPKNKRRTGGRRRSRSP 167
>gb|AAV38252.1| RNA binding motif protein 8A [synthetic construct]
gi|61365985|gb|AAX42795.1| RNA binding motif protein 8A
[synthetic construct]
Length = 175
Score = 51.2 bits (121), Expect = 6e-06
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP + R R+ +R P
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGNRRGGRRRSRSP 169
>gb|AAG16782.1| RNA binding motif protein 8B [Homo sapiens]
gi|10197630|gb|AAG14951.1| MDS014 [Homo sapiens]
Length = 158
Score = 50.8 bits (120), Expect = 7e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP R R+ +R P
Sbjct: 99 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSP 153
>ref|XP_619704.1| PREDICTED: similar to RNA-binding protein 8A (RNA binding motif
protein 8A) (Ribonucleoprotein RBM8A) [Mus musculus]
Length = 174
Score = 50.8 bits (120), Expect = 7e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP R R+ +R P
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSP 169
>gb|AAH58376.1| RNA binding motif protein 8a [Mus musculus]
gi|18044867|gb|AAH20086.1| RNA binding motif protein 8a
[Mus musculus] gi|7158824|gb|AAF37551.1| RNA binding
motif protein 8 [Homo sapiens]
gi|10436078|gb|AAG16781.1| RNA binding motif protein 8A
[Homo sapiens] gi|12845611|dbj|BAB26820.1| unnamed
protein product [Mus musculus]
Length = 173
Score = 50.8 bits (120), Expect = 7e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP R R+ +R P
Sbjct: 114 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSP 168
>ref|XP_215637.1| PREDICTED: similar to RNA-binding protein 8A (RNA binding motif
protein 8A) (Ribonucleoprotein RBM8A) [Rattus
norvegicus] gi|57098771|ref|XP_533035.1| PREDICTED:
similar to RNA-binding protein 8A (RNA binding motif
protein 8A) (Ribonucleoprotein RBM8A) [Canis familiaris]
gi|49456567|emb|CAG46604.1| RBM8A [Homo sapiens]
gi|60814764|gb|AAX36317.1| RNA binding motif protein 8A
[synthetic construct] gi|47940441|gb|AAH71577.1| RNA
binding motif protein 8A [Homo sapiens]
gi|16877694|gb|AAH17088.1| RNA binding motif protein 8A
[Homo sapiens] gi|16589052|gb|AAL26999.1|
ribonucleoprotein RBM8 [Homo sapiens]
gi|47117302|sp|Q9CWZ3|RBM8A_MOUSE RNA-binding protein 8A
(RNA binding motif protein 8A) (Ribonucleoprotein RBM8A)
gi|10720244|sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A
(RNA binding motif protein 8A) (Ribonucleoprotein RBM8A)
(RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1)
gi|6841450|gb|AAF29078.1| HSPC114 [Homo sapiens]
gi|11034805|gb|AAG27091.1| RNA-binding protein Y14 [Homo
sapiens] gi|26350107|dbj|BAC38693.1| unnamed protein
product [Mus musculus] gi|4455129|gb|AAD21089.1|
ribonucleoprotein RBM8 [Homo sapiens]
gi|4826972|ref|NP_005096.1| RNA binding motif protein 8A
[Homo sapiens]
Length = 174
Score = 50.8 bits (120), Expect = 7e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP R R+ +R P
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSP 169
>gb|AAH56659.1| MGC68591 protein [Xenopus laevis]
Length = 174
Score = 50.8 bits (120), Expect = 7e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GYAL+EYE +EA A+E LNG +L+ Q + VDW F GP R R+ +R P
Sbjct: 115 GYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKGKRRSGRRRSRSP 169
>ref|NP_080151.1| RNA binding motif protein 8a [Mus musculus]
gi|12845066|dbj|BAB26605.1| unnamed protein product [Mus
musculus]
Length = 173
Score = 50.8 bits (120), Expect = 7e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP R R+ +R P
Sbjct: 114 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSP 168
>gb|AAG27092.1| RNA-binding protein Y14 [Xenopus laevis] gi|49118357|gb|AAH73361.1|
Rbm8 protein [Xenopus laevis]
Length = 174
Score = 50.8 bits (120), Expect = 7e-06
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GYAL+EYE +EA A+E LNG +L+ Q + VDW F GP R R+ +R P
Sbjct: 115 GYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKGKRRSGRRRSRSP 169
>ref|XP_395245.2| PREDICTED: similar to CG8781-PA [Apis mellifera]
Length = 166
Score = 50.4 bits (119), Expect = 9e-06
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNAR 51
GYAL+EYE +EA+ A + LNG+E+L Q I VDW F GP + I++++ R
Sbjct: 116 GYALVEYETFKEAQAAKDALNGTEILGQPISVDWCFVKGP--KKIKKRSHR 164
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,529,278
Number of Sequences: 2540612
Number of extensions: 8563545
Number of successful extensions: 21410
Number of sequences better than 10.0: 639
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 20444
Number of HSP's gapped (non-prelim): 1119
length of query: 127
length of database: 863,360,394
effective HSP length: 103
effective length of query: 24
effective length of database: 601,677,358
effective search space: 14440256592
effective search space used: 14440256592
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0018.1