BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0016.9
(219 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 73 5e-12
ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (j... 73 6e-12
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 70 5e-11
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 69 7e-11
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 69 7e-11
gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (jap... 69 9e-11
ref|XP_475066.1| hypothetical protein [Oryza sativa (japonica cu... 67 3e-10
gb|AAW56933.1| hypothetical protein [Oryza sativa (japonica cult... 67 3e-10
gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cult... 66 8e-10
ref|XP_472382.1| OSJNBb0118P14.10 [Oryza sativa (japonica cultiv... 64 2e-09
gb|AAP52227.1| putative reverse transcriptase [Oryza sativa (jap... 64 3e-09
emb|CAE01924.2| OSJNBb0078D11.8 [Oryza sativa (japonica cultivar... 63 7e-09
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 62 1e-08
gb|AAX95598.1| hypothetical protein [Oryza sativa (japonica cult... 62 1e-08
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 62 1e-08
gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (jap... 61 3e-08
ref|NP_909894.1| putative reverse transcriptase [Oryza sativa (j... 61 3e-08
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 60 6e-08
gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|2540301... 59 1e-07
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 58 2e-07
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 73.2 bits (178), Expect = 5e-12
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKIDR 62
GDFN I ++ N N F+ ++ L ++PL N +FTW + R K+DR
Sbjct: 144 GDFNMIYRARDKNNSNLNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDR 203
Query: 63 WLVNDEAILQFDG------ATQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVE 116
N+E L F T +DH P+ L+ P+ F F N+W GFK V+
Sbjct: 204 CFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGPHRPRTFKFENFWTRVPGFKDKVK 263
Query: 117 EWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIK 159
+ WS L QKL+ V +R+W +GI K++
Sbjct: 264 DIWSQPSSHTEPMHRLNQKLQHTAVGLRDW--TKGICSEAKLQ 304
>ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29893671|gb|AAP06925.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 870
Score = 72.8 bits (177), Expect = 6e-12
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKIDR 62
GDFN I ++ N N F+ ++ L ++PL N +FTW + R K+DR
Sbjct: 144 GDFNMIYRARDKNNSNLNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDR 203
Query: 63 WLVNDEAILQFDG------ATQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVE 116
N+E L F T +DH P+ L+ P+ F F N+W GFK V+
Sbjct: 204 CFCNEEWDLAFPHHVLHALPTGPSDHCPLVLSNPQGPHRPRTFKFENFWTRVPGFKDKVK 263
Query: 117 EWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIK 159
+ WS L QKL+ V +R+W +GI K++
Sbjct: 264 DIWSQPSSHTEPMHRLNQKLQRTAVGLRDW--TKGICSEAKLQ 304
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 69.7 bits (169), Expect = 5e-11
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 1 IGGDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKI 60
I GD+N L ER ++ G F++F+ LI++ FTW RG SK+
Sbjct: 8 IMGDYNETLIPAERGSHLISSQGARDFQNFINNMGLIEISPIKGFFTW--FRGQSK-SKL 64
Query: 61 DRWLVNDEAILQFDGATQS------ADHRPVSLALGSH-DFGPKPFCFFNYWLMEDGFKK 113
DR V E + F + +DH P+ LA SH ++GPKPF F N WL K
Sbjct: 65 DRLFVQPEWLTSFPSLKLNILKRSPSDHCPL-LAFSSHQNWGPKPFRFLNCWLTHPQCMK 123
Query: 114 MVEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIKGLEDNLH 166
++ E W+ N ++ KL+ LK +++W + + IK E+ +H
Sbjct: 124 IISEIWTKN-----HNSSVPDKLRTLKEALKQWNQKEFGIIDDNIKHCEEKIH 171
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 69.3 bits (168), Expect = 7e-11
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVH-FKHFVETYALIDLPLGNDEFTWGSTRGDG-LWSKI 60
GDFN IL++GE+ G + D F ++ L+++P + FTW RGD + ++
Sbjct: 101 GDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWIQCRL 160
Query: 61 DRWLVNDEAILQFDGATQS------ADHRPVSLAL-GSHDFGPKPFCFFNYWLMEDGFKK 113
DR N E F + Q+ +DHRPV + L S D F F +L ++ K+
Sbjct: 161 DRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKE 220
Query: 114 MVEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIKGLEDNLHEGECLVT 173
+ WS + +N ++ +L+ + + WK+ + +KI LE L + + LV
Sbjct: 221 AIIRTWSRG--KHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQSLVW 278
Query: 174 KI 175
I
Sbjct: 279 PI 280
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 69.3 bits (168), Expect = 7e-11
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVH-FKHFVETYALIDLPLGNDEFTWGSTRGDG-LWSKI 60
GDFN IL++GE+ G + D F ++ L+++P + FTW RGD + ++
Sbjct: 98 GDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWIQCRL 157
Query: 61 DRWLVNDEAILQFDGATQS------ADHRPVSLAL-GSHDFGPKPFCFFNYWLMEDGFKK 113
DR N E F + Q+ +DHRPV + L S D F F +L ++ K+
Sbjct: 158 DRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKE 217
Query: 114 MVEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIKGLEDNLHEGECLVT 173
+ WS + +N ++ +L+ + + WK+ + +KI LE L + + LV
Sbjct: 218 AIIRTWSRG--KHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQSLVW 275
Query: 174 KI 175
I
Sbjct: 276 PI 277
>gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|34896522|ref|NP_909605.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1556
Score = 68.9 bits (167), Expect = 9e-11
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 10/186 (5%)
Query: 1 IGGDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKI 60
+GG FN + N E+ N N F ++T L +L FTW + + + K+
Sbjct: 918 VGGVFNILRNPQEKNNDNFNDRWPFLFNAVIDTLNLRELESSGRSFTWANHLQNQTFEKL 977
Query: 61 DRWLVNDEAILQFDGATQS------ADHRPVSLALGSHDFGPKP-FCFFNYWLMEDGFKK 113
DR LV+ E +F +T S +DH P+ G +P F F WL DGF
Sbjct: 978 DRILVSTEFETKFPLSTVSILTREISDHTPLLYNSGGASAAYQPQFKFELGWLRRDGFSD 1037
Query: 114 MVEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIKGLEDNLHEGECLVT 173
+V+E W +EG +K++ L+ +R W +N I G+ K K ++ L + + LV
Sbjct: 1038 IVKEVWQGVSIEGTPLERWQRKIRRLRQFLRGWAKN--ITGAYK-KEKKELLDKLDTLVK 1094
Query: 174 KIKDSL 179
K + ++
Sbjct: 1095 KAEHTI 1100
>ref|XP_475066.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 959
Score = 67.4 bits (163), Expect = 3e-10
Identities = 42/154 (27%), Positives = 74/154 (47%), Gaps = 6/154 (3%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKIDR 62
GDFN + ++G++ N N F+ ++ L ++ +TW S + +KID+
Sbjct: 232 GDFNLLASEGDKNNGNVNRRLINKFRQTIDVLELREVYQFRRRYTWSSEQEQPTLTKIDK 291
Query: 63 WLVNDEAILQFDGA------TQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVE 116
L+N E F A + ++DH P+ LA + P+ + F ++W DGF+++V
Sbjct: 292 VLINGEWEEIFQDAHLQALSSSASDHCPLLLACDNMMHRPRKYKFESFWTKLDGFEEVVR 351
Query: 117 EWWSSAVVEGWSNFALMQKLKGLKVKIREWKENR 150
+ W++A S +L KLK +R W R
Sbjct: 352 QAWAAAPSGSNSVSSLHLKLKSTATSLRSWGARR 385
>gb|AAW56933.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1750
Score = 67.4 bits (163), Expect = 3e-10
Identities = 42/154 (27%), Positives = 74/154 (47%), Gaps = 6/154 (3%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKIDR 62
GDFN + ++G++ N N F+ ++ L ++ +TW S + +KID+
Sbjct: 232 GDFNLLASEGDKNNGNVNRRLINKFRQTIDVLELREVYQFRRRYTWSSEQEQPTLTKIDK 291
Query: 63 WLVNDEAILQFDGA------TQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVE 116
L+N E F A + ++DH P+ LA + P+ + F ++W DGF+++V
Sbjct: 292 VLINGEWEEIFQDAHLQALSSSASDHCPLLLACDNMMHRPRKYKFESFWTKLDGFEEVVR 351
Query: 117 EWWSSAVVEGWSNFALMQKLKGLKVKIREWKENR 150
+ W++A S +L KLK +R W R
Sbjct: 352 QAWAAAPSGSNSVSSLHLKLKSTATSLRSWGARR 385
>gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1237
Score = 65.9 bits (159), Expect = 8e-10
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 1 IGGDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKI 60
IGGDFN + + E+ N + F ++ L ++ + FTW + + + K+
Sbjct: 778 IGGDFNILRSHDEKNNDNYDDRWPFLFNAIIDGLCLREIQMSGRNFTWANNLANPTYEKL 837
Query: 61 DRWLVNDEAILQFDGATQSA------DHRPVSLALGSHDF--GPKPFCFFNYWLMEDGFK 112
DR L++ E +F ++ A DH P+ L S F F WL+ DGF
Sbjct: 838 DRVLMSTEWEQKFPLSSVVALNRDISDHTPLPLNTNSSSLSNAQHSFKFELGWLLRDGFV 897
Query: 113 KMVEEWWSSAVVEGWSNFALMQ-KLKGLKVKIREW-KENRGIRGSEKIKGLE 162
+MV+E WSS V EG + Q K++ L+ +R W K + G+ EK K L+
Sbjct: 898 EMVKEIWSS-VDEGNTAMERWQAKIRRLRQHLRGWSKHSSGLYKKEKKKILD 948
>ref|XP_472382.1| OSJNBb0118P14.10 [Oryza sativa (japonica cultivar-group)]
gi|38569170|emb|CAE05360.3| OJ000315_02.5 [Oryza sativa
(japonica cultivar-group)] gi|38346150|emb|CAD40674.2|
OSJNBb0118P14.10 [Oryza sativa (japonica
cultivar-group)]
Length = 934
Score = 64.3 bits (155), Expect = 2e-09
Identities = 40/155 (25%), Positives = 70/155 (44%), Gaps = 6/155 (3%)
Query: 1 IGGDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKI 60
IG DFN + + E+ + F +E L ++ L +FTW + + K+
Sbjct: 592 IGVDFNILRQENEKNKRGGVNKWSLMFNSIIENANLREMALEGKKFTWANNKQSVTLEKL 651
Query: 61 DRWLVNDEAILQFDGATQS------ADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKM 114
DR L ND+ ++F A +DH P+ + + + F F N WLM + +
Sbjct: 652 DRILFNDKWEIKFPLACGRVLERIYSDHTPLLINVEGEKWLSPLFKFENSWLMREDINTV 711
Query: 115 VEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKEN 149
VE+ W+S + G S +L+ ++ K++ W N
Sbjct: 712 VEQVWNSCNINGSSIDKWQWRLQKMRKKLKGWNMN 746
>gb|AAP52227.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37531276|ref|NP_919940.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|22655786|gb|AAN04203.1| Putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|22655726|gb|AAN04143.1| Putative
reverse transcriptase [Oryza sativa]
Length = 773
Score = 63.9 bits (154), Expect = 3e-09
Identities = 42/154 (27%), Positives = 71/154 (45%), Gaps = 6/154 (3%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKIDR 62
GDFN + DG++ N N F+H ++ L ++ L +TW + + +KID+
Sbjct: 597 GDFNLLATDGDKNNGNVNRRLISKFRHTIDALELREVYLFGRRYTWSNEQERPTLTKIDK 656
Query: 63 WLVNDEAILQFDGA------TQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVE 116
LVN + F A + ++DH P+ LA P+ F F +YW + F+ +V
Sbjct: 657 VLVNGDWEEIFRDAHLQALSSSASDHCPLLLACDQMMHRPRKFKFESYWAKLEDFEDVVC 716
Query: 117 EWWSSAVVEGWSNFALMQKLKGLKVKIREWKENR 150
+ W +A + +L KL+ +R W R
Sbjct: 717 QAWEAAPAGSNALSSLHFKLRATAAALRSWGARR 750
>emb|CAE01924.2| OSJNBb0078D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50927957|ref|XP_473506.1| OSJNBb0078D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1636
Score = 62.8 bits (151), Expect = 7e-09
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 1 IGGDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKI 60
I GDFN + + ++ N + F+ + L +L L FTW S + +KI
Sbjct: 976 IVGDFNLLAAESDKNNQNVDRRMINRFRCLLNLLELRELYLFGRRFTWSSEQESPTLTKI 1035
Query: 61 DRWLVNDEAILQFDGA------TQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKM 114
D+ LVN E F A + ++DH P+ LA + P+ F F +WL DGF ++
Sbjct: 1036 DKVLVNAEWEDFFRDAHLQALSSSASDHCPLLLACDAMVHRPRRFKFEAFWLHLDGFDEI 1095
Query: 115 VEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKENR 150
V W SA + +L KLK ++ W +R
Sbjct: 1096 VRAAWESAPAGSNAFSSLHFKLKATATALKPWGAHR 1131
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 62.0 bits (149), Expect = 1e-08
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 1 IGGDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKI 60
IGGDFN I N E+ N F +++ L ++ L +FTW ++ + + K+
Sbjct: 863 IGGDFNIIRNPMEKNNERYNDRWPFLFNVVIDSLNLREILLSGCKFTWANSMPNPTYEKL 922
Query: 61 DRWLVNDEAILQFDGATQSA------DHRPVSL--ALGSHDFGPKPFCFFNYWLMEDGFK 112
DR LV+ E + T A DH P+ L G+H F F WL+ D F+
Sbjct: 923 DRVLVSTEWETKNPLVTVHALCRDLSDHTPLVLDTGKGTHRNAQPLFKFELGWLLRDDFQ 982
Query: 113 KMVEEWWSSAV-----VEGWSNFALMQKLKGLKVKIREWKEN 149
++ E WS + +E W N K++ L+ +R W +N
Sbjct: 983 NLLVEIWSKDIQGATNIERWQN-----KIRRLRQFLRGWVKN 1019
>gb|AAX95598.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 62.0 bits (149), Expect = 1e-08
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKIDR 62
GDFN I ++ LN N F+ + L ++ L N ++TWG+ R K+DR
Sbjct: 102 GDFNLIYEARDKNNLNLNRSLMGQFRAALNRNGLKEIRLQNRKYTWGNEREQATLVKLDR 161
Query: 63 WLVNDEAILQFDG------ATQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVE 116
+ + L F +T +DH P+ L F F N+W+ GF K V
Sbjct: 162 VFCSCQGDLLFTNFLLQAMSTSFSDHCPLLLLNADRPRRKAHFNFENFWIKLPGFLKQVT 221
Query: 117 EWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIKGLEDNLHEGECLVTKI 175
E W + L +KL + +R+W K+ GLE+ + G + K+
Sbjct: 222 ETWERE-TGSLNPVRLSKKLSNTTLALRKWSRT-------KLGGLENGVPHGAGINPKV 272
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 61.6 bits (148), Expect = 1e-08
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 31 VETYALIDLPLGNDEFTWGSTRGDGLWSKIDRWLVNDEAILQFDG------ATQSADHRP 84
++ L ++PL N +FTW + R K+DR N+E L F T +DH P
Sbjct: 6 IDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHAFPTGPSDHCP 65
Query: 85 VSLALGSHDFGPKPFCFFNYWLMEDGFKKMVEEWWSSAVVEGWSNFALMQKLKGLKVKIR 144
+ L+ P+ F F N+W GFK V++ WS L QKL+ V +R
Sbjct: 66 LVLSNPQGPHRPRTFKFENFWTRVPGFKDKVKDIWSQPSSHTEPMHHLNQKLQRTAVGLR 125
Query: 145 EWKENRGIRGSEKIK 159
+W +GI K++
Sbjct: 126 DW--TKGICSEAKLQ 138
>gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918535|ref|XP_469664.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|40539049|gb|AAR87306.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1014
Score = 60.8 bits (146), Expect = 3e-08
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 1 IGGDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKI 60
I GDFN I ++ LN + FK + L +L L N FTW + R K+
Sbjct: 75 IMGDFNLIYEARDKNNLNLDRRLMGRFKAAINRCELRELRLQNRRFTWSNERDAPTLEKL 134
Query: 61 DRWLVNDEAILQFDG------ATQSADHRPVSLALGSHDFGPKP-FCFFNYWLMEDGFKK 113
DR N + + F ++ ++DH P+ L+ +H KP F F N+W GF
Sbjct: 135 DRIFCNPDGDMLFSNHNLQALSSSNSDHCPLLLS-PTHQLLRKPTFRFENFWPRPPGFLD 193
Query: 114 MVEEWWSSAVVEGWSNFALMQKLKGLKVKIREW 146
V+ WS V L KLK +R W
Sbjct: 194 TVQTAWSQPVSASHPVKRLSSKLKATAKALRSW 226
>ref|NP_909894.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|12957722|gb|AAK09240.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1135
Score = 60.8 bits (146), Expect = 3e-08
Identities = 38/124 (30%), Positives = 56/124 (44%), Gaps = 6/124 (4%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDGLWSKIDR 62
GDFN I ++ N N F+ ++ L ++PL N FTW + R K+D
Sbjct: 247 GDFNMIYRARDKNNGNLNLARMRRFRATIDRCELREIPLQNKRFTWSNERQRPTLVKLDH 306
Query: 63 WLVNDEAILQFDG------ATQSADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVE 116
N+ L F T +DH P+ L+ + P+PF F N+W GFK MV+
Sbjct: 307 CFCNENWDLAFHHHVLHALPTGPSDHCPLVLSNPAAPCKPRPFRFENFWTRISGFKDMVK 366
Query: 117 EWWS 120
W+
Sbjct: 367 ASWT 370
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana] gi|7488321|pir||T01871
RNA-directed DNA polymerase homolog T24M8.8 -
Arabidopsis thaliana
Length = 1164
Score = 59.7 bits (143), Expect = 6e-08
Identities = 52/174 (29%), Positives = 78/174 (43%), Gaps = 12/174 (6%)
Query: 3 GDFNAILNDGERK---GLNSNTYGDVHFKHFVETYALIDLPLGNDEFTWGSTRGDG-LWS 58
GDFN IL+ E G N + + F+ + +L DL + FTW + R +
Sbjct: 40 GDFNQILHPSEHSTSDGFNVDRPTRI-FRETILLASLTDLSFRGNTFTWWNKRSRAPVAK 98
Query: 59 KIDRWLVNDEAILQFD------GATQSADHRPVSLALGSHD-FGPKPFCFFNYWLMEDGF 111
K+DR LVND+ F G +DH L+L S KPF F N+ L ++ F
Sbjct: 99 KLDRILVNDKWTTTFPSSLGLFGEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENF 158
Query: 112 KKMVEEWWSSAVVEGWSNFALMQKLKGLKVKIREWKENRGIRGSEKIKGLEDNL 165
++ W S V G + + + KLK LK IR++ + ++ K D L
Sbjct: 159 LSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRTKEAHDAL 212
>gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|25403016|pir||D86384
unknown protein [imported] - Arabidopsis thaliana
Length = 1213
Score = 58.5 bits (140), Expect = 1e-07
Identities = 50/155 (32%), Positives = 70/155 (44%), Gaps = 12/155 (7%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVHFKHFVETYA---LIDLPLGNDEFTW-GSTRGDGLWS 58
GDFN +LN E S D++ + F + L DL + FTW + +
Sbjct: 143 GDFNQVLNPQEHSNPVSLNV-DINMRDFRDCLLAAELSDLRYKGNTFTWWNKSHTTPVAK 201
Query: 59 KIDRWLVNDE------AILQFDGATQSADHRPVSLALGSHDFGPK-PFCFFNYWLMEDGF 111
KIDR LVND + L G+ +DH + L K PF FFNY L F
Sbjct: 202 KIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDF 261
Query: 112 KKMVEEWWSSAVVEGWSNFALMQKLKGLKVKIREW 146
+V + W + V G S F + +KLK LK I+++
Sbjct: 262 LNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDF 296
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 58.2 bits (139), Expect = 2e-07
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 3 GDFNAILNDGERKGLNSNTYGDVH-FKHFVETYALIDLPLGNDEFTW-GSTRGDGLWSKI 60
GDFN ILN +N+N + F+ + L DL +TW L KI
Sbjct: 143 GDFNQILNP--ESAINANIGRKIRAFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKI 200
Query: 61 DRWLVNDEAILQFDGATQS------ADHRPVSLALGSHDFGPK-PFCFFNYWLMEDGFKK 113
DR LVND F A + +DH + L K PF FFNY+L F +
Sbjct: 201 DRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQ 260
Query: 114 MVEEWWSSAVVEGWSNFALMQKLKGLKVKI 143
++ E W S V G + + + +KLK LK+ I
Sbjct: 261 LIRENWYSCNVSGSAMYRVSKKLKHLKLPI 290
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.329 0.145 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,397,745
Number of Sequences: 2540612
Number of extensions: 16232270
Number of successful extensions: 38688
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 38562
Number of HSP's gapped (non-prelim): 119
length of query: 219
length of database: 863,360,394
effective HSP length: 123
effective length of query: 96
effective length of database: 550,865,118
effective search space: 52883051328
effective search space used: 52883051328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0016.9