BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0016.15
(1469 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultiv... 536 e-150
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 536 e-150
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 536 e-150
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 534 e-149
prf||1510387A retrotransposon del1-46 532 e-149
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul... 528 e-148
gb|AAP52375.1| putative retroelement [Oryza sativa (japonica cul... 527 e-148
gb|AAM01161.2| Putative retroelement [Oryza sativa (japonica cul... 527 e-148
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 527 e-148
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult... 526 e-147
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 525 e-147
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul... 525 e-147
ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cu... 525 e-147
gb|AAV31295.1| putative polyprotein [Oryza sativa (japonica cult... 525 e-147
gb|AAT85240.1| putative polyprotein [Oryza sativa (japonica cult... 525 e-147
ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultiv... 525 e-147
gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-... 523 e-146
gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cult... 523 e-146
ref|XP_469373.1| putative polyprotein [Oryza sativa (japonica cu... 522 e-146
gb|AAV43988.1| putative polyprotein [Oryza sativa (japonica cult... 521 e-146
>ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultivar-group)]
gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza
sativa (japonica cultivar-group)]
Length = 963
Score = 536 bits (1382), Expect = e-150
Identities = 319/784 (40%), Positives = 439/784 (55%), Gaps = 61/784 (7%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 188 TLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVSPPTFSSTTNPVE 246
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R E I F A
Sbjct: 247 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGG-EPITWQEFTTA 305
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + PT ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 306 FKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 363
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRS------------G 231
GL ++ ++ FQ LV+KA E NR + +S G
Sbjct: 364 GLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKSQQGSNQRPRLVTG 423
Query: 232 SQ--NFQNRGKFQNRRPYQR--PAGRGFASGSYRPMVGAAGGSGDQTQ-------NRELT 280
Q ++ G RP ++ G R +V + Q Q ++ +
Sbjct: 424 PQVPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRSVVARPAATPVQNQPVRKEQGSKPVI 483
Query: 281 CFKCGKPGHFARACPDTRPQCYNCNKLGHTAAQCRVPKAEPTVNTARGKRPAAKARVYTM 340
CF CG PGH+A CP R RV A N++ PA KARV +
Sbjct: 484 CFNCGDPGHYADKCPKPR----------------RVKNAPAPNNSSA---PAPKARVNHV 524
Query: 341 DGDDTEGVDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTP 400
+ + ++ G ++ +VLFDSGATHSF+S+ A + + +L L+V TP
Sbjct: 525 AAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGIEVISLGRPLLVNTP 584
Query: 401 AKTLLANTACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFP 460
+ + C ++ ++ ++L+ L K+LDVILGMDWLS + ++DC ++V
Sbjct: 585 GNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLT 644
Query: 461 DSVLSEYLFANHISVSLNGGS-QEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLP 519
+S N +VS S + + V+L+ + + IP+V+++ DVFP D+PG+P
Sbjct: 645 NS--------NGETVSFFASSPKSHGVVLNQVA-----LQEIPIVQDYPDVFPEDLPGMP 691
Query: 520 PVRDIEFAIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLV 579
P RDIEF ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V
Sbjct: 692 PKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFV 751
Query: 580 KKKDGKSRLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTE 639
+KKD R+CVDYR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ E
Sbjct: 752 EKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREE 811
Query: 640 DIQKTAFRTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNV 699
DI KTAF TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK
Sbjct: 812 DIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTK 871
Query: 700 VEHEGHLRQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWER 759
EHE HLR L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++
Sbjct: 872 EEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQ 931
Query: 760 PKTV 763
PKTV
Sbjct: 932 PKTV 935
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1447
Score = 536 bits (1381), Expect = e-150
Identities = 319/798 (39%), Positives = 440/798 (54%), Gaps = 47/798 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 20 TLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVRPPTFSSTTNPVE 78
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R + E I F A
Sbjct: 79 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITWQEFTAA 137
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 138 FKKTHIPAGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 195
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL ++ ++ FQ LV+KA E NR + MR +Q +G Q
Sbjct: 196 GLNDELSYALMSTDFWDFQQLVDKAIRQEDKYNRMEQK------MRRAAQFKAQQGSNQR 249
Query: 244 RRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFKCGKPGHFARACP 295
R P ++ G ++ G G+ +N R
Sbjct: 250 PRLVTGPQAPSYSQGGSSSVIRPQRQFYNNNTGNRGNDNRNMVARPAATSAQNQPVRREQ 309
Query: 296 DTRPQ-CYNCNKLGHTAAQCRVPKAEPTVNTARGKR-PAAKARVYTMDGDDTEGVDGLIR 353
++P C+NC GH A +C P+ PA KARV + + + ++
Sbjct: 310 GSKPVVCFNCGDPGHYADKCPKPRRVKNALAPNNSNVPAPKARVNHVAAAEAQNAPDVVL 369
Query: 354 GDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACMYC 413
G ++ +VLFDSGATHSF+S+ A + + +L L+V TP + + C
Sbjct: 370 GTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSA 429
Query: 414 SVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFANHI 473
++ + ++L+ L K+LDVILGMDWLS + ++DC ++V S
Sbjct: 430 TIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS----------- 478
Query: 474 SVSLNGGSQEYSVLLSLESKG----NPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAID 529
NG + + V S +S G + IP+V+++ DVFP D+PG+PP RDIEF ID
Sbjct: 479 ----NGETVSFFVF-SPKSHGVNLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRID 533
Query: 530 IVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLC 589
+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD R+C
Sbjct: 534 LVPGTNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMC 593
Query: 590 VDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTR 649
VDYR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TR
Sbjct: 594 VDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTR 653
Query: 650 YGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQV 709
YG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HLR
Sbjct: 654 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 713
Query: 710 LQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------ 763
L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV
Sbjct: 714 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSF 773
Query: 764 LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 774 LGLAGYYRRFIENFSKIA 791
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 536 bits (1380), Expect = e-150
Identities = 325/797 (40%), Positives = 442/797 (54%), Gaps = 45/797 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLRVRPPTFSSTTNPVE 82
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R + E I F A
Sbjct: 83 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITWQEFTAA 141
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + PT ++ +F L QG SV E+ LA + D + ++F+
Sbjct: 142 FKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLAHYAP--EDVRTDEERQEKFLE 199
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL ++ ++ FQ LV+KA E NR + R +Q +G Q
Sbjct: 200 GLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKK------RRAAQFKAQQGSNQR 253
Query: 244 RRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFKCGKPGHFARACP 295
R P + G +V G G+ +N R
Sbjct: 254 PRLITGPQDPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVARPAATPAQNQPVRKEQ 313
Query: 296 DTRPQ-CYNCNKLGHTAAQCRVP---KAEPTVNTARGKRPAAKARVYTMDGDDTEGVDGL 351
++P C+NC GH A +C P K P N + PA KARV + + + +
Sbjct: 314 GSKPGVCFNCGDPGHYADKCPKPRRVKNAPAPNNSNA--PAPKARVNHVAAAEAQNAPDV 371
Query: 352 IRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACM 411
+ G ++ SVLFDSGATHSF+S+ A + + +L L+V TP + + C
Sbjct: 372 VLGTFPVNSIPASVLFDSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGNQVFSTQYCP 431
Query: 412 YCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFAN 471
++ + ++L+ L K+LDVILGMDWLS + ++DC +V S N
Sbjct: 432 SATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANCKVTLTSS--------N 483
Query: 472 HISVSLNGGSQEY-SVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAIDI 530
+VS S +Y V+L+ + + IP+V+++ DVFP D+PG+PP RDIEF ID+
Sbjct: 484 GETVSFFVSSPKYHGVILNQVA-----LQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDL 538
Query: 531 VPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLCV 590
VPGT PI PYRMA EL E+K Q+EDLL KG+IRPS S WGAPV+ V+KKD R+CV
Sbjct: 539 VPGTNPIDKRPYRMAANELAEVKRQVEDLLQKGYIRPSTSLWGAPVIFVEKKDHTQRMCV 598
Query: 591 DYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTRY 650
DYR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TRY
Sbjct: 599 DYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRY 658
Query: 651 GHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQVL 710
G +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HLR L
Sbjct: 659 GLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLAL 718
Query: 711 QVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------L 764
+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV L
Sbjct: 719 EKLREHQLYAKSSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVTEIRSFL 778
Query: 765 GVSLVWRDIIVALSRIS 781
G++ +R I S+I+
Sbjct: 779 GLAGYYRRFIENFSKIA 795
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 534 bits (1375), Expect = e-149
Identities = 321/801 (40%), Positives = 442/801 (55%), Gaps = 53/801 (6%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVRPPTFSSTTNPVE 82
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R E I F A
Sbjct: 83 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGG-EPITWQEFTAA 141
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P+ ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 142 FKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 199
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL ++ ++ FQ LV+KA E NR + R +Q +G Q
Sbjct: 200 GLNDELSYALMATDFRDFQQLVDKAIRQEDKYNRIEQKK------RRAAQFKAQQGSNQR 253
Query: 244 RRPYQRPAGRGFASGSYRPMVGAAGGSGDQTQNRELTCFKCGKPGHFARACPDTRPQ--- 300
R P + G G++ + Q Q G ACP P
Sbjct: 254 PRLITGPQAPSYPQG------GSSSVARPQRQFYNNNTSNRGNDNRNMVACPAATPVQNQ 307
Query: 301 ------------CYNCNKLGHTAAQCRVPKAEPTVNTARGKR-PAAKARVYTMDGDDTEG 347
C+NC GH A +C P+ PA KARV + + +
Sbjct: 308 PVRKEQGSKPVICFNCGDPGHYADKCPKPRRVKNAPVPNNPNVPAPKARVNHVAAAEAQN 367
Query: 348 VDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLAN 407
++ G ++ +VLFDSGATHSF+S+ A + + + +L L+V TP + +
Sbjct: 368 APDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFST 427
Query: 408 TACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEY 467
C ++ + ++L+ L K+LDVILGMDWLS + ++DC ++V +S
Sbjct: 428 QYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS----- 482
Query: 468 LFANHISVSLNGGS-QEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEF 526
N +VS S + + V+L+ + + IP+V+++ DVFP D+PG+PP RDIEF
Sbjct: 483 ---NGETVSFFASSPKSHGVVLNQVA-----LQEIPIVQDYPDVFPEDLPGMPPKRDIEF 534
Query: 527 AIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKS 586
ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD
Sbjct: 535 RIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQ 594
Query: 587 RLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAF 646
R+CVDYR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL SGYHQ+R++ EDI KTAF
Sbjct: 595 RMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLHSGYHQLRIREEDIPKTAF 654
Query: 647 RTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHL 706
TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HL
Sbjct: 655 TTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHL 714
Query: 707 RQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV--- 763
R L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV
Sbjct: 715 RLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEI 774
Query: 764 ---LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 775 RSFLGLAGYYRRFIENFSKIA 795
>prf||1510387A retrotransposon del1-46
Length = 1443
Score = 532 bits (1370), Expect = e-149
Identities = 322/800 (40%), Positives = 454/800 (56%), Gaps = 66/800 (8%)
Query: 1 EMMATMAQAVTVQANDSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTD 60
+++A + + +A+ AE++ Q + R + + KGLN PP F G D
Sbjct: 21 QLLAVLQNMTNILHQQAAISHQAEQSARQGE-SRPRLIKEFKGLN------PPIFKGDPD 73
Query: 61 PDKADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSF 120
P +A WI+ + KI L + K+ +A++ L G+AE+WW ED+ +I + F
Sbjct: 74 PLEAHRWIRHVTKILDTLGVTDEQKVILASFQLQGEAEFWWDAKVRSREDDTTQIKWDEF 133
Query: 121 RMAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKR 180
F EK+FP + RD+ E +F+TL QG ++V ++ +K E L+++ + D +N R + KR
Sbjct: 134 VEVFTEKFFPDTVRDDLE-RFMTLVQGSLTVAQYEAKFEELSRYAPYQVD-INIRKV-KR 190
Query: 181 FVNGLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGK 240
F GL+ I + I ++ ++ +A VE + R ++ +NRG
Sbjct: 191 FEQGLKLSITKQLSSHLIKDYREVITRALSVEKREQREAQIMA--------KRSKKNRG- 241
Query: 241 FQNRRPYQRPAGRGFASGSYRPMVGAAGGSGDQTQNRELTCFKCGKPGHFAR------AC 294
+ PY R ++ + + G C+ G+PGHF A
Sbjct: 242 --HNHPYTRKEPHRQSNDKSQCPNPLSPGK---------VCYSYGQPGHFKSNYLTLMAP 290
Query: 295 PDTRPQCYNCNKLGHTAAQCRVPKAEPTVNTARGKRPAAKARVYTMDGDDTEGVDG-LIR 353
P P Y R P+ +P +G+ P RV + D GV G +IR
Sbjct: 291 PQQHPPPY------------RPPQNQPRPPQHQGEGPRV-TRVNALIAQDP-GVSGTMIR 336
Query: 354 GDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKT-LLANTACMY 412
I +L VL D+G+THSFI+ L +P+ L + L V +P T N C
Sbjct: 337 SILSIFSSLCHVLIDTGSTHSFITPRIIKMLEIPVQPLGYILSVISPIGTSTFVNQVCKG 396
Query: 413 CSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLF--- 469
C +T N+ +L+ L L++ D++LGMDWL+ YH +LDC K+V F + E+ F
Sbjct: 397 CMITIGNQELTVDLIILDLEDPDILLGMDWLAAYHVVLDCFSKKVTFHLPGIPEFHFHGE 456
Query: 470 ANHISVSLNGGSQEYSVLLSLESKGN--PEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFA 527
H S L SL S+ N P D +V+E+ +VFP D+PGLPP R+IEF
Sbjct: 457 TQHTFFPTFTHQPNLSYLASLASEINITPSTDLSLIVREYINVFPDDLPGLPPPREIEFQ 516
Query: 528 IDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSR 587
I+++PGT PISI PY MAP+EL ELK QLEDLL+KGFIR S SPWGA VL KKD R
Sbjct: 517 INLLPGTSPISITPYHMAPSELQELKEQLEDLLNKGFIRGSTSPWGAHVLFDPKKDDSKR 576
Query: 588 LCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFR 647
+C+DY+ LN VTVKN+YPLPRIDDL DQL GA FSKIDL+ YHQ+R++ DI KTAFR
Sbjct: 577 MCIDYK-LNSVTVKNKYPLPRIDDLFDQLNGA-YFSKIDLRFRYHQLRIRA-DIPKTAFR 633
Query: 648 TRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLR 707
TRYGHYE+LVMPFG+TN P FM+ MNR F +LD+F+VVF+D +LIYS+ +HE HLR
Sbjct: 634 TRYGHYEFLVMPFGLTNVPTAFMNLMNRVFREYLDKFIVVFVDYVLIYSRTQKDHEHHLR 693
Query: 708 QVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV---- 763
LQ+LR +LYA SKCEFW+E+VKFLGHV+S+EGI VDP KV+ V++WE PK +
Sbjct: 694 ISLQLLRNNQLYAKLSKCEFWMEKVKFLGHVVSREGIVVDPVKVKAVMNWELPKNIFEIR 753
Query: 764 --LGVSLVWRDIIVALSRIS 781
LG++ +R I S+++
Sbjct: 754 SFLGLAGYYRRFIKGFSKLA 773
>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531578|ref|NP_920091.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1461
Score = 528 bits (1359), Expect = e-148
Identities = 322/787 (40%), Positives = 439/787 (54%), Gaps = 45/787 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLRVRPPTFSSTTNPVE 82
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R E I F A
Sbjct: 83 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGG-EPITWQEFTAA 141
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P+ ++ +F L QG SV ++ LA + D + ++F+
Sbjct: 142 FKKTHIPSGVVALKKREFRALNQGSRSVTKYLHDFNRLACYAP--EDVCTDEERQEKFLE 199
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL ++ ++ FQ LV+KA E N + R TG + S Q +
Sbjct: 200 GLNDELSYALMSTDFRDFQQLVDKAIRQE--DNNQRPRLVTGPQVPSYPQGGSSSVVRPQ 257
Query: 244 RRPYQRPAGRGFASGSYRPMVGAAGGSGDQTQNRELTCFKCGKPGHFARACPDTRPQCYN 303
R+ Y G R +V A + QN+ + + KP C+N
Sbjct: 258 RQFYNNNTGN--RGNDNRNVV--ARPAATPVQNQPVRREQGSKP-----------VICFN 302
Query: 304 CNKLGHTAAQCRVP---KAEPTVNTARGKRPAAKARVYTMDGDDTEGVDGLIRGDCEIDG 360
C GH A +C P K P N PA KARV + + + ++ G ++
Sbjct: 303 CGDPGHYADKCPKPRRVKNAPAPNNFNV--PAPKARVNHVAAAEAQNAPDVVLGTFPVNS 360
Query: 361 NLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACMYCSVTYNNR 420
+VLFDSGATHSF+S+ AI+ + + +L L+V TP + C ++
Sbjct: 361 IPATVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIEIEEV 420
Query: 421 VYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFANHISVSLNGG 480
+ ++L+ L K+LDVILGMDWLS + ++DC ++V S N +VS
Sbjct: 421 PFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS--------NGETVSFFAS 472
Query: 481 SQEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAIDIVPGTGPISIA 540
S + E + IP+V+++ DVFP D+PG+PP RDIEF ID+VPGT PI
Sbjct: 473 SPKSHG----EVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKR 528
Query: 541 PYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKVTV 600
PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD R+CVDYR LN+VT+
Sbjct: 529 PYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTI 588
Query: 601 KNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTRYGHYEYLVMPF 660
KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TRYG +E VM F
Sbjct: 589 KNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLFECTVMSF 648
Query: 661 GVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQVLQVLREKELYA 720
G+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HLR L+ LRE +LYA
Sbjct: 649 GLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYA 708
Query: 721 NPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------LGVSLVWRDII 774
SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV LG++ +R I
Sbjct: 709 KFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLGLAGYYRRFI 768
Query: 775 VALSRIS 781
S+I+
Sbjct: 769 ENFSKIA 775
>gb|AAP52375.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531572|ref|NP_920088.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1466
Score = 527 bits (1358), Expect = e-148
Identities = 319/796 (40%), Positives = 437/796 (54%), Gaps = 43/796 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLRVRPPTFSSTTNPVE 82
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R E I F A
Sbjct: 83 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGG-EPITWQEFTAA 141
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P+ ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 142 FKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 199
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL + ++ FQ LV+KA E NR + R +Q +G Q
Sbjct: 200 GLNDKLSYALMSTDFQDFQQLVDKAIRQEDKYNRMEQKK------RRAAQFKAQQGSNQR 253
Query: 244 RRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFKCGKPGHFARACP 295
R P + G +V G G+ +N R
Sbjct: 254 PRLVTGPQVPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQPVRREQ 313
Query: 296 DTRPQ-CYNCNKLGHTAAQCRVP---KAEPTVNTARGKRPAAKARVYTMDGDDTEGVDGL 351
++P C+NC GH A +C P K P N PA KARV + + + +
Sbjct: 314 GSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNFNV--PAPKARVNHVAAAEAQNAPDV 371
Query: 352 IRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACM 411
+ G ++ +VLFDSGATHSF+ + AI+ + + +L L+V TP + C
Sbjct: 372 VLGTFPVNSIPATVLFDSGATHSFLCKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCP 431
Query: 412 YCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFAN 471
++ + ++L+ L K+LDVILGMDWLS + ++DC ++V S N
Sbjct: 432 SVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS--------N 483
Query: 472 HISVSLNGGSQEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAIDIV 531
+VS S + E + IP+V+++ DVFP D+PG+PP RDIEF ID+V
Sbjct: 484 GETVSFFASSPKSHG----EVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLV 539
Query: 532 PGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLCVD 591
PGT PI PYRMA EL E+K Q++DL+ KG+IRPS SPWGAPV+ V+KKD R+CVD
Sbjct: 540 PGTNPIHKRPYRMAANELAEVKKQVDDLIQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVD 599
Query: 592 YRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTRYG 651
YR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TRYG
Sbjct: 600 YRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 659
Query: 652 HYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQVLQ 711
+E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HLR L+
Sbjct: 660 LFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALE 719
Query: 712 VLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------LG 765
LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV LG
Sbjct: 720 KLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLG 779
Query: 766 VSLVWRDIIVALSRIS 781
++ +R + S+I+
Sbjct: 780 LAGYYRRFVENFSKIA 795
>gb|AAM01161.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1661
Score = 527 bits (1358), Expect = e-148
Identities = 319/796 (40%), Positives = 437/796 (54%), Gaps = 43/796 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 336 TLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLRVRPPTFSSTTNPVE 394
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R E I F A
Sbjct: 395 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGG-EPITWQEFTAA 453
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P+ ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 454 FKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 511
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL + ++ FQ LV+KA E NR + R +Q +G Q
Sbjct: 512 GLNDKLSYALMSTDFQDFQQLVDKAIRQEDKYNRMEQKK------RRAAQFKAQQGSNQR 565
Query: 244 RRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFKCGKPGHFARACP 295
R P + G +V G G+ +N R
Sbjct: 566 PRLVTGPQVPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQPVRREQ 625
Query: 296 DTRPQ-CYNCNKLGHTAAQCRVP---KAEPTVNTARGKRPAAKARVYTMDGDDTEGVDGL 351
++P C+NC GH A +C P K P N PA KARV + + + +
Sbjct: 626 GSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNFNV--PAPKARVNHVAAAEAQNAPDV 683
Query: 352 IRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACM 411
+ G ++ +VLFDSGATHSF+ + AI+ + + +L L+V TP + C
Sbjct: 684 VLGTFPVNSIPATVLFDSGATHSFLCKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCP 743
Query: 412 YCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFAN 471
++ + ++L+ L K+LDVILGMDWLS + ++DC ++V S N
Sbjct: 744 SVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS--------N 795
Query: 472 HISVSLNGGSQEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAIDIV 531
+VS S + E + IP+V+++ DVFP D+PG+PP RDIEF ID+V
Sbjct: 796 GETVSFFASSPKSHG----EVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLV 851
Query: 532 PGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLCVD 591
PGT PI PYRMA EL E+K Q++DL+ KG+IRPS SPWGAPV+ V+KKD R+CVD
Sbjct: 852 PGTNPIHKRPYRMAANELAEVKKQVDDLIQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVD 911
Query: 592 YRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTRYG 651
YR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TRYG
Sbjct: 912 YRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG 971
Query: 652 HYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQVLQ 711
+E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HLR L+
Sbjct: 972 LFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALE 1031
Query: 712 VLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------LG 765
LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV LG
Sbjct: 1032 KLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLG 1091
Query: 766 VSLVWRDIIVALSRIS 781
++ +R + S+I+
Sbjct: 1092 LAGYYRRFVENFSKIA 1107
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 527 bits (1358), Expect = e-148
Identities = 320/797 (40%), Positives = 443/797 (55%), Gaps = 45/797 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF R PP FS T+P +
Sbjct: 284 TLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVRPPTFSSTTNPVE 342
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R + E I F A
Sbjct: 343 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITWQEFTAA 401
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P+ ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 402 FRKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 459
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL ++ ++ FQ LV+KA E NR + R +Q +G Q
Sbjct: 460 GLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKK------RRAAQFKAQQGSNQR 513
Query: 244 RRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFKCGKPGHFARACP 295
R P + G +V G+ +N R
Sbjct: 514 PRLVTGPQVPSYPQGGSSSVVRPQRQFYNNNTSNRGNDNRNVVARPAATSAQNQPVRKEQ 573
Query: 296 DTRPQ-CYNCNKLGHTAAQCRVP---KAEPTVNTARGKRPAAKARVYTMDGDDTEGVDGL 351
++P C+NC GH A +C P K P N + PA KARV + + + +
Sbjct: 574 GSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNSNV--PAPKARVNHVAAAEAQNAPDV 631
Query: 352 IRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACM 411
+ G ++ +VLFDSGATHSF+S+ + + +L L+V TP + + C
Sbjct: 632 VLGTFPVNSIPATVLFDSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGNQVFSTQYCP 691
Query: 412 YCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFAN 471
++ + ++L+ L K+LDVILGMDWLS + ++DC ++V S N
Sbjct: 692 SATIEIEEVPFPSSLILLESKDLDVILGMDWLSCHRGVIDCANRKVTLTSS--------N 743
Query: 472 HISVSLNGGS-QEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAIDI 530
+VS S + + V+L+ + + IP+V+++ DVFP D+PG+PP R+IEF ID+
Sbjct: 744 GETVSFFMSSPKSHGVILNQVA-----LQEIPIVQDYPDVFPEDLPGMPPKREIEFRIDL 798
Query: 531 VPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLCV 590
VPGT PI PYRMA ELVE+K Q+EDLL KG+IRPS SPWGAPV+ V+KKD R+CV
Sbjct: 799 VPGTNPIHKRPYRMAANELVEVKRQVEDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCV 858
Query: 591 DYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTRY 650
DYR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TRY
Sbjct: 859 DYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRY 918
Query: 651 GHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQVL 710
G +E VM FG+TNAPA FM+ MN+ F +LD+ VVVFIDDILIYSK EHE HLR L
Sbjct: 919 GLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKLVVVFIDDILIYSKTKEEHEEHLRLAL 978
Query: 711 QVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------L 764
+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV L
Sbjct: 979 EKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFL 1038
Query: 765 GVSLVWRDIIVALSRIS 781
G++ +R I S+I+
Sbjct: 1039 GLAGYYRRFIENFSKIA 1055
>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1715
Score = 526 bits (1354), Expect = e-147
Identities = 327/802 (40%), Positives = 449/802 (55%), Gaps = 63/802 (7%)
Query: 5 TMAQAVTVQANDSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDKA 64
T+AQ + Q M ++ + Q + QNK L +F R PP FS T+P +A
Sbjct: 266 TLAQVLAQQTQ--LMNMMMQQFQNQQNQGNNHVPPQNK-LAEFLRVRPPVFSSTTNPVEA 322
Query: 65 DLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMAF 124
W+ IEK +LQ + K+ A++ L G A WW R + E I F AF
Sbjct: 323 SDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAF 381
Query: 125 LEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNG 184
+ + P+ ++ +F +L QG SV E+ + LA++ D N+ ++F+ G
Sbjct: 382 RKTHIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLARYAP--EDVRNDEERQEKFLGG 439
Query: 185 LRPDIEDSVRPLGIMRFQSLVEKATEVELMKNR-----------RLNRAGTGGP-MRSGS 232
L ++ + FQ LV+KA E NR + + P + G
Sbjct: 440 LNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKPRLTLGP 499
Query: 233 QNFQNRGKFQNRRP----YQRPAGRGFASGSYRPMVGAAGGSGDQTQ--NRELTCFKCGK 286
Q G RP + AG + + RP+ A + + N+ + CF CG
Sbjct: 500 QPMPQGGSSSVVRPQRQFFNNNAGNNIRNLAPRPVAVPAQQQPAKREQGNKPVVCFNCGD 559
Query: 287 PGHFARACPDTRPQCYNCNKLGHTAAQCRVPKAEPTVNTARGKRPAAKARVYTMDGDDTE 346
PGH+A CP R RV K P N + P +KARV + + +
Sbjct: 560 PGHYADKCPKPR----------------RV-KVVPAQNNS--AVPTSKARVNHVAAAEAQ 600
Query: 347 GVDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLA 406
+I G ++ +VLFDSGATHSF+S A + + L L+V+TP+ L+
Sbjct: 601 DAPDVILGMFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALS 660
Query: 407 NTACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSE 466
+ + ANL+ L K+LDVILGMDWL+ + ++DC ++V L+
Sbjct: 661 LQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKV-----TLNS 715
Query: 467 YLFANHISVSLNGGSQEYSVLLSLESKGNP-EVDSIPVVKEFTDVFPGDVPGLPPVRDIE 525
Y + V+++ S E SL S+ N ++ IP+V+E+ DVFP D+PG+PP RDIE
Sbjct: 716 Y---DGRVVTVHALSSE-----SLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIE 767
Query: 526 FAIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGK 585
F ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD
Sbjct: 768 FRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHT 827
Query: 586 SRLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTA 645
R+CVDYR LN VT+KN+YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R+K EDI KTA
Sbjct: 828 QRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTA 887
Query: 646 FRTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGH 705
F TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYS+ EHE H
Sbjct: 888 FTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEH 947
Query: 706 LRQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV-- 763
LR L+ LRE +LYA SKCEFWL EVKFLGH+IS G+AVDP+ VE+V +W++PKTV
Sbjct: 948 LRLALEKLREHQLYAKFSKCEFWLSEVKFLGHIISAGGVAVDPSNVESVTNWKQPKTVSE 1007
Query: 764 ----LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 1008 IRSFLGLAGYYRRFIENFSKIA 1029
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 525 bits (1353), Expect = e-147
Identities = 324/784 (41%), Positives = 441/784 (55%), Gaps = 57/784 (7%)
Query: 5 TMAQAVTVQANDSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDKA 64
T+AQ + Q M ++ + Q + QNK L +F R PP FS T+P +A
Sbjct: 24 TLAQVLAQQTQ--LMNMMMQQLQNQQNQGNNYAPPQNK-LAEFLRVRPPIFSSTTNPVEA 80
Query: 65 DLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMAF 124
W+ IEK +LQ + K+ A++ L G A WW R + E I F AF
Sbjct: 81 GDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRITAEPITWLEFTAAF 139
Query: 125 LEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNG 184
+ + P+ ++ +F +L QG SV E+ + LA++ D N+ ++F+ G
Sbjct: 140 RKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRNDEERQEKFLEG 197
Query: 185 LRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQNR 244
L ++ + FQ LV+KA E NR + + +Q N+
Sbjct: 198 LNDELSYPLMTGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAHFK--AQQGSNQKPRLTL 255
Query: 245 RPYQRPAGRGFASGSYRPMVGAAGGSGDQTQNRELTCFKCGKPGHFARACPDTRPQCYNC 304
P P G A +P G ++ + CF CG PGH+A CP R
Sbjct: 256 GPQSVPHG---APTQQQPAKREQG-------SKPVVCFNCGDPGHYADKCPKPR------ 299
Query: 305 NKLGHTAAQCRVPKAEPTVNTARGKRPAAKARVYTMDGDDTEGVDGLIRGDCEIDGNLLS 364
RV K P N + PA+KARV + + + +I G ++ +
Sbjct: 300 ----------RV-KVVPAQNNS--TVPASKARVNHVAAAEAQDAPDVILGTFPVNSVPAT 346
Query: 365 VLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACMYCSVTYNNRVYHA 424
VLFDSGATHSF+S A + + L L+V+TP+ L+ + + A
Sbjct: 347 VLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIEIKGVPFLA 406
Query: 425 NLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFANHISVSLNGGSQEY 484
NL+ L K+LDVILGMDWL+ + ++DC ++V + + V+++ S E
Sbjct: 407 NLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN--------DGRVVTVHALSSE- 457
Query: 485 SVLLSLESKGNP-EVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAIDIVPGTGPISIAPYR 543
SL SK N ++ IP+V+E+ DVFP D+PG+PP RDIEF ID+VPGT PI PYR
Sbjct: 458 ----SLRSKLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYR 513
Query: 544 MAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKVTVKNR 603
MA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD R+CVDYR LN VT+KN+
Sbjct: 514 MAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNK 573
Query: 604 YPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTRYGHYEYLVMPFGVT 663
YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R+K EDI KTAF TRYG +E VM FG+T
Sbjct: 574 YPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLT 633
Query: 664 NAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQVLQVLREKELYANPS 723
NAPA FM+ MN+ F +LD+FVVVFIDDILIYS+ EHE HLR L+ LRE +LYA S
Sbjct: 634 NAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFS 693
Query: 724 KCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------LGVSLVWRDIIVAL 777
KCEFWL EVKFLGHVIS G+AVDP+ VE+V +W++PKTV LG++ +R I
Sbjct: 694 KCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENF 753
Query: 778 SRIS 781
S+I+
Sbjct: 754 SKIA 757
>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531590|ref|NP_920097.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 525 bits (1353), Expect = e-147
Identities = 306/747 (40%), Positives = 424/747 (55%), Gaps = 39/747 (5%)
Query: 52 PPKFSGGTDPDKADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDN 111
PP FS T+P +A W+ +EK ++Q E K+ A++ L G A WW R
Sbjct: 39 PPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGG 98
Query: 112 HEEIN*NSFRMAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDH 171
E I F AF + + PT ++ +F L QG SV E+ LA++ D
Sbjct: 99 -EPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDV 155
Query: 172 VNERYMCKRFVNGLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSG 231
+ ++F+ GL ++ ++ FQ LV+KA E NR + R
Sbjct: 156 HTDEERQEKFLEGLNDELSYTLMSTEFRDFQQLVDKAIRQEDKYNRMEQKK------RRA 209
Query: 232 SQNFQNRGKFQNRRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFK 283
+Q +G Q R P + G +V G G++ +N
Sbjct: 210 AQFKAQQGSNQRPRLIPGPQVPSYPQGGSSSVVRPQRQFYNNNTGNRGNENRNVVARPAA 269
Query: 284 CGKPGHFARACPDTRPQ-CYNCNKLGHTAAQCRVPKAEPTVNTARGKR-PAAKARVYTMD 341
R ++P C+NC GH A +C P+ V PA KARV +
Sbjct: 270 TPVQNQPVRKEQGSKPVICFNCGDPGHYADKCPKPRHVKNVPVPNNSNVPAPKARVNHVA 329
Query: 342 GDDTEGVDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPA 401
+ + ++ G ++ +VLFDSGATHSF+S+ A + + + +L L+V TP
Sbjct: 330 AAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPG 389
Query: 402 KTLLANTACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPD 461
+ + C ++ + ++L+ L K+LDVILGMDWLS + ++DC ++V +
Sbjct: 390 NQVFSTRYCPSVTIEIEGVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTN 449
Query: 462 SVLSEYLFANHISVSLNGGS-QEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPP 520
S N +VS S + + V+L+ + + IP+V+++ DVFP D+PG+PP
Sbjct: 450 S--------NGETVSFFASSPKSHGVVLNQVA-----LQEIPIVQDYPDVFPEDLPGMPP 496
Query: 521 VRDIEFAIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVK 580
RDIEF ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+
Sbjct: 497 KRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVE 556
Query: 581 KKDGKSRLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTED 640
KKD R+CVDYR LN+VT+KN+YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R++ ED
Sbjct: 557 KKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREED 616
Query: 641 IQKTAFRTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVV 700
I KTAF TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYSK
Sbjct: 617 IPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKE 676
Query: 701 EHEGHLRQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERP 760
EH+ HLR L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++P
Sbjct: 677 EHKEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQP 736
Query: 761 KTV------LGVSLVWRDIIVALSRIS 781
KTV LG++ +R I S+I+
Sbjct: 737 KTVSEVRSFLGLAGYYRRFIENFSKIA 763
>ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 525 bits (1353), Expect = e-147
Identities = 329/803 (40%), Positives = 452/803 (55%), Gaps = 65/803 (8%)
Query: 5 TMAQAVTVQANDSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDKA 64
T+AQ + Q M ++ + Q + QNK L +F R PP FS T+P +A
Sbjct: 26 TLAQVLAQQTQ--LMHMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEA 82
Query: 65 DLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMAF 124
W+ IEK +LQ + K+ A++ L G A WW R + E I F AF
Sbjct: 83 SDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAF 141
Query: 125 LEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNG 184
+ + P+ ++ +F +L QG SV E+ + LA++ D N+ ++F+ G
Sbjct: 142 RKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRNDEERQEKFLGG 199
Query: 185 LRPDIEDSVRPLGIMRFQSLVEKATEVE------LMKNRRLNRAGTG-----------GP 227
L ++ + FQ LV+KA E K RR+ + T GP
Sbjct: 200 LNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKPRLTLGP 259
Query: 228 MRSGSQNFQNRGKFQNRRPYQRPAGRGFASGSYRPMVGAAGGSGDQTQ--NRELTCFKCG 285
+S Q + R+ + AG + + RP+ A + + N+ + CF CG
Sbjct: 260 -QSMPQGCSSSVVRPQRQFFNNNAGNNIRNQAPRPVAVPAQQQPAKREQGNKPVVCFNCG 318
Query: 286 KPGHFARACPDTRPQCYNCNKLGHTAAQCRVPKAEPTVNTARGKRPAAKARVYTMDGDDT 345
PGH+A CP R RV K P N + PA+KARV + +
Sbjct: 319 DPGHYADKCPKPR----------------RV-KVVPAQNNS--AVPASKARVNHVAAAEA 359
Query: 346 EGVDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLL 405
+ +I G ++ +VLFDSGATHSF+S A + + L L+V+TP+ L
Sbjct: 360 QDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQAL 419
Query: 406 ANTACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLS 465
+ + + ANL+ L K+LDVILGMDWL+ + ++DC ++V L+
Sbjct: 420 SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKV-----TLN 474
Query: 466 EYLFANHISVSLNGGSQEYSVLLSLESKGNP-EVDSIPVVKEFTDVFPGDVPGLPPVRDI 524
Y + V+++ S E SL S+ N ++ IP+V+E+ DVFP D+PG+PP RDI
Sbjct: 475 SY---DGRVVTVHALSSE-----SLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDI 526
Query: 525 EFAIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDG 584
EF ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD
Sbjct: 527 EFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDH 586
Query: 585 KSRLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKT 644
R+CVDYR LN VT+KN+YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R+K EDI KT
Sbjct: 587 TQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKT 646
Query: 645 AFRTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEG 704
AF TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYS+ EHE
Sbjct: 647 AFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEE 706
Query: 705 HLRQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV- 763
HLR L+ LRE +LYA SKCEFWL EVK LGHVIS G+AVDP+ VE+V +W++PKTV
Sbjct: 707 HLRLALEKLREHQLYAKFSKCEFWLSEVKLLGHVISAGGVAVDPSNVESVTNWKQPKTVS 766
Query: 764 -----LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 767 EIRSFLGLAGYYRRFIENFSKIA 789
>gb|AAV31295.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1374
Score = 525 bits (1353), Expect = e-147
Identities = 317/798 (39%), Positives = 437/798 (54%), Gaps = 47/798 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF PP FS T+P +
Sbjct: 28 TLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLHVRPPTFSSTTNPVE 86
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R + E I F A
Sbjct: 87 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITWQEFTAA 145
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P+ ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 146 FKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 203
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL ++ ++ FQ LV+KA E NR + R +Q +G Q
Sbjct: 204 GLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKK------RRAAQFKAQQGSNQR 257
Query: 244 RRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFKCGKPGHFARACP 295
R P + G +V G G+ +N + R
Sbjct: 258 PRLVTGPQAPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVVHPAATSAQNQPVRKEQ 317
Query: 296 DTRP-QCYNCNKLGHTAAQCRVPKAEPTVNTARGKR-PAAKARVYTMDGDDTEGVDGLIR 353
++ C+NC LGH A +C P+ V PA KARV + + + ++
Sbjct: 318 GSKTVTCFNCGDLGHYADKCPKPRRVKNVPAPNNSNVPAPKARVNHVAAAEAQNAPDVVL 377
Query: 354 GDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACMYC 413
G ++ +VLFDSGATHSF+S+ A + + +L L+V TP + C
Sbjct: 378 GTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYCPSA 437
Query: 414 SVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFANHI 473
++ + ++L+ L K+LDVILGMDWLS + ++DC ++V S
Sbjct: 438 TIGIEEDPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS----------- 486
Query: 474 SVSLNGGSQEYSVLLSLESKG----NPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAID 529
NG + + V S +S G + IP+V++++DVFP D+PG+PP DIEF ID
Sbjct: 487 ----NGETVSFFVS-SPKSHGVTINQVALQDIPIVRDYSDVFPEDLPGMPPKIDIEFRID 541
Query: 530 IVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLC 589
+VPGT PI PYRMA EL E+K Q+EDLL KG+IRPS SPWGAPV+ V+KKD R+C
Sbjct: 542 LVPGTNPIHKRPYRMAANELAEVKRQVEDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMC 601
Query: 590 VDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTR 649
VDYR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TR
Sbjct: 602 VDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTR 661
Query: 650 YGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQV 709
YG +E M FG+TNA A FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HLR
Sbjct: 662 YGLFECTDMSFGLTNASAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 721
Query: 710 LQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------ 763
L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV
Sbjct: 722 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSF 781
Query: 764 LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 782 LGLAGYYRRFIENFSKIA 799
>gb|AAT85240.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1472
Score = 525 bits (1353), Expect = e-147
Identities = 317/798 (39%), Positives = 437/798 (54%), Gaps = 47/798 (5%)
Query: 5 TMAQAVTVQAN-DSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDK 63
T+AQ + Q + + + A+ + +Q Q QNK L DF PP FS T+P +
Sbjct: 28 TLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLHVRPPTFSSTTNPVE 86
Query: 64 ADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMA 123
A W+ +EK ++Q E K+ A++ L G A WW R + E I F A
Sbjct: 87 AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITWQEFTAA 145
Query: 124 FLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVN 183
F + + P+ ++ +F L QG SV E+ LA++ D + ++F+
Sbjct: 146 FKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEERQEKFLE 203
Query: 184 GLRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQN 243
GL ++ ++ FQ LV+KA E NR + R +Q +G Q
Sbjct: 204 GLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKK------RRAAQFKAQQGSNQR 257
Query: 244 RRPYQRPAGRGFASGSYRPMV--------GAAGGSGDQTQNRELTCFKCGKPGHFARACP 295
R P + G +V G G+ +N + R
Sbjct: 258 PRLVTGPQAPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVVHPAATSAQNQPVRKEQ 317
Query: 296 DTRP-QCYNCNKLGHTAAQCRVPKAEPTVNTARGKR-PAAKARVYTMDGDDTEGVDGLIR 353
++ C+NC LGH A +C P+ V PA KARV + + + ++
Sbjct: 318 GSKTVTCFNCGDLGHYADKCPKPRRVKNVPAPNNSNVPAPKARVNHVAAAEAQNAPDVVL 377
Query: 354 GDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACMYC 413
G ++ +VLFDSGATHSF+S+ A + + +L L+V TP + C
Sbjct: 378 GTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYCPSA 437
Query: 414 SVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFANHI 473
++ + ++L+ L K+LDVILGMDWLS + ++DC ++V S
Sbjct: 438 TIGIEEDPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSS----------- 486
Query: 474 SVSLNGGSQEYSVLLSLESKG----NPEVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAID 529
NG + + V S +S G + IP+V++++DVFP D+PG+PP DIEF ID
Sbjct: 487 ----NGETVSFFVS-SPKSHGVTINQVALQDIPIVRDYSDVFPEDLPGMPPKIDIEFRID 541
Query: 530 IVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLC 589
+VPGT PI PYRMA EL E+K Q+EDLL KG+IRPS SPWGAPV+ V+KKD R+C
Sbjct: 542 LVPGTNPIHKRPYRMAANELAEVKRQVEDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMC 601
Query: 590 VDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTR 649
VDYR LN+VT+KN+YPLPRIDDL DQL GA +FSKIDL+SGYHQ+R++ EDI KTAF TR
Sbjct: 602 VDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTR 661
Query: 650 YGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQV 709
YG +E M FG+TNA A FM+ MN+ F +LD+FVVVFIDDILIYSK EHE HLR
Sbjct: 662 YGLFECTDMSFGLTNASAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 721
Query: 710 LQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------ 763
L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+VLSW++PKTV
Sbjct: 722 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSF 781
Query: 764 LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 782 LGLAGYYRRFIENFSKIA 799
>ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultivar-group)]
gi|38347555|emb|CAD39386.2| OSJNBb0016B03.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1374
Score = 525 bits (1351), Expect = e-147
Identities = 322/801 (40%), Positives = 450/801 (55%), Gaps = 74/801 (9%)
Query: 15 NDSAMRRAAEEAREQHQRQREVTLDQNKGLN---------DFRRHDPPKFSGGTDPDKAD 65
N + + A++ + H +++ QN+G N +F R PP FS T+P +A
Sbjct: 24 NPTLAQVLAQQTQLMHMMMQQLQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEAG 83
Query: 66 LWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMAFL 125
W+ IEK +LQ + K+ A++ L G A WW R + N E I F AF
Sbjct: 84 DWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRINAEPITWLEFTAAFR 142
Query: 126 EKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNGL 185
+ + P+ ++ +F +L QG SV E+ + LA++ D N+ ++F+ GL
Sbjct: 143 KTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRNDEERQEKFLGGL 200
Query: 186 RPDIEDSVRPLGIMRFQSLVEKATEVE------LMKNRRLN--RAGTGGPMRS----GSQ 233
++ + FQ LV+KA E K RR+ +A G + G Q
Sbjct: 201 NDELSYPLMVGDYPDFQKLVDKAIRQEDKYNFMEQKKRRIAHFKAQQGSNQKPRLTLGPQ 260
Query: 234 NFQNRGKFQNRRP----YQRPAGRGFASGSYRPMVGAAGGSGDQTQ--NRELTCFKCGKP 287
+ + G RP + AG + + RP+V + + ++ + CF CG P
Sbjct: 261 SMPHGGSSSAVRPQRQFFNNNAGNNIRNQAPRPVVAPTQQQPAKREQGSKPVVCFNCGDP 320
Query: 288 GHFARACPDTRPQCYNCNKLGHTAAQCRVPKAEPTVNTARGKRPAAKARVYTMDGDDTEG 347
GH+A CP R RV N+A P +KARV + + +
Sbjct: 321 GHYADKCPKPR----------------RVKVVPVQSNSA---VPVSKARVNHVAAAEAQD 361
Query: 348 VDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLAN 407
+I G ++ +VLFDSGATHSF+ + + + L L+V+TP+ L+
Sbjct: 362 APDVILGTFPVNSVPATVLFDSGATHSFL-----LNHGMEVEDLRRPLMVSTPSNQALSL 416
Query: 408 TACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEY 467
+ + ANL+ L K+LDVILGMDWL+ + ++DC ++V
Sbjct: 417 QRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTL-------- 468
Query: 468 LFANHISVSLNGGSQEYSVLLSLESKGNP-EVDSIPVVKEFTDVFPGDVPGLPPVRDIEF 526
+ + V+++ S E SL S+ N ++ IP+V+E+ DVFP D+PG+PP RDIEF
Sbjct: 469 ISKDGRVVTVHAMSSE-----SLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEF 523
Query: 527 AIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKS 586
ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD
Sbjct: 524 RIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQ 583
Query: 587 RLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAF 646
R+CVDYR LN VT+KN+YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R+K EDI KTAF
Sbjct: 584 RMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAF 643
Query: 647 RTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHL 706
TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYS+ EHE HL
Sbjct: 644 TTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHL 703
Query: 707 RQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV--- 763
R L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+V +W++PKTV
Sbjct: 704 RLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEI 763
Query: 764 ---LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 764 RSFLGLAGYYRRFIENFSKIA 784
>gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1636
Score = 523 bits (1348), Expect = e-146
Identities = 321/765 (41%), Positives = 436/765 (56%), Gaps = 58/765 (7%)
Query: 41 NKGLNDFRRHDPPKFSGGTDPDKADLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYW 100
N L +F R PP FS T+P +A W+ IEK +LQ + K+ A++ L G A W
Sbjct: 220 NNKLAEFIRVRPPTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASKW 279
Query: 101 WKGTRGIMEDNHEEIN*NSFRMAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLES 160
W R + E I F AF + + P+ A ++ +F +L QG +V E+ +
Sbjct: 280 WDHFR-LNRTTAEPITWLEFTAAFRKTHIPSGAVSLKKKEFRSLTQGSRTVTEYLHEFNR 338
Query: 161 LAKHFQFFHDHVNERYMCKRFVNGLRPDIEDSVRPLGIMRFQSLVEKATEVE------LM 214
LA++ D + +RF+ GL ++ + FQ LV+KA E
Sbjct: 339 LARYAP--EDVRTDEERQERFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQ 396
Query: 215 KNRRLN--RAGTGGPMRS----GSQNFQNRGKFQNRRP----YQRPAGRGFASGSYRPMV 264
K RR+ +A G R G Q+ G RP + AG + + RP+
Sbjct: 397 KKRRIAHFKAQQGNSQRPRLTLGPQSMPQGGSSSVVRPQCQFFNNNAGNNIRNQAPRPV- 455
Query: 265 GAAGGSGDQTQNRELTCFKCGKPGHFARACPDTRPQCYNCNKLGHTAAQCRVPKAEPTVN 324
A + Q RE + KPG C+NC GH + +C P+ V
Sbjct: 456 --AAPTQQQPAKRE----QGSKPG-----------VCFNCGDPGHYSDKCSKPRRVKVVP 498
Query: 325 T-ARGKRPAAKARVYTMDGDDTEGVDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIR 383
+ PA+KARV + + +G +I G ++ +VLFDSGATHSF+S A
Sbjct: 499 AQSNSTAPASKARVNHVAATEAQGAPDVILGTFLVNSVPTTVLFDSGATHSFLSMSFAGN 558
Query: 384 LRLPITALSFDLIVTTPAKTLLANTACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWL 443
+ + L L+V+TP+ L+ + + ANL+ L K+LDVILGMDWL
Sbjct: 559 HGMEVEDLIRPLMVSTPSNQALSLQRSPSVRIEIQEVPFLANLILLESKDLDVILGMDWL 618
Query: 444 SHYHCLLDCN*KRVVFPDSVLSEYLFANHISVSLNGGSQEYSVLLSLESKGNP-EVDSIP 502
+ Y ++DC ++V + + V+++ S E SL S+ N ++ IP
Sbjct: 619 ARYKGVIDCANRKVTLTSN--------DGRVVTVHALSSE-----SLRSRLNQMTLEEIP 665
Query: 503 VVKEFTDVFPGDVPGLPPVRDIEFAIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSK 562
+V+E+ DVFP D+PG+PP RDIEF ID+VPGT PI PYRMA EL E+K Q++DLL K
Sbjct: 666 IVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQK 725
Query: 563 GFIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIF 622
G+IRPS SPWGAPV+ V+KKD R+CVDYR LN VT+KN+YPLPRIDDL DQL+GA +F
Sbjct: 726 GYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVF 785
Query: 623 SKIDLKSGYHQIRVKTEDIQKTAFRTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLD 682
SKIDL+SGYHQ+R+K EDI KTAF TRYG +E VM FG+TNAPA FM+ MN+ F +LD
Sbjct: 786 SKIDLRSGYHQLRIKEEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLD 845
Query: 683 RFVVVFIDDILIYSKNVVEHEGHLRQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKE 742
+FVVVFIDDILIYS+ EHE HLR L+ LRE +LYA SKCEFWL EVKFLGHVIS
Sbjct: 846 KFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLFEVKFLGHVISAG 905
Query: 743 GIAVDPAKVETVLSWERPKTV------LGVSLVWRDIIVALSRIS 781
G+AVDP+ VE+V +W++PKTV LG++ +R I S+I+
Sbjct: 906 GVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIA 950
>gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 523 bits (1347), Expect = e-146
Identities = 320/787 (40%), Positives = 446/787 (56%), Gaps = 33/787 (4%)
Query: 5 TMAQAVTVQANDSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDKA 64
T+AQ + Q M ++ + Q + QNK L +F R PP FS T+P +A
Sbjct: 24 TLAQVLAQQTQ--LMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEA 80
Query: 65 DLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMAF 124
W+ IEK +LQ + K+ A++ L G A WW R + E I F AF
Sbjct: 81 GDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAF 139
Query: 125 LEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNG 184
+ + P+ ++ +F +L QG SV E+ + LA++ D N+ ++F+ G
Sbjct: 140 RKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRNDEERQEKFLEG 197
Query: 185 LRPDIEDSVRPLGIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQNRGKFQNR 244
L ++ + FQ L++KA E NR + ++ Q N+
Sbjct: 198 LNDELSYPLMTGDYSDFQKLMDKAIRQEDKYNRMEQKKRRIAHFKA--QQGSNQKPRLTL 255
Query: 245 RPYQRPAGRGFASGSYRPMVGAAGGS-GDQTQNRELTCFKCGKPGHFARACPDTRPQ-CY 302
P P +G +S RP + G+ +N+ A+ P ++P C+
Sbjct: 256 GPQSMP--QGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREPGSKPVVCF 313
Query: 303 NCNKLGHTAAQCRVPKAEPTVNT-ARGKRPAAKARVYTMDGDDTEGVDGLIRGDCEIDGN 361
NC GH A +C P+ V + PA+KARV + + + +I G ++
Sbjct: 314 NCGDPGHYADKCPKPRRVKVVPAQSNSTAPASKARVNHVAAAEAQDAPDVILGTFSVNSV 373
Query: 362 LLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLANTACMYCSVTYNNRV 421
+VLFDSGATHSF+S A + + L L+V+TP+ L+ +
Sbjct: 374 PATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVP 433
Query: 422 YHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDSVLSEYLFANHISVSLNGGS 481
+ ANL+ L K+LDVILGMDWL+ + ++DC ++V + + V+++ S
Sbjct: 434 FLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLISN--------DGRVVTVHALS 485
Query: 482 QEYSVLLSLESKGNP-EVDSIPVVKEFTDVFPGDVPGLPPVRDIEFAIDIVPGTGPISIA 540
E SL S+ N ++ IP+V+E+ DVFP D+PG+PP RDIEF ID+VPGT PI
Sbjct: 486 SE-----SLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKR 540
Query: 541 PYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKDGKSRLCVDYRQLNKVTV 600
PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD R+CVDYR LN VT+
Sbjct: 541 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTI 600
Query: 601 KNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQKTAFRTRYGHYEYLVMPF 660
KN+YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R+K EDI KTAF TRYG +E VM F
Sbjct: 601 KNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSF 660
Query: 661 GVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHEGHLRQVLQVLREKELYA 720
G+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYS+ EHE HLR L+ LRE +LYA
Sbjct: 661 GLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYA 720
Query: 721 NPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV------LGVSLVWRDII 774
SKCEFWL EVKFLGHVIS G+AVDP+ VE+V +W++PKTV LG++ +R I
Sbjct: 721 KFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFI 780
Query: 775 VALSRIS 781
S+I+
Sbjct: 781 ENFSKIA 787
>ref|XP_469373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27552560|gb|AAO19383.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1770
Score = 522 bits (1344), Expect = e-146
Identities = 328/804 (40%), Positives = 446/804 (54%), Gaps = 67/804 (8%)
Query: 5 TMAQAVTVQANDSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDKA 64
T+AQ + QA M ++ + Q + QNK L +F R PP FS T+P +A
Sbjct: 305 TLAQVLAQQAQ--LMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPIFSSTTNPVEA 361
Query: 65 DLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMAF 124
W+ IEK +LQ + K+ A++ L G A WW R + E I F AF
Sbjct: 362 GDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAF 420
Query: 125 LEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNG 184
+ + P+ ++ +F +L QG SV E+ + LA++ D + +RF+ G
Sbjct: 421 RKTHIPSGVVSLKKKEFRSLNQGSRSVTEYLHEFNRLARYA--LEDVRTDEERQERFLEG 478
Query: 185 LRPDIEDSVRPLGIMRFQSLVEKATEVE------LMKNRRLNRAGT--GGPMRS----GS 232
L ++ + FQ LV+KA E K RR+ + T G R G
Sbjct: 479 LNDELSYPLMTGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQRLRLTLGP 538
Query: 233 QNFQNRGKFQNRRP----YQRPAGRGFASGSYRPMVGAAGGSGDQTQNRELTCFKCGKPG 288
Q+ G RP + AG + + RP+ A + Q RE + KP
Sbjct: 539 QSMPQGGSSSVVRPQRQFFNNHAGNNIRNQAPRPV---AASTQQQPAKRE----QGSKP- 590
Query: 289 HFARACPDTRPQCYNCNKLGHTAAQCRVPKAEPTVNT-ARGKRPAAKARVYTMDGDDTEG 347
C+NC GH A +C P+ V + PA+KARV + + +G
Sbjct: 591 ----------VVCFNCGDPGHYADKCPKPRRVKIVPVQSNSTAPASKARVNRVAVAEAQG 640
Query: 348 VDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLAN 407
+I G ++ +VLFDSGATHSF+S A + + L L+V+TP L+
Sbjct: 641 APDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPCNQALSL 700
Query: 408 TACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDS---VL 464
+ + ANL+ L K+LDVILGMDWL+ Y ++DC ++V + V+
Sbjct: 701 QRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNEGQVV 760
Query: 465 SEYLFANHISVSLNGGSQEYSVLLSLESKGNP-EVDSIPVVKEFTDVFPGDVPGLPPVRD 523
+ Y ++ SL S+ N ++ IP+V+E+ DVFP D+PG+PP R
Sbjct: 761 TVYALSSE----------------SLRSRLNQITLEEIPIVREYPDVFPDDLPGMPPKRG 804
Query: 524 IEFAIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKD 583
IEF ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD
Sbjct: 805 IEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKD 864
Query: 584 GKSRLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQK 643
R+CVDYR LN VT+KN+YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R+K EDI K
Sbjct: 865 HTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPK 924
Query: 644 TAFRTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHE 703
TAF TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYS+ EHE
Sbjct: 925 TAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHE 984
Query: 704 GHLRQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV 763
HLR L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+V +W++PKTV
Sbjct: 985 EHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTV 1044
Query: 764 ------LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 1045 SEIRSFLGLAGYYRRFIENFSKIA 1068
>gb|AAV43988.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1594
Score = 521 bits (1343), Expect = e-146
Identities = 326/804 (40%), Positives = 443/804 (54%), Gaps = 67/804 (8%)
Query: 5 TMAQAVTVQANDSAMRRAAEEAREQHQRQREVTLDQNKGLNDFRRHDPPKFSGGTDPDKA 64
T+AQ + QA M ++ + Q + QNK L +F R PP FS +P +A
Sbjct: 186 TLAQVLAQQAQ--LMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPTFSSTNNPVEA 242
Query: 65 DLWIQEIEKIFGVLQTAEGAKLGMATYLLLGDAEYWWKGTRGIMEDNHEEIN*NSFRMAF 124
W+ IEK +LQ + K+ A++ L G A WW R + E I F AF
Sbjct: 243 GDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAF 301
Query: 125 LEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNG 184
+ + P+ ++ +F +L QG SV E+ + LA++ D + ++F+ G
Sbjct: 302 QKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRTDEERQEKFLEG 359
Query: 185 LRPDIEDSVRPLGIMRFQSLVEKATEVE------LMKNRRLN--RAGTGGPMRS----GS 232
L + + FQ LV+KA E K RR+ +A G R G
Sbjct: 360 LNDEFSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKAQQGNSQRPRLTLGP 419
Query: 233 QNFQNRGKFQNRRP----YQRPAGRGFASGSYRPMVGAAGGSGDQTQNRELTCFKCGKPG 288
Q+ G RP + AG + + RP+ + TQ + + KPG
Sbjct: 420 QSMPQGGSSSVVRPQRQFFNHNAGNNIRNQAPRPVAAS-------TQQQPAKKEQGSKPG 472
Query: 289 HFARACPDTRPQCYNCNKLGHTAAQCRVPKAEPTVNT-ARGKRPAAKARVYTMDGDDTEG 347
C+NC GH A +C P+ V + PA+KARV + + +G
Sbjct: 473 -----------VCFNCGDPGHYADKCPKPRRMKVVPVQSNSTAPASKARVNHVAAAEAQG 521
Query: 348 VDGLIRGDCEIDGNLLSVLFDSGATHSFISRECAIRLRLPITALSFDLIVTTPAKTLLAN 407
+I G ++ +VLFDSGATHSF+S A + + L L+V+TP+ L+
Sbjct: 522 APDVILGTFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSL 581
Query: 408 TACMYCSVTYNNRVYHANLVCLTLKNLDVILGMDWLSHYHCLLDCN*KRVVFPDS----V 463
+ + ANL+ L K+LDVILGMDWL + ++DC ++V + V
Sbjct: 582 QRSPSVRIEIQEVPFLANLILLESKDLDVILGMDWLDRHKGVIDCANRKVTLTSNDGRVV 641
Query: 464 LSEYLFANHISVSLNGGSQEYSVLLSLESKGNPEVDSIPVVKEFTDVFPGDVPGLPPVRD 523
L + + SLN ++LE IP+V+E+ DVFP D+PG+PP RD
Sbjct: 642 TVHALSSESLRPSLNQ--------ITLEE--------IPIVREYPDVFPDDLPGMPPKRD 685
Query: 524 IEFAIDIVPGTGPISIAPYRMAPAELVELKSQLEDLLSKGFIRPSVSPWGAPVLLVKKKD 583
IEF ID+VPGT PI PYRMA EL E+K Q++DLL KG+IRPS SPWGAPV+ V+KKD
Sbjct: 686 IEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKD 745
Query: 584 GKSRLCVDYRQLNKVTVKNRYPLPRIDDLMDQLRGAAIFSKIDLKSGYHQIRVKTEDIQK 643
R+CVDYR LN VT+KN+YPLPRIDDL DQL+GA +FSKIDL+SGYHQ+R+K EDI K
Sbjct: 746 HTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPK 805
Query: 644 TAFRTRYGHYEYLVMPFGVTNAPAIFMDYMNRTFHTFLDRFVVVFIDDILIYSKNVVEHE 703
TAF TRYG +E VM FG+TNAPA FM+ MN+ F +LD+FVVVFIDDILIYS+ EHE
Sbjct: 806 TAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHE 865
Query: 704 GHLRQVLQVLREKELYANPSKCEFWLEEVKFLGHVISKEGIAVDPAKVETVLSWERPKTV 763
HLR L+ LRE +LYA SKCEFWL EVKFLGHVIS G+AVDP+ VE+V +W++PKTV
Sbjct: 866 EHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTV 925
Query: 764 ------LGVSLVWRDIIVALSRIS 781
LG++ +R I S+I+
Sbjct: 926 SEIRSFLGLAGYYRRFIENFSKIA 949
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.345 0.152 0.510
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,246,514,892
Number of Sequences: 2540612
Number of extensions: 89840289
Number of successful extensions: 494062
Number of sequences better than 10.0: 38209
Number of HSP's better than 10.0 without gapping: 2650
Number of HSP's successfully gapped in prelim test: 35679
Number of HSP's that attempted gapping in prelim test: 407024
Number of HSP's gapped (non-prelim): 53675
length of query: 1469
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1328
effective length of database: 505,134,102
effective search space: 670818087456
effective search space used: 670818087456
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0016.15