BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0014.22
         (284 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_705766.2| zinc finger, CCHC domain containing 6 [Mus musc...    35  2.4
emb|CAI74188.1| hypothetical protein [Theileria annulata]              35  2.4
sp|Q5BLK4|ZCHC6_MOUSE Zinc finger CCHC domain containing protein 6     35  2.4
ref|XP_585511.1| PREDICTED: similar to Protein BAP28, partial [B...    33  7.1
ref|XP_541276.1| PREDICTED: similar to Proprotein convertase sub...    33  9.2

>ref|NP_705766.2| zinc finger, CCHC domain containing 6 [Mus musculus]
           gi|60688060|gb|AAH43111.1| Zinc finger, CCHC domain
           containing 6 [Mus musculus]
          Length = 1474

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 175 GKSDYKVVDLHPKLRIWHKILLHCINQRPK-GSSPDYINFCQKAMLFFIQDKRKICLPFF 233
           GK + ++V L    R W K+   C   RP+ G  P Y+ F   A+ FF+Q +++  LP +
Sbjct: 427 GKLEPRLVPLVIAFRYWAKL---CSIDRPEEGGLPPYV-FALMAV-FFLQQRKEPLLPVY 481

Query: 234 LFSYLKECIRKSITTASIKSAIK 256
           L S+++E     +   S+K   K
Sbjct: 482 LGSWIEEFSLNKLGNFSLKDVEK 504


>emb|CAI74188.1| hypothetical protein [Theileria annulata]
          Length = 589

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 1/67 (1%)

Query: 206 SSPDYINFCQKAMLFFIQDKRKICLPFFLF-SYLKECIRKSITTASIKSAIKYIPFGRLL 264
           S P Y   C K   F++Q+K  I      F S+ K+ I+ SI  +SIKS++K      ++
Sbjct: 281 SFPGYKRRCSKLFRFWVQEKDLIKFKSIRFLSHNKDVIKSSIVKSSIKSSVKSTAIKSIV 340

Query: 265 SDLFIES 271
               IE+
Sbjct: 341 KSPVIEN 347


>sp|Q5BLK4|ZCHC6_MOUSE Zinc finger CCHC domain containing protein 6
          Length = 1491

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 175 GKSDYKVVDLHPKLRIWHKILLHCINQRPK-GSSPDYINFCQKAMLFFIQDKRKICLPFF 233
           GK + ++V L    R W K+   C   RP+ G  P Y+ F   A+ FF+Q +++  LP +
Sbjct: 427 GKLEPRLVPLVIAFRYWAKL---CSIDRPEEGGLPPYV-FALMAV-FFLQQRKEPLLPVY 481

Query: 234 LFSYLKECIRKSITTASIKSAIK 256
           L S+++E     +   S+K   K
Sbjct: 482 LGSWIEEFSLNKLGNFSLKDVEK 504


>ref|XP_585511.1| PREDICTED: similar to Protein BAP28, partial [Bos taurus]
          Length = 1524

 Score = 33.5 bits (75), Expect = 7.1
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 125  GRRIIIIEKSIVNLLGAHTGTGYRFQLTESKVKPRTKDETNKALY------TTYKPGKSD 178
            G  I  + ++ ++ L   +G   +F L    V P+ ++ T+ A Y      T ++  +S+
Sbjct: 928  GSPIKEVRRAAIHCLQVLSGVASQFHLVIDHVVPKAEEITSDATYVVQDLATLFEELQSE 987

Query: 179  YKVVDLHPKLRIWHKILLHCINQRPKGSSPDYINFCQKAMLFFIQ 223
             K+   H KL    K LLHC+   P   + D +      +L  I+
Sbjct: 988  KKLKS-HQKLSETLKNLLHCVYSCPSYVTKDLMKLVLSQLLSMIE 1031


>ref|XP_541276.1| PREDICTED: similar to Proprotein convertase subtilisin/kexin type 5
           precursor (Proprotein convertase PC5)
           (Subtilisin/kexin-like protease PC5) (PC6)
           (Subtilisin-like proprotein convertase 6) (SPC6) [Canis
           familiaris]
          Length = 2416

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 153 ESKVKPRTKDETNKALYTTYKPGKS-DYKVVDLHPKLRI-WHKILLHCIN 200
           ES  KP   +E +  L TTY  G+S D K+       +  WH ++LHC N
Sbjct: 543 ESGKKPWYLEECSSTLATTYSSGESYDKKIYSASQSTKTEWHLLVLHCKN 592


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.322    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,220,815
Number of Sequences: 2540612
Number of extensions: 20465968
Number of successful extensions: 41011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 41008
Number of HSP's gapped (non-prelim): 7
length of query: 284
length of database: 863,360,394
effective HSP length: 126
effective length of query: 158
effective length of database: 543,243,282
effective search space: 85832438556
effective search space used: 85832438556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)