BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0014.18
(181 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 57 2e-07
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 55 7e-07
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 54 3e-06
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 52 6e-06
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 51 1e-05
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 51 2e-05
ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thal... 50 2e-05
ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cu... 50 3e-05
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 50 4e-05
ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana] 50 4e-05
ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana] 49 8e-05
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 48 1e-04
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali... 48 1e-04
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8... 48 1e-04
dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cul... 48 1e-04
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 47 2e-04
pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana g... 47 3e-04
ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana] 46 5e-04
ref|NP_175065.1| hypothetical protein [Arabidopsis thaliana] 45 7e-04
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 44 0.003
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 57.0 bits (136), Expect = 2e-07
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 20 IRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGI 79
+ W P D WVKLN+DGA + +A G++RD + +A +G S AELWG+
Sbjct: 839 VAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGV 898
Query: 80 LCGARLLQERDY*RVLIETNLSIL 103
G + ER + RV +E + ++
Sbjct: 899 YYGLYMAWERRFTRVELEVDSELV 922
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 55.5 bits (132), Expect = 7e-07
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 19 AIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWG 78
+I+W P W KLN+DGA + +A G++RD + + + +G S AELWG
Sbjct: 449 SIKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELWG 508
Query: 79 ILCGARLLQERDY*RVLIETNLSIL 103
+ G + ER R+ +E + +++
Sbjct: 509 VYYGLHIAWERGIRRLELEVDSTLV 533
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 53.5 bits (127), Expect = 3e-06
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 20 IRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGI 79
I W WV +N+DGA + A G+IRD ++++ +A +G S AELWG+
Sbjct: 506 IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGV 565
Query: 80 LCGARLLQERDY*RVLIETNLSIL 103
G + ER + RV +E + +++
Sbjct: 566 YYGLVVAWERGWRRVRLEVDSALV 589
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 52.4 bits (124), Expect = 6e-06
Identities = 33/98 (33%), Positives = 50/98 (50%), Gaps = 9/98 (9%)
Query: 2 LRVAQVTRVVSPVRDAPAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIA 61
+RV++V R+VS W + WVKLN+DGA + A G++RD A++
Sbjct: 142 VRVSRVERLVS---------WVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGG 192
Query: 62 YARRLGSYSTLQAELWGILCGARLLQERDY*RVLIETN 99
+A +G S AELWG+ G + R RV +E +
Sbjct: 193 FAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVD 230
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 51.2 bits (121), Expect = 1e-05
Identities = 25/75 (33%), Positives = 42/75 (55%)
Query: 29 WVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILCGARLLQE 88
WVK+N+DGA + +A+ G++RD A+ ++ +G S QAELWG+ G E
Sbjct: 568 WVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWE 627
Query: 89 RDY*RVLIETNLSIL 103
+ RV +E + ++
Sbjct: 628 KKVPRVELEVDSEVI 642
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 50.8 bits (120), Expect = 2e-05
Identities = 29/84 (34%), Positives = 44/84 (51%)
Query: 20 IRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGI 79
I W + W KLN+DGA + +A+ G++RD A+ +A +G S AELWG+
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203
Query: 80 LCGARLLQERDY*RVLIETNLSIL 103
G + ER R+ IE + I+
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIV 227
>ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 594
Score = 50.4 bits (119), Expect = 2e-05
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 20 IRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGI 79
I W WV +N+DGA + A G+IRD ++++ +A +G S AELWG+
Sbjct: 493 IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGV 552
Query: 80 LCGARLLQERDY*RVLIETNLSILGVVLVLIPVLLL 115
G + ER + + LS GV ++P L L
Sbjct: 553 YYGLVVAWER-----VRDWGLSSAGVPGAVVPWLYL 583
>ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|48717057|dbj|BAD23746.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 212
Score = 50.1 bits (118), Expect = 3e-05
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 22 WWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILC 81
W +A W+KLN DG+ + +A+ G+ RD AFV+ YA R+G ++ AEL +
Sbjct: 51 WRKPEAGWIKLNFDGSSKHATKIASIGGVYRDHEGAFVLGYAERIGRATSSVAELAALRR 110
Query: 82 GARLLQERDY*RVLIE 97
G L+ + RV E
Sbjct: 111 GLELVVRNGWRRVWAE 126
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 49.7 bits (117), Expect = 4e-05
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 23 WPLDAV-WVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILC 81
W L V WVK+N+DGA + +A+ G++RD A+ ++ +G S AELWG+
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 82 GARLLQERDY*RVLIETN 99
G E+ RV +E +
Sbjct: 200 GLYFAWEKKVPRVELEVD 217
>ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 49.7 bits (117), Expect = 4e-05
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 23 WPLDAV-WVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILC 81
W L V WVK+N+DGA + +A+ G++RD A+ ++ +G S AELWG+
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 82 GARLLQERDY*RVLIETN 99
G E+ RV +E +
Sbjct: 200 GLYFAWEKKVPRVELEVD 217
>ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]
Length = 175
Score = 48.5 bits (114), Expect = 8e-05
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 20 IRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGI 79
+RW W KLN+DGA + +A G +R+ + + +A +G S AELWG+
Sbjct: 5 VRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELWGV 64
Query: 80 LCGARLLQERDY*RVLIETN 99
G + +R R+ +E +
Sbjct: 65 YYGLFMAWDRGITRLELEVD 84
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 48.1 bits (113), Expect = 1e-04
Identities = 26/84 (30%), Positives = 41/84 (47%)
Query: 20 IRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGI 79
I W W +N+DGA + A RG++RD +++ +A +G S AELWG+
Sbjct: 226 IVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELWGV 285
Query: 80 LCGARLLQERDY*RVLIETNLSIL 103
G ER RV++E ++
Sbjct: 286 YYGLVTAWERGVRRVVLEVESKLV 309
>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
gi|18394475|ref|NP_564020.1| hypothetical protein
[Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 47.8 bits (112), Expect = 1e-04
Identities = 25/75 (33%), Positives = 36/75 (47%)
Query: 15 RDAPAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQA 74
R+ I W P W KLN+DGA + +A G++RD + ++ +G S A
Sbjct: 97 REERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLA 156
Query: 75 ELWGILCGARLLQER 89
ELWG G + ER
Sbjct: 157 ELWGAYYGLNIAWER 171
>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
F1L3.4 [imported] - Arabidopsis thaliana
Length = 253
Score = 47.8 bits (112), Expect = 1e-04
Identities = 25/75 (33%), Positives = 36/75 (47%)
Query: 15 RDAPAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQA 74
R+ I W P W KLN+DGA + +A G++RD + ++ +G S A
Sbjct: 78 REERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLA 137
Query: 75 ELWGILCGARLLQER 89
ELWG G + ER
Sbjct: 138 ELWGAYYGLNIAWER 152
>dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 240
Score = 47.8 bits (112), Expect = 1e-04
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 17 APAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAEL 76
A A W + W+KLN DG+ S +A+ G+ RD AF++ YA R+G+ ++ AEL
Sbjct: 74 ASARIWRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAEL 133
Query: 77 WGILCGARLLQERDY*RVLIE 97
+ G L + RV E
Sbjct: 134 AALRRGLELAVRNGWRRVWAE 154
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 47.0 bits (110), Expect = 2e-04
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 14 VRDAPAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQ 73
VR IRW WVK+ +DGA + +AA G IR+ ++ +A +GS +
Sbjct: 1055 VRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPL 1114
Query: 74 AELWGILCGARLLQERDY*RVLIETNLSIL 103
AELWG G + ++ + RV ++ + ++
Sbjct: 1115 AELWGAYYGLLIAWDKGFRRVELDLDCKLV 1144
>pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana
gi|6630448|gb|AAF19536.1| F23N19.5 [Arabidopsis
thaliana]
Length = 233
Score = 46.6 bits (109), Expect = 3e-04
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 20 IRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGI 79
+RW W KLN+DGA + +A G +R+ + + +A +G AELWG+
Sbjct: 63 VRWSKPSLGWCKLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGV 122
Query: 80 LCGARLLQERDY*RVLIETN 99
G + +R R+ +E +
Sbjct: 123 YYGLFMAWDRGITRLELEVD 142
>ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana]
Length = 214
Score = 45.8 bits (107), Expect = 5e-04
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 15 RDAPAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQA 74
R+ I W L W KLN+DGA + +AA G++R+ + +A +G S A
Sbjct: 39 REERLISWSRLSEGWCKLNTDGASRGNPGLAAAGGVLRESNGEWRRGFAINIGICSAPLA 98
Query: 75 ELWGILCG 82
ELWG+ G
Sbjct: 99 ELWGVYYG 106
>ref|NP_175065.1| hypothetical protein [Arabidopsis thaliana]
Length = 126
Score = 45.4 bits (106), Expect = 7e-04
Identities = 21/61 (34%), Positives = 35/61 (56%)
Query: 29 WVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYARRLGSYSTLQAELWGILCGARLLQE 88
W+KLN+DGA + ++ G++RDR ++ ++ +G + AELWG+ G LL
Sbjct: 65 WLKLNTDGASRGNPTLSTAGGVLRDREGEWLGGFSLNIGRRTAPVAELWGVYYGLFLLGR 124
Query: 89 R 89
R
Sbjct: 125 R 125
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 43.5 bits (101), Expect = 0.003
Identities = 31/97 (31%), Positives = 43/97 (43%), Gaps = 2/97 (2%)
Query: 4 VAQVTRVVSPVRDAPAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSAFVIAYA 63
V + V R IRW WVKL +DGA +AA G I + ++ +A
Sbjct: 784 VGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFA 843
Query: 64 RRLGSYSTLQAELWGILCGARLLQERDY*RVLIETNL 100
+GS AELWG G + ++ + RV E NL
Sbjct: 844 LNIGSCDAPLAELWGAYYGLLIAWDKGFRRV--ELNL 878
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.336 0.145 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,814,279
Number of Sequences: 2540612
Number of extensions: 9060061
Number of successful extensions: 49610
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 49570
Number of HSP's gapped (non-prelim): 49
length of query: 181
length of database: 863,360,394
effective HSP length: 120
effective length of query: 61
effective length of database: 558,486,954
effective search space: 34067704194
effective search space used: 34067704194
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0014.18