BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0013.3
(324 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 362 8e-99
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 355 1e-96
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2... 352 1e-95
pir||E96608 probable retroelement polyprotein F25P12.89 [importe... 352 1e-95
emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis th... 351 1e-95
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 351 1e-95
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 350 3e-95
gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|A... 350 3e-95
emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|30212... 348 9e-95
ref|NP_194047.2| protein kinase family protein [Arabidopsis thal... 348 9e-95
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 343 4e-93
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 340 4e-92
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 338 1e-91
dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana] 336 5e-91
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 334 2e-90
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 333 4e-90
gb|AAF69161.1| F27F5.19 [Arabidopsis thaliana] gi|25301673|pir||... 332 7e-90
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 329 6e-89
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 328 1e-88
emb|CAB77940.1| putative polyprotein [Arabidopsis thaliana] gi|4... 327 4e-88
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 362 bits (929), Expect = 8e-99
Identities = 177/327 (54%), Positives = 237/327 (72%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI ALE N TW + LP G KA+G KWVY+IK NADG+L RYKARLVAKGY Q EGLDY
Sbjct: 934 EITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAKGYTQTEGLDYV 993
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVP-----TM 117
DTFSPVAKLTTV++++A+AAA+ W L QLD+ NAFL+G+LDE++YM +P G +
Sbjct: 994 DTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSF 1053
Query: 118 KPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
PN VC+L+KSLYGLKQASR+WY K S L+ LG++Q++ DH+LF + + +LVYV
Sbjct: 1054 PPNAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYV 1113
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD+I+ +C E ++++D+L + ++DL L+YFLGLE+A ++ GIS+CQRKY L+LL
Sbjct: 1114 DDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLELLA 1173
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
ETG LG K S P++P+ KL GE DA YR+LVG+L+YLT TRPDI++A +L Q
Sbjct: 1174 ETGLLGCKSSSVPMEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQ 1233
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
F S P H KA +++ +LK + G G
Sbjct: 1234 FTSAPRVPHLKAVYKIIYYLKGTVGQG 1260
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 355 bits (910), Expect = 1e-96
Identities = 175/329 (53%), Positives = 231/329 (70%), Gaps = 5/329 (1%)
Query: 1 KAEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLD 60
K EI A+ + TW +V LP KAIG KWV+ IK NADG++ RYKARLVAKGY Q EGLD
Sbjct: 934 KEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLD 993
Query: 61 YFDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGV-----P 115
Y +TFSPVAKLT+VRM+L LAA W +HQLD+ NAFL+G LDE++YM IP G
Sbjct: 994 YEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGE 1053
Query: 116 TMKPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLV 175
+ P+ +C+L KS+YGLKQASR+WY KLS+ L+ +G+ ++ +DH+LF+K+ + + G+LV
Sbjct: 1054 ALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLV 1113
Query: 176 YVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDL 235
YVDD+++ N L + F ++DL KYFLG+E+A S GIS+CQRKY L+L
Sbjct: 1114 YVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILEL 1173
Query: 236 LTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQL 295
L+ TG LGSKP S PLDPS KL G P +D+T+YR+LVG+L+YL TRPDI++A L
Sbjct: 1174 LSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTL 1233
Query: 296 SQFMSNPMTDHYKAALRVLRFLKTSPGLG 324
QF P + H A +VLR+LK + G G
Sbjct: 1234 CQFSHAPTSVHLSAVHKVLRYLKGTVGQG 1262
>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
probable polyprotein T8L23.26 [imported] - Arabidopsis
thaliana
Length = 1468
Score = 352 bits (902), Expect = 1e-95
Identities = 170/323 (52%), Positives = 237/323 (72%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AEI +L N+T+ IV+LP G +A+GNKWVY+IK +DG + RYKARLV G Q EG+DY
Sbjct: 977 AEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDY 1036
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQ 121
+TF+PVAK++TVR+ L +AAA++WH+HQ+DV NAFLHG L E+VYM +P G P++
Sbjct: 1037 DETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSK 1096
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
VC+L KSLYGLKQA R W+ KLSS L+ G++Q+ SD+SLF D +F +LVYVDD+I
Sbjct: 1097 VCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLI 1156
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ G+C K L + F +KDL +LKYFLG+EV+ ++ G L QRKY LD+++E G
Sbjct: 1157 ISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGL 1216
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG++P + PL+ + KL ++ SD++ YRRLVGRL+YL TRP++S++ L+QFM N
Sbjct: 1217 LGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQN 1276
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P DH+ AA+RV+R+LK++PG G
Sbjct: 1277 PRQDHWNAAIRVVRYLKSNPGQG 1299
>pir||E96608 probable retroelement polyprotein F25P12.89 [imported] - Arabidopsis
thaliana gi|9954746|gb|AAG09097.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 352 bits (902), Expect = 1e-95
Identities = 178/322 (55%), Positives = 226/322 (69%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI +LE TW + DLP G KA+G KWV+R+K +DGTL R+KARLV G NQ EGLDY
Sbjct: 996 EIGSLENLGTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNNQTEGLDYT 1055
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PVAK+ TVR L + +W +HQ+DV NAFLHG LDE+VYM P G T +V
Sbjct: 1056 ETFAPVAKMVTVRAFLQQVVSLDWEVHQMDVHNAFLHGDLDEEVYMQFPPGFRTGDKTKV 1115
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVIL 182
C+L+KSLYGLKQA R W+ KL+S L+N G+ Q SD+SLF+ ++ + +LVYVDD+I+
Sbjct: 1116 CRLRKSLYGLKQAPRCWFAKLTSALKNYGFIQDISDYSLFIFHKNGVRLHVLVYVDDLII 1175
Query: 183 FGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTL 242
G +A K L + F +KDL IL+YFLG+EVA S GI LCQRKY LD++TETG L
Sbjct: 1176 TGTTIAVITEFKHYLSSCFYMKDLGILRYFLGIEVARSPEGIYLCQRKYALDIITETGLL 1235
Query: 243 GSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNP 302
G KP S PLD + KL GE D YRRLVGR++YL TTRP++S+ LSQFM NP
Sbjct: 1236 GVKPASFPLDQNHKLAFATGETIDDPLRYRRLVGRIIYLATTRPELSYVIHILSQFMHNP 1295
Query: 303 MTDHYKAALRVLRFLKTSPGLG 324
H++AALRV+R+LK+SPG G
Sbjct: 1296 KPAHWEAALRVVRYLKSSPGQG 1317
>emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|2961349|emb|CAA18107.1| LTR retrotransposon like
protein [Arabidopsis thaliana] gi|11358464|pir||T49111
hypothetical retrovirus-related pol polyprotein
AT4g22040 - Arabidopsis thaliana
Length = 1109
Score = 351 bits (901), Expect = 1e-95
Identities = 170/323 (52%), Positives = 237/323 (72%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AEI +L N+T+ IV+LP G +A+GNKWVY+IK +DG + RYKARLV G Q EG+DY
Sbjct: 618 AEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDY 677
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQ 121
+TF+PVAK++TVR+ L +AAA++WH+HQ+DV NAFLHG L E+VYM +P G P++
Sbjct: 678 DETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSK 737
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
VC+L KSLYGLKQA R W+ KLSS L+ G++Q+ SD+SLF D +F +LVYVDD+I
Sbjct: 738 VCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLI 797
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ G+C K L + F +KDL +LKYFLG+EV+ ++ G L QRKY LD+++E G
Sbjct: 798 ISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGL 857
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG++P + PL+ + KL ++ SD++ YRRLVGRL+YL TRP++S++ L+QFM N
Sbjct: 858 LGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQN 917
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P DH+ AA+RV+R+LK++PG G
Sbjct: 918 PRQDHWNAAIRVVRYLKSNPGQG 940
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 351 bits (901), Expect = 1e-95
Identities = 170/323 (52%), Positives = 237/323 (72%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AEI +L N+T+ IV+LP G +A+GNKWVY+IK +DG + RYKARLV G Q EG+DY
Sbjct: 618 AEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDY 677
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQ 121
+TF+PVAK++TVR+ L +AAA++WH+HQ+DV NAFLHG L E+VYM +P G P++
Sbjct: 678 DETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSK 737
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
VC+L KSLYGLKQA R W+ KLSS L+ G++Q+ SD+SLF D +F +LVYVDD+I
Sbjct: 738 VCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLI 797
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ G+C K L + F +KDL +LKYFLG+EV+ ++ G L QRKY LD+++E G
Sbjct: 798 ISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGL 857
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG++P + PL+ + KL ++ SD++ YRRLVGRL+YL TRP++S++ L+QFM N
Sbjct: 858 LGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQN 917
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P DH+ AA+RV+R+LK++PG G
Sbjct: 918 PRQDHWNAAIRVVRYLKSNPGQG 940
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|7444418|pir||T00499 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1496
Score = 350 bits (898), Expect = 3e-95
Identities = 179/323 (55%), Positives = 233/323 (71%), Gaps = 2/323 (0%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI ALE N TW I DLP G KAI +KWVY++K N+DGTL R+KARLV G +Q EG+D+
Sbjct: 1006 EIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFK 1065
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PVAKLTTVR +LA+AAA++W +HQ+DV NAFLHG L+E+VYM +P G P++V
Sbjct: 1066 ETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKV 1125
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLF-VKFQDTLFAGLLVYVDDVI 181
C+L+KSLYGLKQA R W+ KLS+ LRN+G++Q+ D+SLF +K DT+ +LVYVDD+I
Sbjct: 1126 CRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTII-HVLVYVDDLI 1184
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ GN L K LH F +KDL LKYFLGLEV+ G L QRKY LD++ ETG
Sbjct: 1185 VAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGL 1244
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG KP + P+ + KL G +++ YRRLVGR +YLT TRPD+S+A LSQFM
Sbjct: 1245 LGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQA 1304
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P+ H++AALR++R+LK SP G
Sbjct: 1305 PLVAHWEAALRLVRYLKGSPAQG 1327
>gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|AAM98191.1| unknown
protein [Arabidopsis thaliana]
Length = 776
Score = 350 bits (898), Expect = 3e-95
Identities = 179/323 (55%), Positives = 233/323 (71%), Gaps = 2/323 (0%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI ALE N TW I DLP G KAI +KWVY++K N+DGTL R+KARLV G +Q EG+D+
Sbjct: 286 EIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFK 345
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PVAKLTTVR +LA+AAA++W +HQ+DV NAFLHG L+E+VYM +P G P++V
Sbjct: 346 ETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKV 405
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLF-VKFQDTLFAGLLVYVDDVI 181
C+L+KSLYGLKQA R W+ KLS+ LRN+G++Q+ D+SLF +K DT+ +LVYVDD+I
Sbjct: 406 CRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTII-HVLVYVDDLI 464
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ GN L K LH F +KDL LKYFLGLEV+ G L QRKY LD++ ETG
Sbjct: 465 VAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGL 524
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG KP + P+ + KL G +++ YRRLVGR +YLT TRPD+S+A LSQFM
Sbjct: 525 LGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQA 584
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P+ H++AALR++R+LK SP G
Sbjct: 585 PLVAHWEAALRLVRYLKGSPAQG 607
>emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|3021268|emb|CAA18463.1|
putative protein [Arabidopsis thaliana]
gi|7485945|pir||T04833 hypothetical protein F21P8.50 -
Arabidopsis thaliana
Length = 1240
Score = 348 bits (894), Expect = 9e-95
Identities = 174/327 (53%), Positives = 228/327 (69%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI A+E TW+I LP K IG KWVY+IK N+DGT+ RYKARLVAKGY Q EG+D+
Sbjct: 105 EIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFI 164
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVP-----TM 117
+TFSPV KLT+V+++LA++A N+ LHQLD+ NAFL+G LDE++YM +P G ++
Sbjct: 165 ETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSL 224
Query: 118 KPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
PN VC L+KS+YGLKQASR+W+ K S L G+ Q+ SDH+ F+K TLF +LVYV
Sbjct: 225 PPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYV 284
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD+I+ N A +K L + F ++DL LKYFLGLE+A S+ GI++CQRKY LDLL
Sbjct: 285 DDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLD 344
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
ETG LG KP S P+DPS + G + DA AYRRL+GRL+YL TR DISFA +LSQ
Sbjct: 345 ETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQ 404
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
F P H +A +++L ++K + G G
Sbjct: 405 FSEAPRLAHQQAVMKILHYIKGTVGQG 431
>ref|NP_194047.2| protein kinase family protein [Arabidopsis thaliana]
Length = 1262
Score = 348 bits (894), Expect = 9e-95
Identities = 174/327 (53%), Positives = 228/327 (69%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI A+E TW+I LP K IG KWVY+IK N+DGT+ RYKARLVAKGY Q EG+D+
Sbjct: 105 EIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFI 164
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVP-----TM 117
+TFSPV KLT+V+++LA++A N+ LHQLD+ NAFL+G LDE++YM +P G ++
Sbjct: 165 ETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSL 224
Query: 118 KPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
PN VC L+KS+YGLKQASR+W+ K S L G+ Q+ SDH+ F+K TLF +LVYV
Sbjct: 225 PPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYV 284
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD+I+ N A +K L + F ++DL LKYFLGLE+A S+ GI++CQRKY LDLL
Sbjct: 285 DDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLD 344
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
ETG LG KP S P+DPS + G + DA AYRRL+GRL+YL TR DISFA +LSQ
Sbjct: 345 ETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQ 404
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
F P H +A +++L ++K + G G
Sbjct: 405 FSEAPRLAHQQAVMKILHYIKGTVGQG 431
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301700|pir||G84542 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 343 bits (880), Expect = 4e-93
Identities = 167/321 (52%), Positives = 229/321 (71%)
Query: 4 IAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYFD 63
I A E+N TW I DLP G +AIG++WVY++K N+DG++ RYKARLVA G Q EG DY +
Sbjct: 844 IDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGE 903
Query: 64 TFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQVC 123
TF+PVAK+ TVR+ L +A +NW +HQ+DV NAFLHG L E+VYM +P G PN+VC
Sbjct: 904 TFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVC 963
Query: 124 KLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVILF 183
+L+K+LYGLKQA R W+EKL++ L+ G+ Q+ +D+SLF + ++ +L+YVDD+I+
Sbjct: 964 RLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIIT 1023
Query: 184 GNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTLG 243
GN Q K+ L + F +KDL LKYFLG+EVA S+ GI +CQRKY LD+++ETG LG
Sbjct: 1024 GNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLG 1083
Query: 244 SKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNPM 303
KP + PL+ + KL ++ +D YRRLVGRL+YL TR D++F+ L++FM P
Sbjct: 1084 VKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPR 1143
Query: 304 TDHYKAALRVLRFLKTSPGLG 324
DH+ AALRV+R+LK PG G
Sbjct: 1144 EDHWAAALRVVRYLKADPGQG 1164
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 340 bits (871), Expect = 4e-92
Identities = 171/328 (52%), Positives = 229/328 (69%), Gaps = 5/328 (1%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AEI A+EK TW+I LP+G KA+G KWV+ +K ADG L RYKARLVAKGY Q EGLDY
Sbjct: 958 AEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDY 1017
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMK--- 118
DTFSPVAK+TT++++L ++A++ W L QLDV NAFL+G L+E+++M IP G K
Sbjct: 1018 TDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIV 1077
Query: 119 --PNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVY 176
N V +L++S+YGLKQASR+W++K SS L +LG+ + DH+LF+K D F +LVY
Sbjct: 1078 LPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVY 1137
Query: 177 VDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLL 236
VDD+++ A + + L F ++DL LKYFLGLEVA ++ GIS+CQRKY L+LL
Sbjct: 1138 VDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELL 1197
Query: 237 TETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLS 296
TG L KPVS P+ P+ K+ + G+ D YRR+VG+L+YLT TRPDI+FA +L
Sbjct: 1198 QSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLC 1257
Query: 297 QFMSNPMTDHYKAALRVLRFLKTSPGLG 324
QF S P T H AA RVL+++K + G G
Sbjct: 1258 QFSSAPRTTHLTAAYRVLQYIKGTVGQG 1285
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301674|pir||D84639 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1156
Score = 338 bits (867), Expect = 1e-91
Identities = 170/322 (52%), Positives = 224/322 (68%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ALE N+TW IVDLP G AIG++WVY+ K NADG++ RYKARLV +G Q+EG DY
Sbjct: 658 EVDALEINKTWDIVDLPPGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQVEGEDYN 717
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PV K+TTVR +L L AA W ++Q+DV+NAFLHG LDE+VYM +P G P++V
Sbjct: 718 ETFAPVVKMTTVRTLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKV 777
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVIL 182
C+L+KSLYGLKQA R W++KLS L G+ Q D+S F ++ + +LVYVDD+++
Sbjct: 778 CRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFFSYTRNGIELRVLVYVDDLLI 837
Query: 183 FGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTL 242
GN Q K+ L F +KDL LKYFLG+EV+ S GI L QRKY LD++T++G L
Sbjct: 838 CGNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNL 897
Query: 243 GSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNP 302
G +P TPL+ + L + G +DA YRRLVGRLLYL TRP++S++ LSQFM P
Sbjct: 898 GCRPALTPLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQFMQTP 957
Query: 303 MTDHYKAALRVLRFLKTSPGLG 324
H AA+R++RFLK SPG G
Sbjct: 958 REAHLAAAMRIVRFLKGSPGQG 979
>dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana]
Length = 509
Score = 336 bits (862), Expect = 5e-91
Identities = 168/326 (51%), Positives = 219/326 (66%), Gaps = 4/326 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ +E N+TW +V LP +G KWVY I+ NADG++ RYKARLVAKG+ Q EG+DYF
Sbjct: 6 ELGVMELNKTWSVVSLPPNKNVVGCKWVYTIEYNADGSIERYKARLVAKGFTQQEGVDYF 65
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVP----TMK 118
DTFSPVAKL +V++VL L A + W Q+DV NAFLH L+E++YM++ G ++
Sbjct: 66 DTFSPVAKLASVKLVLGLVARKGWSTTQMDVTNAFLHSDLEEEIYMSLAQGYTPSSGSLP 125
Query: 119 PNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVD 178
PN VC+L KS+YGLKQASR+WY+ LS L + G+ Q+ D++LFVK T +L+YVD
Sbjct: 126 PNPVCRLHKSIYGLKQASRQWYKCLSQTLLDDGFQQSYVDNTLFVKITSTAIVAMLIYVD 185
Query: 179 DVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTE 238
D+++ N VK L + IKDL K+FLGLE+A +S GIS+CQRKYCLDLL
Sbjct: 186 DILIVSNNDEVVCAVKSVLAARYKIKDLGPAKFFLGLEIARNSDGISICQRKYCLDLLAN 245
Query: 239 TGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQF 298
+G LG KP S P+DP L + G D YR L+GRLLYL TRPDI+FA LSQF
Sbjct: 246 SGLLGCKPKSVPMDPKVVLTKDLGTLLEDGRPYRELIGRLLYLCVTRPDITFAVHNLSQF 305
Query: 299 MSNPMTDHYKAALRVLRFLKTSPGLG 324
+S P H AA +VL++LK +PG G
Sbjct: 306 LSCPTNVHLHAAHQVLKYLKNNPGQG 331
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 334 bits (857), Expect = 2e-90
Identities = 167/322 (51%), Positives = 224/322 (68%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ALE N+TW IVDLP G AIG++WV++ K N+DGT+ RYKARLV +G Q+EG DY
Sbjct: 1011 EVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYK 1070
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PV ++TTVR +L AA W ++Q+DV NAFLHG L+E+VYM +P G P++V
Sbjct: 1071 ETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKV 1130
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVIL 182
C+L+KSLYGLKQA R W++KLS L G+ Q+ D+SLF ++ + +L+YVDD+++
Sbjct: 1131 CRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLI 1190
Query: 183 FGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTL 242
GN Q KD L F +KDL LKYFLG+EV+ GI L QRKY LD++ ++G L
Sbjct: 1191 CGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNL 1250
Query: 243 GSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNP 302
GS+P TPL+ + L + G SD YRRLVGRLLYL TRP++S++ L+QFM NP
Sbjct: 1251 GSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNP 1310
Query: 303 MTDHYKAALRVLRFLKTSPGLG 324
H+ AALRV+R+LK SPG G
Sbjct: 1311 REAHFDAALRVVRYLKGSPGQG 1332
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 333 bits (854), Expect = 4e-90
Identities = 169/322 (52%), Positives = 223/322 (68%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ALE N+TW IVDLP G AIG++WVY+ K NADGT+ RYKARLV +G NQIEG DY
Sbjct: 1001 EVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYT 1060
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PV K+TTVR +L L AA W ++Q+DV NAFLHG L+E+VYM +P G P++V
Sbjct: 1061 ETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKV 1120
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVIL 182
C+L+KSLYGLKQA R W++KLS L+ G+ Q D+S F + +LVYVDD+I+
Sbjct: 1121 CRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLII 1180
Query: 183 FGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTL 242
GN Q K+ L F +KDL LKYFLG+EV+ GI L QRKY LD+++++GTL
Sbjct: 1181 CGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGPDGIFLSQRKYALDIISDSGTL 1240
Query: 243 GSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNP 302
G++P TPL+ + L + G D +RRLVGRLLYL TRP++S++ LSQFM P
Sbjct: 1241 GARPAYTPLEQNHHLASDDGPLLQDPKPFRRLVGRLLYLLHTRPELSYSVHVLSQFMQAP 1300
Query: 303 MTDHYKAALRVLRFLKTSPGLG 324
H +AA+R++R+LK SPG G
Sbjct: 1301 REAHLEAAMRIVRYLKGSPGQG 1322
>gb|AAF69161.1| F27F5.19 [Arabidopsis thaliana] gi|25301673|pir||F96509 protein
F27F5.19 [imported] - Arabidopsis thaliana
Length = 1309
Score = 332 bits (852), Expect = 7e-90
Identities = 167/329 (50%), Positives = 224/329 (67%), Gaps = 5/329 (1%)
Query: 1 KAEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLD 60
K EI A+ + TW +V LP KAIG KWV+ IK NADG++ RYKARLVAKGY Q E LD
Sbjct: 887 KEEIGAMIQTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEESLD 946
Query: 61 YFDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVP----- 115
Y +TFSPVAKLT+VRM+L LAA W + QLD+ NAFL+G LDE++YM IP G
Sbjct: 947 YEETFSPVAKLTSVRMMLLLAAKMKWSVLQLDISNAFLNGDLDEEIYMKIPPGYADLIGE 1006
Query: 116 TMKPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLV 175
++ P+ VC+L KS+YGLKQASR+WY KLS+ L+ +G+ ++ +DH+LF+KF + G+LV
Sbjct: 1007 SLPPHAVCRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKFASGVLMGVLV 1066
Query: 176 YVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDL 235
YVDD+++ N L + F ++DL KYF G+E+A S+ GIS+CQRKY L+L
Sbjct: 1067 YVDDIMIVSNSDNAVTQFTTELKSYFKLRDLSAAKYFFGIEIARSAKGISICQRKYILEL 1126
Query: 236 LTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQL 295
L+ TG LGSKP S PLD S KL G P +D+T+Y++LV +L+YL TR I++A +
Sbjct: 1127 LSTTGFLGSKPSSIPLDTSVKLNKEDGVPLTDSTSYKKLVEKLMYLQITRHGIAYAVNTV 1186
Query: 296 SQFMSNPMTDHYKAALRVLRFLKTSPGLG 324
QF P + H +VLR+LK + G G
Sbjct: 1187 CQFSHAPTSVHLSVVHKVLRYLKGTVGQG 1215
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 329 bits (844), Expect = 6e-89
Identities = 164/325 (50%), Positives = 226/325 (69%), Gaps = 3/325 (0%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E++AL K+ TW++V LP G +G +WVY +K DG + R KARLVAKGY QI GLDY
Sbjct: 865 EMSALHKSGTWELVSLPAGKSTVGCRWVYAVKIGPDGQVDRLKARLVAKGYTQIFGLDYS 924
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQ- 121
DTF+PVAK+ +VR+ L++AA ++W LHQLD+ NAFLHG L+E+VYM P G +
Sbjct: 925 DTFAPVAKIASVRLFLSMAAVRHWPLHQLDIKNAFLHGDLEEEVYMEQPPGFVAQGESSS 984
Query: 122 -VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQ-DTLFAGLLVYVDD 179
VC+L++SLYGLKQ+ R W+ K S+ ++ G +++ +DHS+F + + L+VYVDD
Sbjct: 985 LVCRLRRSLYGLKQSPRAWFGKFSTVIQEFGMTRSGADHSVFYRHSAPSRCIYLVVYVDD 1044
Query: 180 VILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTET 239
+++ GN +K L F KDL LKYFLG+EVA S GI + QRKY LD+L ET
Sbjct: 1045 IVITGNDQDGITDLKQHLFKHFQTKDLGRLKYFLGIEVAQSRSGIVISQRKYALDILEET 1104
Query: 240 GTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFM 299
G +G +PV TP+DP+ KL+ QGEP S+ YRRLVG+L YLT TRPDISF +SQFM
Sbjct: 1105 GMMGCRPVDTPMDPNVKLLPGQGEPLSNPERYRRLVGKLNYLTVTRPDISFPVSVVSQFM 1164
Query: 300 SNPMTDHYKAALRVLRFLKTSPGLG 324
++P H++A +R+LR++K++PG G
Sbjct: 1165 TSPCDSHWEAVVRILRYIKSAPGKG 1189
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301701|pir||E84589 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1461
Score = 328 bits (842), Expect = 1e-88
Identities = 165/327 (50%), Positives = 228/327 (69%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI A+E+ +TW+I LP G KA+G KWV+ +K +ADG+L R+KAR+VAKGY Q EGLDY
Sbjct: 966 EIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYT 1025
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMK---- 118
+TFSPVAK+ TV+++L ++A++ W+L+QLD+ NAFL+G L+E +YM +P G +K
Sbjct: 1026 ETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSL 1085
Query: 119 -PNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
PN VC+L+KS+YGLKQASR+W+ K S+ L LG+ + DH+LFV+ + F LLVYV
Sbjct: 1086 PPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYV 1145
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD+++ Q + ++L +F +++L LKYFLGLEVA +S GISL QRKY L+LLT
Sbjct: 1146 DDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLT 1205
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
L KP S P+ P+ +L N G D YRRLVG+L+YLT TRPDI+FA +L Q
Sbjct: 1206 SADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQ 1265
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
F S P T H A +VL+++K + G G
Sbjct: 1266 FSSAPRTAHLAAVYKVLQYIKGTVGQG 1292
>emb|CAB77940.1| putative polyprotein [Arabidopsis thaliana] gi|4325355|gb|AAD17352.1|
contains similarity to retrovirus-related polyproteins
[Arabidopsis thaliana] gi|25301678|pir||C85077 probable
polyprotein [imported] - Arabidopsis thaliana
Length = 1366
Score = 327 bits (837), Expect = 4e-88
Identities = 171/327 (52%), Positives = 218/327 (66%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ AL T +I L G +AIG KWV++IK +DGT+ RYKARLVA GY Q EG+DY
Sbjct: 908 ELDALVSTSTREICSLHDGKRAIGCKWVFKIKYKSDGTIERYKARLVANGYTQQEGVDYI 967
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMK---- 118
DTFSP+AKLT+VR++LALAA NW + Q+DV NAFLHG +E++YM +P G K
Sbjct: 968 DTFSPIAKLTSVRLILALAAIHNWSISQMDVTNAFLHGDFEEEIYMQLPQGYTPRKGELL 1027
Query: 119 -PNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
VC+L KSLYGLKQASR+W+ K S L G+ Q+ D +LFV+ ++ F LLVYV
Sbjct: 1028 PKRPVCRLVKSLYGLKQASRQWFHKFSGVLIQNGFMQSLFDPTLFVRVREDTFLALLVYV 1087
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD++L N + VK L F +KDL +YFLGLE+A S GIS+ QRKY L+LL
Sbjct: 1088 DDIMLVSNKDSAVIEVKQILAKEFKLKDLGQKRYFLGLEIARSKEGISISQRKYALELLE 1147
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
E G LG KPV TP++ + KL G DA+ YR+L+GRL+YLT TRPDI FA +L+Q
Sbjct: 1148 EFGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVYLTVTRPDICFAVNKLNQ 1207
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
+MS P H AA R+LR+LK PG G
Sbjct: 1208 YMSAPREPHLMAARRILRYLKNDPGQG 1234
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,615,839
Number of Sequences: 2540612
Number of extensions: 21494092
Number of successful extensions: 48094
Number of sequences better than 10.0: 1595
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 44230
Number of HSP's gapped (non-prelim): 1843
length of query: 324
length of database: 863,360,394
effective HSP length: 128
effective length of query: 196
effective length of database: 538,162,058
effective search space: 105479763368
effective search space used: 105479763368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0013.3