BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0012a.8
(719 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 305 4e-81
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 191 6e-47
emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum] 187 1e-45
dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera] 186 2e-45
ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japon... 181 6e-44
gb|AAV32123.1| putative polyprotein [Oryza sativa (japonica cult... 175 4e-42
emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar... 174 9e-42
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 148 7e-34
gb|AAK52140.1| retrotransposon protein, putative, Ty3-gypsy sub-... 138 7e-31
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 132 3e-29
emb|CAE76024.1| B1292H11.10 [Oryza sativa (japonica cultivar-gro... 128 6e-28
gb|AAL75989.1| putative GAG-POL precursor -orf1 protein [Sorghum... 124 1e-26
ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cu... 108 8e-22
gb|AAP52950.1| putative retroelement [Oryza sativa (japonica cul... 104 1e-20
gb|AAK92584.1| Putative retroelement [Oryza sativa] 103 2e-20
gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cul... 102 4e-20
gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonic... 100 1e-19
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 100 3e-19
emb|CAB77873.1| putative transposon protein [Arabidopsis thalian... 99 6e-19
gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cul... 98 8e-19
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 305 bits (780), Expect = 4e-81
Identities = 182/604 (30%), Positives = 302/604 (49%), Gaps = 75/604 (12%)
Query: 123 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 182
PF++D+ + +PD + L ++ Y G +DP +HL F T+M + V C++FP++ +
Sbjct: 211 PFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLRE 270
Query: 183 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 242
+ WF+ LP SI++F KF Q++ ++ + L N++Q+ GESL+ +M R+S
Sbjct: 271 GPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFS 330
Query: 243 AASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRARASTYILDEEDDAFKR 302
+ + + P + +LPG L ++P +M E+R RA+ ++ EE + R
Sbjct: 331 KVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKFMQIEEHIDYHR 390
Query: 303 KRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLYPRRDDYEQRRPWQ 362
K E D S K R D ++ R G T + PR
Sbjct: 391 K-TYAENTDNS----KGIRPPTIPTDRERHRPNRGPRFHNYT-PLIVPR----------- 433
Query: 363 SKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPRDANPKKWCEFHRSAGHDT 422
+ D + ++ LR P P +A+ K C++HR+ GH T
Sbjct: 434 ------GKVLDEALQIELIPTLR-------------PSQTPPNADTSKRCQYHRNYGHTT 474
Query: 423 DDCWTLHREIDKLIRAGY------------------------QGNRQGQWRNSGDQNKAH 458
+ C L +I++L++AG+ G R + R++ ++
Sbjct: 475 EGCQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHYRSSRR 534
Query: 459 KREE----------ERADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGG 508
KR E E + + + KQ+ + A G P IN IAGGF GG
Sbjct: 535 KRSESPIRRTRPKSESPERRSRTKQKVRTVINTIAGPV---SLGQPPQEINYIAGGFAGG 591
Query: 509 GDTRAARKRHVRAVNSVHEVAFGFVH--PDITISMADFEGIKPHKDDPIVVQLRMNSFNV 566
G + +ARK+H+RA+ SVH P IT + DF I P +DDP+V+ + ++ F +
Sbjct: 592 GCSNSARKKHLRAIQSVHSTPTQRRPHIPPITFTDEDFTAIDPSQDDPMVITVEIDKFAI 651
Query: 567 RRVLLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDE 626
+VL+DQGSS DI+Y + F K+ + + + PY +VGF+ E+V +G+IDL T FG+D
Sbjct: 652 AKVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDY 711
Query: 627 CARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMA 686
++ + +RYL++ SYN+++GR ++NRL A++ST HLA+K+P +G + + +DQK A
Sbjct: 712 LSKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTA 771
Query: 687 RECY 690
RECY
Sbjct: 772 RECY 775
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 191 bits (486), Expect = 6e-47
Identities = 157/649 (24%), Positives = 277/649 (42%), Gaps = 63/649 (9%)
Query: 70 QQPAVTQEQWRHLMRSIGNIQQRNEHLQAQLDFYRREQRDDGSREADSVAEFRPFSEDVE 129
QQP + EQ ++ + +IQ + F + +R D+ P S++++
Sbjct: 293 QQPEMMFEQG-YIPQMANHIQYAGQIPNQAFQFQPTQPYFQPTRAIDTK---NPLSQNLQ 348
Query: 130 SVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFT 189
P N K + Y GD+DP ++L + T + D K ++ P+ + A++W+T
Sbjct: 349 MAPWPINFKLSNITKYKGDTDPNEYLRVYETAVEAAGGDDTTKAKILPTMLEGVALSWYT 408
Query: 190 TLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVE 249
T+P +I ++ F F +P +DLY ++Q GE+L+ ++ ++S ++
Sbjct: 409 TIPPMTIYSWEHMRDTFRAGFIGAYEEPKEADDLYAMKQLPGETLRSFIVKFSRVRCQIR 468
Query: 250 DEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRARASTYILDEEDDA---------F 300
+ A K LLPG L L R ++ ++ R ++ EED+
Sbjct: 469 HVDDEMLIAAAKRALLPGPLRFDLARNRPKTTKDLFERMESFARGEEDELRVQEEEAVLL 528
Query: 301 KRKRAKL--------EKGDTSPKRVKK---DRSGEDK------GDGKQQRSGEGKSVFKL 343
+K++K +KG+ + K KK D + K GDG +GK +
Sbjct: 529 GKKQSKNKQISQGEEQKGENTGKPWKKFKYDYRQDQKKQVNFIGDGSNNEREKGKHQWDN 588
Query: 344 TKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHP 403
T+ R+++ Q + + N + D + P H
Sbjct: 589 TRRG----RNNWGQSGKGRGQWWNSGRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHS 644
Query: 404 RDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEE 463
+ K+C H GH T++C + ++K + N+ + E
Sbjct: 645 TEECYSKFCHIHGPGGHSTEECRQMTHLLEKHV------------------NRYENKYEG 686
Query: 464 RADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRAVN 523
D +G+ E+ + A + P IN I GG G +++ RK +VR VN
Sbjct: 687 ARDQRGQNAIEAPQVMKIEAIEEV------PKRVINAITGGSSLGVESKRQRKAYVRQVN 740
Query: 524 SVHEVAFG----FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADI 579
V + I+ D EGI DP+VV + + V+RVL+D GSSAD+
Sbjct: 741 HVGTSYQSNPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADV 800
Query: 580 IYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQ 639
++ DAF K+ + ++ LT L GF G+QV G I L +FG+ R ++ + V+
Sbjct: 801 LFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVD 860
Query: 640 VVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARE 688
+ YN I+GR+T+N A+I ++ +K P G + ++ +Q AR+
Sbjct: 861 MPYQYNAILGRSTINIFEAIIHHNYICMKLPGLRGVI-TVRGEQLAARK 908
>emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 187 bits (474), Expect = 1e-45
Identities = 169/590 (28%), Positives = 253/590 (42%), Gaps = 112/590 (18%)
Query: 110 DGSREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDS---DPKDHLLYFNTKMVIIA 166
DG+ E D + PF+ + + IP +M+ Y+GD DP+DH+ F M I++
Sbjct: 145 DGTAEEDEMGS--PFAPHILAPEIPVSMRLSNPVVYTGDRNARDPRDHINQFLAVMDILS 202
Query: 167 ASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNI 226
D C +F ST A AWF+ LPRGSI +F + F+ QF+ N+ P TI L +
Sbjct: 203 TPDHALCWIFRSTLTGRAQAWFSQLPRGSIRSFDELRELFVRQFACNRRYPKTIGHLMTM 262
Query: 227 RQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRA 286
+ EGESL+EYM R++ + V P + G + L +PARS+ E+
Sbjct: 263 VEAEGESLREYMRRFANTVIDVRHVGPHILSEFVAQGTRSVEFANSLVGRPARSLEELMH 322
Query: 287 RASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKE 346
RA Y+L E+ + AKL + +DRS +GD R + L
Sbjct: 323 RAERYMLQED-----TRLAKL------GIQGHEDRSRNRRGDNTHGRQDMVRRY--LEPL 369
Query: 347 QLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPRDA 406
L P + + NT+V +++ G D L P+A +
Sbjct: 370 PLTPLK----------------------ISNTEVMNIMGGNQD--LRCPPQARNFEAM-R 404
Query: 407 NPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEERAD 466
+ KWC FHRS GH T++ L EI++L++ GY R + + + R E +
Sbjct: 405 HTGKWCLFHRSWGHRTENYDQLKIEIERLLKLGY-------LRRFIKRMEVYPRNERPGE 457
Query: 467 TKGKKK-QESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRAVNSV 525
+ + + +E A KG + F +HS P
Sbjct: 458 RREESRPREQAQEHCKGGE--FDRHSPP-------------------------------- 483
Query: 526 HEVAFGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAF 585
H D I A G K V RVL+D GSS D+++ F
Sbjct: 484 --------HDDPIIIQATIHGAK-----------------VSRVLIDTGSSVDVMFLPTF 518
Query: 586 DKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQVVA-SY 644
LGL + P LVGF G G I L +G R ++R+ ++ +A +Y
Sbjct: 519 LALGLKIEQIVPETTPLVGFDGSTSETLGSIPLLMSWGRGHLRRTKEIRFWIINALAKTY 578
Query: 645 NVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNNCL 694
NVI GR +L AV S HL VK+P ++G +G++K +Q AREC N +
Sbjct: 579 NVICGRPSLCLFEAVPSVLHLKVKFPANNG-IGEVKGNQARARECRLNTM 627
>dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera]
Length = 549
Score = 186 bits (473), Expect = 2e-45
Identities = 160/593 (26%), Positives = 259/593 (42%), Gaps = 97/593 (16%)
Query: 123 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 182
PF + + P +Y G SDP DH++++ M + +DA+ C++FP++ +
Sbjct: 5 PFCSHIINYEPPRGFLVPKFSTYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQG 64
Query: 183 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 242
A++WF LP S+ NFRD S F+ Q+ + I+ L NI+ Q+ ESL+E++ R+
Sbjct: 65 QALSWFHRLPPNSVGNFRDLSEAFVGQYLCSARHKQNISTLQNIKMQDNESLREFVKRFG 124
Query: 243 AASVKVEDEEPRACALAFKNGLLPG-GLNSKLTRKPARSMGEIRARASTYILDEEDDAFK 301
A ++VE A FK + PG L +KP +M ++ RA+ Y + EDD
Sbjct: 125 QAVLQVEACSMDAVLQIFKRSICPGTPFFESLAKKPPTTMDDLFRRANKYSM-LEDDVRA 183
Query: 302 RKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLYPRRDDYEQRRPW 361
+ L G S +++ D+ +R EG S K+ L P YE+ P
Sbjct: 184 ATQQVLVAGRPSGSNTERNTKPPDRPKPSDRRQ-EGPSRPKM--PPLTPLSISYEKLLP- 239
Query: 362 QSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPRDANPKKWCEFHRSAGHD 421
M++G SD P P + + C FH+ GH
Sbjct: 240 ---------------------MIQGLSDFKW---PRPIATDPSTRDRSRRCAFHKDHGHT 275
Query: 422 TDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEERADTKGKKKQESAAIATK 481
T+ C + +++LI+AG H ++ R DT G+
Sbjct: 276 TETCRSFQYLVERLIKAG------------------HLKQYLRTDTGGR----------- 306
Query: 482 GADDTFAQHSGP-----PVGT---INTIAGGFGGGG-DTRAARKRHVRA------VNSVH 526
+QH+ P PV T IN I GG D+R R++ +RA +NS+
Sbjct: 307 ----DVSQHNNPGAPRAPVATKAVINYINGGPSDEEYDSRRKRQKLLRAASIRERINSIR 362
Query: 527 EVAFG---------FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSA 577
G + P + + ++PH+ D +++ L + F+VRR+L+D GSSA
Sbjct: 363 PGLTGEGPRPIDGTIIFPPVDPTRT----LQPHR-DALILSLEIGDFDVRRILVDPGSSA 417
Query: 578 DIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLV 637
D++ +G + GL L GF G G I L G L V++ V
Sbjct: 418 DLVQASVVGHMGHSLTGLENPGRILSGFNGSSTTSLGDIILPVQAG----PVTLNVQFSV 473
Query: 638 LQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECY 690
+Q ++ +N+I+GR L+ + A+ ST H V + G++ L Q AR+CY
Sbjct: 474 VQELSPFNIILGRTWLHYMKAIPSTYHQMVIFLTHDGQI-DLYGSQLAARQCY 525
>ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|27764661|gb|AAO23086.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 971
Score = 181 bits (460), Expect = 6e-44
Identities = 155/627 (24%), Positives = 256/627 (40%), Gaps = 73/627 (11%)
Query: 63 GNSPAPEQ----------QPAVTQEQWRHLMRSIGNIQQRNEHLQAQLDFYRREQRDDGS 112
G S AP Q P++ +Q + N +N H QA + + G+
Sbjct: 288 GTSQAPSQVAMTWSQLVFDPSMAAQQASPVGARQPNAMAQN-HAQAVISPFATPYPQQGT 346
Query: 113 READSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK 172
+ P S +++ IP K L + YSG++DPK+ L + + + + K
Sbjct: 347 AGRAGGEKGLPLSGGIKNRPIPPQFKFLPVPRYSGETDPKEFLSIYESAIEAAHGDENTK 406
Query: 173 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 232
++ A +W+ LP SI ++ F++ F +P T L IRQ+ GE
Sbjct: 407 AKVIHLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGE 466
Query: 233 SLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRARASTYI 292
S++EYM R+S A +VED + A GLL G L K+ K +++ + +
Sbjct: 467 SIREYMRRFSQARCQVEDITEASVINAASAGLLEGELTRKIANKEPQTLEHLVRIIDGFA 526
Query: 293 LDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLYPRR 352
EED KR++A + D + + + + K R G+
Sbjct: 527 KSEEDS--KRRQAIQTEYDKA-----SIAAAQAQAQVKPPRQGQA--------------- 564
Query: 353 DDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPRDANPKKWC 412
P + R VM + LR DA + P + +C
Sbjct: 565 -------PMTWRKFRTDRAGKAVMAVEEVQALRKEFDAQQASNHQQPVR--KKVRKDLYC 615
Query: 413 EFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEERADTKGKKK 472
FH + H T+ C + + +GN Q G +A + + +++
Sbjct: 616 AFHGRSSHTTEQCQNIRQ----------RGNAQDTRSQQGTTIEAPREAAQEQTPPVEQR 665
Query: 473 QESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRAVNSVHEV---A 529
Q++ I I G ++ +K H+RAV+S+ A
Sbjct: 666 QDAQR------------------RVIQVITRADPPGQLSKRQKKMHIRAVHSITSAGKRA 707
Query: 530 FGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLG 589
+V+ I+ D EG+ DP+V+ + F V R+L+D GSSAD+I+ +A+ K+G
Sbjct: 708 PQYVNQLISFGPEDAEGVMFPHQDPLVISAEIAGFEVWRILVDGGSSADVIFVEAYAKMG 767
Query: 590 LTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIG 649
L LTP ++ GF GE V V G L FG E R +V + V+ + +YN I+G
Sbjct: 768 LPTQALTPAPASIRGFGGEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNAILG 827
Query: 650 RNTLNRLCAVISTAHLAVKYPLSSGKV 676
R TLN+ A+ +L +K P +G +
Sbjct: 828 RATLNKFEAISHHNYLKLKMPGPAGVI 854
>gb|AAV32123.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1242
Score = 175 bits (444), Expect = 4e-42
Identities = 140/557 (25%), Positives = 237/557 (42%), Gaps = 58/557 (10%)
Query: 123 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 182
P S V++ IP K + YSG++DPK+ L + + + + K ++
Sbjct: 248 PLSGGVKTRPIPPQFKFPPVPRYSGETDPKEFLSIYKSAIKAAHGDEITKAKVIHLALDG 307
Query: 183 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 242
A +W+ LP SI ++ F++ F +P T L IRQ+ GES++EYM R+S
Sbjct: 308 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 367
Query: 243 AASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRARASTYILDEEDDAFKR 302
A +V+D + A LL G L K+ K +++ + ++ EED KR
Sbjct: 368 QAQCQVQDITEASVINAASASLLEGELIRKIANKEPQTLEHLLRIIDGFVRGEEDS--KR 425
Query: 303 KRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLYPRRDDYEQRRPWQ 362
++A + + D++ + Q + +G+ PR+ + P
Sbjct: 426 RQAI---------QAEYDKASVAAAQAQAQPAIQGQP----------PRQG----QAPMT 462
Query: 363 SKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPRDANPKKWCEFHRSAGHDT 422
+ R VM + LR DA + P + +C FH + H T
Sbjct: 463 WRKFRTDRAGKAVMAVEEVQALRKEFDAQQASNHQQPAR--KKVRKDLYCTFHGRSSHTT 520
Query: 423 DDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEERADTKGKKKQESAAIATKG 482
+ C + + +GN Q G +A + + +++Q++ +
Sbjct: 521 EQCRNIRQ----------RGNAQDPRPQQGTTVEAPREAVQEQTPSAEQRQDTQRRVIQ- 569
Query: 483 ADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRAVNSVHEVAFG---FVHPDITI 539
+ PP ++ RK +R V+S+ G +V+ I+
Sbjct: 570 ----VITRADPPSQL-------------SKRQRKMQIRMVHSITSAGEGAPQYVNQLISF 612
Query: 540 SMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNGLTPYA 599
D EG+ DP+V+ + F VRR+L+D GSSAD+I+ +A+ K+GL LTP
Sbjct: 613 GPEDAEGVLFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAP 672
Query: 600 GTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAV 659
+L GF E V V G L FG E RV ++ + V+ + +YN I GR TLN+ A+
Sbjct: 673 TSLRGFIVEAVQVLGQAFLLIAFGSGENRRVEQILFDVVNIPYNYNAIFGRATLNKFEAI 732
Query: 660 ISTAHLAVKYPLSSGKV 676
+L +K P +G +
Sbjct: 733 SHHNYLKLKMPGPTGVI 749
>emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar-group)]
gi|50922621|ref|XP_471671.1| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
gi|38343986|emb|CAD40452.2| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
Length = 2074
Score = 174 bits (441), Expect = 9e-42
Identities = 141/570 (24%), Positives = 234/570 (40%), Gaps = 61/570 (10%)
Query: 123 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 182
P S +++ IP K + YSG++DPK+ L + + + + K ++
Sbjct: 1091 PLSGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDG 1150
Query: 183 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 242
A +W+ LP SI ++ F++ F +P T L IRQ+ GES++E M R+S
Sbjct: 1151 IARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIRENMRRFS 1210
Query: 243 AASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRARASTYILDEEDDAFKR 302
A +V+D + A GLL L K+ K +++ + EED KR
Sbjct: 1211 QARCQVQDITEASVINAASAGLLEDELTRKIVNKEPQTLEHPLRIIDGFARGEEDS--KR 1268
Query: 303 KRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLYPRRDDYEQRRPWQ 362
++A + D + + ++ Q + E + + + + + P
Sbjct: 1269 RQAIQAEYDKASVAAAQAQA--------QVQIAEPPPLSVRQSQPAIQGQPPRQGQAPMT 1320
Query: 363 SKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPRDANPKKWCEFHRSAGHDT 422
+ R VM + LR D + P + +C FH + H T
Sbjct: 1321 WRKFRTDRAGKAVMAVEEVQALRKEFDTQQASNHQQPAR--KKVRKDLYCAFHGRSSHTT 1378
Query: 423 DDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEERADTKGKKKQESAAIATKG 482
+ C + + +GN Q G +A + + T K++Q
Sbjct: 1379 EQCRNIRQ----------RGNVQDPRPQQGTTVEAPREAVQEQTTPAKQRQ--------- 1419
Query: 483 ADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRAVNSVHEVAFG---FVHPDITI 539
DT+ RK +R V+S+ G +V+ I+
Sbjct: 1420 ---------------------------DTQRRRKMQIRMVHSITSAGEGAPQYVNQLISF 1452
Query: 540 SMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNGLTPYA 599
D EG+ DP+V+ + F VRR+L+D GSSAD+IY +A+ K+GL LTP
Sbjct: 1453 GPEDAEGVLFPHQDPLVISAEIAGFEVRRILVDGGSSADVIYAEAYAKMGLPTQALTPAL 1512
Query: 600 GTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAV 659
+L GF+GE V V G L FG E R ++ + V+ + +YN I GR TLN+L A+
Sbjct: 1513 TSLRGFSGEAVQVLGQALLLIAFGSGENRREEQILFDVVNIPYNYNAIFGRATLNKLEAI 1572
Query: 660 ISTAHLAVKYPLSSGKVGKLKVDQKMAREC 689
+L +K P +G + + A +C
Sbjct: 1573 SHHNYLKLKMPGPTGVIVVKGLQPSAASKC 1602
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 148 bits (373), Expect = 7e-34
Identities = 152/585 (25%), Positives = 250/585 (41%), Gaps = 87/585 (14%)
Query: 123 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKM----VIIAASDAVKCRMFPS 178
PF+ + +V+I K + L+SY+G +DPK+ L FN + + I DA +C++F
Sbjct: 203 PFTRRITNVSIRGAQK-IKLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIE 261
Query: 179 TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYM 238
A WF+ L SI +F +S FL ++ + DL++I Q ESL+ ++
Sbjct: 262 HLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFV 321
Query: 239 ARYS--AASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMGEIRARASTYILDE 295
R+ ++ V DE A +A +N + +T ++ + RAS +I E
Sbjct: 322 DRFKLVVTNITVPDE---AAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELE 378
Query: 296 EDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLYPRRDDY 355
E+ ++ K V V K+ + D
Sbjct: 379 EEKLILARKHNSTKTPACKDAV----------------------VIKVGPD------DSN 410
Query: 356 EQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEA-PKYHPRDANPKKWCEF 414
E R+ R+ T +++T+ D D P A P Y CE+
Sbjct: 411 EPRQHLDRNPSAGRKPTSFLVSTETPDAKPWNKYIRDADSPAAGPMY----------CEY 460
Query: 415 HRSAGHDTDDCWTLHREIDKLIRAGYQ-GNRQGQWRNSGDQNKAHKREEERA------DT 467
H+S H T++C R + L+ A Y+ G + NK +R E A T
Sbjct: 461 HKSRAHSTENC----RFLQGLLMAKYKSGGITIECDRPPINNKNQRRNETTARQYLNDQT 516
Query: 468 KGKKKQESAAIATKGADDTFA--QHSGPPVGT-------INTIAGGFGGGGDTRAARKRH 518
K E I + ADD A Q +G + ++ I GG D+ + K++
Sbjct: 517 KPPTPAEQGIITS--ADDPAAKRQRNGKAIAAEPVVVRQVHVIMGGLQNCSDSVRSIKQY 574
Query: 519 VRAVNSVHEVAFGFV-----HPD----ITISMADFEGIKPHKDDPIVVQLRMNSFNVRRV 569
+ V VA+ +P+ I+ + D EG+ +DP+VV+L ++ V RV
Sbjct: 575 RKKAEMV--VAWPSSTSTTRNPNQSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRV 632
Query: 570 LLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECAR 629
L+D GSS D+I+ D + +TD + P + L GF G+ VM G I L G
Sbjct: 633 LIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVG----GL 688
Query: 630 VLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSG 674
+ V+++V+ A YNVI+G ++++ A+ ST H VK+P +G
Sbjct: 689 IAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG 733
>gb|AAK52140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
gi|34896326|ref|NP_909507.1| putative gag-pol
polyprotein [Oryza sativa]
Length = 1201
Score = 138 bits (347), Expect = 7e-31
Identities = 127/550 (23%), Positives = 221/550 (40%), Gaps = 62/550 (11%)
Query: 125 SEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTA 184
S +++ IP K + YSG++DPK+ L + + + K ++ A
Sbjct: 62 SGGIKTRPIPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDKNTKAKVIHLALDGIA 121
Query: 185 MAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAA 244
+W+ LP SI ++ F++ F +P T L IRQ+ GES++EYM R+S A
Sbjct: 122 RSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRLGESIREYMRRFSQA 181
Query: 245 SVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRARASTYILDEEDDAFKRKR 304
+V+D + A LL G L K+ K + + + + EED KR++
Sbjct: 182 RCQVQDITEASVINAASASLLEGELTRKIANKEPQMLEHLLRIIDGFARGEEDS--KRRQ 239
Query: 305 AKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLYPRRDDYEQ-RRPWQS 363
A + + D++ +QQ + + Q + Q + P
Sbjct: 240 AI---------QAEYDKAFVAAAQAQQQVQVVKPPPLVVRQPQPAIQAQPPRQGQAPMTW 290
Query: 364 KSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYHPRDANPKKWCEFHRSAGHDTD 423
+ R VM + LR DA + P + +C FH + H T+
Sbjct: 291 RKFRTDRAGKAVMAVEEVQALRKEFDAQQASNHQQPVR--KKVRKDLYCTFHGRSSHTTE 348
Query: 424 DCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKR--EEERADTKGKKKQESAAIATK 481
C + + +GN Q G +A + +E+ T+ ++ + I
Sbjct: 349 QCRNIRQ----------RGNAQDPRTQQGAVAEATREIAQEQAPPTEQRQDAQRRVIQVI 398
Query: 482 GADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRAVNSVHEVAFG---FVHPDIT 538
D PP+ ++ +K +R V+++ G +++ I
Sbjct: 399 TRVD-------PPIQL-------------SKRQKKMQLRTVHNITLAGEGTPQYLNQQIF 438
Query: 539 ISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNGLTPY 598
D EG+ DP+V+ + + F ++I+ +A+ K+GLT LTP
Sbjct: 439 FGPEDVEGVMFPHQDPLVISIEIAGF-------------EVIFAEAYAKMGLTTQALTPA 485
Query: 599 AGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCA 658
+L GF+GE V V G L FG E R +V + ++ + +YN I GR TLN+ A
Sbjct: 486 PTSLRGFSGEAVQVLGQAQLIVAFGTGENRREEQVLFDIVDIPYNYNAIFGRATLNKFEA 545
Query: 659 VISTAHLAVK 668
+ +L +K
Sbjct: 546 ISHHNYLKLK 555
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 132 bits (333), Expect = 3e-29
Identities = 115/464 (24%), Positives = 194/464 (41%), Gaps = 43/464 (9%)
Query: 216 QPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTR 275
+P T L IRQ+ GES++EYM R+S A +V+D + A GLL G + K+
Sbjct: 234 EPKTQQHLLGIRQRLGESIREYMRRFSQARCQVQDITEASVINAASAGLLEGEVTRKIAN 293
Query: 276 KPARSMGEIRARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSG 335
K +++ + + EED KR++A + D + + ++ Q +
Sbjct: 294 KEPQTLEHLLRIIDGFARGEEDS--KRRQAIQAEYDKASVAAAQAQA--------QAQVA 343
Query: 336 EGKSVFKLTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDE 395
E + + + + + P + R + VM + LR DA
Sbjct: 344 EPPPLAVRQPQPAIQGQPPRQGQAPMTWRKFRTDRASKAVMAVEEVQALRKEFDAQQASN 403
Query: 396 PEAPKYHPRDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQN 455
+ P + +C FH + H + C + + R Q R Q
Sbjct: 404 HQQPVR--KKVRKDLYCAFHGRSLHTMEQCRNIRQ------RGNVQDPRPQQGATVEAPR 455
Query: 456 KAHKREEERADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTRAAR 515
+A + + A+ + ++ + T+ + PP ++ +
Sbjct: 456 EAFQEQTPLAEQRQDAQRRVIQVITR---------ADPPSQL-------------SKRQK 493
Query: 516 KRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 572
K +R V+S+ G +++ I D EG+ DP+V+ + F VRR+L+D
Sbjct: 494 KMQIRMVHSITSAGEGAPQYLNQLIYFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVD 553
Query: 573 QGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLK 632
GSSAD+I+ +A+ K+GLT LTP +L GF GE V V G L FG E R +
Sbjct: 554 GGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGGEAVQVLGQALLLIAFGSGENRREEQ 613
Query: 633 VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKV 676
V + V+ + +YN I GR TLN + +L +K P +G +
Sbjct: 614 VLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMPGPTGVI 657
>emb|CAE76024.1| B1292H11.10 [Oryza sativa (japonica cultivar-group)]
Length = 1326
Score = 128 bits (322), Expect = 6e-28
Identities = 117/464 (25%), Positives = 195/464 (41%), Gaps = 67/464 (14%)
Query: 228 QQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSMGEIRAR 287
++ GES++EYM R+S A +V+D+ + A GLL G L K+ K +++ +
Sbjct: 426 KRPGESIREYMRRFSQARCQVQDKTEASVINAASAGLLEGELTRKIANKELQTLEHLLRI 485
Query: 288 ASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQ 347
Y EED KR++A ++ + + Q + LT Q
Sbjct: 486 IDGYARGEEDS--KRRQA-----------IQAEYDKVSVAATQAQVQAQIAEPAPLTIRQ 532
Query: 348 LYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVS----DMLRGASDANLVDEPEAPKYHP 403
P + + RP Q+ S ++ D V T ++ LR DA + +
Sbjct: 533 PQPANQE-QPPRPGQAPSTWRKFRNDRVRKTVMAVEDVQALRKEFDAQQAGSHQ--QLVR 589
Query: 404 RDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKREEE 463
+ +C +H + H T+ C + + +GN Q Q
Sbjct: 590 KKVRKDLYCAYHGRSSHTTEQCRNIRQ----------RGNAQDQ---------------- 623
Query: 464 RADTKGKKKQESAAIATKGADDTFAQHSGPPV--------GTINTIAGGFGGGGDTRAAR 515
+ Q+ AAI A AQ PP+ I I ++ +
Sbjct: 624 -------RPQQGAAIE---APREAAQEQAPPIEQRQDIQRRVIQVITRADPPVQQSKRQK 673
Query: 516 KRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 572
K +R V ++ G +++ I+ D EG+ DP+V+ ++ F VRR+L+D
Sbjct: 674 KMQLRTVYNIIAAGKGAPRYLNQQISFGPEDVEGVLFPHQDPLVISAKVAGFEVRRILVD 733
Query: 573 QGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLK 632
+GSSAD+I+ +A+ K+GL LT +L GF G+ V V G + L FG E R +
Sbjct: 734 RGSSADVIFAEAYAKMGLPTLALTEAPASLRGFGGKAVQVLGQVQLVIAFGTGENRREEQ 793
Query: 633 VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKV 676
+ + V+ + +YN I GR TLN A+ +L +K P +G +
Sbjct: 794 ILFDVVNIPYNYNAIFGRATLNMFEAISHHNYLKLKMPGPTGVI 837
>gb|AAL75989.1| putative GAG-POL precursor -orf1 protein [Sorghum bicolor]
Length = 841
Score = 124 bits (310), Expect = 1e-26
Identities = 151/662 (22%), Positives = 246/662 (36%), Gaps = 115/662 (17%)
Query: 50 PSPSQVGSREHSPGNSPAPEQQPAVTQEQWRHLMRSIGNIQQRNEHLQAQLDFYRREQRD 109
P PS+ R SP N ++ ++ H ++ G Q+ N+H + + ++ RD
Sbjct: 172 PQPSR-HHRSRSPDNHRKDSRRDDGGRDAGGHREQNRGRGQEVNQHRDLRYNIPPKDARD 230
Query: 110 DGSREADSVAE-----------------FRPFSEDVESVAIPDNMKTLVLDSYSGDSDPK 152
+R A A R FS + V P N K L Y G +P+
Sbjct: 231 RINRRATERAVHENVRRIEYDATHGPPGLRQFSSHLRQVVWPRNFKLEKLKKYDGKENPE 290
Query: 153 DHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSA 212
+ + + + A + V FP +F S + + F+ F A
Sbjct: 291 NWITLYEIAVRSAAGDEHVMANYFPDSFDS----------------WEELRQAFIDNFIA 334
Query: 213 NKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGL-LPGGLNS 271
QP DL IR ++ E L++Y+ R+S +K+ AF GL L +
Sbjct: 335 TCEQPGNKYDLERIRDRKNEPLRDYIRRFSDMRLKIPKISHDEAISAFIKGLCFHEALRN 394
Query: 272 KLTRKPARSMGEIRARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKK----DRSGEDKG 327
KL RK +M E+ A A Y + DDA K R D P+R D +
Sbjct: 395 KLLRKSPTTMAELLATAKNYA--DADDAEKLIRDDARGPDQPPRRDDSRGRFDNRNHRRP 452
Query: 328 DGKQQRSGEGKSVFKLTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGA 387
D + QR G ++ RDD+ +RP
Sbjct: 453 DNRDQREGW---------DRRRDNRDDFRGKRPCDHDH---------------------- 481
Query: 388 SDANLVDEPEAPKYHPRDANP--KKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQ 445
+ N V P + + D N K C+ H + H ++C L + RA + +
Sbjct: 482 -EVNTVKRPNGRRDYQEDYNKTLKGPCQPHPKSNHTMEECRVLKNIYTR--RAAQDDSAK 538
Query: 446 GQWRNSGDQNKAHKREEERADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGF 505
+ G H+ E+E D + + S P +++I F
Sbjct: 539 KNGKRDGHD---HEDEDEDQDRDPRHQYVS------------------PTDVVHSI---F 574
Query: 506 GGGGDTRAARKRHV--RAVNSVHEVAFGFV---------HPDITISMADFEGIKPHKDD- 553
GG + R+R + RA ++ G + H +I+ S D P
Sbjct: 575 GGKVSIESKRERKLLKRACLNIDSTD-GLIADPKFPPWSHREISFSRKDQWAAIPEPGRF 633
Query: 554 PIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVG-FAGEQVMV 612
P+++ +NS RVL+D GSS DI++ ++ L ++ L PY G G+ +
Sbjct: 634 PLILDPCINSIRFERVLMDGGSSIDILFRNSLPALKISPTQLKPYDAQFWGVLPGQSSVP 693
Query: 613 RGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLS 672
G I L FG + V ++V +Y+ I+GR +L + AV ++L +K P
Sbjct: 694 LGQITLPVQFGTPDHFWTEFVNFVVADFDGTYHAILGRPSLTKFMAVPHYSYLVLKMPTE 753
Query: 673 SG 674
G
Sbjct: 754 KG 755
>ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46981243|gb|AAT07561.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1459
Score = 108 bits (269), Expect = 8e-22
Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 30/279 (10%)
Query: 402 HPRDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGDQNKAHKRE 461
H + K+ + H H T++C + ++K +R Y G +G G QN
Sbjct: 141 HSTEECYSKFYKVHGPCNHATEECRQMASLVEKHVRQ-YDGKYEGV---QGGQNML---- 192
Query: 462 EERADTKGKKKQESAAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTRAARKRHVRA 521
+G+K + AI P IN I GG G +++ RK +VR
Sbjct: 193 ------EGQKVMKIEAIEEA------------PKRVINAITGGSSLGVESKRQRKAYVRQ 234
Query: 522 VNSV----HEVAFGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSA 577
++ V V + + I+ D EGI DP+V+ + + V+RVL+D GSSA
Sbjct: 235 IHHVGTSYQSVPPAYSNTVISFGPEDAEGILFPHQDPLVISVEIAQCEVQRVLVDGGSSA 294
Query: 578 DIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLV 637
D+++ DAF K+ + ++ LT L GF G QV G I L +FG E R +V + V
Sbjct: 295 DVLFYDAFKKMQIPEDRLTHAGIPLQGFGGHQVHTIGKISLQVVFGGGENKRREEVVFDV 354
Query: 638 LQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKV 676
+ + YN ++GR+T+N A+I ++ +K P G +
Sbjct: 355 VDMPYQYNAVLGRSTINIFEAIIHHNYICMKLPGPKGVI 393
>gb|AAP52950.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532722|ref|NP_920663.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881697|gb|AAM01098.1| Putative retroelement [Oryza
sativa]
Length = 1367
Score = 104 bits (259), Expect = 1e-20
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 3/192 (1%)
Query: 511 TRAARKRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVR 567
++ +K +R V+++ G +++ I+ + D EG+ DP+V+ + F VR
Sbjct: 469 SKRQKKMQLRTVHNITLAGEGAPQYLNQQISFGLGDAEGVMFPHQDPLVISAEIAGFEVR 528
Query: 568 RVLLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDEC 627
R+L+D SSAD+I+ +A+ K+GLT +TP L GF GE V V G L FG E
Sbjct: 529 RILVDGESSADVIFAEAYAKMGLTTQAITPAPALLRGFGGEAVQVLGQAQLMVAFGTGEN 588
Query: 628 ARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMAR 687
R +V + V+ + +YN I GR TLN+ A+ +L +K P G + + + M
Sbjct: 589 RREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPIGVIMLVSLGGDMGE 648
Query: 688 ECYNNCLNLYGK 699
E N L + K
Sbjct: 649 EEAENILEVLKK 660
>gb|AAK92584.1| Putative retroelement [Oryza sativa]
Length = 1705
Score = 103 bits (258), Expect = 2e-20
Identities = 59/175 (33%), Positives = 95/175 (53%), Gaps = 6/175 (3%)
Query: 511 TRAARKRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVR 567
++ +K +R V+++ G +++ I+ + D EG+ DP+V+ + F VR
Sbjct: 611 SKRQKKMQLRTVHNITLAGEGAPQYLNQQISFGLGDAEGVMFPHQDPLVISAEIAGFEVR 670
Query: 568 RVLLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDEC 627
R+L+D SSAD+I+ +A+ K+GLT +TP L GF GE V V G L FG E
Sbjct: 671 RILVDGESSADVIFAEAYAKMGLTTQAITPAPALLRGFGGEAVQVLGQAQLMVAFGTGEN 730
Query: 628 ARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVD 682
R +V + V+ + +YN I GR TLN+ A+ +L +K P G +G + +D
Sbjct: 731 RREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP---GPIGVIMID 782
Score = 47.8 bits (112), Expect = 0.001
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 172 KCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEG 231
K ++ A +W+ LP SI ++ F++ F + T L IRQ+ G
Sbjct: 378 KAKVIHLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEETKTQQHLLGIRQRPG 437
Query: 232 ESLKEYMARYSAASVKVEDEEPRA 255
ES++EYM R+S A + + + +A
Sbjct: 438 ESIREYMRRFSQARGEEDSKRRQA 461
>gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532500|ref|NP_920552.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13992677|gb|AAK51571.1| Putative retroelement [Oryza
sativa]
Length = 1497
Score = 102 bits (254), Expect = 4e-20
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 512 RAARKRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRR 568
R +K +R V+++ G +V+ I+ D EG+ DP+V+ + F VRR
Sbjct: 397 RQRKKMQIRMVHNITSAGEGAPQYVNQLISFGPEDAEGVLFPHQDPLVISAEIAGFEVRR 456
Query: 569 VLLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECA 628
+L+D+GSSADII+ +A+ K+GL LTP +L GF GE V V G L FG +
Sbjct: 457 ILVDEGSSADIIFAEAYAKMGLPTQALTPAPASLRGFGGEPVQVLGQALLLIAFGSGDNR 516
Query: 629 RVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKV 676
R ++ + V+ + +YN I GR TLN+ A+ +L +K P +G +
Sbjct: 517 REEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTGVI 564
>gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1631
Score = 100 bits (250), Expect = 1e-19
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 3/169 (1%)
Query: 511 TRAARKRHVRAVNSVHEVAFG---FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVR 567
++ +K +R V+S+ G +++ I+ D EG+ DP+V+ + F VR
Sbjct: 505 SKRQKKMQIRMVHSITSAGKGAPQYLNQLISFGPEDAEGVMFPHQDPLVISAEIAGFEVR 564
Query: 568 RVLLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDEC 627
R+L+D GSSAD+I+ +A+ K+GL LTP +L GF GE V V G L FG E
Sbjct: 565 RILVDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVRVLGQALLLIAFGSGEN 624
Query: 628 ARVLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKV 676
R ++ + V+ + +YN I GR TLN+ A+ +L +K P +G +
Sbjct: 625 RREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPAGVI 673
Score = 86.7 bits (213), Expect = 2e-15
Identities = 46/159 (28%), Positives = 79/159 (48%)
Query: 123 PFSEDVESVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 182
P S +++ IP K L++ YSG++DPK+ L + + + + +K ++
Sbjct: 335 PLSGGIKTRPIPPQFKFLLVPRYSGETDPKEFLSIYESAIEAAHGDENIKAKVIHLALDG 394
Query: 183 TAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS 242
A +W+ L SI ++ F++ F +P T L IRQ+ GES++EYM R+S
Sbjct: 395 IARSWYFNLLANSIYSWEQLHDSFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFS 454
Query: 243 AASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPARSM 281
A +V+D + A GLL G L K+ K +++
Sbjct: 455 QARCQVQDITEASVINAASAGLLEGELTRKIANKEPQTL 493
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1587
Score = 99.8 bits (247), Expect = 3e-19
Identities = 58/160 (36%), Positives = 88/160 (54%)
Query: 517 RHVRAVNSVHEVAFGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSS 576
R V ++ S+ E A +++ I+ D EG+ DP+V+ + F VRR+L+D GSS
Sbjct: 563 RMVHSITSMGEGAPQYLNQLISFGPEDAEGVMFSHQDPLVISAEIAGFEVRRILVDGGSS 622
Query: 577 ADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYL 636
AD+I+ +A+ K+ L LTP +L GF GE V V G L FG E R ++ +
Sbjct: 623 ADVIFAEAYAKMELPTQTLTPAPASLRGFGGEAVQVLGQALLLIAFGSGENGREEQILFD 682
Query: 637 VLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKV 676
V+ + +YN I GR TLN+ AV +L +K P +G +
Sbjct: 683 VVDIPYNYNAIFGRATLNKFEAVSHHNYLKLKMPSPAGVI 722
Score = 56.2 bits (134), Expect = 4e-06
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 195 SISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPR 254
SI ++ F++ F +P T L IRQ+ GES++EYM R+S A +V+D
Sbjct: 354 SIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEA 413
Query: 255 ACALAFKNGLLPGGLNSKLTRKPARSMGEIRARASTYILDEEDDAFKRKRA 305
+ A GLL G L K+ K +++ + + EED KR++A
Sbjct: 414 SVINAALAGLLEGELTRKIANKEPQTLEHLLRIIDGFARGEEDS--KRRQA 462
>emb|CAB77873.1| putative transposon protein [Arabidopsis thaliana]
gi|3377834|gb|AAC28207.1| T24H24.13 gene product
[Arabidopsis thaliana] gi|7487390|pir||T01469
hypothetical protein T24H24.13 - Arabidopsis thaliana
Length = 681
Score = 98.6 bits (244), Expect = 6e-19
Identities = 81/302 (26%), Positives = 141/302 (45%), Gaps = 36/302 (11%)
Query: 394 DEPEAPKYHPRDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRNSGD 453
+E EA + + + K+C++H+ G+ T++C R + KLI AG G + +
Sbjct: 368 EENEAAENESPELDLGKYCKYHKKRGYSTEEC----RAVKKLIAAG--GKTKKGSNPKVE 421
Query: 454 QNKAHKREEERADTKGKKKQESAAIATKGADD----------------TFAQHSGPPVGT 497
++EEE+ + K+++ I T + +H P
Sbjct: 422 TPPPDEQEEEQTPKQKKRERTPEGITTPPPAPHKKNMRFPLRLLKFCRSATEHLSPK--R 479
Query: 498 INTIAGGFGGGGDTRAARKRHVRAVNSVHEVAFGFVHPDITISMADFEGI---KPHKDDP 554
I+ I GG D+ + K H R +S + + P+ I+ + E KPH DD
Sbjct: 480 IDFIMGGSQLCNDSINSIKTHQRKADSYTKGKSPMMGPNHQITFWESETTDLNKPH-DDA 538
Query: 555 IVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRG 614
+V+++ + ++ + +++D GSS D+++ DAF ++G D+ L L GFAG+ G
Sbjct: 539 LVIRIDVGNYELSHIMIDTGSSVDVLFYDAFKRMGHLDSELQGRKTPLTGFAGDTTFSLG 598
Query: 615 YIDLDTIFGEDECARVLK--VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLS 672
I L TI AR ++ +LV+ A +N I+GR L+ + AV ST H +K+P
Sbjct: 599 TIQLPTI------ARGVRRLTSFLVVNKKAPFNAILGRPWLHAMKAVPSTYHQCIKFPSD 652
Query: 673 SG 674
G
Sbjct: 653 KG 654
>gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37534078|ref|NP_921341.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881722|gb|AAM01123.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1292
Score = 98.2 bits (243), Expect = 8e-19
Identities = 57/154 (37%), Positives = 85/154 (55%)
Query: 517 RHVRAVNSVHEVAFGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSS 576
R V ++ S E A +++ I+ D EG+ DP+V+ + F VRR+L+D GSS
Sbjct: 325 RMVHSITSAGEGAPQYLNQLISFGPEDAEGVIFPHQDPLVISAEIAGFEVRRILVDGGSS 384
Query: 577 ADIIYGDAFDKLGLTDNGLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYL 636
AD+I+ +A+ K+GL LTP +L GF GE V V G L FG E R ++ +
Sbjct: 385 ADVIFAEAYAKMGLPTQALTPAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRREEQILFD 444
Query: 637 VLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYP 670
V+ + +YN I GR TLN+ A+ +L +K P
Sbjct: 445 VVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP 478
Score = 89.7 bits (221), Expect = 3e-16
Identities = 68/307 (22%), Positives = 129/307 (41%), Gaps = 26/307 (8%)
Query: 95 HLQAQLDFYRREQRDDGSREADSVAEFRPFSEDVESVAIPDNMKTLVLDSYSGDSDPKDH 154
H+QA + + G+ + P S +++ IP K + YSG++DPK+
Sbjct: 21 HVQAAISPFATPYPQQGAVNRAGGEKGLPLSGGIKTRPIPPQFKFPPVPRYSGETDPKEF 80
Query: 155 LLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANK 214
L + + + + K ++ A +W+ LP SI ++ F++ F
Sbjct: 81 LSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLPDNSIYSWEQLRDVFVLNFRGTY 140
Query: 215 NQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLT 274
+P T L IRQ+ GES++EYM R+S A +V+D + A GLL G L K+
Sbjct: 141 EEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEASVINAASAGLLEGELTRKIA 200
Query: 275 RKPARSMGEIRARASTYILDEEDDAFK---------------RKRAKLEKGDTSPKRVKK 319
K ++ + + EED + + +A+++ + P V++
Sbjct: 201 NKEPLTLEHLLCIIDGFARGEEDSKRRQAIQAEYDKASITAAQAQAQVQVAEPPPLSVRQ 260
Query: 320 DRSGEDKGDGKQQRS----------GEGKSVFKLTKEQLYPRRDDYEQRRPWQSKSHRQR 369
+ +Q ++ GK+V + + Q + D +Q Q +H+++
Sbjct: 261 SQPAIQGQPPRQSQAPITWRKFRTDRAGKAVMAVEEVQALRKEFDAQQASNHQQPAHKKK 320
Query: 370 E-ETDMV 375
+ +T MV
Sbjct: 321 KMQTRMV 327
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,292,808,390
Number of Sequences: 2540612
Number of extensions: 60805592
Number of successful extensions: 500051
Number of sequences better than 10.0: 2258
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 1459
Number of HSP's that attempted gapping in prelim test: 468240
Number of HSP's gapped (non-prelim): 14467
length of query: 719
length of database: 863,360,394
effective HSP length: 135
effective length of query: 584
effective length of database: 520,377,774
effective search space: 303900620016
effective search space used: 303900620016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0012a.8