BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0011b.6
(189 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 59 5e-08
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 55 1e-06
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 54 3e-06
dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis ... 53 4e-06
emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|49720... 51 1e-05
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 50 3e-05
gb|AAC27408.1| putative non-LTR retroelement reverse transcripta... 49 7e-05
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 48 1e-04
gb|AAP44645.1| putative reverse transcriptase [Oryza sativa (jap... 48 2e-04
gb|AAU89136.1| F-box domain containing protein [Oryza sativa (ja... 48 2e-04
gb|AAC13594.1| contains similarity to reverse transcriptase-like... 47 2e-04
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 47 3e-04
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 47 3e-04
gb|AAF23283.1| putative non-LTR reverse transcriptase [Arabidops... 47 3e-04
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 47 4e-04
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 47 4e-04
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 47 4e-04
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 45 0.001
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 45 0.001
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 44 0.002
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 59.3 bits (142), Expect = 5e-08
Identities = 43/169 (25%), Positives = 71/169 (41%), Gaps = 10/169 (5%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWF-----ASSLSLRVNLFATVEDFV 59
L R + GC C E+ET+ HL + P VW A + ++F+ + +
Sbjct: 1025 LRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVI 1084
Query: 60 SEMVREGMPEVLAAVQT-MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHESP 118
G+P + V +L+ IW+++N +FQ ++A A + W+ E
Sbjct: 1085 QNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKS 1144
Query: 119 HAGRELPS--RWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVL 164
G PS +W P +K N+ A +AG+ V RD +VL
Sbjct: 1145 SGGVS-PSEHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVL 1192
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 54.7 bits (130), Expect = 1e-06
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 2 RSALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLS-LRVNLFA-TVEDFV 59
RS L+ R +++DP C C E ET+ H+ P +W S+ L + F+ E+ +
Sbjct: 1386 RSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENI 1445
Query: 60 SEMVREGMPEVLAAVQT-----MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR- 113
S ++ L Q +++ +W+++N LVF + S V+ A + W++
Sbjct: 1446 SFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQS 1505
Query: 114 ------VHESPHAGRELPSRWKRPATRAVKVNLDA 142
+ RWK+P VK N DA
Sbjct: 1506 VNRREDASVLTRSSHRANVRWKKPVFPLVKCNFDA 1540
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 53.5 bits (127), Expect = 3e-06
Identities = 48/195 (24%), Positives = 85/195 (42%), Gaps = 17/195 (8%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFA----SSLSLRVNLFATVEDFVS 60
L +R + GC C N +T+EH+FL P +W ++ L N F+T+ ++
Sbjct: 1093 LRRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIF 1151
Query: 61 EMVREGMPEVLAAVQTMLYAIWESQ------NGLVF-QRMSFDMGWVLAWAVALGSGWVR 113
+ ++ G + + IWE++ NG V QR+ +L++ + +
Sbjct: 1152 DFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIK---ILSYVDMILKHNTK 1208
Query: 114 VHESPHAGR-ELPSRWKRPATRAVKVNLDARVHDGSMA-GLVLVARDENEEVLEATSSYP 171
+ G + RW+ P +N DA + S G+ + RD + L A S
Sbjct: 1209 TVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMI 1268
Query: 172 WPILSPLLAEALSLR 186
++ P LAEAL++R
Sbjct: 1269 SDVVLPELAEALAIR 1283
>dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis thaliana]
gi|15230827|ref|NP_189164.1| hypothetical protein
[Arabidopsis thaliana]
Length = 343
Score = 53.1 bits (126), Expect = 4e-06
Identities = 47/175 (26%), Positives = 74/175 (41%), Gaps = 19/175 (10%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL------SLRVNLFATVEDF 58
L +R + P C C E ET +HLF + VW AS + + + + +E
Sbjct: 45 LKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELL 104
Query: 59 VSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW------- 111
+S + P++ +L+ +W+S+N LVFQ+ S L A W
Sbjct: 105 LSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYV 164
Query: 112 ----VRVHESPHAGRELP-SRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDEN 160
+VH S H + ++W+RP + +K N D A H A + RDEN
Sbjct: 165 QSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDEN 219
>emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|4972055|emb|CAB43923.1|
putative protein [Arabidopsis thaliana]
gi|67633766|gb|AAY78807.1| putative reverse
transcriptase/RNA-dependent DNA polymerase [Arabidopsis
thaliana] gi|15233451|ref|NP_194638.1| reverse
transcriptase, putative / RNA-dependent DNA polymerase,
putative [Arabidopsis thaliana] gi|7485741|pir||T08964
hypothetical protein F19B15.120 - Arabidopsis thaliana
Length = 575
Score = 51.2 bits (121), Expect = 1e-05
Identities = 55/206 (26%), Positives = 85/206 (40%), Gaps = 26/206 (12%)
Query: 4 ALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL----------SLRVNLFA 53
AL R + + C C + ET+ HL + W SS+ S+ VNL+
Sbjct: 283 ALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYW 342
Query: 54 TVEDFVSEMVREGMPEVLAAVQT---MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSG 110
+ G P+ A Q +L+ +W+++N LVF+ F+ VL A
Sbjct: 343 VFN------LGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEE 396
Query: 111 W-VRVH-----ESPHAGRELPSRWKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEV 163
W +R P R RW+ P + VK N DA + D G+ V R+E EV
Sbjct: 397 WRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEV 456
Query: 164 LEATSSYPWPILSPLLAEALSLRWSM 189
+ + S L AE ++RW++
Sbjct: 457 KWMGARALPKLKSVLEAELEAMRWAV 482
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 50.1 bits (118), Expect = 3e-05
Identities = 48/185 (25%), Positives = 77/185 (40%), Gaps = 34/185 (18%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL------RVNLFATVE-- 56
+I+R + +DP C ICG+E E+ H+ M VW S + ++FA ++
Sbjct: 849 IIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIFANIQFL 908
Query: 57 ------DFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSF--------DMGWVLA 102
V ++V+ P V L+ +W+++N L F ++F L
Sbjct: 909 FELKKMILVPDLVKRSWPWV-------LWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLE 961
Query: 103 WAVALGSGWVRVHESPHAGRELP--SRWKRPATRAVKVNL-DARVHDGSMAGLVLVARDE 159
W A +RV ES R +P W+ P VK N+ A + G V RDE
Sbjct: 962 WFQA--QSQIRVSESEEGQRVIPFTHSWEPPPEGWVKCNIGSAWSGKKKVCGGAWVLRDE 1019
Query: 160 NEEVL 164
+ V+
Sbjct: 1020 HGSVI 1024
>gb|AAC27408.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7485464|pir||T02320 hypothetical protein
At2g34320 [imported] - Arabidopsis thaliana
gi|15226275|ref|NP_180979.1| hypothetical protein
[Arabidopsis thaliana]
Length = 292
Score = 48.9 bits (115), Expect = 7e-05
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 20/194 (10%)
Query: 13 DPGCAICGNEVETMEHLFLEFPMFLGVWFASSL----------SLRVNLFATVEDFVSEM 62
+ C C + ET+ HL + VW S + SL NL+ + E+
Sbjct: 9 EASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLN---LEV 65
Query: 63 VREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE------ 116
+ ++ V +L+ +W+S+N L+F+ +D VL A+ W E
Sbjct: 66 EIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKAS 125
Query: 117 SPHAGRELPSRWKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEVLEATSSYPWPIL 175
P R L +WK P + VK N DA + G+ + R+E+ VL +
Sbjct: 126 GPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTK 185
Query: 176 SPLLAEALSLRWSM 189
+ L AE +LRW++
Sbjct: 186 NVLEAELEALRWAV 199
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 48.1 bits (113), Expect = 1e-04
Identities = 38/153 (24%), Positives = 62/153 (39%), Gaps = 16/153 (10%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVN--LFATVEDFVSEM 62
L R + +DPGC C E E++ H P W S L + L +ED +S +
Sbjct: 694 LTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNI 753
Query: 63 VREGMPEVLAAVQT-----MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
+ + Q +L+ IW+++N +VF + + A A + W+ ++
Sbjct: 754 LLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQT 813
Query: 118 PHAGRELPSR--------WKRPATRAVKVNLDA 142
R LP R W +P +K N DA
Sbjct: 814 -QGPRRLPKRTTAAGNTTWVKPQMPYIKCNFDA 845
>gb|AAP44645.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50917607|ref|XP_469200.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 404
Score = 47.8 bits (112), Expect = 2e-04
Identities = 48/195 (24%), Positives = 81/195 (40%), Gaps = 17/195 (8%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNL----FATVEDFVS 60
L +R + GC C N +T+EH+FL P +W V L F+T+ ++
Sbjct: 115 LPRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKRKCAVKLGRNGFSTMRHWIF 173
Query: 61 EMVREGMPEVLAAVQTMLYAIWESQN------GLVF-QRMSFDMGWVLAWA-VALGSGWV 112
+ ++ G + + IWE++N G V QR+ +L++ + L
Sbjct: 174 DFLKRGSSHTNTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIK---ILSYVDMILKHNTK 230
Query: 113 RVHESPHAGRELPSRWKRPATRAVKVNLDARVHDGSMA-GLVLVARDENEEVLEATSSYP 171
V + RW+ +N DA + S G+ + RD + L A S
Sbjct: 231 TVDGQRGENTQAIPRWQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMI 290
Query: 172 WPILSPLLAEALSLR 186
++ P LAEAL++R
Sbjct: 291 SDVVLPELAEALAIR 305
>gb|AAU89136.1| F-box domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 855
Score = 47.8 bits (112), Expect = 2e-04
Identities = 48/195 (24%), Positives = 81/195 (40%), Gaps = 17/195 (8%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNL----FATVEDFVS 60
L +R + GC C N +T+EH+FL P +W V L F+T+ ++
Sbjct: 566 LPRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKRKCAVKLGRNGFSTMRHWIF 624
Query: 61 EMVREGMPEVLAAVQTMLYAIWESQN------GLVF-QRMSFDMGWVLAWA-VALGSGWV 112
+ ++ G + + IWE++N G V QR+ +L++ + L
Sbjct: 625 DFLKRGSSHTNTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIK---ILSYVDMILKHNTK 681
Query: 113 RVHESPHAGRELPSRWKRPATRAVKVNLDARVHDGSMA-GLVLVARDENEEVLEATSSYP 171
V + RW+ +N DA + S G+ + RD + L A S
Sbjct: 682 TVDGQRGENTQAIPRWQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMI 741
Query: 172 WPILSPLLAEALSLR 186
++ P LAEAL++R
Sbjct: 742 SDVVLPELAEALAIR 756
>gb|AAC13594.1| contains similarity to reverse transcriptase-like proteins
[Arabidopsis thaliana] gi|7488297|pir||T01193 reverse
transcriptase homolog F21E10.8 - Arabidopsis thaliana
Length = 301
Score = 47.4 bits (111), Expect = 2e-04
Identities = 49/198 (24%), Positives = 80/198 (39%), Gaps = 16/198 (8%)
Query: 3 SALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFAT--VEDFVS 60
S L+ R + + P C+ C E E++ H+ P + +W S+L L T VE+ +S
Sbjct: 14 SRLVTRGMNISPYCSRCLTEEESICHVLFTCPYAMRIWRLSNLPQLTGLSITHDVEENIS 73
Query: 61 EM----VREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE 116
+ + +++ IW++ N LV V+ VA W +
Sbjct: 74 LLDAYYNNNHTTQQKVIHFWLIWKIWKAHNNLVLNNYRECPSMVIQQTVAEVYDWTTIIN 133
Query: 117 SPHAGRELPSR--------WKRPATRAVKVNLDARVHDGSMAGL-VLVARDENEEVLEAT 167
A LP+R W + A VK N DA + + G+ + RD E
Sbjct: 134 GMQA-MSLPARIQTKGKTSWMKHAAPFVKCNFDAGFQENNEQGMGGWILRDHYGEAKAWG 192
Query: 168 SSYPWPILSPLLAEALSL 185
SS +++PL AE +L
Sbjct: 193 SSILDHVITPLDAETKAL 210
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 47.0 bits (110), Expect = 3e-04
Identities = 37/155 (23%), Positives = 60/155 (37%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLF---------ATV 55
L R + +DP C C E E++ H P W S SL N + +
Sbjct: 1455 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNI 1514
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 1515 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 1572
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 1573 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1606
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 47.0 bits (110), Expect = 3e-04
Identities = 37/155 (23%), Positives = 61/155 (38%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNL---------FATV 55
L R + +DP C C E E++ H P W+ S SL N + +
Sbjct: 1229 LTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNI 1288
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 1289 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 1346
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 1347 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1380
>gb|AAF23283.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
gi|15232695|ref|NP_187562.1| hypothetical protein
[Arabidopsis thaliana]
Length = 484
Score = 47.0 bits (110), Expect = 3e-04
Identities = 37/155 (23%), Positives = 60/155 (37%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLF---------ATV 55
L R + +DP C C E E++ H P W S SL N + +
Sbjct: 189 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNI 248
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 249 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 306
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 307 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 340
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 46.6 bits (109), Expect = 4e-04
Identities = 42/191 (21%), Positives = 77/191 (39%), Gaps = 9/191 (4%)
Query: 8 RKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLS-----LRVNLFATVEDFVSEM 62
R + D GC +C E ET+ H+ E P+ VW + LS +++ + +
Sbjct: 1054 RGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLT 1113
Query: 63 VREGMPEVLAAVQT-MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW--VRVHESPH 119
+ +P L V +L+ +W+++N L+F+ ++ A W + H
Sbjct: 1114 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQND 1173
Query: 120 AGRELPSRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVLEATSSYPWPILSPL 178
++W P +K N+ A +G V RD +VL + + SP
Sbjct: 1174 EKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPY 1233
Query: 179 LAEALSLRWSM 189
A+ S W++
Sbjct: 1234 SAKIRSWEWAL 1244
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 46.6 bits (109), Expect = 4e-04
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL------RVNLFATVEDF 58
+I+R + +DP C +CG E E++ H+ + VW S + ++FA ++ +
Sbjct: 1075 IIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGFQNSSIFANIQ-Y 1133
Query: 59 VSEMVREGM--PEVLAAVQTMLYAIWESQNGLVFQRMSFD------------MGWVLAWA 104
+ E+ +G+ ++ + +L+ +W++++ L F+ F W LA A
Sbjct: 1134 LLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEWFLAQA 1193
Query: 105 -VALGSGWVRVHESPHAGRELPSRWKRPATRAVKVNLDARVHDGS--MAGLVLVARDENE 161
VA V +P PS W+ P VK N+ V G + G V RD++
Sbjct: 1194 LVASVDAGETVCSAP-----CPSSWEPPPLGWVKCNISG-VWSGKKRVCGGAWVLRDDHG 1247
Query: 162 EVL 164
+VL
Sbjct: 1248 KVL 1250
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 46.6 bits (109), Expect = 4e-04
Identities = 42/191 (21%), Positives = 77/191 (39%), Gaps = 9/191 (4%)
Query: 8 RKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLS-----LRVNLFATVEDFVSEM 62
R + D GC +C E ET+ H+ E P+ VW + LS +++ + +
Sbjct: 1075 RGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLT 1134
Query: 63 VREGMPEVLAAVQT-MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW--VRVHESPH 119
+ +P L V +L+ +W+++N L+F+ ++ A W + H
Sbjct: 1135 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQND 1194
Query: 120 AGRELPSRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVLEATSSYPWPILSPL 178
++W P +K N+ A +G V RD +VL + + SP
Sbjct: 1195 EKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPY 1254
Query: 179 LAEALSLRWSM 189
A+ S W++
Sbjct: 1255 SAKIRSWEWAL 1265
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 45.1 bits (105), Expect = 0.001
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 3 SALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL------SLRVNLFATVE 56
S L R + + C C + ET+ HL + P W S L +LF +
Sbjct: 1079 SNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMH 1138
Query: 57 DFVSEMVREGMPEVL---AAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR 113
+S V + PE A + +L+ +W+++N LVF+ F V+ A W
Sbjct: 1139 HVLS--VHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNN 1196
Query: 114 VHES----PHAGRELPSRWKRPATRAVKVNLDA---------------RVHDGSMAGLVL 154
E + R+ +W+ P+ VK N D R H G + L L
Sbjct: 1197 RKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGL 1256
Query: 155 VARDENEEVLEA-TSSYPWPILS 176
A + VLE + W +LS
Sbjct: 1257 RALPSQQSVLETEVEALRWAVLS 1279
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411644|pir||C84530 hypothetical protein
At2g15540 [imported] - Arabidopsis thaliana
Length = 1225
Score = 44.7 bits (104), Expect = 0.001
Identities = 50/196 (25%), Positives = 83/196 (41%), Gaps = 13/196 (6%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL------RVNLFATVEDF 58
L R + + C CG E E++ HL P +W S + R +LF +
Sbjct: 953 LFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFL 1012
Query: 59 VSEMVREGMPE-VLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
+S + E ++ +L+ IW+S+N +F+ + +L +A+ + W + +
Sbjct: 1013 LSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSK 1072
Query: 118 PHAGRELPSR---WKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEVLEATSSYPWP 173
A P + P TR V DA H +++G V D++ +L S
Sbjct: 1073 EVATEYPPPQVVPANLPPTRNV-CQFDASWHLKDTLSGHGWVLVDQDIVLLLGLKS-ARK 1130
Query: 174 ILSPLLAEALSLRWSM 189
LSPL AE SL W+M
Sbjct: 1131 SLSPLHAEVDSLLWAM 1146
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana] gi|7488318|pir||T01191
RNA-directed DNA polymerase homolog F21E10.5 -
Arabidopsis thaliana
Length = 928
Score = 44.3 bits (103), Expect = 0.002
Identities = 24/79 (30%), Positives = 38/79 (47%), Gaps = 6/79 (7%)
Query: 15 GCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFA----TVEDFVSEMVREGMPEV 70
GC +C N +ET +HLF G+W A + +L + T+ +VS + +
Sbjct: 802 GCVLCNNNLETRDHLFFSCAYTSGIWEALAKNLLQRSYTTDWQTIISYVSGQCHDRVSCF 861
Query: 71 LA--AVQTMLYAIWESQNG 87
LA +Q +Y IW +NG
Sbjct: 862 LARSVLQASVYTIWRERNG 880
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,926,827
Number of Sequences: 2540612
Number of extensions: 12100485
Number of successful extensions: 26747
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 26685
Number of HSP's gapped (non-prelim): 88
length of query: 189
length of database: 863,360,394
effective HSP length: 121
effective length of query: 68
effective length of database: 555,946,342
effective search space: 37804351256
effective search space used: 37804351256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0011b.6