BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.3
(172 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD62537.1| putative AtRAD3 [Oryza sativa (japonica cultivar... 125 5e-28
dbj|BAB11344.1| AtRAD3 [Arabidopsis thaliana] 124 8e-28
dbj|BAA92828.1| AtRAD3 [Arabidopsis thaliana] 124 8e-28
ref|NP_198898.2| FAT domain-containing protein / phosphatidylino... 124 8e-28
gb|EAK81718.1| hypothetical protein UM00957.1 [Ustilago maydis 5... 37 0.17
ref|NP_342819.1| hypothetical protein SSO1375 [Sulfolobus solfat... 37 0.29
ref|NP_032009.2| Fas-associated factor 1 [Mus musculus] gi|40675... 36 0.49
sp|P54731|FAF1_MOUSE FAS-associated factor 1 (FAF1 protein) gi|1... 36 0.49
gb|AAP97263.1| Fas-associated protein factor FAF1 [Homo sapiens]... 36 0.49
ref|NP_569090.1| Fas-associated factor 1 [Rattus norvegicus] gi|... 36 0.49
emb|CAH72115.1| Fas (TNFRSF6) associated factor 1 [Homo sapiens]... 36 0.49
emb|CAH72114.1| Fas (TNFRSF6) associated factor 1 [Homo sapiens]... 36 0.49
ref|XP_513397.1| PREDICTED: FAS-associated factor 1 [Pan troglod... 36 0.49
emb|CAB63755.1| hypothetical protein [Homo sapiens] 36 0.49
gb|AAD51886.1| fas-associated factor 1 [Homo sapiens] 36 0.49
gb|AAD51876.1| Fas associated factor 1 [Homo sapiens] 36 0.49
ref|NP_572051.1| FAS-associated factor 1 isoform b [Homo sapiens] 36 0.49
gb|AAM47028.1| Fas-associated factor 1 [Danio rerio] 35 1.1
gb|AAH48887.1| Fas associated factor 1 [Danio rerio] gi|47085715... 35 1.1
emb|CAG07981.1| unnamed protein product [Tetraodon nigroviridis] 35 1.1
>dbj|BAD62537.1| putative AtRAD3 [Oryza sativa (japonica cultivar-group)]
gi|54291015|dbj|BAD61693.1| putative AtRAD3 [Oryza
sativa (japonica cultivar-group)]
Length = 2710
Score = 125 bits (314), Expect = 5e-28
Identities = 65/134 (48%), Positives = 91/134 (67%)
Query: 39 ANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVLPNLLHAYVVPSSSRNNDREVIAVVK 98
+++ L E IAASS+T + + P+ EV+ VLPNLL YVVPSS + RE AV+K
Sbjct: 6 SHIQELRELIAASSTTTSTSAPASVHFEVKLREVLPNLLRDYVVPSSPTADGREATAVLK 65
Query: 99 LISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLSLFRSGAR 158
L+S+TA FPGVFF G+ + V+ V+ +LP +A+P FRSRH + F+ + SLLSL R+G R
Sbjct: 66 LLSYTAGKFPGVFFHGRAADVIRVIGRVLPFFAEPNFRSRHEIIFDTVWSLLSLLRTGDR 125
Query: 159 DASTHFFLDPMLLI 172
+A FFLD M+ +
Sbjct: 126 EAYRQFFLDVMVAV 139
>dbj|BAB11344.1| AtRAD3 [Arabidopsis thaliana]
Length = 2810
Score = 124 bits (312), Expect = 8e-28
Identities = 76/141 (53%), Positives = 94/141 (65%), Gaps = 10/141 (7%)
Query: 40 NLSSLP----ERIAASSSTLTPN--NPSGE--ALEVRFCTVLPNLLHAYVVPSSSRNNDR 91
NLSSL ER+AAS+ST N + SG+ ALE+RF V+PNLL+ YVVPS N R
Sbjct: 7 NLSSLVHELRERVAASASTPANNLRHSSGDEDALEIRFRAVIPNLLNTYVVPSLG--NGR 64
Query: 92 EVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLS 151
EV AV+KL+ HTARN PGVF+ G PSA+LPV+A I+P +A+P F H V E +GSLL
Sbjct: 65 EVTAVLKLVGHTARNIPGVFYHGTPSAILPVIARIIPFFAEPEFVPGHGVLLETVGSLLM 124
Query: 152 LFRSGARDASTHFFLDPMLLI 172
L RS +R A FF D + I
Sbjct: 125 LLRSNSRKAYRIFFHDALQAI 145
>dbj|BAA92828.1| AtRAD3 [Arabidopsis thaliana]
Length = 2703
Score = 124 bits (312), Expect = 8e-28
Identities = 76/141 (53%), Positives = 94/141 (65%), Gaps = 10/141 (7%)
Query: 40 NLSSLP----ERIAASSSTLTPN--NPSGE--ALEVRFCTVLPNLLHAYVVPSSSRNNDR 91
NLSSL ER+AAS+ST N + SG+ ALE+RF V+PNLL+ YVVPS N R
Sbjct: 7 NLSSLVHELRERVAASASTPANNLRHSSGDEDALEIRFRAVIPNLLNTYVVPSLG--NGR 64
Query: 92 EVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLS 151
EV AV+KL+ HTARN PGVF+ G PSA+LPV+A I+P +A+P F H V E +GSLL
Sbjct: 65 EVTAVLKLVGHTARNIPGVFYHGTPSAILPVIARIIPFFAEPEFVPGHGVLLETVGSLLM 124
Query: 152 LFRSGARDASTHFFLDPMLLI 172
L RS +R A FF D + I
Sbjct: 125 LLRSNSRKAYRIFFHDALQAI 145
>ref|NP_198898.2| FAT domain-containing protein / phosphatidylinositol 3- and
4-kinase family protein [Arabidopsis thaliana]
gi|55976592|sp|Q9FKS4|RAD3A_ARATH Protein kinase ATR
(DNA-repair protein ATR) (AtATR) (Ataxia
telangiectasia-mutated and Rad3-related homolog)
(Rad3-like protein) (AtRAD3)
Length = 2702
Score = 124 bits (312), Expect = 8e-28
Identities = 76/141 (53%), Positives = 94/141 (65%), Gaps = 10/141 (7%)
Query: 40 NLSSLP----ERIAASSSTLTPN--NPSGE--ALEVRFCTVLPNLLHAYVVPSSSRNNDR 91
NLSSL ER+AAS+ST N + SG+ ALE+RF V+PNLL+ YVVPS N R
Sbjct: 7 NLSSLVHELRERVAASASTPANNLRHSSGDEDALEIRFRAVIPNLLNTYVVPSLG--NGR 64
Query: 92 EVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLS 151
EV AV+KL+ HTARN PGVF+ G PSA+LPV+A I+P +A+P F H V E +GSLL
Sbjct: 65 EVTAVLKLVGHTARNIPGVFYHGTPSAILPVIARIIPFFAEPEFVPGHGVLLETVGSLLM 124
Query: 152 LFRSGARDASTHFFLDPMLLI 172
L RS +R A FF D + I
Sbjct: 125 LLRSNSRKAYRIFFHDALQAI 145
>gb|EAK81718.1| hypothetical protein UM00957.1 [Ustilago maydis 521]
gi|49068566|ref|XP_398572.1| hypothetical protein
UM00957.1 [Ustilago maydis 521]
Length = 1214
Score = 37.4 bits (85), Expect = 0.17
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 14 PHSTLVRVREEEEEEEEAYFVSMAKANLSSL--PERIAASSSTLTPNNPSGEALEVRFCT 71
PH + + + +E+ E+EE S + +++ P R + +TP+NP+G L + +
Sbjct: 118 PHQSSLSMYQEDAEDEERAASSDLPSTFATISEPNRRCSDGDKVTPSNPTGFDLPL---S 174
Query: 72 VLPNLLHAYVVPSSSRNNDREVIAVVKLISHTARNFPG 109
+ V PSSSR + A L S + RN G
Sbjct: 175 TSSDRSRPVVAPSSSRTSTASSAAAFSLRSLSNRNSTG 212
>ref|NP_342819.1| hypothetical protein SSO1375 [Sulfolobus solfataricus P2]
gi|13814587|gb|AAK41609.1| Hypothetical protein SSO1375
[Sulfolobus solfataricus P2] gi|25394375|pir||B90294
hypothetical protein SSO1375 [imported] - Sulfolobus
solfataricus
Length = 613
Score = 36.6 bits (83), Expect = 0.29
Identities = 29/122 (23%), Positives = 53/122 (42%), Gaps = 12/122 (9%)
Query: 3 VKEKELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSG 62
V+ E + T P+S+++ E A ++ + + +A SSSTLTP
Sbjct: 240 VQTLEFLNTTSPYSSILIDSINNTIEAMANRFTIDNQTIDNSIIDLAYSSSTLTPGEQEF 299
Query: 63 EALEVRF------------CTVLPNLLHAYVVPSSSRNNDREVIAVVKLISHTARNFPGV 110
A V F ++LP L++ PS S + +++V +++ +A PGV
Sbjct: 300 YAYIVSFGGNITTKIESEIYSILPKLVNLIQYPSISNQSPTTIVSVFNVLNRSATKVPGV 359
Query: 111 FF 112
+
Sbjct: 360 VY 361
>ref|NP_032009.2| Fas-associated factor 1 [Mus musculus] gi|40675732|gb|AAH65098.1|
Fas-associated factor 1 [Mus musculus]
Length = 649
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 589
>sp|P54731|FAF1_MOUSE FAS-associated factor 1 (FAF1 protein) gi|1127764|gb|AAA92091.1|
FAF1
Length = 649
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 589
>gb|AAP97263.1| Fas-associated protein factor FAF1 [Homo sapiens]
gi|55665563|emb|CAH72113.1| Fas (TNFRSF6) associated
factor 1 [Homo sapiens] gi|55664288|emb|CAH70189.1| Fas
(TNFRSF6) associated factor 1 [Homo sapiens]
gi|56204137|emb|CAI23009.1| Fas (TNFRSF6) associated
factor 1 [Homo sapiens] gi|6729590|emb|CAB67705.1|
Fas-associated factor, FAF1 [Homo sapiens]
gi|4680647|gb|AAD27713.1| CGI-03 protein [Homo sapiens]
gi|45501218|gb|AAH67100.1| FAS-associated factor 1,
isoform a [Homo sapiens] gi|13436377|gb|AAH04970.1|
FAS-associated factor 1, isoform a [Homo sapiens]
gi|20454906|sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1
(FAF1 protein) (hFAF1) gi|5901948|ref|NP_008982.1|
FAS-associated factor 1 isoform a [Homo sapiens]
Length = 650
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 539 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 590
>ref|NP_569090.1| Fas-associated factor 1 [Rattus norvegicus]
gi|15284036|gb|AAK94676.1| fas-associated factor 1
[Rattus norvegicus] gi|20454883|sp|Q924K2|FAF1_RAT
FAS-associated factor 1 (FAF1 protein)
Length = 649
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPEEENAEPVSKLRIRTPSGEFLERRF 589
>emb|CAH72115.1| Fas (TNFRSF6) associated factor 1 [Homo sapiens]
gi|56204140|emb|CAI23012.1| Fas (TNFRSF6) associated
factor 1 [Homo sapiens]
Length = 464
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 345 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 396
>emb|CAH72114.1| Fas (TNFRSF6) associated factor 1 [Homo sapiens]
gi|55664289|emb|CAH70190.1| Fas (TNFRSF6) associated
factor 1 [Homo sapiens] gi|56204138|emb|CAI23010.1| Fas
(TNFRSF6) associated factor 1 [Homo sapiens]
Length = 490
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 379 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 430
>ref|XP_513397.1| PREDICTED: FAS-associated factor 1 [Pan troglodytes]
Length = 707
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 596 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 647
>emb|CAB63755.1| hypothetical protein [Homo sapiens]
Length = 554
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 443 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 494
>gb|AAD51886.1| fas-associated factor 1 [Homo sapiens]
Length = 650
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 539 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 590
>gb|AAD51876.1| Fas associated factor 1 [Homo sapiens]
Length = 490
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 379 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 430
>ref|NP_572051.1| FAS-associated factor 1 isoform b [Homo sapiens]
Length = 498
Score = 35.8 bits (81), Expect = 0.49
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 387 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 438
>gb|AAM47028.1| Fas-associated factor 1 [Danio rerio]
Length = 681
Score = 34.7 bits (78), Expect = 1.1
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 20 RVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
R+R+E+EEE EA +S+ +A E S L PSGE LE RF
Sbjct: 564 RIRKEQEEEREAIRLSLEQALPPEPKEEGGEPISKLRIRTPSGEFLERRF 613
>gb|AAH48887.1| Fas associated factor 1 [Danio rerio] gi|47085715|ref|NP_998138.1|
Fas associated factor 1 [Danio rerio]
Length = 673
Score = 34.7 bits (78), Expect = 1.1
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 20 RVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
R+R+E+EEE EA +S+ +A E S L PSGE LE RF
Sbjct: 564 RIRKEQEEEREAIRLSLEQALPPEPKEEGGEPISKLRIRTPSGEFLERRF 613
>emb|CAG07981.1| unnamed protein product [Tetraodon nigroviridis]
Length = 692
Score = 34.7 bits (78), Expect = 1.1
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L R+R+E+EEE++A +S+ +A E S L PSGE LE RF
Sbjct: 602 LERMRKEQEEEKKAIRLSLEQALPPEPSENSGKQISKLRIRTPSGEFLERRF 653
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,178,381
Number of Sequences: 2540612
Number of extensions: 11651305
Number of successful extensions: 36919
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 36888
Number of HSP's gapped (non-prelim): 38
length of query: 172
length of database: 863,360,394
effective HSP length: 119
effective length of query: 53
effective length of database: 561,027,566
effective search space: 29734460998
effective search space used: 29734460998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0010.3