BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.2
(370 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB89227.1| putative RNA binding protein [Arabidopsis thalia... 418 e-115
gb|AAO72701.1| putative RNA-binding protein [Oryza sativa (japon... 382 e-105
gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana] gi... 375 e-102
emb|CAB80892.1| putative protein [Arabidopsis thaliana] gi|22528... 356 5e-97
gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP d... 350 3e-95
gb|AAP52145.1| putative RNA-binding protein [Oryza sativa (japon... 345 1e-93
ref|XP_321712.2| ENSANGP00000023817 [Anopheles gambiae str. PEST... 176 1e-42
ref|XP_321714.2| ENSANGP00000023687 [Anopheles gambiae str. PEST... 168 2e-40
gb|AAN13835.1| CG17838-PB, isoform B [Drosophila melanogaster] g... 167 5e-40
emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis] 165 2e-39
ref|XP_392307.2| PREDICTED: similar to CG17838-PE, isoform E [Ap... 162 2e-38
gb|AAH04679.1| Hnrpr protein [Mus musculus] 161 3e-38
ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus ... 161 3e-38
gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus... 161 3e-38
gb|AAO39657.1| AT01548p [Drosophila melanogaster] 161 3e-38
gb|AAN13834.1| CG17838-PF, isoform F [Drosophila melanogaster] g... 161 3e-38
gb|AAF55805.2| CG17838-PD, isoform D [Drosophila melanogaster] g... 161 3e-38
gb|AAN13831.1| CG17838-PE, isoform E [Drosophila melanogaster] g... 161 3e-38
gb|AAN13832.2| CG17838-PA, isoform A [Drosophila melanogaster] g... 161 3e-38
ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Ratt... 161 3e-38
>emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|15231284|ref|NP_190834.1| RNA recognition motif
(RRM)-containing protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|51970792|dbj|BAD44088.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|11358672|pir||T49019 probable RNA binding protein -
Arabidopsis thaliana
Length = 471
Score = 418 bits (1075), Expect = e-115
Identities = 198/325 (60%), Positives = 262/325 (79%), Gaps = 5/325 (1%)
Query: 6 TNDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE 65
T +E EKK+H ELLALPPH SEVY+GGI + +E DL+ FC S+GEV+EVRIM+ K+SG+
Sbjct: 72 TEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGD 131
Query: 66 RKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKV 125
KGYAFV F++K+LA++AI+ LNN++F+GK+IKCS++QAKHRLF+GN+P+ W D+KK
Sbjct: 132 GKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKA 191
Query: 126 VADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSW 185
+GPGV +EL K+ Q+ GRNRGFAFIEYYNHACAEYS+QKMSN +FKL++NAPTVSW
Sbjct: 192 ANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSW 251
Query: 186 AEPRN--SESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRF 243
AE R+ S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI KVV+PPAK G+E SR+
Sbjct: 252 AESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRY 311
Query: 244 GFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTS--NSQKPVVLPTYPH 301
GFVH+++R+S M+ALKNTE+YEIDG L+C+LAKP+ADQ+++ + N QK + P YP
Sbjct: 312 GFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPP 371
Query: 302 RLGYGMVGGAYGGIGAGYGAAGFAQ 326
L YGM +G +G G+GA+ ++Q
Sbjct: 372 LLSYGMAPSPFGALG-GFGASAYSQ 395
>gb|AAO72701.1| putative RNA-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 476
Score = 382 bits (982), Expect = e-105
Identities = 191/319 (59%), Positives = 255/319 (79%), Gaps = 12/319 (3%)
Query: 5 HTNDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESG 64
H D EK KHAELLALPPH SEVY+GGI+++VS EDL+ C+ VGEV EVR+M+ K+
Sbjct: 102 HQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD-- 159
Query: 65 ERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKK 124
+ +GYAFV F+TK LA +A++ELNN++ KGK+I+ SSSQAK++LFIGN+P WT +D +K
Sbjct: 160 DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRK 219
Query: 125 VVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVS 184
VV +VGPGV+ +L+K + S+ RNRG+ F+EYYNHACAEY+RQ+MS+ FKL++NAPTVS
Sbjct: 220 VVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVS 278
Query: 185 WAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFG 244
WA+P+N++S++ SQVK+VYVKNLP+N+TQ LK+LFEHHG+I KVVLPP++ G + +R+G
Sbjct: 279 WADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYG 337
Query: 245 FVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEA----DQRSSGTSNSQKPVVLPTYP 300
FVHF DRS AM+AL+NTE+YE+DG+ L+CSLAKP A D R S++ P +LP+YP
Sbjct: 338 FVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAP-LLPSYP 396
Query: 301 HRLGYGM--VGGAYGGIGA 317
LGYG+ V GAYG A
Sbjct: 397 -PLGYGIMSVPGAYGAAPA 414
>gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1| AT4g00830/A_TM018A10_14
[Arabidopsis thaliana] gi|18411454|ref|NP_567192.1| RNA
recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 495
Score = 375 bits (962), Expect = e-102
Identities = 181/324 (55%), Positives = 251/324 (76%), Gaps = 15/324 (4%)
Query: 8 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 67
D+ +++K++ LL+LPPH SEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 68 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 127
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 128 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 187
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WA+
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 188 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 245
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 246 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR------SSGTSNSQKPVVLPTY 299
VH+++RSSA+KA+K+TE+YE++G+ LE LAKP+A+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
Query: 300 PHRLGYGMVGGAYGGIGAGYGAAG 323
G YG +GAG G AG
Sbjct: 396 G-----GFAAAPYGAMGAGLGIAG 414
>emb|CAB80892.1| putative protein [Arabidopsis thaliana] gi|2252863|gb|AAB62861.1|
similar to nucleolin protein [Arabidopsis thaliana]
gi|7485284|pir||T01563 hypothetical protein
A_TM018A10.14 - Arabidopsis thaliana
Length = 521
Score = 356 bits (914), Expect = 5e-97
Identities = 181/350 (51%), Positives = 251/350 (71%), Gaps = 41/350 (11%)
Query: 8 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVR----------- 56
D+ +++K++ LL+LPPH SEV+IGG+ +V EEDLR C+ +GE+ EVR
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDIL 157
Query: 57 ---IMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFK------------GKKIKCSS 101
+MK ++SG+ KGYAFVAFKTK++A +AIEEL++ EFK GK I+CS
Sbjct: 158 FVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSL 217
Query: 102 SQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHAC 161
S+ K+RLFIGNIPK WT ++ +KV+ DVGPGV +IEL+KD ++ RNRGFAF+ YYN+AC
Sbjct: 218 SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNAC 277
Query: 162 AEYSRQKMSNSNFKLENNAPTVSWAEPRNS--ESSAVSQVKAVYVKNLPENITQDSLKKL 219
A+YSRQKM +SNFKLE NAPTV+WA+P++S S+A +QVKA+YVKN+PEN + + LK+L
Sbjct: 278 ADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKEL 337
Query: 220 FEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPE 279
F+ HG++TK+V PP K G K FGFVH+++RSSA+KA+K+TE+YE++G+ LE LAKP+
Sbjct: 338 FQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 395
Query: 280 ADQR------SSGTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGYGAAG 323
A+++ S G + + P V PT+ G YG +GAG G AG
Sbjct: 396 AERKHDPSSYSYGAAPTPAPFVHPTFG-----GFAAAPYGAMGAGLGIAG 440
>gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa (japonica cultivar-group)]
Length = 465
Score = 350 bits (899), Expect = 3e-95
Identities = 174/317 (54%), Positives = 234/317 (72%), Gaps = 9/317 (2%)
Query: 8 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 67
D+ EK+K ELLALPP SEV+IGG+ + +EEDLR C S GE+ EVR+MK KE+ E K
Sbjct: 86 DDDEKRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENK 145
Query: 68 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 127
G+AFV F KE A +AIEEL++ E KG+ ++CS SQAKHRLF+GN+PK E+++K++
Sbjct: 146 GFAFVNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQ 205
Query: 128 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 187
GPGV++IE+ KDL RNRGF F+EYYNHACA+Y+RQK+S NFK++ + TVSWAE
Sbjct: 206 GKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAE 265
Query: 188 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 245
P+ S SSA +QVK +YVKNLPEN +++ +K++FE HG++TKVVLPPAK G ++ FGF
Sbjct: 266 PKGSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGF 324
Query: 246 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGY 305
VHF++RSSA+KA+K +EKYE +G+ LE S+AKP D++ +S KP P +P
Sbjct: 325 VHFAERSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKK---PDHSFKPAGAPNFPLPPYG 381
Query: 306 GMVG---GAYGGIGAGY 319
G +G GAYGG G G+
Sbjct: 382 GYMGDPYGAYGGGGPGF 398
>gb|AAP52145.1| putative RNA-binding protein [Oryza sativa (japonica
cultivar-group)] gi|37531112|ref|NP_919858.1| putative
RNA-binding protein [Oryza sativa (japonica
cultivar-group)] gi|18425248|gb|AAL69426.1| Putative
RNA-binding protein [Oryza sativa]
Length = 472
Score = 345 bits (886), Expect = 1e-93
Identities = 170/319 (53%), Positives = 237/319 (74%), Gaps = 11/319 (3%)
Query: 8 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 67
DE EK+K ELLALPP SEV+IGG+ + +E+DL C++ GE+SEVR+MK KE+ E K
Sbjct: 91 DEEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENK 150
Query: 68 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 127
G+AFV F K+ A +AIE+L++ E KG+ ++CS SQAKHRLF+GN+PK + ++++ ++
Sbjct: 151 GFAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQ 210
Query: 128 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 187
GPGV++IE+ KDL RNRGF F+EYYNHACA+Y++QK+S NFK++ + TVSWAE
Sbjct: 211 GKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAE 270
Query: 188 PRNS----ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRF 243
P+ S SSA +QVK +YVKNLPEN +++ +K++FE HG++TKVVLPPAK+G ++ F
Sbjct: 271 PKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRD-F 329
Query: 244 GFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRL 303
GFVHF++RSSA+KA+K +EKYEIDG+ LE S+AKP D++ +S KP P +P
Sbjct: 330 GFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKK---PDHSFKPGGAPNFPLPP 386
Query: 304 GYGMVG---GAYGGIGAGY 319
G +G GAYGG G G+
Sbjct: 387 YGGYMGDPYGAYGGGGPGF 405
>ref|XP_321712.2| ENSANGP00000023817 [Anopheles gambiae str. PEST]
gi|55233929|gb|EAA43191.2| ENSANGP00000023817 [Anopheles
gambiae str. PEST]
Length = 470
Score = 176 bits (445), Expect = 1e-42
Identities = 89/264 (33%), Positives = 157/264 (58%), Gaps = 10/264 (3%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P + EV+ G I ++ E++L + G++ ++R+M +G +GYAFV F +++ AS
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 82 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 140
A+ ELN+ E + GKKI + S HRLF+GNIPK +++ + A PG++ + +
Sbjct: 224 NAVRELNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVEVIIYS 283
Query: 141 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQV 199
+NRGF F+EY +H A +++++ K+ N V WA+P+ + +S+V
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQTMSKV 343
Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
K +YV+NL ++ +++ LK+ FE G++ +V ++ + FVHF DR +A+KA+K
Sbjct: 344 KVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 260 NTEKYEIDGKNLECSLAKPEADQR 283
+ + E+ G N+E SLAKP +D++
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>ref|XP_321714.2| ENSANGP00000023687 [Anopheles gambiae str. PEST]
gi|58429795|ref|XP_321711.2| ENSANGP00000025309
[Anopheles gambiae str. PEST] gi|55233928|gb|EAA43190.2|
ENSANGP00000025309 [Anopheles gambiae str. PEST]
gi|55233927|gb|EAA43192.2| ENSANGP00000023687 [Anopheles
gambiae str. PEST]
Length = 470
Score = 168 bits (426), Expect = 2e-40
Identities = 87/264 (32%), Positives = 153/264 (57%), Gaps = 10/264 (3%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P + EV+ G I ++ E++L + G++ ++R+M +G +GYAFV F +++ AS
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 82 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 140
A+ ELNN E K G +K + S RLF+GNIPK E++ + G++ + +
Sbjct: 224 NAVRELNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLVEVIIYS 283
Query: 141 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQV 199
+NRGF F+EY +H A +++++ K+ N V WA+P+ + +S+V
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQTMSKV 343
Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
K +YV+NL ++ +++ LK+ FE G++ +V ++ + FVHF DR +A+KA+K
Sbjct: 344 KVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 260 NTEKYEIDGKNLECSLAKPEADQR 283
+ + E+ G N+E SLAKP +D++
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>gb|AAN13835.1| CG17838-PB, isoform B [Drosophila melanogaster]
gi|21356139|ref|NP_650913.1| CG17838-PB, isoform B
[Drosophila melanogaster] gi|16197897|gb|AAL13706.1|
GH28335p [Drosophila melanogaster]
Length = 529
Score = 167 bits (423), Expect = 5e-40
Identities = 86/265 (32%), Positives = 153/265 (57%), Gaps = 10/265 (3%)
Query: 21 LPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELA 80
+P + EV+ G I ++ E++L ++ G + ++R+M +G +GYAFV F +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 81 SQAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 139
A+ +LN+ E + GKKI + S HRLF+GNIPK +++ + + PG+ + +
Sbjct: 219 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 278
Query: 140 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQ 198
+NRGF F+EY +H A +++++ K+ V WA+P+ + +S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 199 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 258
VK +YV+NL +++++D LK+ FE +GK+ +V ++ + F+HF DR SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 259 KNTEKYEIDGKNLECSLAKPEADQR 283
+ EI N+E SLAKP +D++
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 165 bits (417), Expect = 2e-39
Identities = 88/274 (32%), Positives = 155/274 (56%), Gaps = 10/274 (3%)
Query: 20 ALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKEL 79
A PP +E+++G I ++ E++L + G + ++R+M SG +GYAFV F +KE
Sbjct: 156 AQPPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEA 215
Query: 80 ASQAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIEL 138
A +A++ NN E + GK+I S A +RLF+G+IPK T E + + + V G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVIL 275
Query: 139 LKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVS 197
Q +NRGF F+EY +H A +R+++ + K+ N TV WA+P + + ++
Sbjct: 276 YLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA 335
Query: 198 QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKA 257
+VK ++V+NL ++T++ L+K F +G + +V ++ + F+HF +R A+KA
Sbjct: 336 KVKVLFVRNLANSVTEEILEKAFSEYGNLERV--------KKLKDYAFIHFEERDGAVKA 387
Query: 258 LKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQ 291
L+ E++G+ +E AKP +R + Q
Sbjct: 388 LEELNGKELEGEPIEIVFAKPPDQKRKERKAQRQ 421
>ref|XP_392307.2| PREDICTED: similar to CG17838-PE, isoform E [Apis mellifera]
Length = 659
Score = 162 bits (409), Expect = 2e-38
Identities = 95/310 (30%), Positives = 165/310 (52%), Gaps = 16/310 (5%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P EV+ G I ++ E++L + G++ ++R+M +G +GYAF+ F +E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 82 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 140
QA+ EL+N E K GK +K + S RLF+GNIPK E++ + + G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 141 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQV 199
+NRGF F+EY +H A +++++S K+ V WA+P+ + +S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
+ +YVKNL ++ +++ LK+ FE +G I +V ++ + FVHF +R +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 260 NTEKYEIDGKNLECSLAKPEADQRSSGTS-NSQKPVVLPTYPHRLG-----YGMVGGAYG 313
EI G ++E SLAKP +D++ +++ ++ + R G M+GG
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRSGGSPSHPSMMGGPMP 450
Query: 314 GIGAGYGAAG 323
G G G G
Sbjct: 451 VRGPGQGPRG 460
Score = 42.0 bits (97), Expect = 0.030
Identities = 26/92 (28%), Positives = 47/92 (50%), Gaps = 1/92 (1%)
Query: 188 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 247
P N E V+ +P+++ +D L LFE GKI + L + F+
Sbjct: 151 PPNWEGPTPGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFIT 210
Query: 248 FSDRSSAMKALKNTEKYEI-DGKNLECSLAKP 278
F++R +A +A++ + +EI GKNL+ +++ P
Sbjct: 211 FTNREAAQQAVRELDNHEIKPGKNLKVNISVP 242
>gb|AAH04679.1| Hnrpr protein [Mus musculus]
Length = 601
Score = 161 bits (408), Expect = 3e-38
Identities = 97/307 (31%), Positives = 166/307 (53%), Gaps = 17/307 (5%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P +EV++G I ++ E++L + G + ++R+M SG+ +GYAF+ F KE A
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 82 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 140
+A++ ++ E + GK + S A +RLF+G+IPK T E++ + + V G++ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 141 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVSQV 199
+NRGF F+EY +H A +R+++ + K+ N TV WA+P + +++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 309
Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
K ++V+NL +T++ L+K F GK+ +V ++ + FVHF DR +A+KA+
Sbjct: 310 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 361
Query: 260 NTEKYEIDGKNLECSLAKP---EADQRSSGTSNSQKPVVLPTY---PHRLGYGMVGGAYG 313
EI+G+ +E LAKP + +R + S+ Y P R+ M G G
Sbjct: 362 EMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRG 421
Query: 314 GIGAGYG 320
G G GYG
Sbjct: 422 GRG-GYG 427
>ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear
ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1| heterogeneous nuclear
ribonucleoprotein R [Mus musculus]
Length = 632
Score = 161 bits (408), Expect = 3e-38
Identities = 97/307 (31%), Positives = 166/307 (53%), Gaps = 17/307 (5%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P +EV++G I ++ E++L + G + ++R+M SG+ +GYAF+ F KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 82 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 140
+A++ ++ E + GK + S A +RLF+G+IPK T E++ + + V G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 141 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVSQV 199
+NRGF F+EY +H A +R+++ + K+ N TV WA+P + +++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
K ++V+NL +T++ L+K F GK+ +V ++ + FVHF DR +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 260 NTEKYEIDGKNLECSLAKP---EADQRSSGTSNSQKPVVLPTY---PHRLGYGMVGGAYG 313
EI+G+ +E LAKP + +R + S+ Y P R+ M G G
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRG 452
Query: 314 GIGAGYG 320
G G GYG
Sbjct: 453 GRG-GYG 458
>gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 161 bits (408), Expect = 3e-38
Identities = 97/307 (31%), Positives = 166/307 (53%), Gaps = 17/307 (5%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P +EV++G I ++ E++L + G + ++R+M SG+ +GYAF+ F KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 82 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 140
+A++ ++ E + GK + S A +RLF+G+IPK T E++ + + V G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 141 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVSQV 199
+NRGF F+EY +H A +R+++ + K+ N TV WA+P + +++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
K ++V+NL +T++ L+K F GK+ +V ++ + FVHF DR +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 260 NTEKYEIDGKNLECSLAKP---EADQRSSGTSNSQKPVVLPTY---PHRLGYGMVGGAYG 313
EI+G+ +E LAKP + +R + S+ Y P R+ M G G
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRG 452
Query: 314 GIGAGYG 320
G G GYG
Sbjct: 453 GRG-GYG 458
>gb|AAO39657.1| AT01548p [Drosophila melanogaster]
Length = 626
Score = 161 bits (408), Expect = 3e-38
Identities = 84/265 (31%), Positives = 151/265 (56%), Gaps = 10/265 (3%)
Query: 21 LPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELA 80
+P + EV+ G I ++ E++L ++ G + ++R+M +G +GYAFV F +E A
Sbjct: 120 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 179
Query: 81 SQAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 139
A+ +L+N E K GK +K + S RLF+GNIPK +++ + + G+ + +
Sbjct: 180 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 239
Query: 140 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQ 198
+NRGF F+EY +H A +++++ K+ V WA+P+ + +S+
Sbjct: 240 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 299
Query: 199 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 258
VK +YV+NL +++++D LK+ FE +GK+ +V ++ + F+HF DR SA++A+
Sbjct: 300 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 351
Query: 259 KNTEKYEIDGKNLECSLAKPEADQR 283
+ EI N+E SLAKP +D++
Sbjct: 352 RGLNGKEIGASNIEVSLAKPPSDKK 376
>gb|AAN13834.1| CG17838-PF, isoform F [Drosophila melanogaster]
gi|23171811|gb|AAN13833.1| CG17838-PC, isoform C
[Drosophila melanogaster] gi|24648528|ref|NP_732559.1|
CG17838-PF, isoform F [Drosophila melanogaster]
gi|24648526|ref|NP_732558.1| CG17838-PC, isoform C
[Drosophila melanogaster]
Length = 529
Score = 161 bits (408), Expect = 3e-38
Identities = 84/265 (31%), Positives = 151/265 (56%), Gaps = 10/265 (3%)
Query: 21 LPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELA 80
+P + EV+ G I ++ E++L ++ G + ++R+M +G +GYAFV F +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 81 SQAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 139
A+ +L+N E K GK +K + S RLF+GNIPK +++ + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 140 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQ 198
+NRGF F+EY +H A +++++ K+ V WA+P+ + +S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 199 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 258
VK +YV+NL +++++D LK+ FE +GK+ +V ++ + F+HF DR SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 259 KNTEKYEIDGKNLECSLAKPEADQR 283
+ EI N+E SLAKP +D++
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gb|AAF55805.2| CG17838-PD, isoform D [Drosophila melanogaster]
gi|24648522|ref|NP_732556.1| CG17838-PD, isoform D
[Drosophila melanogaster]
Length = 707
Score = 161 bits (408), Expect = 3e-38
Identities = 84/265 (31%), Positives = 151/265 (56%), Gaps = 10/265 (3%)
Query: 21 LPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELA 80
+P + EV+ G I ++ E++L ++ G + ++R+M +G +GYAFV F +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 81 SQAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 139
A+ +L+N E K GK +K + S RLF+GNIPK +++ + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 140 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQ 198
+NRGF F+EY +H A +++++ K+ V WA+P+ + +S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 199 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 258
VK +YV+NL +++++D LK+ FE +GK+ +V ++ + F+HF DR SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 259 KNTEKYEIDGKNLECSLAKPEADQR 283
+ EI N+E SLAKP +D++
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gb|AAN13831.1| CG17838-PE, isoform E [Drosophila melanogaster]
gi|24648520|ref|NP_732555.1| CG17838-PE, isoform E
[Drosophila melanogaster]
Length = 571
Score = 161 bits (408), Expect = 3e-38
Identities = 84/265 (31%), Positives = 151/265 (56%), Gaps = 10/265 (3%)
Query: 21 LPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELA 80
+P + EV+ G I ++ E++L ++ G + ++R+M +G +GYAFV F +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 81 SQAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 139
A+ +L+N E K GK +K + S RLF+GNIPK +++ + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 140 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQ 198
+NRGF F+EY +H A +++++ K+ V WA+P+ + +S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 199 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 258
VK +YV+NL +++++D LK+ FE +GK+ +V ++ + F+HF DR SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 259 KNTEKYEIDGKNLECSLAKPEADQR 283
+ EI N+E SLAKP +D++
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gb|AAN13832.2| CG17838-PA, isoform A [Drosophila melanogaster]
gi|45551939|ref|NP_732557.2| CG17838-PA, isoform A
[Drosophila melanogaster]
Length = 563
Score = 161 bits (408), Expect = 3e-38
Identities = 84/265 (31%), Positives = 151/265 (56%), Gaps = 10/265 (3%)
Query: 21 LPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELA 80
+P + EV+ G I ++ E++L ++ G + ++R+M +G +GYAFV F +E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 81 SQAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 139
A+ +L+N E K GK +K + S RLF+GNIPK +++ + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 140 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS-ESSAVSQ 198
+NRGF F+EY +H A +++++ K+ V WA+P+ + +S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 199 VKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 258
VK +YV+NL +++++D LK+ FE +GK+ +V ++ + F+HF DR SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 259 KNTEKYEIDGKNLECSLAKPEADQR 283
+ EI N+E SLAKP +D++
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear
ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 161 bits (408), Expect = 3e-38
Identities = 97/307 (31%), Positives = 166/307 (53%), Gaps = 17/307 (5%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P +EV++G I ++ E++L + G + ++R+M SG+ +GYAF+ F KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 82 QAIEELNNSEFK-GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLK 140
+A++ ++ E + GK + S A +RLF+G+IPK T E++ + + V G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 141 DLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVSQV 199
+NRGF F+EY +H A +R+++ + K+ N TV WA+P + +++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 200 KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK 259
K ++V+NL +T++ L+K F GK+ +V ++ + FVHF DR +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 260 NTEKYEIDGKNLECSLAKP---EADQRSSGTSNSQKPVVLPTY---PHRLGYGMVGGAYG 313
EI+G+ +E LAKP + +R + S+ Y P R+ M G G
Sbjct: 393 EMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRG 452
Query: 314 GIGAGYG 320
G G GYG
Sbjct: 453 GRG-GYG 458
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,814,938
Number of Sequences: 2540612
Number of extensions: 25530545
Number of successful extensions: 122030
Number of sequences better than 10.0: 4979
Number of HSP's better than 10.0 without gapping: 3202
Number of HSP's successfully gapped in prelim test: 1786
Number of HSP's that attempted gapping in prelim test: 103640
Number of HSP's gapped (non-prelim): 14255
length of query: 370
length of database: 863,360,394
effective HSP length: 129
effective length of query: 241
effective length of database: 535,621,446
effective search space: 129084768486
effective search space used: 129084768486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0010.2