BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.17
(237 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH71449.1| Ppig protein [Danio rerio] 45 0.001
gb|AAH44189.1| Peptidyl-prolyl isomerase G (cyclophilin G) [Dani... 45 0.001
ref|XP_322416.1| predicted protein [Neurospora crassa] gi|289188... 45 0.002
gb|AAH75873.1| Zgc:92059 [Danio rerio] gi|51011053|ref|NP_001003... 42 0.019
emb|CAD38974.2| hypothetical protein [Homo sapiens] 41 0.032
ref|XP_514860.1| PREDICTED: splicing factor, arginine/serine-ric... 41 0.032
ref|XP_531540.1| PREDICTED: splicing factor, arginine/serine-ric... 41 0.032
gb|AAH64990.1| Splicing factor, arginine/serine-rich 15 [Homo sa... 41 0.032
gb|AAD09327.1| pre-mRNA splicing SR protein rA4 [Homo sapiens] 41 0.032
dbj|BAA86486.1| KIAA1172 protein [Homo sapiens] 41 0.032
emb|CAD70375.1| probable fluconazole resistance protein [Neurosp... 40 0.042
ref|ZP_00506230.1| similar to Chromosome segregation ATPases [Po... 40 0.071
gb|EAA67748.1| hypothetical protein FG09864.1 [Gibberella zeae P... 40 0.071
gb|AAS53180.1| AFL194Wp [Ashbya gossypii ATCC 10895] gi|45198327... 40 0.071
emb|CAB62436.1| U1 snRNP 70K protein [Arabidopsis thaliana] gi|2... 39 0.093
pir||S28147 U1 snRNP 70K protein - Arabidopsis thaliana (fragment) 39 0.093
gb|EAA58938.1| hypothetical protein AN4270.2 [Aspergillus nidula... 39 0.093
gb|EAA47458.1| hypothetical protein MG02701.4 [Magnaporthe grise... 39 0.093
emb|CAB64866.1| SF1 protein [Caenorhabditis elegans] gi|14530600... 39 0.12
gb|EAK86269.1| hypothetical protein UM04814.1 [Ustilago maydis 5... 39 0.12
>gb|AAH71449.1| Ppig protein [Danio rerio]
Length = 392
Score = 45.4 bits (106), Expect = 0.001
Identities = 39/129 (30%), Positives = 57/129 (43%), Gaps = 9/129 (6%)
Query: 88 QKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTD 147
+K++++G D + + T+ P P + E+R + P +P S E K D
Sbjct: 233 KKKEKKGS--DEEEAEPQAVSTIRPEEVPP--IPENRFLMRRSPEKPKEEEQSKEKDKVD 288
Query: 148 KRRRR-RDPGKEIERDREPPIETSHPNLHR---DRDGGGMERRGARSRETAKRDR-ETMD 202
R R RD +E ER+RE P+ S PN R R G ++ RG R T R R + D
Sbjct: 289 SGRERPRDRDRERERERERPMANSRPNRTRLVMTRSGRRIKGRGPRRYRTPSRSRSRSWD 348
Query: 203 HHHALHLPP 211
PP
Sbjct: 349 RFRRSETPP 357
>gb|AAH44189.1| Peptidyl-prolyl isomerase G (cyclophilin G) [Danio rerio]
gi|47087459|ref|NP_998629.1| peptidyl-prolyl isomerase G
(cyclophilin G) [Danio rerio]
Length = 687
Score = 45.4 bits (106), Expect = 0.001
Identities = 39/129 (30%), Positives = 57/129 (43%), Gaps = 9/129 (6%)
Query: 88 QKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTD 147
+K++++G D + + T+ P P + E+R + P +P S E K D
Sbjct: 233 KKKEKKGS--DEEEAEPQAVSTIRPEEVPP--IPENRFLMRRSPEKPKEEEQSKEKDKVD 288
Query: 148 KRRRR-RDPGKEIERDREPPIETSHPNLHR---DRDGGGMERRGARSRETAKRDR-ETMD 202
R R RD +E ER+RE P+ S PN R R G ++ RG R T R R + D
Sbjct: 289 SGRERPRDRDRERERERERPMANSRPNRTRLVMTRSGRRIKGRGPRRYRTPSRSRSRSWD 348
Query: 203 HHHALHLPP 211
PP
Sbjct: 349 RFRRSETPP 357
>ref|XP_322416.1| predicted protein [Neurospora crassa] gi|28918896|gb|EAA28565.1|
predicted protein [Neurospora crassa]
Length = 492
Score = 44.7 bits (104), Expect = 0.002
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 132 PQPTTFTLSTEPRKTDK-RRRRRDPGKEIERDREPPIETSHPNLHR----DRDGGGMERR 186
P+ T F + R++ + RRRRR + R R P + HR DRDG G ER
Sbjct: 137 PKVTKFRFKDKDRESQRRRRRRRSRSRSRSRSRSPRSDRHRSRRHRSEEDDRDGRGRERG 196
Query: 187 GARSRETAK-----RDRETMD----------HHHALHLPPQIPEP 216
+R R + +D ET D HHH H + P P
Sbjct: 197 RSRDRSRDRDRNRDKDEETKDGEPRRKHRHRHHHRRHRRHRSPTP 241
>gb|AAH75873.1| Zgc:92059 [Danio rerio] gi|51011053|ref|NP_001003483.1|
hypothetical protein LOC445089 [Danio rerio]
Length = 313
Score = 41.6 bits (96), Expect = 0.019
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Query: 86 EKQKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRK 145
+K++ + L+DP+ + +++ + E ++ Q P P ++ PR+
Sbjct: 166 QKRQVLEEAELLDPRISALEEDLDEVETSEEEDDEDEKPERMQSPEPHRRSYRDMDRPRR 225
Query: 146 TDKRRRRRDPGKEIERDREPPIETSHPNLHRDRD-GGGMERRGARSRETAKRDRETMDHH 204
+ R RR R R P + P RDRD R RSR +R R H
Sbjct: 226 SPSPRYRRSRSPR-RRSRSPKRRSPSPRRERDRDRHRSKSPRRHRSRSRERRHRSKSPGH 284
Query: 205 HALH 208
H H
Sbjct: 285 HRSH 288
>emb|CAD38974.2| hypothetical protein [Homo sapiens]
Length = 1125
Score = 40.8 bits (94), Expect = 0.032
Identities = 32/111 (28%), Positives = 46/111 (40%), Gaps = 24/111 (21%)
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRR-----------RRDPGKEIE 160
P Q P + +QQQ PP QP + + D R++ RR G +E
Sbjct: 929 PQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVE 988
Query: 161 RDREPPIETSHPNLHRDRDGGGMERR--GARS------RETAKRDRETMDH 203
DRE + N + DRD +RR G RS R+ +R+R + H
Sbjct: 989 NDRE-----RYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGH 1034
Score = 35.8 bits (81), Expect = 1.0
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 94 GFLVDPKFT-VASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEP--------- 143
G L P F +A P+ P QQP+ + Q +P +P + E
Sbjct: 369 GLLPTPPFPPMAQPVIPPTPPVQQPFQA-SFQAQNEPLTQKPHQQEMEVEQPCIQEVKRH 427
Query: 144 RKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERR--GARSRETAKRDRETM 201
+++ R R + +R R S + HR +RR RSR +RDRE
Sbjct: 428 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKE 487
Query: 202 DHHHALHLPPQIPE 215
LP PE
Sbjct: 488 RERRQKGLPQVKPE 501
>ref|XP_514860.1| PREDICTED: splicing factor, arginine/serine-rich 15 [Pan troglodytes]
Length = 1489
Score = 40.8 bits (94), Expect = 0.032
Identities = 32/111 (28%), Positives = 46/111 (40%), Gaps = 24/111 (21%)
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRR-----------RRDPGKEIE 160
P Q P + +QQQ PP QP + + D R++ RR G +E
Sbjct: 1293 PQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVE 1352
Query: 161 RDREPPIETSHPNLHRDRDGGGMERR--GARS------RETAKRDRETMDH 203
DRE + N + DRD +RR G RS R+ +R+R + H
Sbjct: 1353 NDRE-----RYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGH 1398
Score = 35.8 bits (81), Expect = 1.0
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 94 GFLVDPKFT-VASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEP--------- 143
G L P F +A P+ P QQP+ + Q +P +P + E
Sbjct: 711 GLLPTPPFPPMAQPVIPPTPPVQQPFQA-SFQAQNEPLTQKPHQQEMEVEQPCIQEVKRH 769
Query: 144 RKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERR--GARSRETAKRDRETM 201
+++ R R + +R R S + HR +RR RSR +RDRE
Sbjct: 770 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKE 829
Query: 202 DHHHALHLPPQIPE 215
LP PE
Sbjct: 830 RERRQKGLPQVKPE 843
>ref|XP_531540.1| PREDICTED: splicing factor, arginine/serine-rich 15 [Pan troglodytes]
Length = 1472
Score = 40.8 bits (94), Expect = 0.032
Identities = 32/111 (28%), Positives = 46/111 (40%), Gaps = 24/111 (21%)
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRR-----------RRDPGKEIE 160
P Q P + +QQQ PP QP + + D R++ RR G +E
Sbjct: 1276 PQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVE 1335
Query: 161 RDREPPIETSHPNLHRDRDGGGMERR--GARS------RETAKRDRETMDH 203
DRE + N + DRD +RR G RS R+ +R+R + H
Sbjct: 1336 NDRE-----RYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGH 1381
Score = 35.8 bits (81), Expect = 1.0
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 94 GFLVDPKFT-VASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEP--------- 143
G L P F +A P+ P QQP+ + Q +P +P + E
Sbjct: 694 GLLPTPPFPPMAQPVIPPTPPVQQPFQA-SFQAQNEPLTQKPHQQEMEVEQPCIQEVKRH 752
Query: 144 RKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERR--GARSRETAKRDRETM 201
+++ R R + +R R S + HR +RR RSR +RDRE
Sbjct: 753 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKE 812
Query: 202 DHHHALHLPPQIPE 215
LP PE
Sbjct: 813 RERRQKGLPQVKPE 826
>gb|AAH64990.1| Splicing factor, arginine/serine-rich 15 [Homo sapiens]
gi|40789229|ref|NP_065757.1| splicing factor,
arginine/serine-rich 15 [Homo sapiens]
gi|59803073|sp|O95104|SFR15_HUMAN Splicing factor,
arginine/serine-rich 15 (CTD-binding SR-like protein RA4)
Length = 1147
Score = 40.8 bits (94), Expect = 0.032
Identities = 32/111 (28%), Positives = 46/111 (40%), Gaps = 24/111 (21%)
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRR-----------RRDPGKEIE 160
P Q P + +QQQ PP QP + + D R++ RR G +E
Sbjct: 951 PQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVE 1010
Query: 161 RDREPPIETSHPNLHRDRDGGGMERR--GARS------RETAKRDRETMDH 203
DRE + N + DRD +RR G RS R+ +R+R + H
Sbjct: 1011 NDRE-----RYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGH 1056
Score = 35.8 bits (81), Expect = 1.0
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 94 GFLVDPKFT-VASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEP--------- 143
G L P F +A P+ P QQP+ + Q +P +P + E
Sbjct: 369 GLLPTPPFPPMAQPVIPPTPPVQQPFQA-SFQAQNEPLTQKPHQQEMEVEQPCIQEVKRH 427
Query: 144 RKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERR--GARSRETAKRDRETM 201
+++ R R + +R R S + HR +RR RSR +RDRE
Sbjct: 428 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKE 487
Query: 202 DHHHALHLPPQIPE 215
LP PE
Sbjct: 488 RERRQKGLPQVKPE 501
>gb|AAD09327.1| pre-mRNA splicing SR protein rA4 [Homo sapiens]
Length = 1157
Score = 40.8 bits (94), Expect = 0.032
Identities = 32/111 (28%), Positives = 46/111 (40%), Gaps = 24/111 (21%)
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRR-----------RRDPGKEIE 160
P Q P + +QQQ PP QP + + D R++ RR G +E
Sbjct: 961 PQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVE 1020
Query: 161 RDREPPIETSHPNLHRDRDGGGMERR--GARS------RETAKRDRETMDH 203
DRE + N + DRD +RR G RS R+ +R+R + H
Sbjct: 1021 NDRE-----RYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGH 1066
Score = 35.8 bits (81), Expect = 1.0
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 94 GFLVDPKFT-VASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEP--------- 143
G L P F +A P+ P QQP+ + Q +P +P + E
Sbjct: 379 GLLPTPPFPPMAQPVIPPTPPVQQPFQA-SFQAQNEPLTQKPHQQEMEVEQPCIQEVKRH 437
Query: 144 RKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERR--GARSRETAKRDRETM 201
+++ R R + +R R S + HR +RR RSR +RDRE
Sbjct: 438 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKE 497
Query: 202 DHHHALHLPPQIPE 215
LP PE
Sbjct: 498 RERRQKGLPQVKPE 511
>dbj|BAA86486.1| KIAA1172 protein [Homo sapiens]
Length = 929
Score = 40.8 bits (94), Expect = 0.032
Identities = 32/111 (28%), Positives = 46/111 (40%), Gaps = 24/111 (21%)
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRR-----------RRDPGKEIE 160
P Q P + +QQQ PP QP + + D R++ RR G +E
Sbjct: 733 PQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVE 792
Query: 161 RDREPPIETSHPNLHRDRDGGGMERR--GARS------RETAKRDRETMDH 203
DRE + N + DRD +RR G RS R+ +R+R + H
Sbjct: 793 NDRE-----RYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGH 838
Score = 35.8 bits (81), Expect = 1.0
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 94 GFLVDPKFT-VASPIFTLNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEP--------- 143
G L P F +A P+ P QQP+ + Q +P +P + E
Sbjct: 173 GLLPTPPFPPMAQPVIPPTPPVQQPFQA-SFQAQNEPLTQKPHQQEMEVEQPCIQEVKRH 231
Query: 144 RKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERR--GARSRETAKRDRETM 201
+++ R R + +R R S + HR +RR RSR +RDRE
Sbjct: 232 MSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKE 291
Query: 202 DHHHALHLPPQIPE 215
LP PE
Sbjct: 292 RERRQKGLPQVKPE 305
>emb|CAD70375.1| probable fluconazole resistance protein [Neurospora crassa]
gi|32413306|ref|XP_327133.1| hypothetical protein
[Neurospora crassa] gi|28924997|gb|EAA34085.1|
hypothetical protein [Neurospora crassa]
Length = 633
Score = 40.4 bits (93), Expect = 0.042
Identities = 26/84 (30%), Positives = 41/84 (47%), Gaps = 2/84 (2%)
Query: 135 TTFTLSTEPRKTDKRRRRRDPGKEIERDREP-PIETSHPNLHRDRDGGGMERRGARSRET 193
+T ++ST + +RR RR G + D E P E S R + G + R G R+ T
Sbjct: 40 STSSVSTSSSEERQRRARRMSGVSTQHDLERHPTELSRIQTQRSQHSGTVGRSGTRNTRT 99
Query: 194 AKRDRETMDHHHA-LHLPPQIPEP 216
++R + + A PPQ+P+P
Sbjct: 100 SRRSEKPLPPFGAGKPYPPQLPDP 123
>ref|ZP_00506230.1| similar to Chromosome segregation ATPases [Polaromonas sp. JS666]
gi|67779903|gb|EAM39520.1| similar to Chromosome
segregation ATPases [Polaromonas sp. JS666]
Length = 845
Score = 39.7 bits (91), Expect = 0.071
Identities = 35/136 (25%), Positives = 55/136 (39%), Gaps = 12/136 (8%)
Query: 71 LEPFRIWVVTATHGREKQKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHEH-RQQQQP 129
L P + GRE+++++R+ D + A P PATQ R Q
Sbjct: 473 LPPAPVVTQPVVRGREERREERRDERRDGR---AQPALPAAPATQGLIGAQPPARPGQIT 529
Query: 130 PPPQPTTFTLSTEPR--------KTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGG 181
PP T TE R + D+ R++R+ + + R P E+ R+R G
Sbjct: 530 PPALQDRSTADTEQRARREQQQLQRDQERQQREAARPQDTQRRPGEESLIQRAQRERQQG 589
Query: 182 GMERRGARSRETAKRD 197
GM +R A+R+
Sbjct: 590 GMPAASPDARTAAERN 605
>gb|EAA67748.1| hypothetical protein FG09864.1 [Gibberella zeae PH-1]
gi|46136697|ref|XP_390040.1| hypothetical protein
FG09864.1 [Gibberella zeae PH-1]
Length = 277
Score = 39.7 bits (91), Expect = 0.071
Identities = 26/79 (32%), Positives = 34/79 (42%), Gaps = 1/79 (1%)
Query: 124 RQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGM 183
R ++ P P T PRK D+R R RD +E RDR+ H + RD
Sbjct: 187 RSPRRGRSPSPRRSTRDYSPRKDDRRDRDRDYDRESRRDRDRSRSPDHRDRERD-SKDDR 245
Query: 184 ERRGARSRETAKRDRETMD 202
E R R T DR+ +D
Sbjct: 246 EDRDRRENGTNGDDRKPLD 264
>gb|AAS53180.1| AFL194Wp [Ashbya gossypii ATCC 10895] gi|45198327|ref|NP_985356.1|
AFL194Wp [Eremothecium gossypii]
Length = 1168
Score = 39.7 bits (91), Expect = 0.071
Identities = 26/106 (24%), Positives = 49/106 (45%), Gaps = 13/106 (12%)
Query: 115 QQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNL 174
QQP + + +QQQQ PQP T+P++ ++ +++ P + + PP + + P L
Sbjct: 399 QQPQSQPQQQQQQQQSQPQPQQKPQQTQPQQQQQQTQQQTPPPQ----QTPPQQQAPPTL 454
Query: 175 HRDRDGGGMERRGARSRETAKRDRETMDHHHALHLP----PQIPEP 216
+ + +++ +S + + H LP PQ PEP
Sbjct: 455 QKPKPQQSQQQQQQQSSPS-----QPQHHQQPQALPPAPLPQAPEP 495
>emb|CAB62436.1| U1 snRNP 70K protein [Arabidopsis thaliana]
gi|20334806|gb|AAM16264.1| AT3g50670/T3A5_50
[Arabidopsis thaliana] gi|14532500|gb|AAK63978.1|
AT3g50670/T3A5_50 [Arabidopsis thaliana]
gi|1354469|gb|AAD12775.1| U1 snRNP 70K protein
[Arabidopsis thaliana] gi|1255711|gb|AAD12773.1| small
nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|13633916|sp|Q42404|RU17_ARATH U1 small nuclear
ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70)
(U1-70K) gi|15229825|ref|NP_190636.1| U1 small nuclear
ribonucleoprotein 70 (U1-70k) [Arabidopsis thaliana]
Length = 427
Score = 39.3 bits (90), Expect = 0.093
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 132 PQPTTFTLSTEPRKTDKRRRRRDPGKEIERDRE------------PPIETSHPNLHRDRD 179
PQ T R ++R + R+ GKE ER RE P E H HRDRD
Sbjct: 248 PQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKH---HRDRD 304
Query: 180 GGGMER-RGARSRETAKRDRETMD 202
GG +R R +R RDR D
Sbjct: 305 QGGRDRDRDSRRDRDRTRDRGDRD 328
>pir||S28147 U1 snRNP 70K protein - Arabidopsis thaliana (fragment)
Length = 303
Score = 39.3 bits (90), Expect = 0.093
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 132 PQPTTFTLSTEPRKTDKRRRRRDPGKEIERDRE------------PPIETSHPNLHRDRD 179
PQ T R ++R + R+ GKE ER RE P E H HRDRD
Sbjct: 141 PQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKH---HRDRD 197
Query: 180 GGGMER-RGARSRETAKRDRETMD 202
GG +R R +R RDR D
Sbjct: 198 QGGRDRDRDSRRDRDRTRDRGDRD 221
>gb|EAA58938.1| hypothetical protein AN4270.2 [Aspergillus nidulans FGSC A4]
gi|67528122|ref|XP_661874.1| hypothetical protein
AN4270_2 [Aspergillus nidulans FGSC A4]
gi|49093892|ref|XP_408407.1| hypothetical protein
AN4270.2 [Aspergillus nidulans FGSC A4]
Length = 1484
Score = 39.3 bits (90), Expect = 0.093
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 109 TLNPATQQPYNLHEHRQQQQPPPPQPT--TFTLSTE-PRKTDKRRRRRDPGKEIERDREP 165
T P TQ H QQQQPPPP PT FT S RKT R D E D E
Sbjct: 1264 TQMPDTQSTNPFHRLAQQQQPPPPPPTQPAFTGSAPLARKTRARPEADDDWSAAESDFES 1323
Query: 166 PIETSHPNLHRDRDGGGMERR 186
+ DR GGG ++
Sbjct: 1324 SDDED------DRAGGGSAKQ 1338
>gb|EAA47458.1| hypothetical protein MG02701.4 [Magnaporthe grisea 70-15]
gi|39970469|ref|XP_366625.1| hypothetical protein
MG02701.4 [Magnaporthe grisea 70-15]
Length = 1112
Score = 39.3 bits (90), Expect = 0.093
Identities = 27/92 (29%), Positives = 36/92 (38%), Gaps = 1/92 (1%)
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDRE-PPIETS 170
PA N Q PPPP P + EP +R RD E R RE P +
Sbjct: 770 PAAPSETNPQPAAQSAAPPPPPPKEMPVRREPSPERRRTSARDISAERRRPRENSPARRA 829
Query: 171 HPNLHRDRDGGGMERRGARSRETAKRDRETMD 202
P RD D M++ G+ ++ K + D
Sbjct: 830 SPPSQRDDDVEFMDQSGSVVQQRDKNAGGSFD 861
Score = 33.5 bits (75), Expect = 5.1
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 65 GLLLGLLEPFRIWVVTATHG--REKQKQQRQGFLVDPKFTVASPIFTLNPATQQPYNLHE 122
G+ GL + R+ + T G RE Q ++ G L P SP+ + + +P +L++
Sbjct: 298 GISSGLYDQSRVPISPLTSGFPRESQSRRLSGSLEVPN----SPLRHRSNSRTRPVSLYQ 353
Query: 123 HRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERD 162
+++ PP Q T R+ ++ RR ++ RD
Sbjct: 354 EEERRPSPPDQHPTHHHRGRGREDEQHVRRESRDRDNGRD 393
>emb|CAB64866.1| SF1 protein [Caenorhabditis elegans] gi|14530600|emb|CAB55136.2|
Hypothetical protein Y116A8C.32 [Caenorhabditis elegans]
gi|17544462|ref|NP_503033.1| splicing factor SF1, with
an N-terminal RS domain, a KH domain and a zinc knuckle
(75.3 kD) (4S48) [Caenorhabditis elegans]
Length = 699
Score = 38.9 bits (89), Expect = 0.12
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 130 PPPQ---PTTFTLSTEPRKTDKRR-----RRRDPGKEIERDREPPIETSHPNLHRDRDGG 181
PPP PT ++S+ K+ R R+RD + +RDR+ + + RDR
Sbjct: 35 PPPALVVPTISSMSSGDNKSPSRSESVSDRKRDRSRSRDRDRKKDRKKKDRSRERDR--- 91
Query: 182 GMERRGARSRETAKRDRETMDHHHALHLPP 211
ERR +RSR + RDR+ PP
Sbjct: 92 --ERRSSRSRSRSPRDRDRERRRRRSRSPP 119
Score = 33.1 bits (74), Expect = 6.7
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 144 RKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERRGARSRETAKRDRETMDH 203
R D+++ R+ + ERDRE S RDRD RR +RS +R R D
Sbjct: 72 RDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRE-RRRRRSRSPPPRRRSRSGGDR 130
Query: 204 HHALHLPPQI 213
PP +
Sbjct: 131 RRRERSPPSM 140
>gb|EAK86269.1| hypothetical protein UM04814.1 [Ustilago maydis 521]
gi|49077040|ref|XP_402429.1| hypothetical protein
UM04814.1 [Ustilago maydis 521]
Length = 682
Score = 38.9 bits (89), Expect = 0.12
Identities = 27/94 (28%), Positives = 39/94 (40%), Gaps = 7/94 (7%)
Query: 121 HEHRQQQQPPPPQPTTFTLSTEPRKTDKR---RRRRDPGKEIERDR-EPPIETSHPNLHR 176
H R + PPP+P ++ PR +R R R+ + E +R + +E R
Sbjct: 176 HARRMHKAIPPPRPWDYSRRPPPRNEQERAELEREREAWEAKEEERYQQRMEERQRERQR 235
Query: 177 DRDGGGMERRGARSRETAKRDRETMDHHHALHLP 210
+ D G GA R+ RD E D A H P
Sbjct: 236 EWDRSGYSAYGASGRD---RDAEAYDRDRARHAP 266
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,287,791
Number of Sequences: 2540612
Number of extensions: 22818766
Number of successful extensions: 102405
Number of sequences better than 10.0: 483
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 454
Number of HSP's that attempted gapping in prelim test: 100444
Number of HSP's gapped (non-prelim): 1586
length of query: 237
length of database: 863,360,394
effective HSP length: 124
effective length of query: 113
effective length of database: 548,324,506
effective search space: 61960669178
effective search space used: 61960669178
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0010.17