BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.11
(1573 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 932 0.0
gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein ... 890 0.0
gb|AAT85031.1| putative polyprotein [Oryza sativa (japonica cult... 882 0.0
ref|NP_915223.1| putative rice retrotransposon retrofit gag/pol ... 879 0.0
gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T... 871 0.0
ref|XP_470329.1| putative copia-like retrotransposon protein [Or... 863 0.0
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 833 0.0
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 832 0.0
gb|AAC02669.1| polyprotein [Arabidopsis thaliana] 831 0.0
gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana] 831 0.0
gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis ... 803 0.0
gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cult... 802 0.0
gb|AAC02672.1| polyprotein [Arabidopsis arenosa] gi|7522104|pir|... 792 0.0
emb|CAB81170.1| retrotransposon like protein [Arabidopsis thalia... 792 0.0
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 787 0.0
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 785 0.0
gb|AAK51235.1| polyprotein [Arabidopsis thaliana] 785 0.0
ref|XP_475911.1| putative polyprotein [Oryza sativa (japonica cu... 770 0.0
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 769 0.0
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 733 0.0
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 932 bits (2409), Expect = 0.0
Identities = 589/1586 (37%), Positives = 834/1586 (52%), Gaps = 220/1586 (13%)
Query: 35 KLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDADRVNSVE--NPAFLVWEQQ 92
KL +NFL W++ V ++ + L ++ E P ++ V+ V NP + +W++Q
Sbjct: 6 KLTSTNFLMWRRQVHALLDGYDLAGYVDGSIEEPHTTVT----VHGVTSPNPEYKLWKRQ 61
Query: 93 DSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSK 152
D +++ L+ ++S +V P + S QIW ++D + S Q+R +++ KGS+
Sbjct: 62 DKLIYSGLIGAISVAVQPLLSQATTSAQIWRKLVDTYANPSRGHKQQIREQIKQWKKGSR 121
Query: 153 NTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTSREFPCSISQAE 212
+ DY+ + + + L + + + + + + I GL +DY ++ + R+ SI++
Sbjct: 122 SIDDYVLGLTTRFDQLALLEEAIPHEDQIAYILGGLSDDYRRVIDQIEGRDISPSITELH 181
Query: 213 AMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLVPSQSPAPPQAPPPVAI 272
+I E +L QA P STP +
Sbjct: 182 EKLINFELKL------------------QAMVPDSSTPVTANAASYNNNN---------- 213
Query: 273 APPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGGYNNRGRGGDRS 332
+ N S G+ + ++ +SRS NNRG G+G Y R
Sbjct: 214 ---NGRNNRSSSRGNQNNQWQQNQTQQSRS---------NNRGSQGKG-YQGR------- 253
Query: 333 SVQCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQFGY 392
CQIC +GH A C SQ
Sbjct: 254 ---CQICGVHGHSARRC------------SQ----------------------------- 269
Query: 393 SPFRGFQPYGAPSQFGMSFPNSGFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAPAPQI 452
FQPYG GSG G P GY G+ P AP
Sbjct: 270 -----FQPYG--------------GSG-----GSQSVPSGYPTN---GYSPSPMAPWQ-- 300
Query: 453 RAPHAMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIG 512
P A +A+AP W DSGATHH+T D + +S TG ++V + +G GLPI G
Sbjct: 301 --PRANIATAPP-FNPWVLDSGATHHLTSDLANLSMHQPYTGGEEVTIADGSGLPISHTG 357
Query: 513 SASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKT 572
SA +P +L LK++L VPN++KNL+SV + N V EF P H V +T
Sbjct: 358 SALLPTP---SRSLALKDILYVPNVSKNLISVYRLCNANQVSVEFFPAHFQVKDLNTGAR 414
Query: 573 LLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTA 632
LL+G ++ LY + PV+ ASP+ T +S+
Sbjct: 415 LLQGRTRNE-LYEW---------------PVNQKSITILTASPSPKTDLSS--------- 449
Query: 633 YDLWHSRLGHPHYEALQSALTTCKIPVPHK-SKYTICHSCCVAKSHRLPSSASSTLYTAP 691
WH RLGHP L+ ++ +P+ + K C C + KSH+LP ++ + + P
Sbjct: 450 ---WHQRLGHPALPILKDVVSHFHLPLSNTIPKQLPCSDCSINKSHKLPFFTNTIVSSQP 506
Query: 692 LELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKF 751
LE ++ D+W I S Y Y+L VD F+R+TW+Y LK+KS+ VF+ F+A+VE +F
Sbjct: 507 LEYLYTDVWTSPCI-SVDNYKYYLVIVDHFTRYTWMYPLKQKSQVKDVFVAFKALVENRF 565
Query: 752 GLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLAC 811
+I+++ +D G EF L P GI+H + PHT NG ERKHRHIVETGL+LL
Sbjct: 566 QSRIRTLYSDNGGEFIGLRPFLAAHGISHLTSPPHTPEHNGLAERKHRHIVETGLALLTH 625
Query: 812 ANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPY 871
A++P ++W +AF TA +LINR+PT VL SPY KLF++ +Y LRVFG CYP LRPY
Sbjct: 626 ASLPKTFWTYAFATAVYLINRMPTEVLQGTSPYVKLFQMSPNYLKLRVFGCLCYPWLRPY 685
Query: 872 NSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPAS 930
N++KL RS CVFLGYS + Y CL + RIY S+ VQF E FP+++ +SE ++
Sbjct: 686 NTNKLEARSTMCVFLGYSLTQSAYLCLDIATNRIYTSRHVQFVESSFPFASPRTSETDST 745
Query: 931 NPSS---VSSVIPVISYVPSLQQPIPSP----HHSHPTGISSPNSVDSLQSMPNSPVHSA 983
S ++VIP++ P + P P HS P SSP S S + +P + S+
Sbjct: 746 QTMSQPTTTNVIPLLQRPPHIAPPTALPLCPIFHSPPHSPSSPASPPS-EHVPLTAASSS 804
Query: 984 ATVSEHPAASGTVSPNAVSSTSSSDHFA--------------------SASSIPATTTGS 1023
+ S T + TS S H S +S P T+ +
Sbjct: 805 SNAINDDNISSTGQVSVSGPTSQSPHTTPTNQNTSPLSKSPNPTNTNQSQNSTPPTSPTT 864
Query: 1024 SQ----------------PQQVTNVHPMQTRAKSGIVKPRL---LPTLLLAQAE--PVTT 1062
S P N HPM+TRAK+ I KP+ L T L + P T
Sbjct: 865 SVHQHSPTPSPLPQNPPLPPPPQNDHPMRTRAKNQITKPKTKFNLTTSLTSSKPTIPTTV 924
Query: 1063 KHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKAR 1122
ALKDP W AM E +A M N+TW LV+ + +H I CKW+F +K N DGS+ RYKAR
Sbjct: 925 AQALKDPNWRNAMSEEINAQMKNHTWDLVSPEEAKHVISCKWIFTLKYNVDGSIARYKAR 984
Query: 1123 LVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVY 1182
LVA+G++Q G DY+ETFSPV+K TIR +L +AV + W IHQ+D+NNAFL G L EEVY
Sbjct: 985 LVARGFNQQYGIDYSETFSPVIKSTTIRTVLEVAVKRNWSIHQVDINNAFLQGTLNEEVY 1044
Query: 1183 MQQPAGFQNSDK-TLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHN 1241
+ QP GF + D+ + VC+LNKALYGLKQAPRAW+ L+ L++ GF S D SLF ++
Sbjct: 1045 VSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNSLADASLFIYNR 1104
Query: 1242 KSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLL 1301
+ +Y+LVYVDDIII G +Q L S F+LK LG L YFLG++ R L
Sbjct: 1105 HNTFMYVLVYVDDIIIAGE-NALVQAFNASLASRFSLKDLGPLSYFLGIEATR-TSRGLH 1162
Query: 1302 LTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTR 1361
L Q KYI DLL++ +M + K +STPM +LS D T YR+++G+LQY TR
Sbjct: 1163 LMQRKYITDLLKKHNMLDTKPVSTPMSPTPKLSLLSGTALDDATEYRTVLGSLQYLAFTR 1222
Query: 1362 PEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDAD 1421
P+I+F+VN++ QF+ +P EHW+A KRILRYL GT HG+ +R +P+++ A+ DAD
Sbjct: 1223 PDIAFAVNRLSQFMHRPTNEHWQAAKRILRYLAGTKSHGIFLRS---DTPLTIHAFSDAD 1279
Query: 1422 WGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQ 1481
WG D D ST+ V+FG + V+W+SKKQ VARSSTEAEYR++ANT++EL W+ SLL
Sbjct: 1280 WGCDLDAYLSTNAYIVYFGGSPVSWSSKKQRSVARSSTEAEYRAVANTASELRWLCSLLL 1339
Query: 1482 ELQV-PFTVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVD 1540
E+ + TVP ++CDN+GA L NPV H+R KH+ LD FVR +Q+ +L V HV + D
Sbjct: 1340 EMGISQTTVPVIYCDNIGATYLCANPVFHSRMKHVALDYHFVRGYIQSGALRVSHVSTKD 1399
Query: 1541 QIADIFTKALSPTRFEDLRSKLNVRE 1566
Q+AD TK L RF +L SK+ V+E
Sbjct: 1400 QLADALTKPLPRPRFTELNSKIGVQE 1425
>gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
gi|7444442|pir||T02087 gag/pol polyprotein - maize
retrotransposon Hopscotch
Length = 1439
Score = 890 bits (2299), Expect = 0.0
Identities = 508/1154 (44%), Positives = 699/1154 (60%), Gaps = 94/1154 (8%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
W+ D+GAT H+T D ++ TG DQ+ NG G+ I +IG+A + + +L L
Sbjct: 323 WYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPT---SSRSLHL 379
Query: 529 KNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDG 588
+++L VP+ KNL+SV + DN V+ EFH H + + T LL G DGLY
Sbjct: 380 RSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKC-RDGLYPLPP 438
Query: 589 MHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
P + + FS S VP + WH RLGHP + +
Sbjct: 439 H---------PDLRLKHNFS---------------STRVP----LEHWHKRLGHPSRDIV 470
Query: 649 QSALTTCKIP-VPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIES 707
++ +P + + S ++C +C AK+H+LP + S + +APL LIF+D++GPA I+S
Sbjct: 471 HRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPA-IDS 529
Query: 708 SAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEFK 767
Y Y+++ +D +S+FTWIYLL+ KS+ F +FQ +VE FG KI + Q+D G E++
Sbjct: 530 FGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYE 589
Query: 768 PLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTAT 827
L HF +GI H+++CPHTH QNG+ ERKHRHIVE GL+LLA ++MP YWDHAFL A
Sbjct: 590 KLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAV 649
Query: 828 FLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLG 887
+LINR P+ + + +P HKL DY LR+FG AC+P+LRPYN KL FRS CVFLG
Sbjct: 650 YLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLG 709
Query: 888 YSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTL-------FSSEF------------ 927
YS+ HKG+KCL S GRIYIS+DV F+E FP+++L ++SE
Sbjct: 710 YSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNM 769
Query: 928 ---PASNPSSVSSVIPVIS-YVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSA 983
A+N SS +P ++ + +P+ S+ T ++ P S + S+P + V S+
Sbjct: 770 LTDHANNLPGSSSPLPFLAQHFLQGNSEVPT---SNNTAMALPASGPNEVSVPPALVPSS 826
Query: 984 ATVSEHPAASGTVSPNA-----VSSTSSSDHFA--SASSIP-----ATTTGSSQPQQVTN 1031
+ PA +G VS NA S SS A S + +P GSS Q +
Sbjct: 827 LVPAASPAPTG-VSANAEPAPEADSLSSGPPVATESVTGVPDADPLLQAPGSSVAHQTPD 885
Query: 1032 VHPM-----QTRAKSGIVKPRLLP--TLLLAQA-----EPVTTKHALKDPTWMAAMKSEY 1079
P+ +TR + GI KP+ T+ A EP + AL DP W AAM++E+
Sbjct: 886 SAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEF 945
Query: 1080 DALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAET 1139
AL NNTWTLV + R+ I CKWVF++K NADGS++R KARLVAKG+ Q G DY +T
Sbjct: 946 QALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDT 1005
Query: 1140 FSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGF-QNSDKTLVC 1198
FSPVVK TIRL+L+LAVS++W + QLDV NAFLHG L+E VYM+QP GF + C
Sbjct: 1006 FSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHC 1065
Query: 1199 KLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIIT 1258
L K+LYGLKQ PRAW+ RL L GF S D SLF ++ S IYILVYVDDIIIT
Sbjct: 1066 HLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIIT 1125
Query: 1259 GNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDLLERADMA 1318
G+ I V+ KL +FA+K LG L YFLG++VH D LLL Q KY DLL+R M
Sbjct: 1126 GSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGD-GLLLCQEKYARDLLKRVGME 1184
Query: 1319 EAKGISTPMVSGARLSKHGADYFS--DPTLYRSIVGALQYATLTRPEISFSVNKVCQFLS 1376
K + TP+ + +LS S + T YRS+VGALQY TLTRP++S+++N+VCQFL
Sbjct: 1185 CCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLH 1244
Query: 1377 QPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSC 1436
P + HW AVKRILR ++ TI GL IRP + L A+ DADW PDDR+ST G
Sbjct: 1245 APTDLHWTAVKRILRNIQHTIGLGLTIRP---SLSLMLSAFSDADWAGCPDDRKSTGGYA 1301
Query: 1437 VFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPFT-VPKVFCD 1495
+F GPNL++W SKKQ+ V+RSSTEAEY+++AN +AE++W+QSLL EL + T +P+++CD
Sbjct: 1302 LFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCD 1361
Query: 1496 NMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRF 1555
N+GA L+ P+ + RTKH+E+D FVR++V ++ L + + + DQ+AD FTKAL+ R
Sbjct: 1362 NLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALTIGRL 1421
Query: 1556 EDLRSKLNVREKLV 1569
+ R + R ++
Sbjct: 1422 NEFRRQSQPRSVVI 1435
Score = 125 bits (313), Expect = 1e-26
Identities = 95/353 (26%), Positives = 156/353 (43%), Gaps = 56/353 (15%)
Query: 1 MAEEASPTQIPTPTPISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSF 60
MA ++S + PT ++ + + KL N+L WK V +R +L
Sbjct: 1 MAMQSSLSTSAIPTSFAIPVSE------------KLTKGNYLLWKAQVLPAIRAAQLDDI 48
Query: 61 LLHQPEIPPRFLSDA-DRVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSW 119
L PP+ +SDA DR +V NPA+ W +D A+ +LLSSLS VL +VVNC S
Sbjct: 49 LTGVEICPPKTISDASDRTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNCSTSA 108
Query: 120 QIWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYRE 179
+W + + + +HS A+ R L + KG+ + ++Y +++ + L + G P+ E
Sbjct: 109 SVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKPLDDEE 168
Query: 180 HLEAIFDGLPEDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFL 239
+ + GL ED++ L+T V +R P + ++++E R+ H + S+ +
Sbjct: 169 FVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRM-------HLQTGSSSLM 221
Query: 240 AQATTPPQSTPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDR 299
QS A ++P +S S R + R R
Sbjct: 222 -------------------QSSANARSPG-----------RGMSWGRSGGRGF-SRGRGR 250
Query: 300 SRSDDNRDRGGYNNRGRGGRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYR 352
R RGG+ + GRG Y+ S +CQ+C + GH A C+YR
Sbjct: 251 GRGP---SRGGFQSFGRG--NNYSGATDADTSSRPRCQVCSRVGHTALNCWYR 298
>gb|AAT85031.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1437
Score = 882 bits (2280), Expect = 0.0
Identities = 507/1161 (43%), Positives = 698/1161 (59%), Gaps = 104/1161 (8%)
Query: 468 NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLL 527
NW+ D+GAT HVT + ++ GNDQV+ +G G+ I IG++ +P L
Sbjct: 318 NWYLDTGATDHVTGELDKLTVRDKYHGNDQVHTASGAGMEISHIGNSVVKTP---SRNLH 374
Query: 528 LKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFD 587
LK++L VP KNLVS K DN + E + + +TLLRG GLY+
Sbjct: 375 LKDVLYVPKANKNLVSAYKLTSDNLAFIELYRKFFFIKDLAMRRTLLRGRCHK-GLYALP 433
Query: 588 GMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEA 647
SS+ H+ V + ++KP+ ++ WHSRLGHP Y
Sbjct: 434 SP-SSHHHQ------VKQVYGVTKPS-------------------FERWHSRLGHPSYTV 467
Query: 648 LQSALTTCKIPVPHKSKY-TICHSCCVAKSHRL--PSSASSTLYTAPLELIFADLWGPAS 704
++ + + +P S+ ++C +C AKSH+L P S S + Y PLEL+F+D+WGPA
Sbjct: 468 VEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSFPKSTSESKY--PLELVFSDVWGPAP 525
Query: 705 IESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGT 764
+S Y+++ +D +S+FTWIYLLK KSE F +FQ++VE F KI ++QTD G
Sbjct: 526 -QSVGNNKYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKIVAMQTDWGG 584
Query: 765 EFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
E++ L F K+GITH ++CPHTH QNGS ERKHRHIVE GL+LLA ++MP +W AFL
Sbjct: 585 EYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFL 644
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECV 884
+A +LINR P+ VL ++SP +L DY LRVFG AC+P+LRPYN KL FRS C
Sbjct: 645 SAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCT 704
Query: 885 FLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVIS 943
FLGYS+ HKG+KCL S GR+YIS+DV F+E +FP++ L +P+ + + I+
Sbjct: 705 FLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFTKL--------HPNVGAKLRAEIA 756
Query: 944 YVPSLQQPIPSPHHSHPTGISSPNSVD-SLQSMPNSPVHSAATVSEHPAASGTVSPNAVS 1002
VP L +P + I++P + + S ++M + +E A TVS NA +
Sbjct: 757 LVPELAASLPRGLQQISSVINTPENANVSNENMQQDSTYDNEPETETDGAPDTVSANAPA 816
Query: 1003 STSSS-------------------------------DHFASASSIP--ATTTGSSQPQQV 1029
+S S D AS SS P +T+ G + +
Sbjct: 817 ESSGSPPINEPASPFGESDSATASPASAPVNSAPHPDAAASGSSAPRGSTSQGGTPSVAI 876
Query: 1030 TNVHPM-----------QTRAKSGIVKPRLLPT------LLLAQAEPVTTKHALKDPTWM 1072
+ HP +TR +SGI K ++ +L + EP + AL++ W
Sbjct: 877 DDPHPATTVTGQEAQRPRTRLQSGIRKEKVYTDGTVKWGMLTSTGEPENLQDALQNNNWK 936
Query: 1073 AAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVK 1132
AM +EY AL+ NNTW LV +GR+ I CKWV++IK DGS++RYKARLVAKG+ Q
Sbjct: 937 CAMDAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRY 996
Query: 1133 GFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQN- 1191
G DY +TFSPVVK TIR+IL++AVS+ W + QLDV NAFLHG L+EEVYM+QP G++N
Sbjct: 997 GIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENP 1056
Query: 1192 SDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVY 1251
S VCKL+KALYGLKQAPRAW+ RL L GFK S D SLF ++ S I++L+Y
Sbjct: 1057 STPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIY 1116
Query: 1252 VDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDL 1311
VDDII+ + + ++Q L EFALK LG L YFLG++V + +L++Q KY DL
Sbjct: 1117 VDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPG-GILMSQEKYASDL 1175
Query: 1312 LERADMAEAKGISTPMVSGARLSKHGADYF--SDPTLYRSIVGALQYATLTRPEISFSVN 1369
L+R +M++ K ++TP+ + +L +D T YRSIVGALQY TLTR +I+FSVN
Sbjct: 1176 LKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVN 1235
Query: 1370 KVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDR 1429
KVCQFL P EHW AVKRILRY+K GL +R C S + + Y DADW DDR
Sbjct: 1236 KVCQFLHNPTTEHWAAVKRILRYIKQCT--GLGLRICKSSSMI-VSGYSDADWAGCLDDR 1292
Query: 1430 RSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQ-VPFT 1488
RST G V+ G NLV+W +KKQ V+RSSTEAEY++LAN +AE++W+Q+LLQEL V
Sbjct: 1293 RSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPA 1352
Query: 1489 VPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTK 1548
+ +++CDNMGA L+ NPV H RTKH+E+D FVRE+V + L V +V + DQ+AD FTK
Sbjct: 1353 MAQLWCDNMGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTK 1412
Query: 1549 ALSPTRFEDLRSKLNVREKLV 1569
AL + E+ + LN+ + ++
Sbjct: 1413 ALPVKQLENFKYNLNLGKVVI 1433
Score = 115 bits (289), Expect = 9e-24
Identities = 83/325 (25%), Positives = 135/325 (41%), Gaps = 57/325 (17%)
Query: 35 KLDDSNFLSWKQHVEGIVRTHRLQSFLL--HQPEIPPRFLSDADRVNSVENPAFLVWEQQ 92
KL SN WK + +R RL+ L QP P + ++ V NP + W
Sbjct: 21 KLGKSNHAVWKAQILATIRGARLEGHLTGDDQPPAPILRRKEGEKEVVVSNPEYEEWVAT 80
Query: 93 DSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSK 152
D + +LLSS++ +L V C+ + W + F + + A++ R L ++ KG
Sbjct: 81 DQQVLAYLLSSMTKDLLVQVATCRTAASAWSMIQGMFGSMTRARTINTRLSLSTLQKGDM 140
Query: 153 NTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTSREFPCSISQAE 212
N + Y+ +++++ + L+++G PV E + IF GL +++ +++ + R P +I +
Sbjct: 141 NITTYVGKMRALADDLMAVGKPVDDDELIGYIFAGLDDEFEPVISTIVGRPDPVTIGETY 200
Query: 213 AMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLVPSQSPAPPQAPPPVAI 272
A +I+ E RL R
Sbjct: 201 AQLISFEQRLAHRR---------------------------------------------- 214
Query: 273 APPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNN-----RGRGGRGGYNNRGR 327
+ S VN SR+ R R RS D NR RG +N RGRG G
Sbjct: 215 SGDQSSVNSASRS----RGQPQRGGSRSGGDSNRGRGAPSNGANRGRGRGNPSGGRANVG 270
Query: 328 GGDRSSVQCQICHKYGHDASVCYYR 352
GG + +CQ+C+K GH C+YR
Sbjct: 271 GGTDNRPKCQLCYKRGHTVCDCWYR 295
>ref|NP_915223.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20161626|dbj|BAB90546.1| putative rice retrotransposon
retrofit gag/pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1448
Score = 879 bits (2271), Expect = 0.0
Identities = 518/1236 (41%), Positives = 715/1236 (56%), Gaps = 128/1236 (10%)
Query: 415 GFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAPAPQIR-------------------AP 455
G G G+P GG G G G G G R P Q+ A
Sbjct: 252 GGGRGAPRGRGGGGQGRG---GHGRGTGGQDRRPTCQVCFKRGHTAADCWYRFDEDYVAD 308
Query: 456 HAMLASAPSTLG---NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIG 512
++A+A ++ G NW+ D+GAT H+T + ++ G +Q++ +G G+ I IG
Sbjct: 309 EKLVAAATNSYGIDTNWYIDTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIG 368
Query: 513 SASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKT 572
+P + L N+L VP KNL+S S+ A DN + E H ++ Q T
Sbjct: 369 HTIVHTP---SRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDV 425
Query: 573 LLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTA 632
LL G GLY +P S S +K A A +S
Sbjct: 426 LLEGKC-RHGLYP---------------IPKSFGRSTNKQALGAAKLSLSR--------- 460
Query: 633 YDLWHSRLGHPHYEALQSALTTCKIPVPHKS-KYTICHSCCVAKSHRLPSSASSTLYTAP 691
WHSRLGHP ++ ++ +P +S ++C++C AKSH+LP S+++ P
Sbjct: 461 ---WHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFP 517
Query: 692 LELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKF 751
LEL+F+D+WGPA ES Y+++ +D FS+FTWIYLLK KSE F +FQA+VE F
Sbjct: 518 LELVFSDVWGPAP-ESVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMF 576
Query: 752 GLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLAC 811
KI ++QTD G E++ L F ++GI H ++CPHTH QNGS ERKH+HI+E GLSLL+
Sbjct: 577 DRKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSY 636
Query: 812 ANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPY 871
A+MP +WD AF+ AT+LINR+P+ + N +P KLF DY LRVF C+PHL PY
Sbjct: 637 ASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPY 696
Query: 872 NSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSS----- 925
N+ KL FRS++CVFLG+S+ HKG+K L S GR+YIS+DV F+E FP+STL S+
Sbjct: 697 NTHKLQFRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPFSTLHSNAGARL 756
Query: 926 -------EFPASNPSSVSSVIPVISYVPSLQQPIPSPH-HSHPTGISS-PNSVDSLQSMP 976
P +N ++VS+ I P P+PS + S+ ++S NS Q M
Sbjct: 757 RSEILLLPSPLTNYNTVSAGGTHI-VAPVANTPLPSDNLISNAADVTSGENSAAHEQEME 815
Query: 977 N----------SPVHSAAT---VSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTT-- 1021
N + VH A V + P A + +P+ ++TS + A++ + T T
Sbjct: 816 NEQEIENVMHGNDVHGDAASGPVLDQPTADSSTAPDQGANTSDAVSGAASDAGGDTATLG 875
Query: 1022 ---------GSSQPQQV---------TNVHPM---QTRAKSGIVKPRLLPT------LLL 1054
G + Q V V P TR +SGI K ++
Sbjct: 876 AGAANGAAAGGEESQPVPPDVTGTVAATVAPASRPHTRLRSGIRKEKVYTNGTVKYGCFS 935
Query: 1055 AQAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADG 1114
+ EP K AL D W AM++EY+AL+ N+TW LV KG++ IGCKWV+++K ADG
Sbjct: 936 STGEPQNDKEALGDKNWRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADG 995
Query: 1115 SVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLH 1174
+++RYK RL+AKG+ Q G DY +TFSPVVK TIR+IL++AVS+ W + QLDV N FLH
Sbjct: 996 TLDRYKTRLIAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLH 1055
Query: 1175 GALQEEVYMQQPAGFQNSDK-TLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCD 1233
G L+EEVYMQQP GF++S K VCKLNKALYGLKQAPRAW+ RL L + GF+AS D
Sbjct: 1056 GFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKAD 1115
Query: 1234 PSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVH 1293
SLF + ++++LVYVDDII+ + +++ LN EF LK LG L YFLG++V
Sbjct: 1116 TSLFFLNKGGIIMFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVT 1175
Query: 1294 HLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYF--SDPTLYRSIV 1351
+ + ++LTQ KY D+L+R +M+ K +STP+ +L+ + +D T YRSIV
Sbjct: 1176 KVSN-GVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIV 1234
Query: 1352 GALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSP 1411
GALQY TLTRP+I++SVNKVCQFL P HW AVKRILRYL GLH+ H
Sbjct: 1235 GALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHV-----HKS 1289
Query: 1412 VSLV--AYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANT 1469
S + Y DAD DDR+ST G VF G NLV+W+++KQ V+RSSTEAEY+++ANT
Sbjct: 1290 ASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANT 1349
Query: 1470 SAELLWIQSLLQELQVPF-TVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQN 1528
+AEL+W+Q++L+EL + K++CDN+GA L+ NPV H +TKH+ +D FVRE+V
Sbjct: 1350 TAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQ 1409
Query: 1529 QSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
+ L + VPS DQ+AD FTKALS E+ + LN+
Sbjct: 1410 KLLEIDFVPSGDQVADGFTKALSARLLENFKHNLNL 1445
Score = 97.8 bits (242), Expect = 3e-18
Identities = 78/328 (23%), Positives = 133/328 (39%), Gaps = 51/328 (15%)
Query: 30 HKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDA--DRVNSVENPAFL 87
H + KL +N WK V V RL +L + P +S + + NPAF
Sbjct: 19 HSVSEKLGKANHALWKAQVSAAVHGARLLGYLNGDIKAPNAEISVTIDGKTTTKPNPAFE 78
Query: 88 VWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSI 147
WE D + +LLSSLS VL V C+ + + W + + + A++ R L +
Sbjct: 79 DWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRNIEALYSTGTRARAVNTRLALTNT 138
Query: 148 TKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTSREFPCS 207
KG+ ++Y+ +++++ + + + G P+ ++ I GL ED+S +++ + ++ P +
Sbjct: 139 KKGTMKIAEYVAKMRALCDEMAAGGRPLDEEGLVQYIIAGLNEDFSPIVSNLCNKSDPIT 198
Query: 208 ISQAEAMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLVPSQSPAPPQAP 267
+ + + ++ E LD R ST Q
Sbjct: 199 VGELYSQLVNFETLLDLYR---------------------STGQ---------------- 221
Query: 268 PPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRG---GYNN 324
+V+ G R ++ + G RGRGG G G +
Sbjct: 222 ---------GGAAFVANRGRGGGGGGGRGNNNNSDGGGGGGGRGAPRGRGGGGQGRGGHG 272
Query: 325 RGRGGDRSSVQCQICHKYGHDASVCYYR 352
RG GG CQ+C K GH A+ C+YR
Sbjct: 273 RGTGGQDRRPTCQVCFKRGHTAADCWYR 300
>gb|AAB82754.1| retrofit [Oryza longistaminata] gi|7444451|pir||T10728 probable
gag/pol polyprotein - long-staminate rice retrotransposon
retrofit
Length = 1445
Score = 871 bits (2251), Expect = 0.0
Identities = 530/1265 (41%), Positives = 721/1265 (56%), Gaps = 139/1265 (10%)
Query: 401 YGAPSQFGMSF-PNSGFGSG--------SPYASGGMFTPPGYGFGS------GYGFGLPP 445
Y + Q G +F N G G G + GG P G G GS G G G
Sbjct: 216 YRSTGQGGAAFVANRGRGGGGGGRGNNNNSGGGGGRSAPGGRGSGSQGRGGRGRGTGGQD 275
Query: 446 RAPAPQIR-------------------APHAMLASAPSTLG---NWHPDSGATHHVTHDA 483
R P Q+ A ++A+A ++ G NW+ D+GAT H+T +
Sbjct: 276 RRPTCQVCFKRGHTAADCWYRFDEDYVADEKLVAAATNSYGIDTNWYIDTGATDHITGEL 335
Query: 484 SAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVS 543
++ G +Q++ +G G+ I IG +P + L N+L VP KNL+S
Sbjct: 336 EKLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTP---SRNIHLNNVLYVPQAKKNLIS 392
Query: 544 VSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPV 603
S+ A DN + E H ++ Q T LL G GLY + +K Q
Sbjct: 393 ASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKC-RHGLYPIPKFFGRSTNK---QALG 448
Query: 604 SSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEALQSALTTCKIPVPHKS 663
++ SLS+ WHSRLGHP ++ ++ +P +S
Sbjct: 449 AAKLSLSR------------------------WHSRLGHPSLPIVKQVISRNNLPCSVES 484
Query: 664 -KYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFS 722
++C++C AKSH+LP S+++ PLEL+F+D+WGPA ES Y+++ +D FS
Sbjct: 485 VNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP-ESVGRNKYYVSFIDDFS 543
Query: 723 RFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDG-GTEFKPLLPHFLKLGITHR 781
+FTWIYLLK KSE F +FQA+VE F KI ++QTD G ++ L F ++G+
Sbjct: 544 KFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWRGGRYQKLNSFFAQIGLIIM 603
Query: 782 LTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNL 841
QNGS ERKHRHIVE GLSLL+ A+MP +WD AF+ AT+LINR+P+ + N
Sbjct: 604 CHVLTLIRQNGSAERKHRHIVEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNS 663
Query: 842 SPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCL-AS 900
+P KLF DY LRVFG AC+PHLRPYN+ KL FRS++CVFLG+S+ HKG+KCL S
Sbjct: 664 TPLEKLFNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVS 723
Query: 901 DGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVISY-----------VPSLQ 949
GR+YIS+DV F+E FP+STL S+ + P+ +Y P
Sbjct: 724 SGRVYISRDVVFDENVFPFSTLHSNAGARLRSEILLLPSPLTNYNTASAGGTHVVAPVAN 783
Query: 950 QPIPSPHH-SHPTGISS-PNSVDSLQSMPN----------SPVHSAAT---VSEHPAASG 994
P+PS + S+ ++S NS Q M N + VH A V + P A
Sbjct: 784 TPLPSDNLISNAADVTSGENSAAHEQEMENEQEIENVMHGNDVHGDAASGPVLDQPTADS 843
Query: 995 TVSPNAVSSTS------SSDHFASASSIPATTTGS-------SQPQQ-------VTNVHP 1034
+ +P+ + TS +SD +++ A S SQP Q + V P
Sbjct: 844 STAPDQGADTSDAVSGAASDAGGDTATLGAGAANSAAAGGEESQPVQPDVTGTVLATVAP 903
Query: 1035 MQ---TRAKSGIVKPRLLPT------LLLAQAEPVTTKHALKDPTWMAAMKSEYDALMSN 1085
TR +SGI K ++ + EP K AL D W AM++EY+AL+ N
Sbjct: 904 ASRPHTRLRSGIRKEKVYTDGTVKYGCFSSTGEPQNDKEALGDKNWRDAMETEYNALIKN 963
Query: 1086 NTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVK 1145
+TW LV KG++ IGCKWV++IK ADG+++RYKARLVAKG+ Q G DY +TFSPVVK
Sbjct: 964 DTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVK 1023
Query: 1146 PITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDK-TLVCKLNKAL 1204
TIR+IL++AVS+ W + QLDV NAFLHG L+EEVYMQQP GF++S K VCKL+KAL
Sbjct: 1024 AATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKAL 1083
Query: 1205 YGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPF 1264
YGLKQAPRAW+ RL LV+ GF+AS D SLF + ++++LVYVDDII+ +
Sbjct: 1084 YGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTEKA 1143
Query: 1265 IQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGIS 1324
+++ LN EFALK LG L YFLG++V + + ++LTQ KY DLL+R +M+ K +S
Sbjct: 1144 TTALLKDLNKEFALKDLGDLHYFLGIEVTKVSN-GVILTQEKYANDLLKRVNMSNCKPVS 1202
Query: 1325 TPMVSGARLSKHGADYF--SDPTLYRSIVGALQYATLTRPEISFSVNKVCQFLSQPLEEH 1382
TP+ +L+ + +D YRSIVGALQY TLTRP+I++SVNKVCQFL P H
Sbjct: 1203 TPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSH 1262
Query: 1383 WKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLV--AYCDADWGSDPDDRRSTSGSCVFFG 1440
W AVKRILRYL GLHI H S + Y DADW DDR+ST G VF G
Sbjct: 1263 WIAVKRILRYLNQCTSLGLHI-----HKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLG 1317
Query: 1441 PNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF-TVPKVFCDNMGA 1499
NLV+W+++KQ V+RSSTEAEY+++ANT+AEL+W+Q+LL+EL + K++CDN+GA
Sbjct: 1318 SNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGA 1377
Query: 1500 VALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLR 1559
L+ NPV H RTKH+E+D FVRE+V + L + VPS DQ+AD FTKALS E+ +
Sbjct: 1378 KYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFK 1437
Query: 1560 SKLNV 1564
LN+
Sbjct: 1438 HNLNL 1442
Score = 103 bits (256), Expect = 6e-20
Identities = 79/325 (24%), Positives = 134/325 (40%), Gaps = 49/325 (15%)
Query: 30 HKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDA--DRVNSVENPAFL 87
H + KL +N WK V VR RL +L + P LS + + NPAF
Sbjct: 19 HSVSEKLGKANHALWKAQVSAAVRGARLLGYLNGDIKAPDAELSVTIDGKTTTKPNPAFE 78
Query: 88 VWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSI 147
WE D + +LLSSLS VL V C+ + + W ++ + + A++ R L +
Sbjct: 79 DWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRSIEALYSTGTRARAVNTRLALTNT 138
Query: 148 TKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTSREFPCS 207
KG+ ++Y+ +++++ + + + G P+ + ++ I GL ED+S +++ + ++ P +
Sbjct: 139 KKGTMKIAEYVAKMRALGDEMAAGGHPLDEEDLVQYIIAGLNEDFSPIVSNLCNKSDPIT 198
Query: 208 ISQAEAMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLVPSQSPAPPQAP 267
+ + + ++ E LD R ST Q
Sbjct: 199 VGELYSQLVNFETLLDLYR---------------------STGQ---------------- 221
Query: 268 PPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGGYNNRGR 327
+V+ G +++ S R G G GRGG RG
Sbjct: 222 ---------GGAAFVANRGRGGGGGGRGNNNNSGGGGGRSAPGGRGSGSQGRGG-RGRGT 271
Query: 328 GGDRSSVQCQICHKYGHDASVCYYR 352
GG CQ+C K GH A+ C+YR
Sbjct: 272 GGQDRRPTCQVCFKRGHTAADCWYR 296
>ref|XP_470329.1| putative copia-like retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|40714683|gb|AAR88589.1| putative
copia-like retrotransposon protein [Oryza sativa
(japonica cultivar-group)]
Length = 1399
Score = 863 bits (2231), Expect = 0.0
Identities = 503/1176 (42%), Positives = 687/1176 (57%), Gaps = 122/1176 (10%)
Query: 455 PHAMLASAPSTLG---NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSI 511
P A+A + G NW+ D+GAT H+T++ + G D+++ +G G+ I+ I
Sbjct: 271 PDERSAAAAAAYGIDTNWYLDTGATDHITNELDKLDVREKYKGGDKIHTASGAGMEIKHI 330
Query: 512 GSASFSSPIHTQT-TLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTC 570
G S IHT T L LKN+L VP KNL+S + A DN + E H + + + T
Sbjct: 331 G----DSVIHTPTRELHLKNILHVPQAKKNLISAHRLAMDNFAFLEVHSNYFLIKDRATR 386
Query: 571 KTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSP 630
T+L+G LYS P SPA +T+
Sbjct: 387 NTILKGRC-RRRLYSL-------------------------PTSPAKQVHAATT------ 414
Query: 631 TAYDLWHSRLGHPHYEALQSALTTCKIPVPH-KSKYTICHSCCVAKSHRLPSSASSTLYT 689
++ WHSRLGHP + L+ +P +K +IC +C KSH+LP SS++ +
Sbjct: 415 PSFSRWHSRLGHPAVPIVTRVLSKNNLPCSTVANKDSICDACQKGKSHQLPYPKSSSVSS 474
Query: 690 APLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVEL 749
PLELIF+++WGPA I S G ++++ +D +S+FTW+YLLK KSE F +FQ +VE
Sbjct: 475 QPLELIFSNVWGPAPI-SVGGKKFYVSFIDDYSKFTWVYLLKHKSEVFQKFQEFQTLVER 533
Query: 750 KFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLL 809
FG KI +VQTD G E++ L F K+GI+H ++CP+ H QNGS ERKHRH++E L+LL
Sbjct: 534 FFGHKILAVQTDWGGEYQKLNTFFAKIGISHHVSCPYAHQQNGSAERKHRHLIEVALTLL 593
Query: 810 ACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLR 869
A A+MP +WD A L A +LINR P+ V+ P +LFK +Y LR+FG A +P+LR
Sbjct: 594 AHASMPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLR 653
Query: 870 PYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFS---- 924
PYN KL+FRS+ CVFLGYS+ HKG+KCL + GR+Y+S+DV F+E FP+S L S
Sbjct: 654 PYNKHKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDVTFDESIFPFSELHSNAGA 713
Query: 925 ------SEFPASNPSSVSSV-----IPVISYVPS-----------LQQPIPSPHHSHPTG 962
S P S +SS+ V++Y P+ + + I + +
Sbjct: 714 RLRAEISLLPPSLVPHLSSLGGEQNNHVLNYPPNVTDQFGEENAEIGEEIVANGEENAAA 773
Query: 963 ISSPNSVDSLQSMPNSPVHSAA---------TVSEHPAASGT--------------VSPN 999
+ N+ + VH A V++ AS SP
Sbjct: 774 AADENAAAAANGGAQDDVHGVAYDASPEHSSPVTDDAMASAAEQHGNPIQEEHLVQASPQ 833
Query: 1000 AVSSTSSSDHFASASSIPATTTGSSQPQQ------VTNVHPMQTRAKSGIVKPRLLPTLL 1053
SSTS S ++ TT S Q Q V + P +TR +SGI K + L
Sbjct: 834 TASSTSPSVASSAGVHDDVTTDQSDQTDQAMPEAAVAPIRP-KTRLQSGIRKEKSL---- 888
Query: 1054 LAQAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENAD 1113
E V KH W AM +EY AL+ N TW LV KGR+ I CKWV+++K AD
Sbjct: 889 ---EEAVNNKH------WKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKAD 939
Query: 1114 GSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFL 1173
GS++RYKARLVAKG+ Q G DY +TFSPVVK TIR++L+LAVS+ W + QLDV NAFL
Sbjct: 940 GSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFL 999
Query: 1174 HGALQEEVYMQQPAGFQ-NSDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCC 1232
HG L+EEVYM+QP G++ S VCKL+KALYGLKQAPRAW+ RL L + GF S
Sbjct: 1000 HGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKA 1059
Query: 1233 DPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQV 1292
D SLF + I++L+YVDDII+ + ++Q+L+ +FALK LG L YFLG++V
Sbjct: 1060 DTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEV 1119
Query: 1293 HHLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYF--SDPTLYRSI 1350
H ++D L+L+Q KY DLL R M E K +STP+ + +LS + D T YRS+
Sbjct: 1120 HKVKD-GLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSV 1178
Query: 1351 VGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHS 1410
VGALQY TLTRP+ISFS+NKVCQFL P HW AVKRILRY+K T+ GL +
Sbjct: 1179 VGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKF----CRN 1234
Query: 1411 PVSLVA-YCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANT 1469
P LV+ + DADW PDDRRST G VF GPNLV+W+++KQ V+RSS EAEY++LAN
Sbjct: 1235 PSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANA 1294
Query: 1470 SAELLWIQSLLQELQVPF-TVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQN 1528
+AE++W+Q+LLQEL V K++CDN+GA L+ NP+ H RTKH+E+D FVRE+V
Sbjct: 1295 TAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVAR 1354
Query: 1529 QSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
+ L + ++ + DQ+AD FTKA+ + E ++ LN+
Sbjct: 1355 KLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 1390
Score = 80.1 bits (196), Expect = 6e-13
Identities = 51/206 (24%), Positives = 97/206 (46%), Gaps = 6/206 (2%)
Query: 35 KLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDADRVNSVE---NPAFLVWEQ 91
KL N+ W V +R RL + P + + E NPA+ W
Sbjct: 22 KLTKGNYALWSAQVLAAIRGARLDGHITGATAAPSMEIEKTASDKTTEKIVNPAYQEWFA 81
Query: 92 QDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGS 151
D + +LLS+LS +L V + Q W+ V F A + A+S +R L + KG+
Sbjct: 82 SDQQVLGFLLSTLSRDILTQVATASTAAQAWQQVCAMFTAQTKARSLNVRLTLTNTQKGN 141
Query: 152 KNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTSREFPCSISQA 211
+ S+Y ++K++ + + S G P+ + + + +GL +D+ +++ + +R ++++
Sbjct: 142 MSISEYCGKMKALADEIASSGKPLDEEDLVAYVLNGLDDDFEPVVSAIVARNESTTMAEV 201
Query: 212 EAMVIAHEARLDRLRLRQHAASPPSA 237
+ ++ E +R LRQ AS +A
Sbjct: 202 YSQLLNFE---NRQALRQAHASANAA 224
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 833 bits (2152), Expect = 0.0
Identities = 484/1162 (41%), Positives = 668/1162 (56%), Gaps = 93/1162 (8%)
Query: 458 MLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFS 517
M+++ P GNW DSGATHH+T + + ++ G+++V + +G GLPI GSA
Sbjct: 322 MVSATPYNSGNWLLDSGATHHLTSNLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLP 381
Query: 518 SPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGS 577
+P + L LK++L VP+I KNL+SV + NGV EF P H V T LL+G
Sbjct: 382 TPTRS---LALKDVLYVPDIQKNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGK 438
Query: 578 LGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWH 637
++ LY + PV+S+ + S ASP T ++PS WH
Sbjct: 439 TKNE-LYEW---------------PVNSSIATSMFASPTPKT------DLPS------WH 470
Query: 638 SRLGHPHYEALQSALTTCKIPVPHK-SKYTICHSCCVAKSHRLPSSASSTLYTAPLELIF 696
+RLGHP L++ ++ +P+ H +C C + KSH+LP +++ + PLE ++
Sbjct: 471 ARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLY 530
Query: 697 ADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIK 756
D+W + I S Y Y+L VD ++R+TW+Y L++KS+ +FI F A+VE KF KI
Sbjct: 531 TDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMFITFTALVENKFKFKIG 589
Query: 757 SVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPT 816
++ +D G EF + GI+H T PHT NG ERKHRHIVETGL+LL+ A+MP
Sbjct: 590 TLYSDNGGEFIAMRSFLASHGISHMTTPPHTPELNGISERKHRHIVETGLTLLSTASMPK 649
Query: 817 SYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKL 876
YW +AF TA +LINR+ TPVLGN SPY KLF P +Y LR+FG C+P LRPY + KL
Sbjct: 650 EYWSYAFATAVYLINRMLTPVLGNESPYVKLFGQPPNYLKLRIFGCLCFPWLRPYTAHKL 709
Query: 877 SFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSV 935
RS CV LGYS S Y CL + GR+Y S+ VQF E FP+ST S P S+P
Sbjct: 710 DNRSVPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLS 769
Query: 936 SSVIPVISYVPSLQQPI----------PSPHH--SHPTGISSPNSVD-SLQSMPNSPVHS 982
PV VP L +P+ +PH S +S P + SL P SP+ S
Sbjct: 770 QDTRPV--SVPLLARPLTTAPPSSPSCSAPHRSPSQSENLSPPAPLQPSLSLSPTSPITS 827
Query: 983 AA---------------TVSEHPAASGTVSPNAVSSTSSSDHFASAS-----------SI 1016
+ T S P + P S S+S H +S S+
Sbjct: 828 PSLSEESLVGHNSETGPTGSSPPLSPQPQRPQPQSPQSTSPHSSSPQPNSPNPQHSPRSL 887
Query: 1017 PATTTGSSQPQQVTNVHP------MQTRAKSGIVKPRLLPTLLLAQAEPV------TTKH 1064
T T S P N +P M+TR+K+ IVKP L + P+ T
Sbjct: 888 TPTLTSSPSPSPPPNPNPPPIQHTMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVVE 947
Query: 1065 ALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLV 1124
AL DP W AM E +A N T+ LV ++ +GCKWVF +K ++G ++RYKARLV
Sbjct: 948 ALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARLV 1007
Query: 1125 AKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQ 1184
AKG+HQ G D+ ETFSPV+K T+R +L +AVSK W I Q+DVNNAFL G L +EVY+
Sbjct: 1008 AKGFHQQYGHDFKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVT 1067
Query: 1185 QPAGFQNSDKT-LVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKS 1243
QP GF + D VC+L KALYGLKQAPRAW+ L++ L+ GF S D SLFT ++
Sbjct: 1068 QPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNSVADTSLFTLRHER 1127
Query: 1244 NVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLT 1303
++Y+LVYVDD++ITG+ I + L + F+LK LG++ YFLG++ + L L
Sbjct: 1128 TILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATR-TSKGLHLM 1186
Query: 1304 QTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPE 1363
Q +Y+ DLLE+ +M A + TPM +LS P+ YR+++G+LQY TRP+
Sbjct: 1187 QKRYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPD 1246
Query: 1364 ISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWG 1423
I+++VN++ Q++ P + HW+A KRILRYL GT HG+ IR +P++L AY DADW
Sbjct: 1247 IAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIR---ADTPLTLHAYSDADWA 1303
Query: 1424 SDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQEL 1483
D D+ ST+ ++ G N ++W+SKKQ VARSSTEAEYR++AN ++E+ W+ SLL EL
Sbjct: 1304 GDIDNYNSTNAYILYLGSNPISWSSKKQKGVARSSTEAEYRAVANATSEIRWVCSLLTEL 1363
Query: 1484 QVPFTVPK-VFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQI 1542
+ + P V+CDN+GA L+ NPV H+R KH+ LD FVRE VQ +L V HV + DQ+
Sbjct: 1364 GITLSSPPVVYCDNVGATYLSANPVFHSRMKHIALDFHFVRESVQAGALRVTHVSTKDQL 1423
Query: 1543 ADIFTKALSPTRFEDLRSKLNV 1564
AD TK L F L SK+ V
Sbjct: 1424 ADALTKPLPRQPFTTLISKIGV 1445
Score = 108 bits (271), Expect = 1e-21
Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 56/371 (15%)
Query: 1 MAEEASPTQIPTPTPISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSF 60
M++ SP + I+V+ L + ++ + + +L DSNF+ W + V ++ + L +
Sbjct: 1 MSDSTSPVSVSET--IAVSTSTLLNVNMTN--VTRLTDSNFVMWSRQVHALLDGYDLAGY 56
Query: 61 LLHQPEIPPRFLSDADRVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQ 120
+ IP + AD V + N + +W++QD +++ LL ++S SV P + S +
Sbjct: 57 VDGSIPIPTPTRTTADGVVTTNND-YTLWKRQDKLIYSALLGAISLSVQPLLSKANTSAE 115
Query: 121 IWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREH 180
IWE + F S A QLR +L+ TKG+K+ Y + + + L +G E
Sbjct: 116 IWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSIVTYFQGFTTRFDHLALLGKAPEREEQ 175
Query: 181 LEAIFDGLPEDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFLA 240
+E I GLPEDY ++ + RE P ++++ +I HE +L A A
Sbjct: 176 IELILGGLPEDYKTVVDQIEGRENPPALTEVLEKLINHEVKL--------------AAKA 221
Query: 241 QATTPPQSTPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRS 300
+AT+ P + N V+ G+++ R + R+
Sbjct: 222 EATSVPVT------------------------------ANAVNYRGNNNNNNNSRSNGRN 251
Query: 301 RSDDNRDRGGYNNRGRGGRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYRGNSTSPAT 360
S N N++ R Y R G +CQIC +GH A C
Sbjct: 252 NSRGN--TSWQNSQSTSNRQQYTPRPYQG-----KCQICSVHGHSARRCPQLQQHAGSYA 304
Query: 361 NSQPNMTNQAP 371
++Q + + AP
Sbjct: 305 SNQSSSASYAP 315
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 832 bits (2148), Expect = 0.0
Identities = 484/1162 (41%), Positives = 667/1162 (56%), Gaps = 93/1162 (8%)
Query: 458 MLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFS 517
M+++ P GNW DSGATHH+T D + ++ G+++V + +G GLPI GSA
Sbjct: 322 MVSATPYNSGNWLLDSGATHHLTSDLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLP 381
Query: 518 SPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGS 577
+P + L LK++L VP+I KNL+SV + NGV EF P H V T LL+G
Sbjct: 382 TPTRS---LALKDVLYVPDIQKNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGK 438
Query: 578 LGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWH 637
++ LY + PV+S+ + S ASP T ++PS WH
Sbjct: 439 TKNE-LYEW---------------PVNSSIATSMFASPTPKT------DLPS------WH 470
Query: 638 SRLGHPHYEALQSALTTCKIPVPHK-SKYTICHSCCVAKSHRLPSSASSTLYTAPLELIF 696
+RLGHP L++ ++ +P+ H +C C + KSH+LP +++ + PLE ++
Sbjct: 471 ARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLY 530
Query: 697 ADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIK 756
D+W + I S Y Y+L VD ++R+TW+Y L++KS+ +FI F A+VE KF KI
Sbjct: 531 TDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMFITFTALVENKFKFKIG 589
Query: 757 SVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPT 816
++ +D G EF + GI+H T PHT NG ERKHRHIVETGL+LL+ A+MP
Sbjct: 590 TLYSDNGGEFIAMRSFLASHGISHMTTPPHTPELNGISERKHRHIVETGLTLLSTASMPK 649
Query: 817 SYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKL 876
YW +AF TA +LINR+ TPVLGN SPY KLF P +Y LR+FG C+P LRPY + KL
Sbjct: 650 EYWSYAFATAVYLINRMLTPVLGNESPYVKLFGQPPNYLKLRIFGCLCFPWLRPYTAHKL 709
Query: 877 SFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSV 935
RS CV LGYS S Y CL + GR+Y S+ VQF E FP+ST S P S+P
Sbjct: 710 DNRSVPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLS 769
Query: 936 SSVIPVISYVPSLQQPI----------PSPHH--SHPTGISSPNSVD-SLQSMPNSPVHS 982
PV VP L +P+ +PH S +S P + SL P SP+ S
Sbjct: 770 QDTRPV--SVPLLARPLTTAPPSSPSCSAPHRSPSQSENLSPPAPLQPSLSLSPTSPITS 827
Query: 983 AA---------------TVSEHPAASGTVSPNAVSSTSSSDHFASAS-----------SI 1016
+ T S P + P S S+S H +S S+
Sbjct: 828 PSLSEESLVGHNSETGPTGSSPPLSPQPQRPQPQSPQSTSPHSSSPQPNSPNPQHSPRSL 887
Query: 1017 PATTTGSSQPQQVTNVHP------MQTRAKSGIVKPRLLPTLLLAQAEPV------TTKH 1064
T T S P N +P M+TR+K+ IVKP L + P+ T
Sbjct: 888 TPTLTSSPSPSPPPNPNPPPIQHTMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVVE 947
Query: 1065 ALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLV 1124
AL DP W AM E +A N T+ LV ++ +GCKWVF +K ++G ++RYKARLV
Sbjct: 948 ALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARLV 1007
Query: 1125 AKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQ 1184
AKG+HQ G D+ ETFSPV+K T+R +L +AVSK W I Q+DVNNAFL G L +EVY+
Sbjct: 1008 AKGFHQQYGHDFKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVT 1067
Query: 1185 QPAGFQNSDKT-LVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKS 1243
QP GF + D VC+L KALYGLKQAPRAW+ L++ L+ GF S D SLFT ++
Sbjct: 1068 QPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNSVADTSLFTLRHER 1127
Query: 1244 NVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLT 1303
++Y+LVYVDD++ITG+ I + L + F+LK LG++ YFLG++ + L L
Sbjct: 1128 TILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATR-TSKGLHLM 1186
Query: 1304 QTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPE 1363
Q +Y+ DLLE+ +M A + TPM +LS P+ YR+++G+LQY TRP+
Sbjct: 1187 QKRYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPD 1246
Query: 1364 ISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWG 1423
I+++VN++ Q++ P + HW+A KRILRYL GT HG+ IR +P++L AY DADW
Sbjct: 1247 IAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIR---ADTPLTLHAYSDADWA 1303
Query: 1424 SDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQEL 1483
D D+ ST+ ++ G N ++W+SKKQ VARSSTEAEYR++AN ++E+ W+ SLL EL
Sbjct: 1304 GDIDNYNSTNAYILYLGSNPISWSSKKQKGVARSSTEAEYRAVANATSEIRWVCSLLTEL 1363
Query: 1484 QVPFTVPK-VFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQI 1542
+ + P V+CDN+GA L+ NPV +R KH+ LD FVRE VQ +L V HV + DQ+
Sbjct: 1364 GITLSSPPVVYCDNVGATYLSANPVFDSRMKHIALDFHFVRESVQAGALRVTHVSTKDQL 1423
Query: 1543 ADIFTKALSPTRFEDLRSKLNV 1564
AD TK L F L SK+ V
Sbjct: 1424 ADALTKPLPRQPFTTLISKIGV 1445
Score = 109 bits (272), Expect = 9e-22
Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 56/371 (15%)
Query: 1 MAEEASPTQIPTPTPISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSF 60
M++ SP + I+V+ L + ++ + + +L DSNF+ W + V ++ + L +
Sbjct: 1 MSDSTSPVSVSET--IAVSTSTLLNVNMTN--VTRLTDSNFVMWSRQVHALLDGYDLAGY 56
Query: 61 LLHQPEIPPRFLSDADRVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQ 120
+ IP + AD V + N + +W++QD +++ LL ++S SV P + S +
Sbjct: 57 IDGSIPIPTPTRTTADGVVTTNND-YTLWKRQDKLIYSALLGAISLSVQPLLSKANTSAE 115
Query: 121 IWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREH 180
IWE + F S A QLR +L+ TKG+K+ Y + + + L +G E
Sbjct: 116 IWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSIVTYFQGFTTRFDHLALLGKAPEREEQ 175
Query: 181 LEAIFDGLPEDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFLA 240
+E I GLPEDY ++ + RE P ++++ +I HE +L A A
Sbjct: 176 IELILGGLPEDYKTVVDQIEGRENPPALTEVLEKLINHEVKL--------------AAKA 221
Query: 241 QATTPPQSTPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRS 300
+AT+ P + N V+ G+++ R + R+
Sbjct: 222 EATSVPVT------------------------------ANAVNYRGNNNNNNNSRSNGRN 251
Query: 301 RSDDNRDRGGYNNRGRGGRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYRGNSTSPAT 360
S N N++ R Y R G +CQIC +GH A C
Sbjct: 252 NSRGN--TSWQNSQSTSNRQQYTPRPYQG-----KCQICSVHGHSARRCPQLQQHAGSYA 304
Query: 361 NSQPNMTNQAP 371
++Q + + AP
Sbjct: 305 SNQSSSASYAP 315
>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 831 bits (2146), Expect = 0.0
Identities = 484/1162 (41%), Positives = 667/1162 (56%), Gaps = 93/1162 (8%)
Query: 458 MLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFS 517
M+++ P GNW DSGATHH+T D + ++ G+++V + +G GLPI GSA
Sbjct: 322 MVSATPYNSGNWLLDSGATHHLTSDLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLP 381
Query: 518 SPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGS 577
+P + L LK++L VP+I KNL+SV + NGV EF P H V T LL+G
Sbjct: 382 TPTRS---LALKDVLYVPDIQKNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGK 438
Query: 578 LGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWH 637
++ LY + PV+S+ + S ASP T ++PS WH
Sbjct: 439 TKNE-LYEW---------------PVNSSIATSMFASPTPKT------DLPS------WH 470
Query: 638 SRLGHPHYEALQSALTTCKIPVPHK-SKYTICHSCCVAKSHRLPSSASSTLYTAPLELIF 696
+RLGHP L++ ++ +P+ H +C C + KSH+LP +++ + PLE ++
Sbjct: 471 ARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLY 530
Query: 697 ADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIK 756
D+W + I S Y Y+L VD ++R+TW+Y L++KS+ +FI F A+VE KF KI
Sbjct: 531 TDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMFITFTALVENKFKFKIG 589
Query: 757 SVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPT 816
++ +D G EF + GI+H T PHT NG ERKHRHIVETGL+LL+ A+MP
Sbjct: 590 TLYSDNGGEFIAMRSFLASHGISHMTTPPHTPELNGISERKHRHIVETGLTLLSTASMPK 649
Query: 817 SYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKL 876
YW +AF TA +LINR+ TPVLGN SPY KLF P +Y LR+FG C+P LRPY + KL
Sbjct: 650 EYWSYAFATAVYLINRMLTPVLGNESPYVKLFGQPPNYLKLRIFGCLCFPWLRPYTAHKL 709
Query: 877 SFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSV 935
RS CV LGYS S Y CL + GR+Y S+ VQF E FP+ST S P S+P
Sbjct: 710 DNRSVPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLS 769
Query: 936 SSVIPVISYVPSLQQPI----------PSPHH--SHPTGISSPNSVD-SLQSMPNSPVHS 982
PV VP L +P+ +PH S +S P + SL P SP+ S
Sbjct: 770 QDTRPV--SVPLLARPLTTAPPSSPSCSAPHRSPSQSENLSPPAPLQPSLSLSPTSPITS 827
Query: 983 AA---------------TVSEHPAASGTVSPNAVSSTSSSDHFASAS-----------SI 1016
+ T S P + P S S+S H +S S+
Sbjct: 828 PSLSEESLVGHNSETGPTGSSPPLSPQPQRPQPQSPQSTSPHSSSPQPNSPNPQHSPRSL 887
Query: 1017 PATTTGSSQPQQVTNVHP------MQTRAKSGIVKPRLLPTLLLAQAEPV------TTKH 1064
T T S P N +P M+TR+K+ IVKP L + P+ T
Sbjct: 888 TPTLTSSPSPSPPPNPNPPPIQHTMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVVE 947
Query: 1065 ALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLV 1124
AL DP W AM E +A N T+ LV ++ +GCKWVF +K ++G ++RYKARLV
Sbjct: 948 ALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARLV 1007
Query: 1125 AKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQ 1184
AKG+HQ G D+ ETFSPV+K T+R +L +AVSK W I Q+DVNNAFL G L +EVY+
Sbjct: 1008 AKGFHQQYGHDFKETFSPVIKLTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVT 1067
Query: 1185 QPAGFQNSDKT-LVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKS 1243
QP GF + D VC+L KALYGLKQAPRAW+ L++ L+ GF S D SLFT ++
Sbjct: 1068 QPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNSVADTSLFTLRHER 1127
Query: 1244 NVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLT 1303
++Y+LVYVDD++ITG+ I + L + F+LK LG++ YFLG++ + L L
Sbjct: 1128 TILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATR-TSKGLHLM 1186
Query: 1304 QTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPE 1363
Q +Y+ DLLE+ +M A + TPM +LS P+ YR+++G+LQY TRP+
Sbjct: 1187 QKRYVLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPD 1246
Query: 1364 ISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWG 1423
I+++VN++ Q++ P + HW+A KRILRYL GT HG+ IR +P++L AY DADW
Sbjct: 1247 IAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIR---ADTPLTLHAYSDADWA 1303
Query: 1424 SDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQEL 1483
D D+ ST+ ++ G N ++W+SKKQ VARSSTEAEYR++AN ++E+ W+ SLL EL
Sbjct: 1304 GDIDNYNSTNAYILYLGSNPISWSSKKQKGVARSSTEAEYRAVANATSEIRWVCSLLTEL 1363
Query: 1484 QVPFTVPK-VFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQI 1542
+ + P V+CDN+GA L+ NPV +R KH+ LD FVRE VQ +L V HV + DQ+
Sbjct: 1364 GITLSSPPVVYCDNVGATYLSANPVFDSRMKHIALDFHFVRESVQAGALRVTHVSTKDQL 1423
Query: 1543 ADIFTKALSPTRFEDLRSKLNV 1564
AD TK L F L SK+ V
Sbjct: 1424 ADALTKPLPRQPFTTLISKIGV 1445
Score = 108 bits (271), Expect = 1e-21
Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 56/371 (15%)
Query: 1 MAEEASPTQIPTPTPISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSF 60
M++ SP + I+V+ L + ++ + + +L DSNF+ W + V ++ + L +
Sbjct: 1 MSDSTSPVSVSET--IAVSTSTLLNVNMTN--VTRLTDSNFVMWSRQVHALLDGYDLAGY 56
Query: 61 LLHQPEIPPRFLSDADRVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQ 120
+ IP + AD V + N + +W++QD +++ LL ++S SV P + S +
Sbjct: 57 VDGSIPIPTPTRTTADGVVTTNND-YTLWKRQDKLIYSALLGAISLSVQPLLSKANTSAE 115
Query: 121 IWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREH 180
IWE + F S A QLR +L+ TKG+K+ Y + + + L +G E
Sbjct: 116 IWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSIVTYFQGFTTRFDHLALLGKAPEREEQ 175
Query: 181 LEAIFDGLPEDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFLA 240
+E I GLPEDY ++ + RE P ++++ +I HE +L A A
Sbjct: 176 IELILGGLPEDYKTVVDQIEGRENPPALTEVLEKLINHEVKL--------------AAKA 221
Query: 241 QATTPPQSTPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRS 300
+AT+ P + N V+ G+++ R + R+
Sbjct: 222 EATSVPVT------------------------------ANAVNYRGNNNNNNNSRSNGRN 251
Query: 301 RSDDNRDRGGYNNRGRGGRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYRGNSTSPAT 360
S N N++ R Y R G +CQIC +GH A C
Sbjct: 252 NSRGN--TSWQNSQSTSNRQQYTPRPYQG-----KCQICSVHGHSARRCPQLQQHAGSYA 304
Query: 361 NSQPNMTNQAP 371
++Q + + AP
Sbjct: 305 SNQSSSASYAP 315
>gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana]
Length = 1534
Score = 831 bits (2146), Expect = 0.0
Identities = 504/1260 (40%), Positives = 694/1260 (55%), Gaps = 107/1260 (8%)
Query: 355 STSPATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQFGYSPFRGFQPYGAPSQFGMSFPNS 414
S P N++ N +N G++ P+ RG+Q Q F +S
Sbjct: 326 SYRPPANNKHNNSNNYRGQNRNNNNRGANSYQQPRNDQPSSRGYQ---GKCQICGVFGHS 382
Query: 415 GFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAPAP-QIRAPHAMLASAPSTLGNWHPDS 473
SG TP + P A P Q RA A ++ P W DS
Sbjct: 383 ARRCSQLQMSGAYSTPSPSQY---------PNATVPWQPRANMAAMSYNP-----WLLDS 428
Query: 474 GATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLL 533
GATHH+T D + ++ G ++V + +G LPI GS++ S+ +L L N+L
Sbjct: 429 GATHHLTTDLNNLALHQPYNGGEEVTIADGSTLPITHTGSSTLSTQ---SRSLALNNILY 485
Query: 534 VPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSN 593
VPN+ KNL+SV K N V EF P H V T LL+G D LY +
Sbjct: 486 VPNLHKNLISVYKLCNANKVSVEFFPAHFQVKDLSTGARLLQGRT-KDELYEW------- 537
Query: 594 FHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEALQSALT 653
PV S +S ASP T +PS WHSRLGHP L+S ++
Sbjct: 538 --------PVPSNTPISLFASPTPKT------TLPS------WHSRLGHPSPPVLKSLVS 577
Query: 654 TCKIPVPHKS-KYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYS 712
+PV + S K+ C C + KSH+LP +++ + PLE +++D+W + + S +
Sbjct: 578 QFSLPVSNSSQKHFPCSHCLINKSHKLPFYSNTIISYTPLEYVYSDVW-TSPVTSVDNFK 636
Query: 713 YFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPH 772
Y+L VD ++R+TW+Y LK+KS+ F+ F+A+VE +F KI+++ +D G EF L
Sbjct: 637 YYLILVDHYTRYTWLYPLKQKSQVRETFVAFKALVENRFQTKIRTLYSDNGGEFIALRQF 696
Query: 773 FLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINR 832
L GI+H + PHT NG ERKHRHI+ETGL+LL A++PTSYW +AF TA +LINR
Sbjct: 697 LLTHGISHLTSLPHTPEHNGIAERKHRHILETGLTLLTQASIPTSYWTYAFGTAVYLINR 756
Query: 833 LPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSH 892
LP+ VL N SPY KLFK +Y LRVFG +C+P LRPY + KL RSQ CVFLGYS +
Sbjct: 757 LPSSVLNNESPYSKLFKTSPNYLKLRVFGCSCFPWLRPYTNHKLERRSQPCVFLGYSLTQ 816
Query: 893 KGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVS-------SVIPVISY 944
Y CL S GR+Y S+ VQF E +FP+S + S+P S S IP+ S
Sbjct: 817 SAYLCLDRSSGRVYTSRHVQFVEDQFPFSISDTHSVSNSSPEEASPSCHQPPSRIPIQSS 876
Query: 945 VPSLQQ------PIPSPHHSHPTGISS---------------------------PNSVDS 971
P L Q P+ S H P +S P S S
Sbjct: 877 SPPLVQAPSSLPPLSSDSHRRPNAETSSSSSSTNNDVVVSKDNTQVDNRNNFIGPTSSSS 936
Query: 972 LQSMPNSPVHSAATVSEHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTN 1031
QS NS S+ P SP+ SS + S+S+ +T + P TN
Sbjct: 937 AQSQNNSNPSSSIQTQNEP----NPSPSPTPQNSSPESSPSSSTSATSTVPNPPPPPPTN 992
Query: 1032 VHPMQTRAKSGIVKPRLLPTLLLAQAE-----PVTTKHALKDPTWMAAMKSEYDALMSNN 1086
HPM+TRAK+ I KP+ +LL + P T AL+D W AM E +A + NN
Sbjct: 993 NHPMRTRAKNHITKPKTKLSLLAKTVQTRPQIPNTVNQALRDEKWRNAMGEEINAQIRNN 1052
Query: 1087 TWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKP 1146
T+ LV ++ I KW+F +K +G+++RYKARLVA+G+ Q G Y+ETFSPVVK
Sbjct: 1053 TFELVPPKPNQNVISTKWIFTLKYLPNGTLDRYKARLVARGFRQQYGLHYSETFSPVVKS 1112
Query: 1147 ITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDKT-LVCKLNKALY 1205
+TIRL+L LAVS+ W I QLDVNNAFL G L +EVY+ QP GF + D+ VC+L KALY
Sbjct: 1113 LTIRLVLQLAVSRSWTIKQLDVNNAFLQGTLTDEVYVTQPPGFIDPDRPHHVCRLKKALY 1172
Query: 1206 GLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFI 1265
GLKQAPRAW+ L+ + GF S D S+F + N ++Y LVYVDDII+TG+ +
Sbjct: 1173 GLKQAPRAWYQELRNFVCSLGFTNSLADTSVFVYINDIQIVYCLVYVDDIIVTGSSDALV 1232
Query: 1266 QEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGIST 1325
+ L+ F+LK L YFLG++ + L L Q KY+ DLL R M +AK +ST
Sbjct: 1233 MAFITALSRRFSLKDPTDLVYFLGIEATR-TSQGLHLMQHKYVYDLLSRMKMLDAKPVST 1291
Query: 1326 PMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKA 1385
PM + +LS + +P YR+++G+LQY TRP+I+++VN++ QF+ +P + HW+A
Sbjct: 1292 PMATHPKLSLYSGIALDEPGEYRTVIGSLQYLAFTRPDIAYAVNRLSQFMHRPTDIHWQA 1351
Query: 1386 VKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVT 1445
KR+LRYL GT HG+ +R +SP+SL A+ DADW D DD ST+ V+ G +
Sbjct: 1352 AKRVLRYLAGTATHGILLRS---NSPLSLHAFSDADWAGDNDDFVSTNAYIVYLGSTPIA 1408
Query: 1446 WTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF-TVPKVFCDNMGAVALTH 1504
W+SKKQ VARSSTEAEYR++ANT++E+ W+ SLL EL + +P ++CDN+GA L+
Sbjct: 1409 WSSKKQKGVARSSTEAEYRAVANTTSEIRWVCSLLTELGITLPKMPVIYCDNVGATYLSA 1468
Query: 1505 NPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
NPV H+R KH+ LD F+R+ V +L V H+ + DQ+AD TK L F SK+ V
Sbjct: 1469 NPVFHSRMKHLALDYHFIRDNVSAGALRVSHISTHDQLADALTKPLPRQHFLQFSSKIGV 1528
Score = 108 bits (269), Expect = 2e-21
Identities = 85/349 (24%), Positives = 157/349 (44%), Gaps = 60/349 (17%)
Query: 25 STSLVHKLLL---KLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDADRVNSV 81
STSL++ + KL SNFL W++ V+ ++ + L ++ +PP ++ V
Sbjct: 113 STSLLNVNMTNVTKLTSSNFLMWRRQVQALLNGYDLTGYIDGSIVVPPATITANGAVTV- 171
Query: 82 ENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLR 141
NPAF W++QD +++ LL ++S SV P + S +IW ++D + S + QLR
Sbjct: 172 -NPAFKHWQRQDQLIYSALLGAISISVQPILSRTTTSAEIWTKLMDTYAKPSWSHIQQLR 230
Query: 142 SELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTS 201
+++ K +K+ ++ + + + L +G P+ E +E I +GL +DY ++ +
Sbjct: 231 QQIKQWKKDTKSIDEFFQGLVMRFDQLALLGKPMESEEQMEVIVEGLSDDYKQVIDQIQG 290
Query: 202 REFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLVPSQSP 261
RE P S+++ ++ HE +L Q AAS +P +
Sbjct: 291 REVPPSLTEIHEKLLNHEVKL------QAAASS---------------------LPISAN 323
Query: 262 APPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGG 321
A PP + + + ++ R ++ +N +RG N+ +
Sbjct: 324 AASYRPPA-------------------NNKHNNSNNYRGQNRNNNNRGA-NSYQQPRNDQ 363
Query: 322 YNNRGRGGDRSSVQCQICHKYGHDASVC---YYRGNSTSPATNSQPNMT 367
++RG G +CQIC +GH A C G ++P+ + PN T
Sbjct: 364 PSSRGYQG-----KCQICGVFGHSARRCSQLQMSGAYSTPSPSQYPNAT 407
>gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis thaliana]
gi|25301689|pir||C96578 hypothetical protein T18A20.5
[imported] - Arabidopsis thaliana
Length = 1522
Score = 803 bits (2075), Expect = 0.0
Identities = 469/1137 (41%), Positives = 644/1137 (56%), Gaps = 75/1137 (6%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
W PDS A+ HVT++ + G+D + + +G LPI GS S +S + + L
Sbjct: 326 WIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGSIAS---SSGKIPL 382
Query: 529 KNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDG 588
K +L+ P+I K+L+SVSK D EF +N + T K L+ G DGLYS +
Sbjct: 383 KEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGR-NRDGLYSLE- 440
Query: 589 MHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEAL 648
P + + ST N S ++WH RLGH + E L
Sbjct: 441 -------------------------EPKLQVLYSTRQNSASS---EVWHRRLGHANAEVL 472
Query: 649 QSALTTCKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESS 708
++ I + +K T+C +C + KS RLP S+ + PLE I DLWGP+ S
Sbjct: 473 HQLASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSV 532
Query: 709 AGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF-- 766
G+ Y++ +D +SRFTW Y LK KS+ + F+ FQ +VE + G KIK Q DGG EF
Sbjct: 533 QGFRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFIS 592
Query: 767 KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTA 826
L H GI ++CP+T QNG ERKHRHIVE GLS++ + +P YW +F TA
Sbjct: 593 SQFLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTA 652
Query: 827 TFLINRLPTPVL-GNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVF 885
F+IN LPT L N SPY KL+ +Y LRVFG ACYP LR Y S+K RS +CVF
Sbjct: 653 NFVINLLPTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVF 712
Query: 886 LGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVISY 944
LGY+ +KGY+CL GRIYIS+ V F+E P+ +++S P + + +
Sbjct: 713 LGYNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHH 772
Query: 945 VPSLQQ-----PIPSPHHSHPTGISS-PNSVDSLQSMPNSPVHSA------ATVSEHPAA 992
V Q P+ S T +S+ P SV + + PN+ ++ + VS P
Sbjct: 773 VTPTQPDQSRYPVSSIPQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPER 832
Query: 993 -----SGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQ---------VTNVHPMQTR 1038
S ++ + S T+ S H + A S PA++ S Q VTN H M TR
Sbjct: 833 TTGLDSASIGDSYHSPTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTR 892
Query: 1039 AKSGIVKPR---LLPTLLLAQAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPK 1095
K GI KP +L T ++ EP T ALK P W AM+ E TWTLV
Sbjct: 893 GKEGISKPNKRYVLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSP 952
Query: 1096 GRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTL 1155
+ +G WVFR K +ADGS+++ KARLVAKG+ Q +G DY ET+SPVV+ T+RLIL +
Sbjct: 953 NMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHV 1012
Query: 1156 AVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDK-TLVCKLNKALYGLKQAPRAW 1214
A +W + Q+DV NAFLHG L E VYM+QPAGF + K VC L+K+LYGLKQ+PRAW
Sbjct: 1013 ATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAW 1072
Query: 1215 FDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNS 1274
FDR L+++GF S DPSLF + + ++VI +L+YVDD++ITGN + ++ LN
Sbjct: 1073 FDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNK 1132
Query: 1275 EFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLS 1334
EF +K +GQ+ YFLG+Q+ D L ++Q KY DLL A MA + TP+
Sbjct: 1133 EFRMKDMGQVHYFLGIQI-QTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRV 1191
Query: 1335 KHGADYFSDPTLYRSIVGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLK 1394
+ + FSDPT +RS+ G LQY TLTRP+I F+VN VCQ + QP + +KRILRY+K
Sbjct: 1192 SNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIK 1251
Query: 1395 GTIHHGLHIRPCS------LHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTS 1448
GT+ G+ S S L AY D+D+ + + RRS G C F G N+++W+S
Sbjct: 1252 GTVSMGIQYNSNSSSVVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSS 1311
Query: 1449 KKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF-TVPKVFCDNMGAVALTHNPV 1507
KKQ V+RSSTEAEYRSL+ T++E+ W+ S+L+E+ V P++FCDN+ AV LT NP
Sbjct: 1312 KKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPA 1371
Query: 1508 LHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
H RTKH ++D ++RE+V ++L V H+P Q+ADIFTK+L F LR KL V
Sbjct: 1372 FHARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGV 1428
Score = 100 bits (250), Expect = 3e-19
Identities = 86/337 (25%), Positives = 142/337 (41%), Gaps = 50/337 (14%)
Query: 20 IPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDA-DRV 78
+P L+ ++ V + L+ N++ WK E + L F+ P + S + V
Sbjct: 6 VPPLNISNCV---TVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNV 62
Query: 79 NSVE-NPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQS 137
S E NP F W Q D + +WLL S + +L VVNC S Q+W + + F+ S ++
Sbjct: 63 TSEEPNPEFYTWHQTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRL 122
Query: 138 TQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHL-M 196
+L+ L+++ K +LK +K I + L S+G PV + + + +GL +Y +
Sbjct: 123 FELQRRLQTLEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGLGREYEPIKT 182
Query: 197 TIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLV 256
TI S + S+S E +A + R RL+ + P +
Sbjct: 183 TIENSVDSNPSLSLDE---VASKLRGYDDRLQSYVTEPTIS------------------- 220
Query: 257 PSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGR 316
P VA + T SD Y + + + RS+ + ++ RGR
Sbjct: 221 -----------PHVAF----------NVTHSDSGYYHNNNRGKGRSNSGSGKSSFSTRGR 259
Query: 317 GGRGGYN-NRGRGGDRSSVQCQICHKYGHDASVCYYR 352
G + G S + CQIC K GH A C++R
Sbjct: 260 GFHQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHR 296
>gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|51854440|gb|AAU10819.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1679
Score = 802 bits (2071), Expect = 0.0
Identities = 553/1555 (35%), Positives = 787/1555 (50%), Gaps = 170/1555 (10%)
Query: 89 WEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQ-IWEAVLDFFHAHSLAQSTQLRSELRSI 147
W Q D + WL ++S +L V+ + + +W + F +S ++ L +E +
Sbjct: 215 WVQMDCVVLAWLFGTISFDLLQDVLATDTTARLVWRGLEYQFLGNSEQRALNLTTEFHTF 274
Query: 148 TKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVT-SREFPC 206
+G + +Y +++K+ ++L +G+PV R + +GL E +++L ++V R FP
Sbjct: 275 QQGDLSVDEYCRKMKTFADSLGDVGEPVRDRTLVLNTLNGLSEKFNNLRSLVPMQRPFP- 333
Query: 207 SISQAEAMVIAHEARLDRLRLRQHAASPPSA-FLAQATTPPQSTPQAPPLVPSQSPAPPQ 265
+ ++ +++ RL+ L HAAS SA FLA +T
Sbjct: 334 TFAELRSLL-----RLEELSKPNHAASASSAVFLATGSTTNGGKG--------------- 373
Query: 266 APPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGGYNNR 325
A P+ Y G+ ++ + + NR R G N G GG GG N
Sbjct: 374 -------ANPAHGTGY----GAGNQG------GGGKGNSNRRRRGGNGGGGGGGGGGGNS 416
Query: 326 GRGGDRSSVQCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQ-------APAPVAPTF 378
+GG S+V Q S N + + P + AP+P A
Sbjct: 417 NQGGG-STVPAQAQGAQWRAGSQWPSPQNPWAGTIHMWPGPLGRGVLGPRPAPSPFAGAA 475
Query: 379 GFGSSFGMMPQFGYS---PFRGFQPYGAPSQFGMSFPNSGFGSGSPYASGGMFTPPGYGF 435
G S G +P Y P++ G +Q G FG P S + P G+ F
Sbjct: 476 LAGPSGGPLPGQVYPAPVPYQTAAGLGQQAQLGGV---GQFGPSQPPTSVALQQPLGW-F 531
Query: 436 GSGYGFGLPPRAPAPQIRAPHAMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGN 495
G G P + + +W+ D+GAT H+T D +S N
Sbjct: 532 G-----GAPSQWDQASLAGSFNTTTLHQPATNDWYMDTGATAHMTSDTGILSLSHPPNPN 586
Query: 496 D--QVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGV 553
+ +GNG +P+ SIG + H + L+++L P I KNL+SV +F DN
Sbjct: 587 SPSHIVVGNGSTIPVTSIGHSKIC---HPNCSFTLRDILCSPAIIKNLISVRRFVIDNWC 643
Query: 554 YFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPA 613
EF PF +V T +T++ S LYS H LP P ++A
Sbjct: 644 SVEFDPFGFSVKDLRT-RTVIARFNSSGPLYSL--------HHALPPPPAATAL------ 688
Query: 614 SPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEALQSALTTCKIPVPHKSKYTICHSCCV 673
+ ++S ++ LWH RLGH ++AL +P+ +CH+C +
Sbjct: 689 ------LANSSTDL-------LWHRRLGHLGHDALNRLAAV--VPMTRGDLTGVCHACQL 733
Query: 674 AKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRK 733
+ RLP ++S++ + EL DLW + + S++G+ Y+L +D S + W + L+ K
Sbjct: 734 GRHVRLPFASSTSRASTNFELFHCDLW-TSPVVSASGFKYYLVILDDCSHYVWTFPLRFK 792
Query: 734 SETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF--KPLLPHFLKLGITHRLTCPHTHHQN 791
S+T T F A V+ +F I+S+Q D G EF FL G+ R++CPHT QN
Sbjct: 793 SDTFTTLSHFFAYVKTQFATNIRSIQCDNGREFDNSAARTFFLTNGVHLRMSCPHTSPQN 852
Query: 792 GSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVP 851
G ER R + S+L A +P S+W A TAT LINR PT L +P+ L+
Sbjct: 853 GKAERILRSLNNIVRSMLFQAKLPGSFWVEALHTATHLINRHPTKTLDRHTPHFALYGTH 912
Query: 852 ADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCLAS-DGRIYISKDV 910
Y LRVFG CYP+L KL+ RS CVFLGY HKGY+C R+ IS+ V
Sbjct: 913 PSYSHLRVFGCKCYPNLSATTPHKLAPRSTMCVFLGYPLYHKGYRCFDPLSNRVIISRHV 972
Query: 911 QFNEFKFPYSTL-----------FSSEF-------------PASNPSSVSSVIPVISYVP 946
F+E FP++ L F +F PA P++ ++ P++
Sbjct: 973 VFDEHSFPFTELTNGVSNATDLDFLEDFTAPAQAPIGATRRPAVAPTTQTASSPMVH--- 1029
Query: 947 SLQQPIP-SPHH--SHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPAASGTVSPNAVSS 1003
L++P P SP S P G SSP+S S P + A+ S P ++G +P+A +
Sbjct: 1030 GLERPPPCSPTRPVSTPGGPSSPDSRLGPPS-PTPALIGPASTSPGPPSAGP-APSASTC 1087
Query: 1004 TSSSD-------------------HFASASSIP-----ATTTGSSQP------QQVTNVH 1033
+SS H A +P TG+ P V N H
Sbjct: 1088 PASSTWETVARPPTPPGLPRLDGPHLPPAPHVPRRLRSVRATGAPTPLSGLEISPVVNDH 1147
Query: 1034 PMQTRAKSGIVKP--RLLPTLLLAQAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLV 1091
M TRAKSG KP RL P T + AL DP W AAM+ EY+AL++N TW LV
Sbjct: 1148 VMTTRAKSGHHKPVHRLNLHAAPLSLVPKTYRAALADPLWRAAMEEEYNALLANRTWDLV 1207
Query: 1092 TLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRL 1151
P G + + KW+F+ K +ADGS++RYKAR V +G+ Q G D+ ETFSPVVKP T+R
Sbjct: 1208 PRPAGVNVVTGKWIFKHKFHADGSLDRYKARWVLRGFTQRPGVDFDETFSPVVKPATVRT 1267
Query: 1152 ILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDK-TLVCKLNKALYGLKQA 1210
+L+LAVS+ W +HQLDV NAFLHG LQE VY QP GF +S K +VC LNK+LYGLKQA
Sbjct: 1268 VLSLAVSRDWPVHQLDVKNAFLHGTLQETVYCTQPPGFVDSAKPDMVCCLNKSLYGLKQA 1327
Query: 1211 PRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQ 1270
PRAW+ R L GF + D SLF H ++ +Y+L+YVDDI++T + + +
Sbjct: 1328 PRAWYSRFTTFLQSIGFVEAKSDTSLFILHRGNDTVYLLLYVDDIVLTASSRTLLHWTIS 1387
Query: 1271 KLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSG 1330
L EF++K LG L +FLGV V L+L+Q +Y D+LERA MA+ K +TP+ +
Sbjct: 1388 ALQGEFSMKDLGALHHFLGVSVTR-NSAGLVLSQRQYCIDILERAGMADCKPCNTPVDTT 1446
Query: 1331 ARLSKHGADYFSDPTLYRSIVGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRIL 1390
A+LS +DPT +RS+ GALQY T TRP+IS++V +VC + P E H A+KRIL
Sbjct: 1447 AKLSSSDGPPVADPTDFRSLAGALQYLTFTRPDISYAVQQVCLHMHDPREPHLAALKRIL 1506
Query: 1391 RYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKK 1450
Y++G++ GLHI+ S L Y DADW PD RRSTSG VF G NLV+W+SK+
Sbjct: 1507 HYIRGSVDLGLHIQ---RSSACDLAVYSDADWAGCPDTRRSTSGYAVFLGDNLVSWSSKR 1563
Query: 1451 QTLVARSSTEAEYRSLANTSAELLWIQSLLQEL-QVPFTVPKVFCDNMGAVALTHNPVLH 1509
Q V+RSS EAEYR++AN AE+ W++ LLQEL P V+CDN+ AV L+ NPV H
Sbjct: 1564 QHTVSRSSAEAEYRAVANAVAEVTWLRQLLQELHSPPSRATLVYCDNVSAVYLSSNPVQH 1623
Query: 1510 TRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
RTKH+E+D+ FVRE+V ++ V HVP+ Q ADIFTK L F + RS LNV
Sbjct: 1624 QRTKHVEIDLHFVRERVAVGAVRVLHVPTTSQYADIFTKGLPTPVFTEFRSSLNV 1678
>gb|AAC02672.1| polyprotein [Arabidopsis arenosa] gi|7522104|pir||T31353 polyprotein
- Arabidopsis arenosa Evelknievel retrotransposon
(fragment)
Length = 1390
Score = 792 bits (2046), Expect = 0.0
Identities = 461/1107 (41%), Positives = 635/1107 (56%), Gaps = 89/1107 (8%)
Query: 458 MLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFS 517
M+++ P GNW DSGATHH+T D + ++ G ++V + +G GLPI GSA
Sbjct: 322 MVSATPYNSGNWLLDSGATHHLTSDLNNLALHQPYNGGEEVTIADGSGLPISHSGSALLP 381
Query: 518 SPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGS 577
+P + L LK++L VP+I KNL+SV + NGV EF P H V T LL+G
Sbjct: 382 TPTRS---LDLKDVLYVPDIQKNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGK 438
Query: 578 LGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWH 637
++ LY + PV+S+ + S ASP T ++PS WH
Sbjct: 439 TKNE-LYEW---------------PVNSSIATSMFASPTPKT------DLPS------WH 470
Query: 638 SRLGHPHYEALQSALTTCKIPVPHK-SKYTICHSCCVAKSHRLPSSASSTLYTAPLELIF 696
+RLGHP L++ ++ +P+ H +C C + KSH+LP +++ + PLE ++
Sbjct: 471 ARLGHPSLPILKTLISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLY 530
Query: 697 ADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIK 756
D+W + I S Y Y+L VD ++R+TW+Y L++KS+ FI F A+VE KF KI
Sbjct: 531 TDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRQKSQVRETFITFTALVENKFKSKIG 589
Query: 757 SVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPT 816
++ +D G EF L GI+H T PHT NG ERKHRHIVETGL+LL+ A+M
Sbjct: 590 TLYSDNGGEFIALRSFLASHGISHMTTPPHTPELNGISERKHRHIVETGLTLLSTASMSK 649
Query: 817 SYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKL 876
YW +AF TA +LINR+ TPVLGN SPY KLF P +Y LRVFG C+P LRPY + KL
Sbjct: 650 EYWSYAFTTAVYLINRMLTPVLGNESPYMKLFGQPPNYLKLRVFGCLCFPWLRPYTAHKL 709
Query: 877 SFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSV 935
RS CV LGYS S Y CL + GR+Y S+ VQF E FP+ST S P S+P
Sbjct: 710 DNRSMPCVLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESIFPFSTTSPSVTPPSDPPLS 769
Query: 936 SSVIPVISYVPSLQQPIPSPHHSHPT-----------GISSPNS--VDSLQSMPNSPV-- 980
P+ VP L +P+ + S P+ GI SP++ S S P SP+
Sbjct: 770 QDTRPI--SVPILARPLTTAPPSSPSCSAPHRSPSQPGILSPSAPFQPSPPSSPTSPITS 827
Query: 981 ------------------HSAATVSEHPAASGTVSPNAVSSTSSSDHFA-SASSIPATTT 1021
S+ VS P + + SP + S +S H S SI T
Sbjct: 828 PSLSEESHVGHNQETGPTGSSPPVSPQPQSEQSTSPRSTSPQPNSPHTQHSPRSITPALT 887
Query: 1022 GSSQPQQVTNVHP-------MQTRAKSGIVKPRLLPTLLLAQAEPV------TTKHALKD 1068
S P N +P M+TR+K+ IVKP L + P+ T AL D
Sbjct: 888 PSPSPSPPPNPNPPPPIQHTMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVAEALLD 947
Query: 1069 PTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGY 1128
P W AM E +A N T+ LV ++ IGCKWVF +K +G ++RYKARLVAKG+
Sbjct: 948 PNWRQAMCDEINAQTRNGTFDLVPPAPNQNVIGCKWVFTLKYLPNGVLDRYKARLVAKGF 1007
Query: 1129 HQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAG 1188
HQ G D+ ETFSPV+K T+R +L +AVSK W I Q+DVNNAFL G L +EVY+ QP G
Sbjct: 1008 HQQYGHDFKETFSPVIKSTTVRSVLHVAVSKGWSIRQIDVNNAFLQGTLSDEVYVMQPPG 1067
Query: 1189 FQNSDKT-LVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIY 1247
F + D VC+L+KALYGLKQAPRAW+ L++ L+ GF S D SLFT +K ++Y
Sbjct: 1068 FVDKDNPHHVCRLHKALYGLKQAPRAWYQELRSYLLTQGFVNSIADTSLFTLRHKRTILY 1127
Query: 1248 ILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKY 1307
+LVYVDD++ITG+ I + L + F+LK LG++ YFLG++ + L L Q +Y
Sbjct: 1128 VLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATR-TSKGLHLMQKRY 1186
Query: 1308 IGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPEISFS 1367
+ DLLE+ +M A + TPM +LS P+ YR+++G+LQY + TRP+I+++
Sbjct: 1187 VLDLLEKTNMLAAHPVLTPMSPTPKLSLTSGTPLDKPSEYRAVLGSLQYLSFTRPDIAYA 1246
Query: 1368 VNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPD 1427
VN++ Q++ P + HW+A KRILRYL GT HG+ IR +P+ L AY DADW D D
Sbjct: 1247 VNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGIFIR---ADTPLKLHAYSDADWAGDTD 1303
Query: 1428 DRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF 1487
+ ST+ ++ G ++W+SKKQ VARSSTEAEYR++AN ++E+ W+ SLL EL +
Sbjct: 1304 NYNSTNAYILYLGSTPISWSSKKQNGVARSSTEAEYRAVANATSEIRWVCSLLTELGITL 1363
Query: 1488 TVPK-VFCDNMGAVALTHNPVLHTRTK 1513
+ P V+CDN+GA L+ NPV +R K
Sbjct: 1364 SSPPVVYCDNVGATYLSANPVFDSRMK 1390
Score = 108 bits (271), Expect = 1e-21
Identities = 91/362 (25%), Positives = 152/362 (41%), Gaps = 54/362 (14%)
Query: 12 TPTPISVAIPQLSSTSLVHKL--LLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPP 69
+P S I +ST L + + +L DSNF+ W + V ++ + L ++ IPP
Sbjct: 6 SPASASETIAVSTSTLLNINMTNVTRLTDSNFVMWSRQVHALLDGYDLAGYVDGSVPIPP 65
Query: 70 RFLSDADRVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFF 129
+ D V + N + +W++QD +++ LL ++S SV P + S ++WE + F
Sbjct: 66 PTRTTDDGVVTTNND-YTLWKRQDKLVYSALLGAISLSVQPLLSKANTSAEVWETLSSTF 124
Query: 130 HAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLP 189
S A QLR +L+ TKG+K+ Y + + + L +G E +E I GLP
Sbjct: 125 ANPSWAHVQQLRQQLKQWTKGTKSVVTYFQGFTTRFDHLALLGKAPEREEQIELILGGLP 184
Query: 190 EDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQST 249
EDY ++ + SRE P ++++ +I HE +L A A+AT+ T
Sbjct: 185 EDYKTVVDQIESRENPPALTEVLEKLINHEVKL--------------AAKAEATSSVPIT 230
Query: 250 PQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRG 309
A VNY +++ R++ R +
Sbjct: 231 ANA--------------------------VNYRGNNNNNNSRSNGRNNSRGNT------S 258
Query: 310 GYNNRGRGGRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYRGNSTSPATNSQPNMTNQ 369
NN+ R Y R G +CQIC +GH A C ++Q + ++
Sbjct: 259 WQNNQSTTNRQQYTPRPYQG-----KCQICSVHGHSARRCPQLQQHAGSYASNQSSSSSY 313
Query: 370 AP 371
AP
Sbjct: 314 AP 315
>emb|CAB81170.1| retrotransposon like protein [Arabidopsis thaliana]
gi|4539447|emb|CAB40035.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444419|pir||T04204
hypothetical protein T4F9.150 - Arabidopsis thaliana
Length = 1515
Score = 792 bits (2045), Expect = 0.0
Identities = 481/1231 (39%), Positives = 684/1231 (55%), Gaps = 109/1231 (8%)
Query: 392 YSPFRGFQPYGAPSQFGMSFPNSGFGSGSPYASGGMFTPP-------GYGFGSGYGFGLP 444
Y FRG G+ S G F + FGSGS SG P G+ Y
Sbjct: 242 YGNFRG---RGSYSSRGRGF-HQQFGSGSNNGSGNGSKPTCQICRKYGHSAFKCYTRFEE 297
Query: 445 PRAPAPQIRAPHAMLASAPSTLGN--WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGN 502
P A AM S + + W PDS AT H+T+ + + + +G+D V +GN
Sbjct: 298 NYLPEDLPNAFAAMRVSDQNQASSHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGN 357
Query: 503 GQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHC 562
G LPI IG+ + +Q TL L+++L+ P ITK+L+SVSK D F F
Sbjct: 358 GDFLPITHIGTIPLNI---SQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSV 414
Query: 563 TVNSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVS 622
+ + T + L +G+ GLY L VP + +S + +S
Sbjct: 415 VIKDKRTQQLLTQGNKHK-GLYV------------LKDVPFQTYYSTRQQSSDD------ 455
Query: 623 TSNNVPSPTAYDLWHSRLGHPHYEALQSALTTCKIPVPHKSKYTICHSCCVAKSHRLPSS 682
++WH RLGHP+ E LQ + T K V +K+ +C +C + K RLP
Sbjct: 456 -----------EVWHQRLGHPNKEVLQHLIKT-KAIVVNKTSSNMCEACQMGKVCRLPFV 503
Query: 683 ASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQ 742
AS + + PLE I DLWGPA + S+ G+ Y++ +D +SRFTW Y LK KS+ +VF+
Sbjct: 504 ASEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVL 563
Query: 743 FQAMVELKFGLKIKSVQTDGGTEFKP--LLPHFLKLGITHRLTCPHTHHQNGSVERKHRH 800
FQ +VE ++ KI Q DGG EF + H GI ++CPHT QNG ER+HR+
Sbjct: 564 FQQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRY 623
Query: 801 IVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLG-NLSPYHKLFKVPADYKILRV 859
+ E GLSL+ + +P W AF T+ FL N LP+ L N SPY L P Y LRV
Sbjct: 624 LTELGLSLMFHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRV 683
Query: 860 FGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFP 918
FGSACYP+LRPY +K +S CVFLGY++ +KGY+CL G++YI + V F+E KFP
Sbjct: 684 FGSACYPYLRPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFP 743
Query: 919 YSTLFSS------------------------EFPASN-------PSSVSSVIPVISYVPS 947
YS ++S E P++N ++VSS +P P+
Sbjct: 744 YSDIYSQFQTISGSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATVSSSVPT-GCAPN 802
Query: 948 LQQPIPSPHHSHPTG---ISSPNSVDSLQSMPNSPVHSAA-----TVSEHPAASGTVSPN 999
+ + +P + P+ + S S+P P S + + A S ++P
Sbjct: 803 IAETATAPDVDVAAAHDMVVPPSPITST-SLPTQPEESTSDQNHYSTDSETAISSAMTPQ 861
Query: 1000 AVSSTSSSDH-FASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKPRLLPTLLLAQA- 1057
+++ + D F S+ ++TT + + HPM TRAKSGI KP L ++
Sbjct: 862 SINVSLFEDSDFPPLQSVISSTTAAPETS-----HPMITRAKSGITKPNPKYALFSVKSN 916
Query: 1058 --EPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGS 1115
EP + K ALKD W AM E + +TW LV +GCKWVF+ K N+DGS
Sbjct: 917 YPEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDGS 976
Query: 1116 VNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHG 1175
++R KARLVA+GY Q +G DY ET+SPVV+ T+R IL +A +W + QLDV NAFLH
Sbjct: 977 LDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHD 1036
Query: 1176 ALQEEVYMQQPAGFQN-SDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDP 1234
L+E V+M QP GF++ S VCKL KA+Y LKQAPRAWFD+ + L+KYGF S DP
Sbjct: 1037 ELKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDP 1096
Query: 1235 SLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHH 1294
SLF + +V+++L+YVDD+I+TGN +Q+++ L++EF +K +G L YFLG+Q H+
Sbjct: 1097 SLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQAHY 1156
Query: 1295 LQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGAL 1354
D L L+Q KY DLL A M++ + TP+ L + F +PT +R + G L
Sbjct: 1157 HND-GLFLSQEKYTSDLLVNAGMSDCSSMPTPL--QLDLLQGNNKPFPEPTYFRRLAGKL 1213
Query: 1355 QYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSL 1414
QY TLTRP+I F+VN VCQ + P + +KRIL YLKGT+ G+++ S ++ L
Sbjct: 1214 QYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINL---SSNTDSVL 1270
Query: 1415 VAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELL 1474
Y D+DW D RRST G C F G N+++W++K+ V++SSTEAEYR+L+ ++E+
Sbjct: 1271 RCYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVS 1330
Query: 1475 WIQSLLQELQVP-FTVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFV 1533
WI LLQE+ +P +P+++CDN+ AV L+ NP LH+R+KH ++D ++VRE+V +L V
Sbjct: 1331 WIGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTV 1390
Query: 1534 HHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
H+P+ Q+ADIFTK+L F DLR KL V
Sbjct: 1391 KHIPASQQLADIFTKSLPQAPFCDLRFKLGV 1421
Score = 91.7 bits (226), Expect = 2e-16
Identities = 79/286 (27%), Positives = 117/286 (40%), Gaps = 58/286 (20%)
Query: 76 DRVNSVE-NPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSL 134
D + S E N FL W + D + W+ SLS L V+ + ++W + F+ S
Sbjct: 58 DDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNRFST 117
Query: 135 AQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSH 194
+ L+ L + +K K YL +K+I + L SIG PVT +E + + +GL ++Y
Sbjct: 118 TRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGVLNGLGKEYES 177
Query: 195 LMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAF---LAQATTPPQSTPQ 251
+ T++ E LD P F + + TT
Sbjct: 178 IATVI-------------------EHSLD--------VYPGPCFDDVVYKLTTFDDKL-- 208
Query: 252 APPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGY 311
S A + P +A ++ +Y SR ++ R R + R RG Y
Sbjct: 209 ------STYTANSEVTPHLAF---YTDKSYSSRGNNNSRG--------GRYGNFRGRGSY 251
Query: 312 NNRGRG-----GRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYR 352
++RGRG G G N G G S CQIC KYGH A CY R
Sbjct: 252 SSRGRGFHQQFGSGSNNGSGNG---SKPTCQICRKYGHSAFKCYTR 294
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078
gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
Arabidopsis thaliana
Length = 1415
Score = 787 bits (2033), Expect = 0.0
Identities = 450/1107 (40%), Positives = 638/1107 (56%), Gaps = 78/1107 (7%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
WHPDS AT HVT + + G+D V +G+G LPI GS + S + + L
Sbjct: 322 WHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKS---SNGKIPL 378
Query: 529 KNLLLVPNITKNLVSVSKFAQDN--GVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSF 586
+L+VPNI K+L+SVSK D GVYF+ + C ++ Q T K + G +GLY
Sbjct: 379 NEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKV-CIIDLQ-TQKVVTTGPR-RNGLYVL 435
Query: 587 DGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYE 646
+ V+ +N ++WH RLGH + +
Sbjct: 436 ENQE-----------------------------FVALYSNRQCAATEEVWHHRLGHANSK 466
Query: 647 ALQSALTTCKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIE 706
ALQ + I + +C C + KS RLP S + PL+ I DLWGP+ +
Sbjct: 467 ALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVV 526
Query: 707 SSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF 766
S+ G Y+ VD +SR++W Y L KSE +VFI FQ +VE + KIK Q+DGG EF
Sbjct: 527 SNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEF 586
Query: 767 --KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
L H + GI HR++CP+T QNG ERKHRH+VE GLS+L ++ P +W +F
Sbjct: 587 VSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFF 646
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECV 884
TA ++INRLP+ VL NLSPY LF DY LRVFGSACYP LRP +K RS +CV
Sbjct: 647 TANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCV 706
Query: 885 FLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVIS 943
FLGY+S +KGY+C G++YIS++V FNE + P+ + S P +
Sbjct: 707 FLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFKEKYQSLVPQYS------------ 754
Query: 944 YVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMP-NSPVHSAATVSEHPAASGTVSPNAVS 1002
P LQ + H+ + IS P + L S P + ++ + V+E P S
Sbjct: 755 -TPLLQ----AWQHNKISEISVPAAPVQLFSKPIDLNTYAGSQVTEQ-----LTDPEPTS 804
Query: 1003 STSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKPRLLPTLLLAQ---AEP 1059
+ SD + P ++ +QV N H M TR+K+GI KP L+ ++ AEP
Sbjct: 805 NNEGSDEEVN----PVAEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEP 860
Query: 1060 VTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRY 1119
T A+K P W A+ E + + +TW+LV + + KWVF+ K + DGS+++
Sbjct: 861 KTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKL 920
Query: 1120 KARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQE 1179
KARLVAKG+ Q +G DY ETFSPVV+ TIRL+L ++ SK W I QLDV+NAFLHG LQE
Sbjct: 921 KARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQE 980
Query: 1180 EVYMQQPAGFQNSDK-TLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFT 1238
V+M QP+GF + K T VC+L KA+YGLKQAPRAWFD L+ YGF S DPSLF
Sbjct: 981 PVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFV 1040
Query: 1239 FHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDR 1298
H ++Y+L+YVDDI++TG+ +++++Q L + F++K LG YFLG+Q+ +
Sbjct: 1041 CHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYAN- 1099
Query: 1299 SLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYAT 1358
L L QT Y D+L++A M++ + TP+ +L ++ F++PT +RS+ G LQY T
Sbjct: 1100 GLFLHQTAYATDILQQAGMSDCNPMPTPLPQ--QLDNLNSELFAEPTYFRSLAGKLQYLT 1157
Query: 1359 LTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYC 1418
+TRP+I F+VN +CQ + P + +KRILRY+KGTI GL P +S ++L AY
Sbjct: 1158 ITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGL---PIKRNSTLTLSAYS 1214
Query: 1419 DADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQS 1478
D+D + RRST+G C+ G NL++W++K+Q V+ SSTEAEYR+L + E+ WI
Sbjct: 1215 DSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISF 1274
Query: 1479 LLQELQVPFTVP-KVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVP 1537
LL++L +P +P +V+CDN+ AV L+ NP LH R+KH + D ++RE+V + H+
Sbjct: 1275 LLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHIS 1334
Query: 1538 SVDQIADIFTKALSPTRFEDLRSKLNV 1564
+ Q+AD+FTK+L F DLRSKL V
Sbjct: 1335 ATFQLADVFTKSLPRRAFVDLRSKLGV 1361
Score = 114 bits (285), Expect = 3e-23
Identities = 91/341 (26%), Positives = 140/341 (40%), Gaps = 48/341 (14%)
Query: 16 ISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPP--RFLS 73
++ + P + + + LKL DSN+L WK E ++ + +L F+ P R +
Sbjct: 1 MATSYPFPDNVHVTSSVTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVV 60
Query: 74 DADRVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHS 133
+ + + NP + W D + +WL +LS VL V N S QIW ++ + F+ S
Sbjct: 61 NGEVTSEEPNPLYESWFCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSS 120
Query: 134 LAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYS 193
+A+ LR L+ ++K K S Y + K+I +AL SIG PV + +GL DY
Sbjct: 121 VAREFSLRQNLQLLSKKEKPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGLGRDYD 180
Query: 194 HLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAAS--PPSAFLAQATTPPQSTPQ 251
+ T++ S +V + +L+ + AAS P AF
Sbjct: 181 PITTVIQSSLSKLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAF------------- 227
Query: 252 APPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGY 311
+ R+ S Y R RS N+ RGGY
Sbjct: 228 -----------------------------NIERSESGSPQYNPNQKGRGRSGQNKGRGGY 258
Query: 312 NNRGRGGRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYR 352
+ RGRG ++ G R CQIC + GH A CY R
Sbjct: 259 STRGRGFSQHQSSPQVSGPRP--VCQICGRTGHTALKCYNR 297
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 785 bits (2028), Expect = 0.0
Identities = 443/1115 (39%), Positives = 641/1115 (56%), Gaps = 60/1115 (5%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
W+PDS AT H+T S + + + GND V +G+G LPI +GS + SS ++ T+ L
Sbjct: 324 WYPDSAATAHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVGSTTISS---SKGTIPL 380
Query: 529 KNLLLVPNITKNLVSVSKFAQDN--GVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSF 586
+L+ P I K+L+SVSK D GVYF+ + C ++ T K + +G ++GLY
Sbjct: 381 NEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKV-CIIDLT-TQKVVSKGPR-NNGLYML 437
Query: 587 DGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYE 646
+ + V+ +N + + WH RLGH + +
Sbjct: 438 EN-----------------------------SEFVALYSNRQCAASMETWHHRLGHSNSK 468
Query: 647 ALQSALTTCKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIE 706
LQ LT +I V +C C + KS RL +S PL+ + DLWGP+ +
Sbjct: 469 ILQQLLTRKEIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVV 528
Query: 707 SSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF 766
S+ G+ Y+ VD FSRF+W + L+ KS+ +VFI +Q +VE + G KIK Q+DGG EF
Sbjct: 529 SNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQLGTKIKEFQSDGGGEF 588
Query: 767 --KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
L HF + GI HR++CP+T QNG ERKHRH+VE GLS+L ++ P +W AF
Sbjct: 589 TSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYHSHTPLKFWVEAFF 648
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECV 884
TA +L N LP+ VL +SPY LF+ DY LRVFG+ACYP LRP +K RS +CV
Sbjct: 649 TANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPLAKNKFDPRSLQCV 708
Query: 885 FLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVIS 943
FLGY + +KGY+CL G++YIS+ V F+E +FP F ++ + P ++++
Sbjct: 709 FLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFP----FKEKYHSLVPKYQTTLLQAWQ 764
Query: 944 YVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPAASGTVSPNAVSS 1003
+ +PS +P + Q M N A V+ T S S
Sbjct: 765 HTDLTPPSVPSSQLQPLARQMTPMATSENQPMMNYETEEAVNVNME-----TSSDEETES 819
Query: 1004 TSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKPRLLPTLLLAQA---EPV 1060
DH + + + N+HPM TR+K GI KP L+++++ EP
Sbjct: 820 NDEFDHEVAPVLNDQNEDNALGQGSLENLHPMITRSKDGIQKPNPRYALIVSKSSFDEPK 879
Query: 1061 TTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYK 1120
T A+K P+W AA+ E D + NTW+LV + + + KWVF+ K DG++++ K
Sbjct: 880 TITTAMKHPSWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKLKPDGTIDKLK 939
Query: 1121 ARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEE 1180
ARLVAKG+ Q +G DY ETFSPVV+ TIRL+L A + W + QLDV+NAFLHG LQE
Sbjct: 940 ARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQLDVSNAFLHGELQEP 999
Query: 1181 VYMQQPAGFQNSDK-TLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTF 1239
V+M QP+GF + +K VC+L KALYGLKQAPRAWFD L+ +GF+ S DPSLF
Sbjct: 1000 VFMFQPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFECSTSDPSLFVC 1059
Query: 1240 HNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRS 1299
H + +L+YVDDI++TG+ + +++Q LN+ F++K LG YFLG+++ +
Sbjct: 1060 HQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEIES-YNNG 1118
Query: 1300 LLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATL 1359
L L Q Y D+L +A M E + TP+ L ++ F +PT +RS+ G LQY T+
Sbjct: 1119 LFLHQHAYASDILHQAGMTECNPMPTPLPQ--HLEDLNSEPFEEPTYFRSLAGKLQYLTI 1176
Query: 1360 TRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCD 1419
TRP+I ++VN +CQ + P + +KRILRY+KGTI+ GL IR H+PV L +CD
Sbjct: 1177 TRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIR--KHHNPV-LSGFCD 1233
Query: 1420 ADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSL 1479
+D+ D RRST+G C+ G L++W++K+Q ++ SSTEAEYR+L++T+ E+ WI SL
Sbjct: 1234 SDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWISSL 1293
Query: 1480 LQELQVPFTVP-KVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPS 1538
L++L + P +VFCDN+ AV L+ NP LH R+KH + D ++RE+V + H+P+
Sbjct: 1294 LRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQHIPA 1353
Query: 1539 VDQIADIFTKALSPTRFEDLRSKLNVREKLVSHLP 1573
Q+AD+FTK+L F LR+KL V VS P
Sbjct: 1354 TIQLADVFTKSLPRRPFITLRAKLGVSASPVSPTP 1388
Score = 116 bits (290), Expect = 7e-24
Identities = 93/336 (27%), Positives = 140/336 (40%), Gaps = 44/336 (13%)
Query: 19 AIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFL--LHQPEIPPRFLSDAD 76
A P + + + LKL+DSN+L WK E ++ + +L F+ + P R + + D
Sbjct: 4 AYPFPDNVHVSSSVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDD 63
Query: 77 RVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQ 136
+ V NP + W D + +WL +LS VL V N S QIW ++ + F+ S+A+
Sbjct: 64 VTSEVPNPQYEDWFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAR 123
Query: 137 STQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLM 196
LR L+ +TK K+ S Y + K I ++L SIG PV + +GL +Y +
Sbjct: 124 EFSLRRNLQLLTKKDKSLSVYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPIT 183
Query: 197 TIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLV 256
T++ S S+S+ A S F ++ + + P L
Sbjct: 184 TVIQS-----SLSKLPAPTF------------NDVISEVQGFDSKLQSYDDTVSVNPHLA 226
Query: 257 PSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGR 316
+ R+ S Y R RS NR RGGY+ RGR
Sbjct: 227 FN-----------------------TERSNSGAPQYNSNSRGRGRSGQNRGRGGYSTRGR 263
Query: 317 GGRGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYR 352
G + G R CQIC + GH A CY R
Sbjct: 264 GFSQHQSASPSSGQRP--VCQICGRIGHTAIKCYNR 297
>gb|AAK51235.1| polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 785 bits (2028), Expect = 0.0
Identities = 449/1111 (40%), Positives = 629/1111 (56%), Gaps = 59/1111 (5%)
Query: 469 WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLL 528
W PDS AT HVT + + G+D V +G+G LPI +GS + SS TL L
Sbjct: 325 WVPDSAATAHVTSSTNNLQAASPYNGSDTVLVGDGAYLPITHVGSTTISSD---SGTLPL 381
Query: 529 KNLLLVPNITKNLVSVSKFAQDN--GVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSF 586
+L+ P+I K+L+SVSK D GVYF+ + C ++ +T K + +G S+GLY
Sbjct: 382 NEVLVCPDIQKSLLSVSKLCDDYPCGVYFDANKV-CIIDI-NTQKVVSKGPR-SNGLYVL 438
Query: 587 DGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYE 646
+ F+ +N + ++WH RLGH +
Sbjct: 439 ENQEFVAFY-----------------------------SNRQCAASEEIWHHRLGHSNSR 469
Query: 647 ALQSALTTCKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIE 706
LQ ++ +I +C C + KS +L +S++ L I DLWGP+ +
Sbjct: 470 ILQQLKSSKEISFNKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSPVV 529
Query: 707 SSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF 766
S G+ Y++ VD +SR++W Y LK KS+ VF+ FQ +VE +F KIK Q+DGG EF
Sbjct: 530 SKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKIKVFQSDGGGEF 589
Query: 767 KPLL--PHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFL 824
L H GI HR++CP+T QNG ERKHRH VE GLS++ ++ P +W AF
Sbjct: 590 TSNLMKKHLTDCGIQHRISCPYTPQQNGIAERKHRHFVELGLSMMFHSHTPLQFWVEAFF 649
Query: 825 TATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECV 884
TA+FL N LP+P LGN+SP L K +Y +LRVFG+ACYP LRP K RS +CV
Sbjct: 650 TASFLSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACYPCLRPLGEHKFEPRSLQCV 709
Query: 885 FLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVIS 943
FLGY+S +KGY+CL GR+YIS+ V F+E FP+ + P S +S+ S
Sbjct: 710 FLGYNSQYKGYRCLYPPTGRVYISRHVIFDEETFPFKQKYQFLVPQYESSLLSA---WQS 766
Query: 944 YVPSLQQP-IPSPHHSHPTGISSPNSV--DSLQSMPNSPVHSAATVSEHPAASGTVSPNA 1000
+P Q IP ++ P S+ +++Q P V +
Sbjct: 767 SIPQADQSLIPQAEEGKIESLAKPPSIQKNTIQDTTTQPAILTEGVLNEEEEEDSFEETE 826
Query: 1001 VSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKPRLLPTLLLAQ---A 1057
S + H + + T Q+ N HPM TR+K+GI K LL ++
Sbjct: 827 TESLNEETH--TQNDEAEVTVEEEVQQEPENTHPMTTRSKAGIHKSNTRYALLTSKFSVE 884
Query: 1058 EPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVN 1117
EP + AL P W A+ E + +TW+LV + + +GC+WVF+ K DGSV+
Sbjct: 885 EPKSIDEALNHPGWNNAVNDEMRTIHMLHTWSLVQPTEDMNILGCRWVFKTKLKPDGSVD 944
Query: 1118 RYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGAL 1177
+ KARLVAKG+HQ +G DY ETFSPVV+ TIRL+L +A +K W+I QLDV+NAFLHG L
Sbjct: 945 KLKARLVAKGFHQEEGLDYLETFSPVVRTATIRLVLDVATAKGWNIKQLDVSNAFLHGEL 1004
Query: 1178 QEEVYMQQPAGFQNSDK-TLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSL 1236
+E VYM QP GF + +K + VC+L KALYGLKQAPRAWFD + L+ +GF S DPSL
Sbjct: 1005 KEPVYMLQPPGFVDQEKPSYVCRLTKALYGLKQAPRAWFDTISNYLLDFGFSCSKSDPSL 1064
Query: 1237 FTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQ 1296
FT+H + +L+YVDDI++TG+ +QE++ LN F++K LG YFLGV++
Sbjct: 1065 FTYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSLNKRFSMKDLGAPSYFLGVEIES-S 1123
Query: 1297 DRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQY 1356
L L QT Y D+L +A M+ + TP+ + +D F +PT +RS+ G LQY
Sbjct: 1124 PEGLFLHQTAYAKDILHQAAMSNCNSMPTPLPQ--HIENLNSDLFPEPTYFRSLAGKLQY 1181
Query: 1357 ATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVA 1416
T+TRP+I F+VN +CQ + P + +KRILRY+KGTIH GLHI+ + +SLVA
Sbjct: 1182 LTITRPDIQFAVNFICQRMHSPTTADFGLLKRILRYVKGTIHLGLHIKK---NQNLSLVA 1238
Query: 1417 YCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWI 1476
Y D+DW + RRST+G C G NL++W++K+Q V++SSTEAEYR+L + EL W+
Sbjct: 1239 YSDSDWAGCKETRRSTTGFCTLLGCNLISWSAKRQETVSKSSTEAEYRALTAVAQELTWL 1298
Query: 1477 QSLLQELQVPFTVPK-VFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHH 1535
LL+++ V T P V CDN+ AV L+ NP LH R+KH + D ++RE+V + H
Sbjct: 1299 SFLLRDIGVTQTHPTLVKCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLVETKH 1358
Query: 1536 VPSVDQIADIFTKALSPTRFEDLRSKLNVRE 1566
+ + Q+ADIFTK L F DLR KL V E
Sbjct: 1359 ISATLQLADIFTKPLPRRAFIDLRIKLGVAE 1389
Score = 113 bits (283), Expect = 5e-23
Identities = 92/321 (28%), Positives = 135/321 (41%), Gaps = 43/321 (13%)
Query: 34 LKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLS--DADRVNSVENPAFLVWEQ 91
LKL+DSN+L WK E ++ H+L F+ PPR L+ D V NP + W
Sbjct: 19 LKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANPQYESWFC 78
Query: 92 QDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGS 151
D + +WL +LS VL V N Q S IW ++ + F+ S+A+ LR L+ ++K
Sbjct: 79 TDQLIRSWLFGTLSEEVLGYVHNLQTSRDIWISLAENFNKSSVAREFTLRRTLQLLSKKD 138
Query: 152 KNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTSREFPCSISQA 211
K S Y + ++ +AL SIG PV + +GL +Y + T++ S IS
Sbjct: 139 KTLSAYCREFIAVCDALSSIGKPVDESMKIFGFLNGLGREYDPITTVIQSS--LSKISPP 196
Query: 212 EAMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLVPSQSPAPPQAPPPVA 271
+ E + ++L+ + S A P +A
Sbjct: 197 TFRDVISEVKGFDVKLQSYEES------------------------------VTANPHMA 226
Query: 272 IAPPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGGYNNRGRGGDR 331
SE +D+ +R R NR R GY+ RGRG N G+R
Sbjct: 227 FNTQRSEY-------TDNYTSGNRGKGRGGYGQNRGRSGYSTRGRGFSQHQTNSNNTGER 279
Query: 332 SSVQCQICHKYGHDASVCYYR 352
CQIC + GH A CY R
Sbjct: 280 P--VCQICGRTGHTALKCYNR 298
>ref|XP_475911.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|50080247|gb|AAT69582.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1256
Score = 770 bits (1988), Expect = 0.0
Identities = 426/914 (46%), Positives = 569/914 (61%), Gaps = 55/914 (6%)
Query: 697 ADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIK 756
AD+WGPA + + G Y+++ +DAFSRFTWIY LK KSE F +FQ +VE F KI
Sbjct: 349 ADVWGPAPV-AGGGKKYYVSFIDAFSRFTWIYFLKYKSEVFQKFQEFQCLVERMFNRKII 407
Query: 757 SVQTDGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPT 816
S+QTD G E++ L F K+GITH ++CPHTH QNGS ERKHRHIVE GLSLLA A++P
Sbjct: 408 SMQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPL 467
Query: 817 SYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKL 876
+WD A+ + +LINR+PT VLG SP LFK DY+ LR FG AC+P LRPYNS K+
Sbjct: 468 KFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKM 527
Query: 877 SFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSE--------- 926
FRS+ C FLGYS HKG++CL +S GRIYIS+DV F+E FP++ L +
Sbjct: 528 HFRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVFDESVFPFAELNPNAGTNLRKEVN 587
Query: 927 -FPAS--NPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSA 983
PA NP V + ++Y P+ P +P + N + +S
Sbjct: 588 LLPADMLNPGDV-QLNDHVNYYPT--APANMVAAENPVENTEENLASTRDDAADSGGSDT 644
Query: 984 ATVS-----EHPAASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQ-- 1036
T+S + A T +PN ++ +S+ + SAS+ PA+ + + + T +P Q
Sbjct: 645 GTISNADPADDAAGDMTANPN-LNDSSTHESSISASASPASQSSVATAPEATLPNPQQHQ 703
Query: 1037 ----------------TRAKSGIVKPRLLPT------LLLAQAEPVTTKHALKDPTWMAA 1074
T + GI K ++ L EP AL D W A
Sbjct: 704 QALRSSTPEGEASRPVTHLQKGIRKEKIYTDRTVKYGCLTTTGEPRDLHDALHDTNWKHA 763
Query: 1075 MKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGF 1134
M +++ AL+ N TW LV KGR+ I KWV++IK DGS++RYKARLVAKG+ Q G
Sbjct: 764 MDAKFTALLHNKTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGI 823
Query: 1135 DYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNS-D 1193
DY +TFSPVVK TIR+IL++AVS+ W + QLDV NAFLHG L+EEVYM+QP G+++
Sbjct: 824 DYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVYMKQPPGYEDKVH 883
Query: 1194 KTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVD 1253
VCKL+KALYGLKQAPRAW+ +L L GF+ S D SLF ++ +I++LVYVD
Sbjct: 884 PDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVYVD 943
Query: 1254 DIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDLLE 1313
DII+ + + +++ L +FALK LG L YFLG++V+ ++LTQ KY+ DLL
Sbjct: 944 DIIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASS-GIVLTQEKYVTDLLR 1002
Query: 1314 RADMAEAKGISTPMVSGARLSKHGADYF--SDPTLYRSIVGALQYATLTRPEISFSVNKV 1371
R M + K +STP+ + +L+ H D +D + YRS+VGALQY TLTRP+I F VNKV
Sbjct: 1003 RVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYFPVNKV 1062
Query: 1372 CQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRS 1431
CQFL P HW A+KRILRYLK GL I S + + Y DADW + DDRRS
Sbjct: 1063 CQFLHAPTIVHWAAMKRILRYLKQCTKLGLKI---SKSKSMLVSGYSDADWAGNIDDRRS 1119
Query: 1432 TSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSLLQELQVPF-TVP 1490
T G VF G NLV+W +KKQ V RSSTE+EY++LAN +AE++WIQ+LL+EL VP +
Sbjct: 1120 TGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMA 1179
Query: 1491 KVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKAL 1550
+++CDN+GA L+ NPV H RTKH+E+D FVRE++Q + L V +P+ DQ+AD FTKAL
Sbjct: 1180 RLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVADGFTKAL 1239
Query: 1551 SPTRFEDLRSKLNV 1564
S + E+ + LNV
Sbjct: 1240 SARQLENFKYNLNV 1253
Score = 100 bits (248), Expect = 5e-19
Identities = 79/322 (24%), Positives = 140/322 (42%), Gaps = 56/322 (17%)
Query: 35 KLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPR--FLSDADRVNSVENPAFLVWEQQ 92
KL N+L WK V ++R RL S+L + P + ++ V NPA W
Sbjct: 21 KLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEVSNPAVDEWIAN 80
Query: 93 DSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSK 152
D + +LL+++S VL V C + +W + F + + A+S + L + KG
Sbjct: 81 DQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSATRARSINTKIALTNTKKGDL 140
Query: 153 NTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLPEDYSHLMTIVTSREFPCSISQAE 212
++Y+ +++ + + L + G PV + + I GL ED+ +++ + S+ S+ +A
Sbjct: 141 GIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDFEPIISSLVSKSEHVSLGEAY 200
Query: 213 AMVIAHEARLDRLRLRQHAASPPSAFLAQATTPPQSTPQAPPLVPSQSPAPPQAPPPVAI 272
+ +++ E R+++RQ SA LA
Sbjct: 201 SQLLSFE---QRMKMRQE----HSANLA-------------------------------- 221
Query: 273 APPSSEVNYVSRTGSDDRAYEDRDDDRSRSDDNRDRGGYNNRGRGGRGGYNNRGRGGDRS 332
N G+ R ++ + + R GG N+RGR GRG +N+ +GG+
Sbjct: 222 -------NRGRGRGNPGRGRNNKQPQQQQ----RGHGG-NSRGR-GRGNNSNQRQGGNGV 268
Query: 333 SV--QCQICHKYGHDASVCYYR 352
+CQ+C+K GH C+YR
Sbjct: 269 DYRPKCQLCYKRGHTVIDCWYR 290
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 770 bits (1987), Expect = 0.0
Identities = 536/1600 (33%), Positives = 771/1600 (47%), Gaps = 245/1600 (15%)
Query: 2 AEEASPT--QIPTPTPISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQS 59
A +AS T + P P P + + ++ S V ++L LD SN+ W+ E ++ L++
Sbjct: 7 ASDASSTSDEEPVPAPSTSVLQTVNIRSHV-PVVLDLDVSNYSQWRCSFESVLGKFGLEA 65
Query: 60 FLLHQPEIPPRFLSDADRVNSVENPAFLVWEQQDSALFTWLLSSLSPSVLPTVVNCQHS- 118
H E P L A+ W + D + WL +S++ +V V + S
Sbjct: 66 ---HVQEPPALDLRTAE------------WRRADHCVVNWLHNSIAKNVFDVVYKPRASA 110
Query: 119 WQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYR 178
+ +W + F +++ +S L +E RSI +G + Y ++K + + L I PV+
Sbjct: 111 FTVWSDIEGVFRDNAVQRSVYLETEFRSINQGDMTITQYTAKLKQLADGLRDINMPVSEP 170
Query: 179 EHLEAIFDGLPEDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASPPSAF 238
+ + GL + L + R P + A + ++ E ++ QH A +
Sbjct: 171 SQVLNLLRGLNTKFRSLRASIADRNPPHTFMTARSYLLLAELQM------QHDAKAEAGE 224
Query: 239 LAQATTPPQSTPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYVSRTGSDDRAYEDRDDD 298
A T S +G+ D + R
Sbjct: 225 ALYAGTG-------------------------------------SSSGTSDTTGQPRPKG 247
Query: 299 RSRSDDNRDRGGYNNRGRGG---RGGYNNRGRGGDRSSVQCQICHKYGHDASVCYYRGNS 355
R + RGRGG GG + GG + GHD
Sbjct: 248 RGK-----------RRGRGGGAPPGGAPSTPGGGAGA----------GHDGQ-------- 278
Query: 356 TSPATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQFGYSPFRGFQ-----PYGAPSQFGMS 410
P P AP +GY+P+ GF P+ AP G+
Sbjct: 279 ---------------PRPPAP-------------WGYNPWTGFVQAWPFPFRAPGA-GVL 309
Query: 411 FPNSGFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAP------APQIRAPHAMLASA-- 462
P F + + + LPP +P A A ++ L SA
Sbjct: 310 GPRPPFQAQQAMTAQHLLP------------ALPPASPGVHSTGAWDNSALYSALQSAGV 357
Query: 463 ----PSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSS 518
P + +W D+GA+ H++ ++ + + + +GNG LP+ S +
Sbjct: 358 ATTTPPSAADWFLDTGASAHMSSTPGILAHPRPLPFSSCITVGNGAKLPVTHTASTHIPT 417
Query: 519 PIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSL 578
+ T L L N+L+ P + KNL+SV K +DN V EF P ++ T LR
Sbjct: 418 ---SSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQTQVVKLR--C 472
Query: 579 GSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHS 638
S G DL + + S +LS +SP+V + WH
Sbjct: 473 DSPG--------------DLYPLRLPSPHALSATSSPSV----------------EHWHL 502
Query: 639 RLGHPHYEALQSALTT----CKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLEL 694
RLGHP +L L + C PH C +C V + RLP +SS+ P +L
Sbjct: 503 RLGHPGSASLSKVLGSFDFQCNKSAPHH-----CSACHVGTNVRLPFHSSSSQTLFPFQL 557
Query: 695 IFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLK 754
+ D+W + I S++GY Y++ +D F+ + W + ++ KSE F A +FGL
Sbjct: 558 VHTDVW-TSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLP 616
Query: 755 IKSVQTDGGTEFKP-LLPHFLKL-GITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACA 812
+ ++QTD G E+ L L L G RL+CP++ QNG ER R I + ++L +
Sbjct: 617 VLALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHS 676
Query: 813 NMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYN 872
P S+W A TA LINR P G+L PY L P Y LRVFG CYP+
Sbjct: 677 AAPLSFWAEALQTAMHLINRRPCRATGSLKPYQLLLGAPPTYDHLRVFGCLCYPNTIATA 736
Query: 873 SSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEFKFPYSTLFSSEFPASN 931
KLS RS CVF+GY + H+GY+C R++ S+ V F E FP+ + P+
Sbjct: 737 PHKLSPRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPF-----RDAPSPR 791
Query: 932 PSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPA 991
PS+ P P H D++ +P H V PA
Sbjct: 792 PSAP-----------------PPPDHGD----------DTIVLLPAPAQHVVTPVGTAPA 824
Query: 992 ASGTVSPNAVSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKPR---L 1048
P+ SST SS A + P + SS H M TRA++GI KP
Sbjct: 825 HDAASPPSPASSTPSSAAPAHDVAPPPSPETSSPASASPPRHAMTTRARAGISKPNPRYA 884
Query: 1049 LPTLLLAQAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRI 1108
+ P + + AL+DP W AAM++E+DAL++N TWTLV P G I KWVF+
Sbjct: 885 MTATSTLSPTPSSVRVALRDPNWRAAMQAEFDALLANRTWTLVPRPPGARIITGKWVFKT 944
Query: 1109 KENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDV 1168
K +ADGS+++YKAR V +G++Q G D+ ETFSPVVKP TIR +LTL SK+W HQLDV
Sbjct: 945 KLHADGSLDKYKARWVVRGFNQRPGVDFGETFSPVVKPATIRTVLTLISSKQWPAHQLDV 1004
Query: 1169 NNAFLHGALQEEVYMQQPAGFQNSDKTL-VCKLNKALYGLKQAPRAWFDRLKAALVKYGF 1227
+NAFLHG LQE V QQP GF+++ + VC L+++LYGL+QAPRAWF R GF
Sbjct: 1005 SNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRSLYGLRQAPRAWFKRFADHATSLGF 1064
Query: 1228 KASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYF 1287
S DPSLF S+ Y+L+YVDD+I++ + +Q ++ +L +EF +K +G L YF
Sbjct: 1065 VQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYF 1124
Query: 1288 LGVQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLY 1347
LG++V D +L+Q+KY D+LERA MA K ++TP + +LS F D + Y
Sbjct: 1125 LGIEVQRTAD-GFVLSQSKYATDVLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWY 1183
Query: 1348 RSIVGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCS 1407
RSI GALQY TLTRP+I+++V +VC + P E H +KRILRY+KGT GLH+R +
Sbjct: 1184 RSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRAST 1243
Query: 1408 LHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLA 1467
SP +L A+ DADW PD RRSTSG C+F G +L++W+SK+QT V+RSS EAEYR +A
Sbjct: 1244 --SP-TLTAFSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVA 1300
Query: 1468 NTSAELLWIQSLLQELQVPFTVPK---VFCDNMGAVALTHNPVLHTRTKHMELDIFFVRE 1524
N AE W++ LL EL VP+ +CDN+ +V ++ NPV H RTKH+ELDI FVRE
Sbjct: 1301 NAVAECTWLRQLLGELHC--RVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVRE 1358
Query: 1525 KVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
KV L V +PS Q AD+FTK L + F + R+ L V
Sbjct: 1359 KVALGELRVLPIPSAHQFADVFTKGLPSSMFNEFRASLCV 1398
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 733 bits (1893), Expect = 0.0
Identities = 441/1057 (41%), Positives = 595/1057 (55%), Gaps = 67/1057 (6%)
Query: 534 VPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMHSSN 593
V N +NL+SV +F +DN EF F +V T + +LR N
Sbjct: 54 VANPVRNLLSVRQFTRDNKCSIEFDEFGFSVKDLQTRRVILR----------------CN 97
Query: 594 FHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEALQSALT 653
+L +P ++ S A + +++TS+ LWH RLGHP A+
Sbjct: 98 SRGELYTLPAATP-------SSAAHGLLATSST--------LWHCRLGHPGPAAIHGLRN 142
Query: 654 TCKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAGYSY 713
I +K ++CH+C + K RLP SS+ + P EL+ D+W + + S++G+ Y
Sbjct: 143 IASISC-NKIDTSLCHACQLGKHTRLPFHNSSSRTSVPFELVHCDVW-TSPVMSTSGFKY 200
Query: 714 FLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEF--KPLLP 771
+L +D FS F W +LL+ KS+ ++F V +FGL +KS Q D G EF +
Sbjct: 201 YLVVLDDFSHFCWTFLLRLKSDVHRHIVEFVEYVSTQFGLPLKSFQADNGREFVNTAITT 260
Query: 772 HFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLIN 831
G RL+CP+T QNG ER R I + +LL A+MP SYW A TAT+L+N
Sbjct: 261 FLASRGTQLRLSCPYTSPQNGKAERMLRTINNSIRTLLIQASMPPSYWAEALATATYLLN 320
Query: 832 RLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSS 891
R P+ + P+ L + D+ LRVFG CYP+L KLS RS CVFLGY +S
Sbjct: 321 RRPSSSIHQSLPFQLLHRTIPDFSHLRVFGCLCYPNLSATTPHKLSPRSTACVFLGYPTS 380
Query: 892 HKGYKCL-ASDGRIYISKDVQFNEFKFPYST----------LFSSEFPASNPSSVSSVIP 940
HKGY+CL S RI IS+ V F+E +FP++ L PA PS
Sbjct: 381 HKGYRCLDLSTHRIIISRHVVFDESQFPFAATPPAASSFDFLLQGLSPADAPSLEVEQPR 440
Query: 941 VISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPAASGTVSPNA 1000
++ PS + + P+ P+ S +V P++ T S G+ +
Sbjct: 441 PLTVAPSTE--VEQPYLPLPSRRLSAGTVTVASEAPSAGAPLVGTSSADATPPGSATR-- 496
Query: 1001 VSSTSSSDHFASASSIPATTTGSSQPQQVTNV------HPMQTRAKSGIVKP--RLLPTL 1052
+ST S + P TT S VTN H M TR++SG ++P RL T
Sbjct: 497 -ASTIVSPFRHVYTRRPVTTVPPSSSTAVTNAVAAPQPHSMVTRSQSGSLRPVDRLTYTA 555
Query: 1053 LLAQAEPVTTKH--ALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKE 1110
A A PV + AL DP W AAM EY L+ N TW LV+ P + KW+F+ K
Sbjct: 556 TQAAASPVPANYHSALADPNWRAAMADEYKELVDNGTWRLVSRPPRANIATGKWIFKHKF 615
Query: 1111 NADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNN 1170
++DGS+ RYKAR V +GY Q G DY ETFSPVVK TIR++L++A S+ W IHQLDV N
Sbjct: 616 HSDGSLARYKARWVVRGYSQQHGIDYDETFSPVVKLATIRVVLSIAASRAWPIHQLDVKN 675
Query: 1171 AFLHGALQEEVYMQQPAGFQN-SDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKA 1229
AFLHG L+E VY QQP+GF + + VC L K+LYGLKQAPRAW+ R + + GF
Sbjct: 676 AFLHGHLKETVYCQQPSGFVDPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYIRQMGFMP 735
Query: 1230 SCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLG 1289
S D SLF + + + Y+L+YVDDII+T + +Q++ +L+SEFA+ LG L +FLG
Sbjct: 736 SASDTSLFVYKDGDRIAYLLLYVDDIILTASTTTLLQQLTARLHSEFAMTDLGDLHFFLG 795
Query: 1290 VQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRS 1349
+ V D L L+Q +Y DLL+RA MAE STP+ + A+LS +DP+ YRS
Sbjct: 796 ISVKRSPD-GLFLSQRQYAVDLLQRAGMAECHSTSTPVDTHAKLSATDGLPVADPSAYRS 854
Query: 1350 IVGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLH 1409
I GALQY TLTRP+++++V +VC F+ P E H VKRILRY+KG++ GLHI +
Sbjct: 855 IAGALQYLTLTRPDLAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSIGLHIGSGPIQ 914
Query: 1410 SPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANT 1469
SL AY DADW P+ RRSTSG CV+ G NLV+W+SK+QT V+RSS EAEYR++A+
Sbjct: 915 ---SLTAYSDADWAGCPNSRRSTSGYCVYLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHA 971
Query: 1470 SAELLWIQSLLQELQVPF-TVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQN 1528
AE W++ LLQEL VP + V+CDN+ AV +T NPV H RTKH+E+DI FVREKV
Sbjct: 972 VAECCWLRQLLQELHVPIASATIVYCDNVSAVYMTANPVHHRRTKHIEIDIHFVREKVAL 1031
Query: 1529 QSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNVR 1565
+ V +VPS Q ADI TK L F D RS L VR
Sbjct: 1032 GQVRVLYVPSSHQFADIMTKGLPVQLFTDFRSSLCVR 1068
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,852,734,396
Number of Sequences: 2540612
Number of extensions: 132915360
Number of successful extensions: 779840
Number of sequences better than 10.0: 5164
Number of HSP's better than 10.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 3246
Number of HSP's that attempted gapping in prelim test: 714829
Number of HSP's gapped (non-prelim): 37156
length of query: 1573
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1431
effective length of database: 502,593,490
effective search space: 719211284190
effective search space used: 719211284190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0010.11