BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0009.7
(1310 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 333 3e-89
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 317 2e-84
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 315 8e-84
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 312 4e-83
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 312 5e-83
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 303 2e-80
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 303 2e-80
pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana gi... 301 1e-79
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 298 8e-79
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 296 3e-78
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 293 3e-77
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 290 2e-76
gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] 288 6e-76
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 287 1e-75
gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|2540301... 286 3e-75
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 285 7e-75
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 282 6e-74
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 282 6e-74
pir||A96519 protein T2E6.4 [imported] - Arabidopsis thaliana gi|... 281 1e-73
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 279 5e-73
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 333 bits (853), Expect = 3e-89
Identities = 247/920 (26%), Positives = 415/920 (44%), Gaps = 84/920 (9%)
Query: 413 DFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKL 472
+FF +G + N A + LI K + +RP+SL +K+I K++ TRL+ V+ KL
Sbjct: 337 EFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKL 396
Query: 473 LSQNQFAFTKERQIADCILLANEVADFLSKKS--EGGLMLKVDLAKAYDQVDWEFLINML 530
+ Q +F R D I+L E + +K +G ++LK+DL KAYD+V W+FL L
Sbjct: 397 IGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETL 456
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
+ W S + + ++ S+++L NG TD F +GLRQGDPLSP LF LCL L
Sbjct: 457 EAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCH 516
Query: 591 LLNQFLGEENYCGVRIS-RNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+ +G+ + + +S ++H+ FADD +LF E + Q+ + VL F ASG K
Sbjct: 517 LIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQK 576
Query: 650 VNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPI-SYLGAPLGGNPRRIVFWNPMLEKLK 708
V+ +KS++ + + E+E+L T + YLG P+ + +LE++
Sbjct: 577 VSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVS 636
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+ + + +SL+GR+ +TK+VL SIP+ +M P + +++ F+WG +
Sbjct: 637 ARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEK 696
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
KK + + W +IC + GG+GL N+ L+ K WR ++ SLW V ++Y
Sbjct: 697 KKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYK--- 753
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISI----GDGSRVKFWRDP 884
+ + T+ WR S++ G +E ++ + GDG ++FW D
Sbjct: 754 ---VGGVQDTSWLKPQPRWSSTWR------SVAVGLREVVVKGVGWVPGDGCTIRFWLDR 804
Query: 885 WVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLAS 944
W+ L L + E RI Y GW+L G + E ++ L S
Sbjct: 805 WLLQEPLVELGTDMIPEGE----RIKVAADYWLPGSGWNLEILGLYL---PETVKRRLLS 857
Query: 945 INHIIPAAVG-GDQLIWCANQTGLFSVKELCYWLEDHL--------FTHQMWQVPKSIAK 995
+ ++ +G GD++ W Q G F+V+ L+ + F +++W++
Sbjct: 858 V--VVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKL------ 909
Query: 996 LLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSL 1055
+ P +V +F W + I T + R + N C CN +E+ H+ C ++ +
Sbjct: 910 ITPERVRVFIWLVSQNVIMTNVERVRRHLSENAI--CSVCNGAEETILHVLRDCPAMEPI 967
Query: 1056 WCVIVNRERFLWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERNNICFNHK 1115
W ++ R SL LEW F K +W + W W R F +
Sbjct: 968 WRRLLPLRRHHEFFSQSL----LEWLFTNMDPVKGIWPTLFGMGIWWAWKWRCCDVFGER 1023
Query: 1116 AL----------NISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPSLLR 1165
+ E+ H+ +G R N ++++ R
Sbjct: 1024 KICRDRLKFIKDMAEEVRRVHVGAVG------NRPNGVRVERMIR--------------- 1062
Query: 1166 AASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGEGYAFEAEVLA 1225
W P G +KI DGA++G+ G GG +RN LG F+ ++G A AE+
Sbjct: 1063 ---WQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWG 1119
Query: 1226 IHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCLKVNH 1285
+ LL + R + ++ D L VG+++ + L + + ++V+H
Sbjct: 1120 AYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSH 1179
Query: 1286 IYREANGEADKLAKRGAEYP 1305
+YREAN AD LA P
Sbjct: 1180 VYREANRLADGLANYAFTLP 1199
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa
(japonica cultivar-group)] gi|50928543|ref|XP_473799.1|
OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
Length = 1026
Score = 317 bits (812), Expect = 2e-84
Identities = 218/706 (30%), Positives = 340/706 (47%), Gaps = 45/706 (6%)
Query: 424 MNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKE 483
+N ITLIPK ++AS + +RPI L+ S+K+I KVL RL M ++S+ Q AF K
Sbjct: 295 LNFGVITLIPKTKDASQIQKFRPICLLNVSFKIITKVLMNRLNGTMAYIISKQQTAFLKN 354
Query: 484 RQIADCILLANEVADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWISWM 543
R I + +++ +EV + + +K + G++ KVD KAYD+V+W F+ ML F D+W W+
Sbjct: 355 RFIMEGVVILHEVLNSIHQKKQSGILFKVDFEKAYDKVNWVFIYRMLKAKGFPDQWCDWI 414
Query: 544 KSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENYC- 602
+ +A+ VN FF KGLRQGDPLSPLLFNL L+ L+ + EEN
Sbjct: 415 MKVVMGGKVAVKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLVQR--AEENSLI 472
Query: 603 -GVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKVNNQKSELIGCN 661
G+ + + I L +ADDT+ + + L +L F SGLK+N KSE+
Sbjct: 473 EGLGTNGDNKIAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFNKSEVFCFG 532
Query: 662 VQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIV--FWNPMLEKLKCKTRSYNSKFM 719
+ + ++ F VG+LP+ YLG P+ + +RI+ W K++ K + +
Sbjct: 533 EAKEKQDLYSNIFTCKVGSLPLKYLGIPI--DQKRILNKDWKLAENKMEHKLGCWQGRLQ 590
Query: 720 SLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKKINWIGWDQI 779
S+ GRL++ S L S+P++++ ++ PKGV ++ F+W ++QG +K + + W +
Sbjct: 591 SIGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLV 650
Query: 780 CLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDSLIWHMASTT 839
C R GGLG+ +E N+ +L KW WR E W+ + +Y S
Sbjct: 651 CSPRDQGGLGVLDLEAMNKAMLGKWIWRLENE-EGWWQEIIYAKY-----------CSDK 698
Query: 840 PAMGSR---AIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVALCHLFP 896
P G R W+ + E F + +G+G + FW D W+ L FP
Sbjct: 699 PLSGLRLKAGSSHFWQGVMEVKDDFFSFCTKI---VGNGEKTLFWEDSWLGGKPLAIQFP 755
Query: 897 RLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHIIPAAVGGD 956
LY + K IA++ K + FR + +++ + S + D
Sbjct: 756 SLYGIVITKRITIADLNR----KGIDCMKFRRDLHGDKLRDWRKIVNSWEGLNLVENCKD 811
Query: 957 QLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIAKL-LPPKVALFFWQAQNDKIAT 1015
+L W ++ G F+V+ L+ Q K I K +P K+ +F W +KI T
Sbjct: 812 KLWWTLSKDGKFTVRSFYRALK----LQQTSFPNKKIWKFRVPLKIRIFIWFFTKNKILT 867
Query: 1016 RANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC---HSIWSLWCVIVNRERFLWVMPAS 1072
+ NLL RG G +C FC+ E+ H+F C IW++ +N + L S
Sbjct: 868 KDNLLKRGW-RKGDNKCQFCDKV-ETVQHLFFDCPLARLIWNIIACALNVKPVL-----S 920
Query: 1073 LADLILEWDFLPKISDKSLWSLIPYALSWSIWIERNNICFNHKALN 1118
DL W K+L + A+ WSIW RN CF K N
Sbjct: 921 RQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIWKCRNKACFERKLPN 966
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 315 bits (806), Expect = 8e-84
Identities = 212/710 (29%), Positives = 341/710 (47%), Gaps = 60/710 (8%)
Query: 422 RGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFT 481
R +N ITLIPK ++A+++ +RPI L+ +K + K+L RL ++ K++ ++Q AF
Sbjct: 29 RRLNYGVITLIPKVKDANTIKSFRPICLLNVCFKFLTKILTRRLSEIAQKVIGESQTAFI 88
Query: 482 KERQIADCILLANEVADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWIS 541
RQ D +++ +EV L K+ + G++ K+D KAYD+V W FL ++LH+ F D+WI
Sbjct: 89 PGRQNLDGVVILHEVLHELKKEKKSGIIFKLDFEKAYDKVQWSFLFDVLHKKGFSDRWIQ 148
Query: 542 WMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENY 601
W+K +A+ +NG DFF +G+RQGDPLSPLLFNL + LS +LN +
Sbjct: 149 WVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLN---NAKQA 205
Query: 602 CGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKVNNQKSELIGCN 661
+ LT HL +ADDT+LF N E + T+ +L + SGLK+N QKSE++
Sbjct: 206 VPHLVPGGLT--HLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMVIG 263
Query: 662 VQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCKTRSYNSKFMSL 721
+E +R+A F G +P +YLG P+ N + K++ + ++ ++S
Sbjct: 264 GDEMETQRVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSY 323
Query: 722 SGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKKINWIGWDQICL 781
G+ ++ S L SIPL++M V+ P+GV +++ + F W + ++K + I W+ +C
Sbjct: 324 GGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCR 383
Query: 782 NRKAGGLGLGFIEWR--NRGLLLKWAWRFGREINSLWRFFVIERYNLDPDSLIWHMASTT 839
++ G GLGFI+ R N LL KW +R + +Y D A +
Sbjct: 384 PKEFG--GLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEES 441
Query: 840 PAMGSRAIQDIWRVLNEDH---SLSAGFKENLLISIGDGSRVKFWRDPWVSNVALCHLFP 896
W+ L+E L + +K +G+G FW D W+ L +P
Sbjct: 442 --------SQFWKGLHEVKKWMDLGSSYK------VGNGKATNFWSDVWIGETPLKTQYP 487
Query: 897 RLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASIN--HIIPAAV- 953
+Y M +KE ++++ G W + L ++ L N H P +
Sbjct: 488 NIYRMCADKEKTVSQM--CLEGDW---------YIELRRSLGERDLNEWNDLHNTPREIH 536
Query: 954 ---GGDQLIWCANQTGLFSVKELCYWLE----DHLFTHQMWQVPKSIAKLLPPKVALFFW 1006
D +IW + G + K L L +W+ +P KV + FW
Sbjct: 537 LKEERDCIIWKLTKNGFYKAKTLYQALSFGGVKDKVMQDLWR------SSIPLKVKILFW 590
Query: 1007 QAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSLWCVIVNRERFL 1066
+I L + + +GS C C E +H+ CH +WC R+ F
Sbjct: 591 LMLKGRIQAAGQL--KKMKWSGSPNCKLCGQ-TEDVDHLMFRCHISQFMWCCY--RDAFG 645
Query: 1067 W-VMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERNNICFNHK 1115
W +P+S DL LE + K KS+ A +W+IW+ RN+ FN K
Sbjct: 646 WDNIPSSREDL-LEKLNIQKDGQKSVLLACLAAGTWAIWLMRNDWVFNGK 694
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 312 bits (800), Expect = 4e-83
Identities = 251/923 (27%), Positives = 417/923 (44%), Gaps = 83/923 (8%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF + + +N I +IPK N ++L+ YRPI+L YK+I+K L RL+ + ++
Sbjct: 856 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 915
Query: 474 SQNQFAFTKERQIADCILLANEVADFLSKK---SEGGLMLKVDLAKAYDQVDWEFLINML 530
S +Q AF R I D +++A+EV L + S+ + +K D++KAYD+V+W+FL +
Sbjct: 916 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 975
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F +KWI W+ + + S ++L+NGSP + + +G+RQGDPLSP LF LC + LS
Sbjct: 976 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 1035
Query: 591 LLNQFLGEENYCGVRISRNL-TINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+N + GVRI I HL FADD+L FC+ N + L +V + + SG K
Sbjct: 1036 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 1095
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
+N QKS + G V RL YLG P ++ + +++++K
Sbjct: 1096 INVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 1155
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+T +++++F+S +G+ ++ KSV ++P++ M FK PKG++ E+E L F W + +
Sbjct: 1156 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 1215
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
+ I W+ W ++ ++K GGLG + N LL K AWR + NSL+ + RY D
Sbjct: 1216 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKD- 1274
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSN 888
S A + W L + +L K+ IGDG ++ D N
Sbjct: 1275 -------VSILDAKVRKQQSYGWASLLDGIAL---LKKGTRHLIGDGQNIRIGLD----N 1320
Query: 889 VALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINH- 947
+ H L KE I + + R +G ++ W++ QF+ +H
Sbjct: 1321 IVDSHPPRPLNTEETYKEMTINNL--FER---------KGSYYFWDDSKISQFVDQSDHG 1369
Query: 948 -----IIPAAVGGDQLIWCANQTGLFSVKELCYWLEDH----------------LFTHQM 986
+ + D++IW N TG ++V+ YWL H ++
Sbjct: 1370 FIHRIYLAKSKKPDKIIWNYNTTGEYTVRS-GYWLLTHDPSTNIPAINPPHGSIDLKTRI 1428
Query: 987 WQVPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIF 1046
W +P + PK+ F W+A + +AT L RG+ ++ S C C+ +ES NH
Sbjct: 1429 WNLP------IMPKLKHFLWRALSQALATTERLTTRGMRIDPS--CPRCHRENESINHAL 1480
Query: 1047 LHCHSIWSLWCV----IVNRERFLWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWS 1102
C W + ++ + ++++++ +F+ + L+P L W
Sbjct: 1481 FTCPFATMAWRLSDSSLIRNQLMSNDFEENISNIL---NFVQDTTMSDFHKLLPVWLIWR 1537
Query: 1103 IWIERNNICFNHKALNISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPS 1162
IW RNN+ FN + S+ +L TH+ L +++ + ++
Sbjct: 1538 IWKARNNVVFNKFRESPSKT----VLSAKAETHDWL--------NATQSHKKTPSPTRQI 1585
Query: 1163 LLRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFS-KSVGEGYAFEA 1221
W P A +K N D G I+RN+ + + S K EA
Sbjct: 1586 AENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEA 1645
Query: 1222 EVLAIHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCL 1281
E A+ AL R + +E D + +N + L N L I W + +
Sbjct: 1646 ETKALLAALQQTWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASI 1704
Query: 1282 KVNHIYREANGEADKLAKRGAEY 1304
+ I ++ N A LAK G Y
Sbjct: 1705 QFGFIRKKGNKLAHVLAKYGCTY 1727
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 312 bits (799), Expect = 5e-83
Identities = 256/930 (27%), Positives = 415/930 (44%), Gaps = 97/930 (10%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF + + +N I +IPK N ++L+ YRPI+L YK+I+K L RL+ + ++
Sbjct: 630 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 689
Query: 474 SQNQFAFTKERQIADCILLANEVADFLSKK---SEGGLMLKVDLAKAYDQVDWEFLINML 530
S +Q AF R I D +++A+EV L + S+ + +K D++KAYD+V+W+FL +
Sbjct: 690 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 749
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F +KWI W+ + + S ++L+NGSP + + +G+RQGDPLSP LF LC + LS
Sbjct: 750 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 809
Query: 591 LLNQFLGEENYCGVRISRNL-TINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+N + GVRI I HL FADD+L FC+ N + L +V + + SG K
Sbjct: 810 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 869
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
+N QKS + G V +L YLG P ++ + +++++K
Sbjct: 870 INVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 929
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+T +++++F+S +G+ ++ KSV ++P++ M FK PKG++ E+E L F W + +
Sbjct: 930 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 989
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
+ I W+ W ++ ++K GGLG + N LL K AWR + NSL+ + RY D
Sbjct: 990 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKD- 1048
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSN 888
S A + W L + +L K+ IGDG ++ D N
Sbjct: 1049 -------VSILDAKVRKQQSYGWASLLDGIAL---LKKGTRHLIGDGQNIRIGLD----N 1094
Query: 889 VALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINH- 947
+ H L KE I + + R +G ++ W++ QF+ +H
Sbjct: 1095 IVDSHPPRPLNTEETYKEMTINNL--FER---------KGSYYFWDDSKISQFVDQSDHG 1143
Query: 948 -----IIPAAVGGDQLIWCANQTGLFSVKELCYWLEDH----------------LFTHQM 986
+ + D++IW N TG ++V+ YWL H ++
Sbjct: 1144 FIHRIYLAKSKKPDKIIWNYNTTGEYTVRS-GYWLLTHDPSTNIPAINPPHGSIDLKTRI 1202
Query: 987 WQVPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIF 1046
W +P + PK+ F W+A + +AT L RG+ ++ C C+ +ES NH
Sbjct: 1203 WNLP------IMPKLKHFLWRALSQALATTERLTTRGMRID--PICPRCHRENESINHAL 1254
Query: 1047 LHCHSIWSLWCVIVNRERFLWVMPASL-ADLILEWDFLPKISD----------KSLWSLI 1095
C W W+ +SL + ++ DF IS+ L+
Sbjct: 1255 FTCPFATMAW----------WLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLL 1304
Query: 1096 PYALSWSIWIERNNICFNHKALNISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESI 1155
P L W IW RNN+ FN + S+ +L TH+ L +++ +
Sbjct: 1305 PVWLIWRIWKARNNVVFNKFRESPSKT----VLSAKAETHDWL--------NATQSHKKT 1352
Query: 1156 RFASKPSLLRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFS-KSVG 1214
++ W P A +K N D G I+RN+ + + S K
Sbjct: 1353 PSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH 1412
Query: 1215 EGYAFEAEVLAIHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRW 1274
EAE A+ AL R + +E D + +N + L N L I W
Sbjct: 1413 TSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFW 1471
Query: 1275 LVETNCLKVNHIYREANGEADKLAKRGAEY 1304
+ ++ I R+ N A LAK G Y
Sbjct: 1472 ANKFASIQFGFIRRKGNKLAHVLAKYGCTY 1501
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 303 bits (777), Expect = 2e-80
Identities = 240/865 (27%), Positives = 396/865 (45%), Gaps = 86/865 (9%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF +G + + N I LIPK + ++ RPISL YK+I+K+L RL+K +P ++
Sbjct: 452 FFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIV 511
Query: 474 SQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
S Q AF +R I+D IL+A+E+ L + S+ + K D++KAYD+V+W FL M+
Sbjct: 512 STTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMM 571
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
+ F +KWISW+ +C++S S ++L+NG P +G+RQGDPLSP LF LC L
Sbjct: 572 TALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIH 631
Query: 591 LLNQFLGEENYCGVRI-SRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
+LN+ G++ + +++NHLLFADDTLL C+ + + E L L + SG
Sbjct: 632 ILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQM 691
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAP--LGGNPRRIVFWNPMLEK 706
+N KS + G NV + + G S+ YLG P L G+ R + + + EK
Sbjct: 692 INLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDL--FGFIKEK 749
Query: 707 LKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQ 766
L+ + + +K +S G+ V+ KS+ ++P+++M FK PK + ++ + F W Q
Sbjct: 750 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 809
Query: 767 GRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNL 826
++KI+W+ W ++ L + GG G ++ N+ LL K AWR +E SL+ RY
Sbjct: 810 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 869
Query: 827 DPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWV 886
+ D L + GSR WR + L + L IG+G + W D W+
Sbjct: 870 NSDFL-------SATRGSRP-SYAWRSILFGREL---LMQGLRTVIGNGQKTFVWTDKWL 918
Query: 887 SNVALCHLFPRLYAMSENKEARIAE-VGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASI 945
+ + + P N + ++++ + SR W+L F W++ + I
Sbjct: 919 HDGS--NRRPLNRRRFINVDLKVSQLIDPTSR---NWNLNMLRDLFPWKD------VEII 967
Query: 946 NHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQ---VPKSIAKLL----- 997
P D W + GL+SVK +L + H+++Q V S+ L
Sbjct: 968 LKQRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVH-HRLYQEAKVKPSVNSLFDKIWN 1026
Query: 998 ---PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC---HS 1051
PK+ +F W+A + I L RGI CL C+ +E+ NHI C
Sbjct: 1027 LHTAPKIRIFLWKALHGAIPVEDRLRTRGI--RSDDGCLMCDTENETINHILFECPLARQ 1084
Query: 1052 IWSLWCVIVNRERF---LWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERN 1108
+W++ + F ++ + L DL + D + S W L W +W RN
Sbjct: 1085 VWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWIL------WFLWKNRN 1138
Query: 1109 NICFNHKALNISEIWD-----FHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPSL 1163
+ F K + + D +H W++ + QN
Sbjct: 1139 ALLFEGKGSITTTLVDKAYEAYH----EWFSAQTHMQND------------------EKH 1176
Query: 1164 LRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGEGYA-FEAE 1222
L+ W P G +K N+ A G ++R++ +L +S E ++ + A+
Sbjct: 1177 LKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAK 1236
Query: 1223 VLAIHEALLFCVQRQLRNIIIESDS 1247
+ + AL +I S +
Sbjct: 1237 IRSWEWALESMTHHHFDRVIFASST 1261
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 303 bits (777), Expect = 2e-80
Identities = 240/865 (27%), Positives = 396/865 (45%), Gaps = 86/865 (9%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF +G + + N I LIPK + ++ RPISL YK+I+K+L RL+K +P ++
Sbjct: 473 FFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIV 532
Query: 474 SQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
S Q AF +R I+D IL+A+E+ L + S+ + K D++KAYD+V+W FL M+
Sbjct: 533 STTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMM 592
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
+ F +KWISW+ +C++S S ++L+NG P +G+RQGDPLSP LF LC L
Sbjct: 593 TALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIH 652
Query: 591 LLNQFLGEENYCGVRI-SRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
+LN+ G++ + +++NHLLFADDTLL C+ + + E L L + SG
Sbjct: 653 ILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQM 712
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAP--LGGNPRRIVFWNPMLEK 706
+N KS + G NV + + G S+ YLG P L G+ R + + + EK
Sbjct: 713 INLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDL--FGFIKEK 770
Query: 707 LKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQ 766
L+ + + +K +S G+ V+ KS+ ++P+++M FK PK + ++ + F W Q
Sbjct: 771 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 830
Query: 767 GRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNL 826
++KI+W+ W ++ L + GG G ++ N+ LL K AWR +E SL+ RY
Sbjct: 831 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 890
Query: 827 DPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWV 886
+ D L + GSR WR + L + L IG+G + W D W+
Sbjct: 891 NSDFL-------SATRGSRP-SYAWRSILFGREL---LMQGLRTVIGNGQKTFVWTDKWL 939
Query: 887 SNVALCHLFPRLYAMSENKEARIAE-VGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASI 945
+ + + P N + ++++ + SR W+L F W++ + I
Sbjct: 940 HDGS--NRRPLNRRRFINVDLKVSQLIDPTSR---NWNLNMLRDLFPWKD------VEII 988
Query: 946 NHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQ---VPKSIAKLL----- 997
P D W + GL+SVK +L + H+++Q V S+ L
Sbjct: 989 LKQRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVH-HRLYQEAKVKPSVNSLFDKIWN 1047
Query: 998 ---PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC---HS 1051
PK+ +F W+A + I L RGI CL C+ +E+ NHI C
Sbjct: 1048 LHTAPKIRIFLWKALHGAIPVEDRLRTRGI--RSDDGCLMCDTENETINHILFECPLARQ 1105
Query: 1052 IWSLWCVIVNRERF---LWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERN 1108
+W++ + F ++ + L DL + D + S W L W +W RN
Sbjct: 1106 VWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWIL------WFLWKNRN 1159
Query: 1109 NICFNHKALNISEIWD-----FHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPSL 1163
+ F K + + D +H W++ + QN
Sbjct: 1160 ALLFEGKGSITTTLVDKAYEAYH----EWFSAQTHMQND------------------EKH 1197
Query: 1164 LRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGEGYA-FEAE 1222
L+ W P G +K N+ A G ++R++ +L +S E ++ + A+
Sbjct: 1198 LKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAK 1257
Query: 1223 VLAIHEALLFCVQRQLRNIIIESDS 1247
+ + AL +I S +
Sbjct: 1258 IRSWEWALESMTHHHFDRVIFASST 1282
>pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana
gi|9755374|gb|AAF98181.1| F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 301 bits (770), Expect = 1e-79
Identities = 205/672 (30%), Positives = 332/672 (48%), Gaps = 49/672 (7%)
Query: 404 GAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLAT 463
G F + FF G + +G+N+ + LIPKK A + YRPIS YK+I+K++A
Sbjct: 136 GQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIAN 195
Query: 464 RLQKVMPKLLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQVD 522
RL+ ++P+ +++NQ AF K+R + + +LLA E V D+ +K+D++KA+D V
Sbjct: 196 RLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQ 255
Query: 523 WEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFN 582
W FL N L MNF +I W+ CI++AS ++ VNG +F ++GLRQG LSP LF
Sbjct: 256 WSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFV 315
Query: 583 LCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITF 642
+C++ LS +L++ G + + L + HL FADD ++ + +E + V F
Sbjct: 316 ICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEF 375
Query: 643 LFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNP 702
SGL+++ +KS L V + + +A F + VG LP+ YLG PL ++P
Sbjct: 376 CKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSP 435
Query: 703 MLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIW 762
+LE++K + ++ +F S +GR + KSVL SI F + F+ P+ I E++KL +F+W
Sbjct: 436 LLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLW 495
Query: 763 -GQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVI 821
G E K I WD +C + GGLGL ++ N LK WR NSLW +V
Sbjct: 496 SGSEMSSHKAK-ISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVA 554
Query: 822 ERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFW 881
E Y + S IW + +T +MGS IWR + + ++ F + +G+G FW
Sbjct: 555 E-YLIRKKS-IWSLKQST-SMGSW----IWRKILKIRDVAKSFSR---VEVGNGESASFW 604
Query: 882 RDPWVSNVALCHLF--PRLYAMSENKEARIAEVGT-YSRGKWGWSLTFRGQFFAWEEELY 938
D W ++ L + +EA +A+ T SR + SL + E Y
Sbjct: 605 YDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRHRTSLLNEIE----EMMAY 660
Query: 939 QQFLASINHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIAKLL- 997
Q+ I+H + D ++W + +F + H T W + K+ + +
Sbjct: 661 QR----IHH----SDAEDTVLW-RGKNDVF---------KPHFSTRDTWHLIKATSSTVS 702
Query: 998 ----------PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFL 1047
PK AL W A ++++ T +L + S C+ C ++ H+F
Sbjct: 703 WHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFF 762
Query: 1048 HCHSIWSLWCVI 1059
C ++W +
Sbjct: 763 SCSYASTVWAAL 774
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 298 bits (763), Expect = 8e-79
Identities = 228/723 (31%), Positives = 349/723 (47%), Gaps = 51/723 (7%)
Query: 413 DFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKL 472
+FF SG++ + NA + LIPK NA +++ +RPIS + + YK+I+K+L +RLQ ++ +
Sbjct: 352 EFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAV 411
Query: 473 LSQNQFAFTKERQIADCILLANEVADFLSKKSEGGL-MLKVDLAKAYDQVDWEFLINMLH 531
+ +Q AF R +A+ +LLA E+ ++ + MLKVDL KA+D V WEF+ L
Sbjct: 412 IGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALR 471
Query: 532 EMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCL 591
+ +++I+W+ CI++ S I VNG+ FF KGLRQGDPLSP LF L + S L
Sbjct: 472 ALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKL 531
Query: 592 LNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKVN 651
L + +L+I+HL+FADD ++F + + +C L F SGLKVN
Sbjct: 532 LYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVN 591
Query: 652 NQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCKT 711
KS+L + E A ++G+ GT PI YLG PL RI + P+LEKL +
Sbjct: 592 KDKSQLFQAGLDLSERITSA-AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARL 650
Query: 712 RSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKKI 771
RS+ SK +S +GR + SV+ + F M F PKG I ++E L F+W +K
Sbjct: 651 RSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKS 710
Query: 772 NWIGWDQICLNRKAGGLGL-GFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDS 830
+ + W CL + GGLG F EW N+ LLL+ W SLW + +R++ +
Sbjct: 711 SKVSWVDCCLPKSEGGLGFRSFGEW-NKTLLLRLIWVLFDRDTSLWAQW--QRHHRLGHA 767
Query: 831 LIWHMASTTPAMGSRAIQD---IWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVS 887
W + A+Q W++L L+ F + +G+G V FW D W S
Sbjct: 768 SFWQV---------NALQTDPWTWKMLLNLRPLAEKF---IKAKVGNGGTVSFWFDCWTS 815
Query: 888 NVALCHLFPRLYAMSE--NKEARI---AEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFL 942
L P + + + ++ RI A+V G GW L A + L
Sbjct: 816 ------LGPLIKYLGDVGSRPLRIPFSAKVADAIDGS-GWRLPLSRSLTA---DSILSHL 865
Query: 943 ASINHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSI-AKLLPPKV 1001
AS+ P V D WC + W E + + KS+ K PK
Sbjct: 866 ASLPPPSPLMV-SDSYSWCVDDVDCQGFSAAKTW-EVLRPRRPVKRWAKSVWFKGAVPKH 923
Query: 1002 ALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSLWCVI-- 1059
A FW AQ +++ TR L++ G L S +C C+ E+ +H+ L C +W ++
Sbjct: 924 AFNFWTAQLNRLPTRQRLVSWG--LVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFL 981
Query: 1060 --VNRERFLWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERNNICFNHKAL 1117
R+R L L+ P + K + L+ Y ++W +RN + H +L
Sbjct: 982 RLCPRQRLLCTWAELLSWTRQSTAAAPSLLRKVVAQLVVY----NLWRQRNLVL--HSSL 1035
Query: 1118 NIS 1120
+S
Sbjct: 1036 RVS 1038
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 296 bits (758), Expect = 3e-78
Identities = 227/802 (28%), Positives = 373/802 (46%), Gaps = 81/802 (10%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF S + +N I +IPK +N +L+ YRPI+L YK+I+K + RL+ + ++
Sbjct: 95 FFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIV 154
Query: 474 SQNQFAFTKERQIADCILLANEVADFLSKK---SEGGLMLKVDLAKAYDQVDWEFLINML 530
S +Q AF R I D +++A+E+ L + S+ + +K D++KAYD+V+W+FL +
Sbjct: 155 SDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 214
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F DKWI W+ + + S ++L+NGSP + S +G+RQGDPLSP LF LC + LS
Sbjct: 215 RLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSH 274
Query: 591 LLNQFLGEENYCGVRISRNL-TINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+ + GVRI I HL FADD+L FC+ N + L +V + + SG K
Sbjct: 275 LIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 334
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
+N QKS + G V RL YLG P ++ +N +++++K
Sbjct: 335 INVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVK 394
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+T S+++KF+S +G+ ++ KSV ++P++ M FK P+G++ E+E L F W + +
Sbjct: 395 ERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNK 454
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
+ I W+ W ++ ++K GGLG + N LL K AWR + NSL+ + RY D
Sbjct: 455 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKD- 513
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSN 888
+S+I + + G W L +L ++ IGDG ++ + N
Sbjct: 514 NSIIDAKTRSQQSYG-------WSSLLSGIAL---LRKGTRYVIGDGKTIRL----GIDN 559
Query: 889 VALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINH- 947
V H P +++ + ++ + RG W+ Q F+ +H
Sbjct: 560 VVDSH--PPRPLLTDEQHNGLSLDNLFQH---------RGHSRCWDNAKLQTFVDQSDHD 608
Query: 948 -----IIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTH----------------QM 986
+ D+LIW N TG ++V+ YWL H ++ ++
Sbjct: 609 YIKRIYLSTRSKTDRLIWSYNSTGDYTVRS-GYWLSTHDPSNTIPTMAKPHGSVDLKTKI 667
Query: 987 WQVPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIF 1046
W +P + PK+ F W+ + + T L RG+ ++ C C +ES NH
Sbjct: 668 WNLP------IMPKLKHFLWRILSKALPTTDRLTTRGMRIDPG--CPRCRRENESINHAL 719
Query: 1047 LHC---HSIWSLWCVIVNRERFLW-VMPASLADLILEWDFLPKISDKSLWSLIPYALSWS 1102
C W L + R L + ++++++L L + LIP+ L W
Sbjct: 720 FTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILL---LLQNTTITDSQKLIPFWLLWR 776
Query: 1103 IWIERNNICFNHKALNISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPS 1162
IW RNN+ FN N+ E ++R T+E L + R + +
Sbjct: 777 IWKARNNVVFN----NLRESPSITVVRAKAETNEWLNATQTQGPR--------RLPKRTT 824
Query: 1163 LLRAASWVTPDAGLIKINVDGA 1184
+WV P IK N D +
Sbjct: 825 AAGNTTWVKPQMPYIKCNFDAS 846
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 293 bits (750), Expect = 3e-77
Identities = 203/663 (30%), Positives = 317/663 (47%), Gaps = 56/663 (8%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF+S R MN I LIPK + YRPI+L YK++AK++ R+Q ++PKL+
Sbjct: 369 FFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLI 428
Query: 474 SQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
S+NQ AF R I+D +L+ +EV FL S K + +K D++KAYD+V+W+FL +L
Sbjct: 429 SENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVL 488
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F WI W+ C++S S + L+NG+P +GLRQGDPLSP LF LC LS
Sbjct: 489 QRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSG 548
Query: 591 LLNQFLGEENYCGVRISRN-LTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L + GVR+S N +NHLLFADDT+ F +++ L +L + ASG
Sbjct: 549 LCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQS 608
Query: 650 VNNQKSELI-------GCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNP 702
+N KS + Q + ++ G YLG P R+ +
Sbjct: 609 INFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTG------KYLGLPEHFGRRKRDIFGA 662
Query: 703 MLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIW 762
+++K++ K+ S+ S+F+S +G+ V+ K+VL S+PL+ M FK P + +++ L F W
Sbjct: 663 IIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWW 722
Query: 763 GQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIE 822
+ +K +W+ W ++ + AGGLG IE N LL K WR SL ++
Sbjct: 723 DTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLG 782
Query: 823 RYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWR 882
+Y S + + P+ G WR + + KE L I +G +V W
Sbjct: 783 KY-CHSSSFMECKLPSQPSHG-------WRSIIAGREI---LKEGLGWLITNGEKVSIWN 831
Query: 883 DPWVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFL 942
DPW+S L P A+ E+++ R++ + + +W W+ E L +Q
Sbjct: 832 DPWLS--ISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKI--AVILPNYENLIKQLP 887
Query: 943 ASINHIIPAAVGGDQLIWCANQTGLF---------SVKELCYWLEDHLFTHQMWQVPKSI 993
A P++ G D+L W ++G + SV + + +W++
Sbjct: 888 A------PSSRGVDKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTL- 940
Query: 994 AKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIW 1053
PK+ W+A + + L+ R I + S C C A ES H+F HC
Sbjct: 941 -----PKIKHLMWKAAMEALPVGIQLVRRHI--SPSAACHRCGA-PESTTHLFFHCEFAA 992
Query: 1054 SLW 1056
+W
Sbjct: 993 QVW 995
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411200|pir||G84473 hypothetical protein
At2g05980 [imported] - Arabidopsis thaliana
Length = 1352
Score = 290 bits (743), Expect = 2e-76
Identities = 212/729 (29%), Positives = 347/729 (47%), Gaps = 73/729 (10%)
Query: 412 EDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPK 471
+ FF G + +G+N + LI KK S + YRPIS YK+++K++A RL++++P
Sbjct: 644 QSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPA 703
Query: 472 LLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
++ NQ AF K+R + + +LLA+E V D+ + LK+D++KA+D V W FLIN+L
Sbjct: 704 SIAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVL 763
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
++ + +I W++ CI +AS ++ VNG + FF E+GLRQG LSP L+ +C+N LSC
Sbjct: 764 KAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSC 823
Query: 591 LLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKV 650
+L++ E+ RN+ + HL FADD ++F + ++ + F S LK+
Sbjct: 824 MLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKI 883
Query: 651 NNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCK 710
+ +KS + + + F + +GTLP+ YLG PL + P++EK++ +
Sbjct: 884 SLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRAR 943
Query: 711 TRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKK 770
S+ ++F+S +GRL + KSVL SI F + VF+ PK + E+EK+F AF+W K
Sbjct: 944 ITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTK 1003
Query: 771 INWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDS 830
I W ++C ++ GGLGL ++ N LLK WR +SLW +V +L
Sbjct: 1004 KAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWV--NKHLIRKE 1061
Query: 831 LIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVA 890
W + T +GS +WR + + + F + + G+ FW D W
Sbjct: 1062 TFWSVKENT-GLGSW----LWRKILKQRDKARLFHR---MEVRSGTFTSFWHDHWCPLGR 1113
Query: 891 L-CHLFPR-LYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHI 948
L H+ R + A +AEV R K F Q + + EL +Q
Sbjct: 1114 LHQHMGSRGTIDLGIPNNATVAEVMNTHRRK-RHRADFLNQIKS-QIELARQ-------- 1163
Query: 949 IPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIA-----------KLL 997
+ GD+ +W K+ + + + WQ +SI+
Sbjct: 1164 -DRSTDGDRSLW----------KQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSAS 1212
Query: 998 PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC----HSIW 1053
PK + W A ++++ T + + C+FC E+ +H+F C H +
Sbjct: 1213 TPKYSFVTWLAFHNRLTTSDKICK--WNSGARYDCVFCGEELETRDHLFFSCPYSSHVWF 1270
Query: 1054 SLWCVIVNRERFLWVMPASLADLILEWDFL-PKISDKSLWSLIPYALSW-------SIWI 1105
SL ++N IL W+ + P + D S L + L + S+W
Sbjct: 1271 SLTKGLLNGRN------------ILNWNLITPHLLDSSRPYLHVFTLRYAFQASIHSLWR 1318
Query: 1106 ERNNICFNH 1114
ERN C H
Sbjct: 1319 ERN--CRRH 1325
>gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 288 bits (738), Expect = 6e-76
Identities = 212/705 (30%), Positives = 345/705 (48%), Gaps = 57/705 (8%)
Query: 422 RGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFT 481
R +N +FITLIPK N S+N YRPISL+ +S KLI K+LA RLQ + L+ +NQ+ F
Sbjct: 1296 RSINTSFITLIPKSHNPVSVNDYRPISLLNTSMKLITKLLANRLQMKITDLVHKNQYGFI 1355
Query: 482 KERQIADCILLANEVADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWIS 541
++R I DC+ + E + +++K+D KA+D+++ + ++ ++ FG KW++
Sbjct: 1356 RQRTIQDCLAWSFEYLHLCHHSRKAIVIIKLDFEKAFDKMNHKAMLTIMKAKGFGQKWLN 1415
Query: 542 WMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENY 601
WMKS +S + +L+NG+P +G+RQGDPLSPLLF L + L L+N+ +
Sbjct: 1416 WMKSIFTSGTSNVLLNGTPGKTIHCLRGVRQGDPLSPLLFVLAADFLQSLINKAKCMDLL 1475
Query: 602 -CGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKVNNQKSELIGC 660
+ + N + +ADDTL+ E + QL L +++ TF A+GLKVN QKS ++
Sbjct: 1476 KLPIPMQTNQDFPIIQYADDTLIIAEGDTRQLLILKSIINTFSEATGLKVNLQKSMMLPI 1535
Query: 661 NVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCKTRSYNSKFMS 720
N+ ++ LA +FG S G+ P +YLG PLG I + P++ K + + S + F+S
Sbjct: 1536 NMDEERLDTLARTFGCSKGSFPFTYLGLPLGITKPTIQDYQPLINKCEARLGSV-ATFLS 1594
Query: 721 LSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIW-GQEQGRKKINWIGWDQI 779
+GRL +T +V ++P F M PK VI +++K +W G +K W +
Sbjct: 1595 EAGRLELTNAVFTALPTFYMCTLAIPKSVIHKIDKFRKHCLWRGNGINARKPPKAAWKLV 1654
Query: 780 CLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDSLIWHMASTT 839
C + GGLG+ IE +N LL+K +F + ++ W + +++ +
Sbjct: 1655 CKPKNEGGLGVIDIEKQNEALLMKNLDKFFNKKDTPWVQMIWDKH---------YAKGKL 1705
Query: 840 PAM---GSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVALCHLFP 896
P GS +DI ++L+ +KE LI + G + FW+D W + P
Sbjct: 1706 PGQIRKGSFWWRDILKLLDP-------YKEMSLIQMKGGESIVFWQDKWGMQKLRLEM-P 1757
Query: 897 RLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHIIPAAVGGD 956
L++ ++K AEV G+ ++ + QQ I+++ +
Sbjct: 1758 ELFSFVQHKFLSAAEV----LGQEDFTRLLQLPISETAFHQLQQLTTRIDNLERTQ---E 1810
Query: 957 QLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIAK-LLPPKVALFFWQAQNDKIAT 1015
Q W FS + L H Q+ +V K I K PK +FFW D+++T
Sbjct: 1811 QDQWKYKWGNNFSATKAYSELMGH---QQIHEVHKWIWKSFCQPKHKVFFWLLIKDRLST 1867
Query: 1016 RANLLARGIDLNGSTQCLFC-NAFDESCNHIFLHCHSIWSLWCVIVNRERFLWVMPASLA 1074
N+L R S C+ C +E+ +H+FLHC W ++
Sbjct: 1868 -CNILKRKNMQLQSYNCVLCLQNSEETTSHLFLHCAYARQCWQLLD-------------M 1913
Query: 1075 DLILEWDFLPKISD-------KSLWSLIPYALSWSIWIERNNICF 1112
D+ DF P+I+D + + L W+IW RNN+ F
Sbjct: 1914 DIPPNSDF-PEITDHFKHGFNNQFFMVTTILLCWAIWSTRNNLIF 1957
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488323|pir||T02730 RNA-directed DNA
polymerase homolog T9I4.6 - Arabidopsis thaliana
Length = 1529
Score = 287 bits (735), Expect = 1e-75
Identities = 200/674 (29%), Positives = 326/674 (47%), Gaps = 46/674 (6%)
Query: 403 SGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLA 462
+G F + FF G + +G+NA + LIPKK+ A + YRPIS YK+I+K+LA
Sbjct: 785 TGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILA 844
Query: 463 TRLQKVMPKLLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQV 521
RL+ ++P + QNQ AF KER + + +LLA E V D+ + +K+D++KA+D V
Sbjct: 845 NRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSV 904
Query: 522 DWEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLF 581
W+FL+N L +NF + + W+K CIS+A+ ++ VNG FF +GLRQG LSP LF
Sbjct: 905 QWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLF 964
Query: 582 NLCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLIT 641
+C+N LS ++++ N + + HL FADD ++F + ++ +E + NV
Sbjct: 965 VICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKE 1024
Query: 642 FLFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWN 701
F SGL+++ +KS + V + + SF ++ G LP+ YLG PL ++
Sbjct: 1025 FAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYS 1084
Query: 702 PMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFI 761
P++E +K K S+ ++ +S +GRL + SV+ SI F M ++ P G I E+EKL AF+
Sbjct: 1085 PLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFL 1144
Query: 762 WGQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLW----R 817
W K I W IC +K GGLG+ + N+ LK WR SLW
Sbjct: 1145 WSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIW 1204
Query: 818 FFVIERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSR 877
F+I + W A+ ++GS +W+ L + L+ + + + +GS
Sbjct: 1205 TFIIRK------GTFW-SANERSSLGSW----MWKKLLKYRELAKSMHK---VEVRNGSS 1250
Query: 878 VKFWRDPWVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEEL 937
FW D W HL RL ++ + R+ ++G L Q +
Sbjct: 1251 TSFWYDHW------SHL-GRLLDITGTR--RVIDLGIPLETNLETVLRTH-QHRQHRAAI 1300
Query: 938 YQQFLASINHI--IPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQ------- 988
Y + A I + G D +W + + F+ + + +++ THQ Q
Sbjct: 1301 YNRINAEIQRLQQQEREAGPDISLWRSLKND-FNKRFITKVTWNNVRTHQPQQNWYKGVW 1359
Query: 989 VPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLH 1048
P S PK + W ++++T + + + C CN +E+ +H+F
Sbjct: 1360 FPYS-----TPKYSFLLWLTVQNRLSTGDRI--KAWNSGQLVTCTLCNNAEETRDHLFFS 1412
Query: 1049 CHSIWSLWCVIVNR 1062
C +W + R
Sbjct: 1413 CQYTSYVWEALTQR 1426
>gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|25403016|pir||D86384
unknown protein [imported] - Arabidopsis thaliana
Length = 1213
Score = 286 bits (732), Expect = 3e-75
Identities = 224/740 (30%), Positives = 352/740 (47%), Gaps = 47/740 (6%)
Query: 389 PQGLTA-LI*NSFRNSGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPI 447
P G TA +S+ GA ++FFSSG + + NA I LIPK N + + +RPI
Sbjct: 467 PDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPI 526
Query: 448 SLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKERQIADCILLANEVADFL--SKKSE 505
S + + YK+IA++L RLQ+++ ++S Q AF R +A+ +LLA ++ S S
Sbjct: 527 SCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISP 586
Query: 506 GGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFS 565
G MLKVDL KA+D V WEF+I L + +K+I+W+ CIS+ + + +NG FF
Sbjct: 587 RG-MLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFK 645
Query: 566 IEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFC 625
KGLRQGDPLSP LF L + S LL+ + NL+I+HL+FADD ++F
Sbjct: 646 STKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFF 705
Query: 626 ENNELQLETLCNVLITFLFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISY 685
+ L +C L F SGLKVN KS L + +E A ++G+ +GTLPI Y
Sbjct: 706 DGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANA-AYGFPIGTLPIRY 764
Query: 686 LGAPLGGNPRRIVFWNPMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKA 745
LG PL RI + P+LEK+ + RS+ +K +S +GR+ + SV+ F M F
Sbjct: 765 LGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLL 824
Query: 746 PKGVILEVEKLFHAFIWGQEQGRKKINWIGWDQICLNRKAGGLGL-GFIEWRNRGLLLKW 804
PKG I +E L F+W + K + W +CL + GGLGL +EW N+ L ++
Sbjct: 825 PKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEW-NKTLSMRL 883
Query: 805 AWRFGREINSLWRFFVIERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGF 864
WR +SLW + ++L S W + G ++ W+ L L+ F
Sbjct: 884 IWRLFVAKDSLWADWQ-HLHHLSRGS-FWAVE------GGQSDSWTWKRLLSLRPLAHQF 935
Query: 865 KENLLISIGDGSRVKFWRDPWVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSL 924
L+ +G+G + +W D W S L + + S + +A+V + + + GW L
Sbjct: 936 ---LVCKVGNGLKADYWYDNWTSLGPLFRIIGDI-GPSSLRVPLLAKVAS-AFSEDGWRL 990
Query: 925 TFRGQFFAWEEELYQQFLASINHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTH 984
A + L ++ A D+ W N +L
Sbjct: 991 PVSRSAPA---KGIHDHLCTVPVPSTAQEDVDRYEWSVNG-----------FLCQGFSAA 1036
Query: 985 QMWQV--PKSIAKL---------LPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCL 1033
+ W+ PK+ K PK A W + +++ TR L + G S C+
Sbjct: 1037 KTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWG--HIQSDACV 1094
Query: 1034 FCNAFDESCNHIFLHCHSIWSLWCVIVNRERFLWVMPASLADLILEWDFLPKISDKSLWS 1093
C+ ES +H+ L C +W ++ R + +S ++L+ + L
Sbjct: 1095 LCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELLSWVRQSSPEAPPLLRK 1154
Query: 1094 LIPYALSWSIWIERNNICFN 1113
++ + +++W +RNN+ N
Sbjct: 1155 IVSQVVVYNLWRQRNNLLHN 1174
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 285 bits (729), Expect = 7e-75
Identities = 196/664 (29%), Positives = 319/664 (47%), Gaps = 45/664 (6%)
Query: 412 EDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPK 471
E FF +G + N + LIPK + + RPISL YK+I+K+L+ RL+K +P
Sbjct: 201 ELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPV 260
Query: 472 LLSQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLIN 528
++S Q AF ER ++D I+LA+E+ L K S+ ++ K D++KAYD+V+W FL
Sbjct: 261 IVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKG 320
Query: 529 MLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGL 588
+L + F WI+WM +C+SS S ++L+NG P + +GLRQGDPLSP LF LC L
Sbjct: 321 ILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEAL 380
Query: 589 SCLLNQFLGEENYCGVRIS-RNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASG 647
+LNQ G++ + ++NHLLFADDTLL C+ ++L+ + + L + SG
Sbjct: 381 IHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISG 440
Query: 648 LKVNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEK 706
+N++KS + G V + + + G YLG P + V + + EK
Sbjct: 441 QMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEK 500
Query: 707 LKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQ 766
L+ + + +K +S G+ ++ KS+ + P++ M F+ K + ++ + F W Q
Sbjct: 501 LQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQ 560
Query: 767 GRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNL 826
+KKI+WIG ++ L + GG G ++ N+ LL K A R + +SL + RY +
Sbjct: 561 DKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYM 620
Query: 827 DPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWV 886
+ D L + G+R +L L +G K+ IG+G W D W+
Sbjct: 621 NSDFL-------SATKGTRPSYAWQSILYGRELLVSGLKK----IIGNGENTYVWMDNWI 669
Query: 887 SNVALCHLFPRLYAMSENKEARIAE-VGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASI 945
+ P + + + ++++ + +SR W+L F W+E + I
Sbjct: 670 FDDKPRR--PESLQIMVDIQLKVSQLIDPFSRN---WNLNMLRDLFPWKE------IQII 718
Query: 946 NHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIAKLLP------- 998
P A D W GL++VK Y L QM++ + L P
Sbjct: 719 CQQRPMASRQDSFCWFGTNHGLYTVKSE-YDLCSRQVHKQMFKEAEEQPSLNPLFGKIWN 777
Query: 999 ----PKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC---HS 1051
PK+ +F W+ +A L RG+ + C C +E+ NHI C
Sbjct: 778 LNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDG--CSMCPEKNETLNHILFQCPLARQ 835
Query: 1052 IWSL 1055
+W+L
Sbjct: 836 VWAL 839
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412166|pir||H84629 hypothetical protein
At2g23880 [imported] - Arabidopsis thaliana
Length = 1216
Score = 282 bits (721), Expect = 6e-74
Identities = 214/732 (29%), Positives = 353/732 (47%), Gaps = 60/732 (8%)
Query: 412 EDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPK 471
+ FF+ G + +G+N+ + LIPKK+ A + YRPIS YK I+K+LA RL++++PK
Sbjct: 218 QSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPK 277
Query: 472 LLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
+ NQ AF K+R + + +LLA E V D+ +K+D++KA+D + W FL ++L
Sbjct: 278 FIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVL 337
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
MNF ++I W+ C+S+AS +I VNG +F +GLRQG LSP LF + ++ LS
Sbjct: 338 AAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSR 397
Query: 591 LLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKV 650
+L++ G + + L + HL FADD ++ + ++ + VL F GLK+
Sbjct: 398 MLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKI 457
Query: 651 NNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCK 710
+K+ L V + ++ + + VG LP+ YLG PL ++P++++++ +
Sbjct: 458 CMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRR 517
Query: 711 TRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKK 770
+ S+++S +GRL + SVL SI F M F+ P+ I E+ ++ A +W + K
Sbjct: 518 IGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPK 577
Query: 771 INWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDS 830
+ WD+IC +K GGLGL + N+ LK WR +SLW + R NL
Sbjct: 578 KAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWT--RMNLLKKE 635
Query: 831 LIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVA 890
W + T +GS IWR L + ++ F + I + +G FW D W
Sbjct: 636 SFWSI-GTHSTLGSW----IWRRLLKHREVAKSFCK---IEVNNGVNTSFWFDNWSEKGP 687
Query: 891 LCHLFPRLYA--MSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHI 948
L +L A M ++ +AE + R K R + EE+ Q N
Sbjct: 688 LINLTGARGAIDMGISRHMTLAEAWSRRRRK-----RHRVEILNEFEEILLQKYQHRNIE 742
Query: 949 IPAAVGGDQLIWCANQ---TGLFSVKELCYWLEDHLFT---HQMWQVPKSIAKLLPPKVA 1002
+ D ++W + FS K+ W +H+ T + W A PK +
Sbjct: 743 LE-----DAILWRGKEDVFKARFSTKDT--W--NHIRTSSNQRAWHKGVWFAH-ATPKFS 792
Query: 1003 LFFWQAQNDKIATRANLLARGIDLNGS-TQCLFCNAFDESCNHIFLHC---HSIWSLWCV 1058
W A ++++T ++ NG+ T C+FC++ E+ +H+F C IW+
Sbjct: 793 FCAWLAIRNRLSTGDRMMTWN---NGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAK 849
Query: 1059 IVNRERFLWVMPASLADLILEWDFLPK-ISD------KSLWSLIPYALS-WSIWIERNNI 1110
V ++RF +W + ISD +S S + +S SIW ERN+
Sbjct: 850 NVYKDRF-----------STKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSIWRERNSR 898
Query: 1111 CFNHKALNISEI 1122
K+ + S +
Sbjct: 899 RHGEKSRSASNL 910
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 282 bits (721), Expect = 6e-74
Identities = 250/912 (27%), Positives = 405/912 (43%), Gaps = 82/912 (8%)
Query: 424 MNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKE 483
M + F+ LIPK E L +RPISL YK+++K L RL+ ++ +L+S Q AF
Sbjct: 1 MRSTFV-LIPKIEQPMELRDFRPISLCNVIYKVVSKCLVNRLRPILDELVSPCQSAFVPG 59
Query: 484 RQIADCILLANEVADFLSKKSE---GGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWI 540
R I D +LA E + K + K+D++KAYD+VDW FL E+ F +W+
Sbjct: 60 RMITDNAILAFECFHSIQKNRKPENAACAYKLDISKAYDRVDWGFL-----ELGFAHRWV 114
Query: 541 SWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEEN 600
W+ CI++ ++ NG+ F+ +GL QG PLSP LF +GL LL + +
Sbjct: 115 RWIIVCITTVRYSVKFNGTLLSTFAPSRGLCQGVPLSPFLFLFIADGLPLLLEDKVAQGA 174
Query: 601 YCGVRISRNLT-INHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKVNNQKSELI- 658
V+I R I+HLLFADDTLLF + + +Q + + V+ + A+G +N K ++
Sbjct: 175 LSPVKICRQAPGISHLLFADDTLLFFKADNVQAQAVKEVITDYALATGQLINPAKCSIMF 234
Query: 659 --GCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCKTRSYNS 716
QT +V R+ S YLG P + + E++ + +
Sbjct: 235 GESSPPQTRDVIRVTLQIANS--GFEDRYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGE 292
Query: 717 KFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKKINWIGW 776
+S G+ V+ KSV+ +IP+++M +F P+ V E+ KL F WG E+G++K +W W
Sbjct: 293 NLLSSGGKEVLIKSVIQTIPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGKRKTHWKSW 352
Query: 777 DQICLNRKAGGLGLGFIEWR--NRGLLLKWAWRFGREINSLWRFFVIERYNLDPDSLIWH 834
+ CL R GLGF ++R N+ LL + AWR +SL + +Y SL+
Sbjct: 353 E--CLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKY-FPNGSLV-- 407
Query: 835 MASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVALCHL 894
+ G A +W+ + SL KE ++ IG+G V+ WRDPW+
Sbjct: 408 ----DTSFGGNA-SPVWKAIEYGLSL---LKEGIIWRIGNGKSVRIWRDPWL-------- 451
Query: 895 FPRLYA---MSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHIIPA 951
PR ++ ++ R+ V W T Q F + + + SI + +
Sbjct: 452 -PRDFSRRPITRKGNCRLKWVSELLSENGAWDETRVNQVFL---PVDAEAICSIR--VSS 505
Query: 952 AVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQ------------MWQVPKSIAKLLPP 999
D + W ++ G FSV+ Y L +L + MW + P
Sbjct: 506 RQEDDFVAWHPDKHGKFSVRS-AYGLACNLVNMETSSSSSSARCKRMWNLIWQTNA--PQ 562
Query: 1000 KVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSLWCVI 1059
KV +F W+A + +AT N R L S CL C E H+ C +LW +
Sbjct: 563 KVRIFAWRAATNCLATMENKAKR--KLEQSDICLVCGLEKEDTKHVLCRCPDARNLWGAM 620
Query: 1060 VNRERFLWVMPASLADLILEWDFLPKISD--KSLWSLIPYALSWSIWIERNNICFNHKAL 1117
D +D L + D ++++ LI W IW RN I +
Sbjct: 621 CEAGNISLNGGNLCNDPGWIFDQLEILLDYERTVFLLI----LWRIWFVRNEIVHGKQPP 676
Query: 1118 NISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRF-------ASKPSLLRAASWV 1170
I F + + LL + + + I F A +P + W
Sbjct: 677 PIEASKRF----LESYVKSLLEIRQHPQANVEKGKHVISFVNGKTNPARRPPEDKNQKWR 732
Query: 1171 TPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGE-GYAFEAEVLAIHEA 1229
P G +K+NVDG+ G GIG ++R+ + ++ K + G A E+E+LA E
Sbjct: 733 KPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSGKVIFACCKHLPRCGSALESEILACKEG 792
Query: 1230 LLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCLKVNHIYRE 1289
+L +Q LR ++E+D + V + ++ ++ + + L +++ I+R
Sbjct: 793 ILVGLQWSLRQFVVETDCLMVVQMLESKEREMSEVAFLVKEATELLSGDREIQLRKIHRS 852
Query: 1290 ANGEADKLAKRG 1301
N + LA +G
Sbjct: 853 QNSVSHLLANKG 864
>pir||A96519 protein T2E6.4 [imported] - Arabidopsis thaliana
gi|9802583|gb|AAF99785.1| T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 281 bits (718), Expect = 1e-73
Identities = 163/484 (33%), Positives = 263/484 (53%), Gaps = 11/484 (2%)
Query: 403 SGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLA 462
+G F + FF G + +G+NA + LIPKK+ A+ + YRPIS YK+I+K++A
Sbjct: 61 TGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIA 120
Query: 463 TRLQKVMPKLLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQV 521
RL+ ++P + QNQ AF +ER + + +LLA E V D+ +K+D++KA+D V
Sbjct: 121 NRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSV 180
Query: 522 DWEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLF 581
W+FL+N L +NF + + W+K CIS+A+ ++ VNG FF ++GLRQG LSP LF
Sbjct: 181 QWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLF 240
Query: 582 NLCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLIT 641
+C+N LS +++ N + L++ HL FADD ++F + + +E + N+
Sbjct: 241 VICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKE 300
Query: 642 FLFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWN 701
F SGL ++ +KS L V + + +F ++ G LP+ YLG PL ++
Sbjct: 301 FAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYS 360
Query: 702 PMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFI 761
P+L+K++ K S+ ++ +S +GRL + SV+ S+ F M ++ P G I E+EKL AF+
Sbjct: 361 PLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFL 420
Query: 762 WGQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVI 821
W + K I W +C ++ GGLG+ + N+ LK WR +SLW +V
Sbjct: 421 WSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWV- 479
Query: 822 ERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFW 881
Y + S W A+ ++GS +W+ L + ++ K + I GS FW
Sbjct: 480 WTYIIRKGS-FW-SANDRSSLGSW----MWKKLLKYRDVA---KSMCKVEIKSGSSTSFW 530
Query: 882 RDPW 885
D W
Sbjct: 531 YDNW 534
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 279 bits (713), Expect = 5e-73
Identities = 185/663 (27%), Positives = 314/663 (46%), Gaps = 41/663 (6%)
Query: 413 DFFSSGRISRG-MNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPK 471
D GR+ +N I+LIPK ++A+++ +RPI L+ +KLI K+L RL V
Sbjct: 198 DLLFEGRLDLWRINYGVISLIPKVKDANTIKAFRPICLLNVCFKLITKILTNRLTLVAHN 257
Query: 472 LLSQNQFAFTKERQIADCILLANEVADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINMLH 531
++ ++Q AF R I D +++ +EV + K + G++LK+D KAYD+V W FL ++L
Sbjct: 258 VIGESQTAFIPGRFILDGVIILHEVLHEVKKTHQSGIILKLDFEKAYDKVQWSFLFDVLQ 317
Query: 532 EMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCL 591
+ F DKWI W+KS +AI +NG +F +G+RQGDPLSPLLFN+ + LS +
Sbjct: 318 KKGFDDKWIKWIKSATIDGRVAININGEIDQYFKTFRGVRQGDPLSPLLFNIVADALSEI 377
Query: 592 LNQFLGEENYCGV---RISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGL 648
L + + G+ + LT HL +ADDT+LF NN+ + T +L F SGL
Sbjct: 378 LLKAKEAGHLEGLVPHLVQGGLT--HLQYADDTILFMTNNDQNVITTKFILHCFEAMSGL 435
Query: 649 KVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
K+N QKSE+I E +R+A F G P++YLG P+ +K++
Sbjct: 436 KINYQKSEVIVLGENPEETKRVADLFNCKCGKFPMTYLGIPISEGRLTAADLAIPPDKIE 495
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+ ++ +S G+ ++ S P+++M + P+ ++ + F W + +
Sbjct: 496 KRLSTWKCGLLSYGGKAILVN----SSPMYMMGFYMLPEQTHQRMDSIRSRFFWEGIERK 551
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
+K + + W+ +C + GGLG N+ LL KW ++ + +Y ++
Sbjct: 552 RKYHMVKWEALCRPKDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLRRKYMMNG 611
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSN 888
+ WR L H + K +GDGS +FW D W+ +
Sbjct: 612 GGFF--------QSSTEGCSQFWRGL---HEVKHWLKLGSCYDLGDGSATRFWDDVWLGD 660
Query: 889 VALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHI 948
L FP +Y++ + ++++ + GW + R A E ++Q LA + +
Sbjct: 661 TPLKIKFPYIYSIVADPGKTVSQLWSSD----GWRIDLRRSLGAEELVEWEQLLADLAN- 715
Query: 949 IPAAVGGDQLIWCANQTGLFSVK----ELCYWLEDHLFTHQMWQVPKSIAKLLPPKVALF 1004
+ + D++ W ++G FS K E+ + + ++W+ P +P K+ +F
Sbjct: 716 VHLSTDRDRMRWKLTKSGQFSTKSLYREMTFGGIRDIKMQELWKTP------MPLKIKIF 769
Query: 1005 FWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSLWCVIVNRER 1064
W +I L + + NG C C A +E +H+ C LWC R+
Sbjct: 770 VWLMLKGRIQAAHQL--KKMKWNGDPLCKLCGA-EEDVDHLMFKCAPARFLWCCF--RDV 824
Query: 1065 FLW 1067
F W
Sbjct: 825 FHW 827
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.335 0.145 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,196,852,925
Number of Sequences: 2540612
Number of extensions: 90596788
Number of successful extensions: 280885
Number of sequences better than 10.0: 1625
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 653
Number of HSP's that attempted gapping in prelim test: 277141
Number of HSP's gapped (non-prelim): 2431
length of query: 1310
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1170
effective length of database: 507,674,714
effective search space: 593979415380
effective search space used: 593979415380
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0009.7