BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0009.6
         (309 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF78233.1| 162R [porcine adenovirus 3]                             36  1.3
gb|AAW27042.1| unknown [Schistosoma japonicum]                         35  3.6
emb|CAC36921.1| SPAPB1E7.04c [Schizosaccharomyces pombe] gi|1911...    34  4.8
ref|XP_379648.2| PREDICTED: hypothetical protein XP_379648 [Homo...    34  6.2

>gb|AAF78233.1| 162R [porcine adenovirus 3]
          Length = 162

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 30/108 (27%), Positives = 46/108 (41%), Gaps = 3/108 (2%)

Query: 35  GGFSSTLGGSFTQISGFVLVFLLGHHHL---PLTAATLSSTAIPVAAAATLASSSLFRRH 91
           GG++ST  GS +  +  V         +   P   AT SST I  +++++ AS ++ R  
Sbjct: 52  GGWASTPAGSGSPTTVIVRTISSSSSSMVFAPAPGATSSSTTISSSSSSSAASEAVARSC 111

Query: 92  LPPGCQSSRSGTVLLRSRCRVDPYLVPLKHTGFAFRRRSTTSAEPFCC 139
           +    +SS S      S CR+ P        G   R     +A P CC
Sbjct: 112 ISTTSRSSCSCCRSSASACRIMPTSALRSTDGNTARNTDPVAAVPGCC 159


>gb|AAW27042.1| unknown [Schistosoma japonicum]
          Length = 306

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 82  LASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDPYLVPLKHTGFAFRRRSTTSAEPFCCKE 141
           L SS L    L P    + S  +LL +  +  PY VP+ HT      RS TS        
Sbjct: 91  LTSSQLMAERLSPKKSLTTSVCILLNTESK--PYDVPINHTVLPSANRSQTSQSTLFAN- 147

Query: 142 GARVKNVNRTTINHALITRSVFINQTLVPVSLELKDTVVRAYRTDPVQRFLYQRVPKN-E 200
                N+     N +++TRS   + +L+P S         +  T      +  ++P N E
Sbjct: 148 ----PNLINLVRNRSILTRSSSSSVSLLPDS-------GSSVSTGHSSTSIPSQLPVNGE 196

Query: 201 SHIFRPWIYKREEGKDDTVANP 222
           SH+  P  + +    +  ++NP
Sbjct: 197 SHLDTPGRFSKLNDCNKKLSNP 218


>emb|CAC36921.1| SPAPB1E7.04c [Schizosaccharomyces pombe]
           gi|19115042|ref|NP_594130.1| hypothetical protein
           SPAPB1E7.04c [Schizosaccharomyces pombe 972h-]
          Length = 1236

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 17  NSKDKSNPTILGRFLPTSGGFSSTLGGSFTQISGFVLVFLLGHHHLPLTAA--TLSSTAI 74
           +S   S+ TIL    P++   SS +  S + ISG   +       +P++++  T SS+ I
Sbjct: 615 SSSISSSSTILSSPTPST---SSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVI 671

Query: 75  PVAAAATLASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDPY---LVPLKHTGFAFRRRST 131
           P ++    +SSSL     P    +S S + +  S   V  Y   L  + H+  +    S+
Sbjct: 672 PSSSTLVSSSSSLIVSSSP---VASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSS 728

Query: 132 TSAEPFCCKEGARVKNVNRTTINHALITRSVFINQTLV 169
           +SA P        +   +  T+  ++ + S  ++ T V
Sbjct: 729 SSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTV 766


>ref|XP_379648.2| PREDICTED: hypothetical protein XP_379648 [Homo sapiens]
          Length = 574

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2   VKSTPRIDQRMKKIHNSKDKSNPTILGRFLPTSGGFSSTLGGSFTQISGFVLVFLLGHH 60
           +++T R+   M  I   ++     + GR L   GG  ST GGSF Q +  ++  ++G H
Sbjct: 119 LRNTSRLFAAMGCIEKVQENQKNKVRGR-LSQQGGAQSTAGGSFLQAAALLVTLIIGGH 176


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,183,369
Number of Sequences: 2540612
Number of extensions: 21239818
Number of successful extensions: 47412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 47410
Number of HSP's gapped (non-prelim): 6
length of query: 309
length of database: 863,360,394
effective HSP length: 127
effective length of query: 182
effective length of database: 540,702,670
effective search space: 98407885940
effective search space used: 98407885940
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 75 (33.5 bits)