BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.12
(1387 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23078.1| polyprotein [Glycine max] 1204 0.0
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 1029 0.0
gb|AAL75999.1| putative polyprotein [Zea mays] 1015 0.0
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 981 0.0
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 979 0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 974 0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 962 0.0
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 939 0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 937 0.0
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 935 0.0
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 934 0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 897 0.0
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon... 894 0.0
gb|AAL76001.1| putative gag-pol polyprotein [Zea mays] 890 0.0
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop... 882 0.0
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 882 0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 873 0.0
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 873 0.0
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon... 792 0.0
ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|1545160... 769 0.0
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 1204 bits (3115), Expect = 0.0
Identities = 635/1360 (46%), Positives = 857/1360 (62%), Gaps = 64/1360 (4%)
Query: 53 KSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQ 112
+S+KL FDG ++W+F AEQFF + TP A RL + S ++ D + WY+ +
Sbjct: 96 RSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEP 155
Query: 113 LSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLD 172
S W+AFTRAL + FGPSAY+ + LFKL Q++TV EY +F + N+V GLS EA+LD
Sbjct: 156 FSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEAILD 215
Query: 173 CFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKE---------------SRSSQQR 217
CF+SGL EI R++ ++P ++++A+ +AK E K S +S +
Sbjct: 216 CFVSGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARNFTSNTSATQ 275
Query: 218 VFRPNQSHFTSPSTAIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFN 277
+ P +P + P P P + KP + IK+++ A++Q RR LC+
Sbjct: 276 KYPPTNQKNDNPKPNLPPLLPTP------STKPFNLRNQNIKKISPAEIQLRREKNLCYF 329
Query: 278 CDEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQAL 337
CDEK++ HKC R +L+ +E E Q +D VT + + LS A+
Sbjct: 330 CDEKFSPAHKCPNRQVMLLQLEETDEDQ-------TDEQVMVTEEANMDDDTHHLSLNAM 382
Query: 338 HGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAH 397
G T++FT V G V +LVD GSS+NF+ PR L L V P P V+VGNG
Sbjct: 383 RGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQI 442
Query: 398 IPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVN 457
+ G + + + G +P Y++ + GAD +LG WL TLG ++D++ ++ F N
Sbjct: 443 LSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQN 502
Query: 458 GKTCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTP 517
K TL+GE + A +HF+RL +T +I EC I + P TL++L
Sbjct: 503 DKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQK--EVPED---TLKDL--- 554
Query: 518 PPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMA 577
P + DP L LL +YA VF+ P LPP R DH I L + PV VRPYRYPH+QK+ +
Sbjct: 555 PTNIDPELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIE 614
Query: 578 TILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELL 637
++ +ML +GI+ PS SP+S P+LL+KKKDG+WRFC D+R+LN+IT+KD FP+PT+DELL
Sbjct: 615 KMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELL 674
Query: 638 DELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAM 697
DEL GA +FSKLDLRSG+HQI + ED KTAFRT GHYE+LVMPFGLTNAP+TFQ M
Sbjct: 675 DELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLM 734
Query: 698 NDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVS 757
N + + LR+FVLVFFDDIL+YS S H+ HL+ VL+ L H+ +A+LSKC FG T V
Sbjct: 735 NKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVD 794
Query: 758 YLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDL 817
YLGH +S GV + +KVQA++DWP P N+ LRGFLGLTG+YRRFIK+YA A LTDL
Sbjct: 795 YLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDL 854
Query: 818 LKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLS 877
L++D W++ A +F LK + APVL LPDFS F +ETDASG VGAVL
Sbjct: 855 LQKDS------FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 908
Query: 878 QKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMT 937
Q GHPI++FSKKL +MQ QS Y RE+ A+TEA+ K+R YL+G+KF I TDQ+SLK LM
Sbjct: 909 QNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMD 968
Query: 938 QTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRC--------HSSELPLLAA--I 987
Q+ QTP+Q W K LG+D++I YKPG +N+ ADALSR HS L L A I
Sbjct: 969 QSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEPHSIFLEELRARLI 1028
Query: 988 SSPVPEIITQLKQYYKTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILS 1047
S P + QL + YK + H+ V +LY+KD + +P ++ IL
Sbjct: 1029 SDPH---LKQLMETYK---------QGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQ 1076
Query: 1048 EYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPL 1107
EYH+SP GH+G+ TLARL A F WP +Q + K +I++CL CQ K +GLLQPL
Sbjct: 1077 EYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL 1136
Query: 1108 PTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEI 1167
P P Q+WED++MDFITGLP S G +V V++DRL+KYAHF+ L A++ + +A F S I
Sbjct: 1137 PIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHI 1196
Query: 1168 CRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLR 1227
+LHGIPRSIVSDRD++F S FW+ LF++ GT L S+AYHP++DGQ+EV+N+ LE YLR
Sbjct: 1197 VKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLR 1256
Query: 1228 CFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDE 1287
CF E P+ W K L AE WYNT++H + GMTPF+A+YGR PP+L + E
Sbjct: 1257 CFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVRE 1316
Query: 1288 SLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSN 1347
L R +L LK NL RAQ MK Q DK R +V+F+ VL++LQPYRQ S R +
Sbjct: 1317 QLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQ 1376
Query: 1348 KLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
KL+ R++GPF+V +IG VAY+L+LP +++H VFHVS L
Sbjct: 1377 KLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQL 1416
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 1029 bits (2660), Expect = 0.0
Identities = 578/1387 (41%), Positives = 813/1387 (57%), Gaps = 56/1387 (4%)
Query: 24 PTNNTFPAGFVSPPLGFNSPPQTNPQTLPKSLK-------------LQLTSFDGSKPLEW 70
P+++ FP+ +P GF + P QT P + +++G +W
Sbjct: 188 PSSSGFPS---NPSTGFQTTPTFQTQTFPPQSAPHQPRFEAAPRRTVDYPAYEGGNADDW 244
Query: 71 LFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLSFWEAFTRALAIRFGPS 130
LF EQ F ++T ++LE + G +++W+R + Q+ W F +RF PS
Sbjct: 245 LFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWWRCSKDREQIYTWREFQEKFMLRFRPS 304
Query: 131 AYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLDCFISGLVPEIKRELAILK 190
+ L ++QT TV EY+ RFE+++ + ++ + + F++GL ++ ++ +
Sbjct: 305 RGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPHVTSDILESAFLNGLRRSLRDQVVRCR 364
Query: 191 PYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHF-TSPSTAIVPSQPRPLASSSQAPK 249
P +++ + IAK IE++ + + S Q R NQ+ T+P V + R + +
Sbjct: 365 PVNLADIVEIAKLIESQERNAVSYQVR----NQARTNTAPFNNQVSTGSRVVDRA----- 415
Query: 250 PVASSSLPIKRLNSAQMQ-ERRALGLCFNCDEKYTIGHKCQP-RLFLLMLADEVQETQEA 307
P +P + A E R C C +++ GHKC+P +L L + +EV+E
Sbjct: 416 PTRQPFIPSRDTTRASGSGEARNSNPCRYCGDRWFQGHKCKPQKLKGLAITEEVEEESPL 475
Query: 308 AISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSN 367
L E+ P E ++ +L+ +++K + VV+LVD+G++
Sbjct: 476 IEELNEPLTEEEGDPEPAEGFKV-MTLSSLNDESQEQSMKMRGYIGNTKVVLLVDSGATC 534
Query: 368 NFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQG 427
NF+ V VT +F V VG G I +G DI + G F +Y+ DL
Sbjct: 535 NFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKCVDIPLEVQGIEFVQDYYLFDLGD 594
Query: 428 ADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLPPPSHASFNHFQRLIHTDA 487
D VLG WL LG+ +++ +S+ + +L G+P S +R+I
Sbjct: 595 LDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLYGDPDLCRGQISMRSMERVIKYTG 654
Query: 488 IAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRF 547
A + L L PA+ LL Y VF TP LPP R
Sbjct: 655 TAYLLELASLFESKKQEEQTAL------------QPAIQRLLDQYQGVFQTPQLLPPVRN 702
Query: 548 HDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKD 607
+H I L + PVN+RPYRY +QK + ++ +ML I+ PS SPYSSPVLL+KKKD
Sbjct: 703 REHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPSVSPYSSPVLLVKKKD 762
Query: 608 GTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHK 667
G WRFCVD+R+LN TI D++PIP I+ELLDEL GA+ FSKLDL+SG+ QIR+ D K
Sbjct: 763 GGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKSGYFQIRMKLSDVEK 822
Query: 668 TAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHM 727
TAF+T +GHYEFLVMPFGLTNAPSTFQ+ MNDL RP+LR+FVLVFFDDILVYSP + H+
Sbjct: 823 TAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTHL 882
Query: 728 THLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNL 787
HL+ VL++L H+FYA KC FG T +SYLGHIIS GV DP KV+A++ WP+P+++
Sbjct: 883 KHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPEKVEAMLQWPLPKSV 942
Query: 788 TALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLII 847
T LRGFLG TG+YRRF+KNY A L D LK++ D W+ AA +FQ LK +
Sbjct: 943 TELRGFLGFTGYYRRFVKNYGQIARPLRDQLKKNSFD------WNEAATSAFQALKAAVS 996
Query: 848 SAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAV 907
+ PVLVLPDF F +ETDASG +GAVLSQ I+F S+ + Q + +S Y RE+ A+
Sbjct: 997 ALPVLVLPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRSVYERELLAI 1056
Query: 908 TEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSEN 967
+AV KW+ YL +F I TDQ+SL+HL+ Q + Q +WA+KL G Y I YKPG +N
Sbjct: 1057 VKAVTKWKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRIEYKPGVDN 1116
Query: 968 RVADALSRCHSSELPLLAAISSPVPEIITQLK-QYYKTPEGIQLIVDKSTLPH----FRV 1022
+VADALSR +E I+ P +T LK + + E Q++ + + H F V
Sbjct: 1117 KVADALSRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKNWAQGDHHDSDFTV 1176
Query: 1023 HHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKT 1082
++Y K L +P + +L ++H SP GH G T RL + W G++ +
Sbjct: 1177 ADGLIYRKGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYWRGLRKDVVN 1236
Query: 1083 FIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLS 1142
+IK C CQ NKY +GLL PLP P QIW D+S+DF+ GLP S+ V+VDRLS
Sbjct: 1237 YIKGCQICQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNCILVVVDRLS 1296
Query: 1143 KYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLR 1202
KY+HF+ L FTA ++ F ++ +LHG P ++VSDRD+IFLS FW +LF++ GT L+
Sbjct: 1297 KYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQ 1356
Query: 1203 FSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQ 1262
STAYHP+TDGQTEVVNR LE+YLRCFAG +P SW+++L AE WYNTS+HSA TPFQ
Sbjct: 1357 KSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSATKTTPFQ 1416
Query: 1263 AVYGRPPPSLLAY--VPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRRE 1320
AVYGR PP LL Y +P ++A +++E L+ R +L L+ NL+ AQ +MK DKSRR+
Sbjct: 1417 AVYGREPPVLLRYGDIPTNNA--NVEELLKDRDGMLVELRENLEIAQAQMKKAADKSRRD 1474
Query: 1321 VTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHN 1380
V FE + WV L+L+PYRQ S+AHR + KL++R++GPF+V RIG VAY+L LP S +H
Sbjct: 1475 VAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEHSTIHP 1534
Query: 1381 VFHVSLL 1387
VFHVS L
Sbjct: 1535 VFHVSQL 1541
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 1015 bits (2624), Expect = 0.0
Identities = 572/1382 (41%), Positives = 782/1382 (56%), Gaps = 74/1382 (5%)
Query: 24 PTNNTFPAGFVSPPLGFNSPPQTNPQTLPKSLKLQLTSFDGS-KPLEWLFHAEQFFQLHQ 82
PT T +G V P G P QT P+ K+ ++DGS PL WL EQFF+ +
Sbjct: 442 PTTQTASSGVVEPAAGLGYSPAA--QTPPRYYKIDFPTYDGSVDPLNWLNQCEQFFRGQR 499
Query: 83 TPPAQRLELVSFYMQGDALSWYRWMHNNYQLSFWEAFTRALAIRFGPSAYENHQQELFKL 142
T R L S++++G A +WY + + + W F +RFGP EL +L
Sbjct: 500 TLVTDRTWLASYHLKGAAQTWYYALEQDEGMPTWGRFKEVCTLRFGPPVRGTRLSELARL 559
Query: 143 QQTSTVAEYQTRFEKVSNQVVGLSPEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAK 202
TSTV +Y RF + L + + F+ GL I+ ++AI P + A+ +A+
Sbjct: 560 PFTSTVQDYADRFNAMLGHTRKLDAQQKAELFVGGLPDHIRADVAIRDPQDLQSAMYLAR 619
Query: 203 QIEAKIK-ESRSSQQRVFRPNQSHFTSPSTAIVPSQPRPLASSSQA---PKPVASSSLPI 258
E + ++ R FR ++ +P+ PRPL + A P A+ + P
Sbjct: 620 AFEQRAAAQTTPPPARGFRQSRPG--------LPAPPRPLTAPPTAAAQPAGTAAPARPF 671
Query: 259 KRLNSAQMQERRALGLCFNCDEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTVED 318
+RL A+ QERR GLCFNCDE Y GH C PRLF L D + + + + L +E
Sbjct: 672 RRLTPAEQQERRRQGLCFNCDEPYVRGHVC-PRLFYLENDDYIDDEPQEEGADLQIALEQ 730
Query: 319 VTVPVHEEAMHFQLSDQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFL 378
P A+ +S AL G +P + +NGH +V LVD+GS+ NF+ +S L
Sbjct: 731 EP-PSRAAAIIPTVSLHALAGVRTPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMSRL 789
Query: 379 HLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLK 438
L TP PT V V NG +IPC G +++ F I + L D +LG ++L+
Sbjct: 790 QLPSTPHPTIKVQVANGDNIPCQGMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEFLR 849
Query: 439 TLGKVISDFSIPSMSFVVNGKTCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLP 498
LG ++ D SMSF G+ G L
Sbjct: 850 LLGPILWDCDRLSMSFTKGGRHIIWSG-------------------------------LG 878
Query: 499 SPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNT 558
+P + P PQ STP P L +LL+ + VF+ P GLPP R +DH I+LLP
Sbjct: 879 APGAVP-PQPAACVVSSTPT---QPLLDDLLRQFELVFAEPQGLPPARPYDHRIHLLPGA 934
Query: 559 PPVNVRPYRYPHSQKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRS 618
PV VRPYRYP QK+ + + ML +GI+ PSTSP+S+PVLL++K D +WRFC+D+R+
Sbjct: 935 APVAVRPYRYPQLQKDELERQCSAMLAQGIIRPSTSPFSAPVLLVRKPDNSWRFCIDYRA 994
Query: 619 LNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYE 678
LN+ T KD+FPIP +DELLDEL GA F+KLDLRSG+HQ+R+ D KTAFRT +GHYE
Sbjct: 995 LNAKTSKDKFPIPVVDELLDELHGAHFFTKLDLRSGYHQVRMHPADVEKTAFRTHEGHYE 1054
Query: 679 FLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLL 738
FLVMPFGL+NAP+TFQA MND+LRP+LR++VLVFFDDIL+YS + + H+ H+ VL L
Sbjct: 1055 FLVMPFGLSNAPATFQALMNDVLRPYLRKYVLVFFDDILIYSKTWAEHLQHISIVLHALR 1114
Query: 739 SHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTG 798
H+ + K SKC FG SV+YLGH+ISA GV D +KV+A+ WP P + LRGFLGL G
Sbjct: 1115 DHQLHLKRSKCSFGARSVAYLGHVISAAGVAMDAAKVEAVSSWPAPHSARGLRGFLGLAG 1174
Query: 799 FYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFS 858
+YR+FI+++ A+ LT LL++D W +FQ LK + + PVL +P+F
Sbjct: 1175 YYRKFIRDFGVIAAPLTRLLRRD------AFTWDDDTQAAFQQLKTALTTGPVLQMPNFE 1228
Query: 859 ATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYL 918
TF ++ DASGT GAVL Q P++FFS+ + + Y RE+ + +AV+ WR YL
Sbjct: 1229 KTFVVDCDASGTGFGAVLHQGAGPVAFFSRPFVTRHLKLAAYERELIGLVQAVRHWRPYL 1288
Query: 919 IGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHS 978
G F + TD SLK+L+ Q T Q +W +KL GFD+E+ Y+PG N ADALSR +
Sbjct: 1289 WGRHFAVRTDHYSLKYLLDQRLSTVPQHQWLSKLFGFDFEVEYRPGRLNVAADALSRRDA 1348
Query: 979 SELPLLA---------AISSPVPEIITQLKQYYKT-PEGIQL---IVDKSTLPHFRVHHE 1025
L A A+S P + +++ T P+ +L + D + +R+
Sbjct: 1349 ELLQPSAGELGAAAALALSGPSFAFLDDIRRATATSPDSSRLCQQLQDGTLTAPWRLEDG 1408
Query: 1026 VLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIK 1085
+L ++VP H R + H +AGH G++ TL RL A F PG +T +++
Sbjct: 1409 LLLHGSRIYVPNHGDLRHQAILLAH---SAGHEGIQKTLHRLRAEFYVPGDRTLVADWVR 1465
Query: 1086 QCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYA 1145
C CQ NK + +GLLQPL P+Q+W DISMDFI GLP G +V +VDR SKYA
Sbjct: 1466 TCTTCQRNKTETLQPAGLLQPLQVPSQVWADISMDFIEGLPKVGGKSVILTVVDRFSKYA 1525
Query: 1146 HFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFST 1205
HF+ L +TA S+A F I RLHG P SIVSDRD +F H WRDLF+ G LR ST
Sbjct: 1526 HFIPLGHPYTAASVARAFFDGIVRLHGFPSSIVSDRDPVFTGHVWRDLFKCAGVSLRMST 1585
Query: 1206 AYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVY 1265
A+HP+TDGQ+EVVN+ + YLRC G++PR+W +L AE YNTSFH+A TPF+ VY
Sbjct: 1586 AFHPQTDGQSEVVNKVIAMYLRCVTGDRPRAWVDWLSWAEYCYNTSFHTALRATPFEVVY 1645
Query: 1266 GRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEE 1325
GRPPP +L Y GS+ + +E L+ R IL ++ L +AQ K D R++ +
Sbjct: 1646 GRPPPPILPYQAGSARTAAAEELLRDRDNILAEVRQRLVQAQQLSKRYYDAGHRDMELAD 1705
Query: 1326 NAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVS 1385
WV LRL +SL R KL R+ GPFRV RIG VAY L+LP ++LH+VFHV
Sbjct: 1706 GDWVWLRLLHRPVQSLEPRAKGKLGPRYAGPFRVLERIGKVAYRLELPEGARLHDVFHVG 1765
Query: 1386 LL 1387
LL
Sbjct: 1766 LL 1767
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 981 bits (2535), Expect = 0.0
Identities = 568/1395 (40%), Positives = 803/1395 (56%), Gaps = 102/1395 (7%)
Query: 28 TFPAGFVSPPLGFNSPPQTNPQT-----------------LPKSLKLQLTSFDGS-KPLE 69
T P+G VS N+PPQ + LP++ KL+ ++DG PL
Sbjct: 65 TNPSGLVSRQPRDNTPPQDDADARSRRDQHGDDTAIDNSFLPRA-KLEFPTYDGKGDPLP 123
Query: 70 WLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLSFWEAFTRALAIRFGP 129
WL E F + +TP +++ S ++ GDA WY + N W F + + RFGP
Sbjct: 124 WLNRCETF-RGQKTPETRKVWYASLHLIGDAQLWYYRIELNSGEPSWRRFVQLVHTRFGP 182
Query: 130 SAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLDCFISGLVPEIKRELAIL 189
++ EL L++T TV Y F ++ + V LS + F +GLV +K ++A+
Sbjct: 183 PMTDSPLGELTALRRTGTVENYVNSFLALACRDVELSESQQVQLFTAGLVNPLKTDVALC 242
Query: 190 KPYSVSQAIGIAKQIEAKIK-----ESRSSQQRVFRPNQSHFTSPSTAIVPSQPRPLASS 244
+P S+ AI +A+ E + S RV RP+ +S ++A + +A+S
Sbjct: 243 RPRSLDDAIMLARAYEQRATLGPTDPSAPRTGRVPRPSLPA-SSAASASASTTSADVAAS 301
Query: 245 SQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQPRLFLLMLA------ 298
+ A K S+LP KRL+ A+M +RR+ GLC+NCDEKY GH+C+ + +++
Sbjct: 302 TAAGKQPLVSALPRKRLSPAEMAQRRSEGLCYNCDEKYVAGHRCKKSFVIEVISFPEDTG 361
Query: 299 DEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPR--TLKFTAIVNGHP 356
DE T EA + T+++ ++ +H AL G +P+ T+K A +
Sbjct: 362 DEEDSTPEAH----AITLDEPSIFLH-----------ALAGISAPKFNTIKVWARLGSQE 406
Query: 357 VVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTFAGNTF 416
+V L+D+GS++NF+ + + P V V NG +P G P V+ + F
Sbjct: 407 LVALLDSGSTHNFINDAIAHQASVPLQRRPGLSVAVANGDRVPSPGRCPPQRVSIGSHEF 466
Query: 417 HIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLPPPSHASF 476
I FY + L G D VLG WL TLG + DFS S++F P+H
Sbjct: 467 DIDFYALPLGGYDIVLGAQWLGTLGPTLWDFSRQSLAF---------------GPAH--- 508
Query: 477 NHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVF 536
R+ T S + P+P + P D + +LL +F
Sbjct: 509 ---DRVTWT-------------SIDAAPAPALAAA--IDGQPGDL---MTDLLDVLKDLF 547
Query: 537 STPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIVVPSTSPY 596
+ PHGLPP R H I L V VRPYRY H QK+ + DML+ G++ PS+S +
Sbjct: 548 TEPHGLPPERHLCHRIRLEAGVSAVAVRPYRYAHIQKDELERQCDDMLRHGVIRPSSSAF 607
Query: 597 SSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFH 656
SSP LLIKK DG+WRFCVD+R+LN TIKD+FPIP +EL DEL GA F+KLD+RSG+H
Sbjct: 608 SSPALLIKKCDGSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRGAKFFTKLDMRSGYH 667
Query: 657 QIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDI 716
Q+ + +D HKTAFRT G +EFLVMPFGLTNAP+TFQA MND+L PFLRRFVLVFFDDI
Sbjct: 668 QVLMHPDDVHKTAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLLPFLRRFVLVFFDDI 727
Query: 717 LVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQ 776
L+YS S S H+ H++ VL+ L H + K SKC FG+TSV+YLGH+IS +GV D SKVQ
Sbjct: 728 LIYSSSWSEHLRHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHVISGDGVAMDRSKVQ 787
Query: 777 AIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAA 836
A++DWPVP+ + A+RGFLGL G+YRRFI+++ A A+ LT LL+++ WS AA
Sbjct: 788 AVLDWPVPKTVRAVRGFLGLAGYYRRFIRDFGAIAAPLTALLRKEG------FRWSDEAA 841
Query: 837 DSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQH 896
+F+ L+ + +APVL LPDF+ F +E DASGT +GAVL Q G P++FFS + +
Sbjct: 842 AAFRKLQHALTAAPVLQLPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPRHAK 901
Query: 897 QSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFD 956
+ Y RE+ + +AV+ WR YL G +F I TD SL+ L+ Q T Q WA+KLLGFD
Sbjct: 902 LAAYERELIGLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLLGFD 961
Query: 957 YEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQL-KQYYKTPEGIQL---IV 1012
+ + YKPG+ N VADALSR L +S+P ++ + ++ TP L I+
Sbjct: 962 FAVEYKPGTANVVADALSR-RDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDDII 1020
Query: 1013 DKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFN 1072
+ P + ++ KD +F+PE ++L H GH G + T+ RL A F+
Sbjct: 1021 RGAKPPPWAFKDGLIVLKDRVFIPESSPLLPAVLELAHGH---GHEGTQKTMFRLRADFH 1077
Query: 1073 WPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHT 1132
P + + F++ CL CQ NK + +GLLQ LP P+ +W DI+MDF+ GLP HG T
Sbjct: 1078 VPRDRVLVQDFVRACLTCQRNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVHGKT 1137
Query: 1133 VAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRD 1192
V +VDR SK+AHF+ L +TAT++A F +I RLHG+P SIVSDRD +F S FW +
Sbjct: 1138 VILTVVDRFSKFAHFIPLSHPYTATTVAAAFFGDIVRLHGVPSSIVSDRDPVFTSKFWTE 1197
Query: 1193 LFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSF 1252
LFR+ G +L ++A+HP++DGQ+EV N+ + YLRC G++PR W ++L AE YNTS+
Sbjct: 1198 LFRLAGVQLNLTSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRQWLRWLPWAEYCYNTSY 1257
Query: 1253 HSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKI 1312
++ TPF VYGR PPSL +Y PGS+ + ++ S+Q R L +++ L++AQ K
Sbjct: 1258 QASLRTTPFHVVYGRSPPSLRSYEPGSTCLPAVQRSMQDRDQFLVAIRDRLEQAQQVYKQ 1317
Query: 1313 QKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDL 1372
DK RE+ F+ WV LRL SL R KL +FYGP+++ IGSVAY L L
Sbjct: 1318 AYDKKHRELNFDVGDWVWLRLLHRPMASLDTRGRGKLGPKFYGPYQIVACIGSVAYRLRL 1377
Query: 1373 PPTSKLHNVFHVSLL 1387
PP ++LH+VFHV LL
Sbjct: 1378 PPGARLHDVFHVGLL 1392
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 979 bits (2532), Expect = 0.0
Identities = 559/1351 (41%), Positives = 769/1351 (56%), Gaps = 67/1351 (4%)
Query: 48 PQTLPKSLKLQLTSFDG-SKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRW 106
P PK + + +DG + PL ++ E FF PA+R + S+ +Q A WY
Sbjct: 59 PDRPPKHWRPEFPKYDGKTDPLAFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMH 118
Query: 107 MHNNYQLSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLS 166
+ +N WE F L +R+GP EL ++TSTV +YQ RF+ + + L
Sbjct: 119 VQDNEGTPTWERFKELLNLRYGPPLRSVPLFELSACRRTSTVEDYQDRFQALLPRAGRLE 178
Query: 167 PEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHF 226
+ F GL+P + ++ KP S+ +A+ +A+Q E + P
Sbjct: 179 EAQQVQLFTGGLLPPLSLQVQQQKPASLEEAMSLARQFE------------LMEPYLFPA 226
Query: 227 TSPSTAIVPSQ-PRPLASSSQAPKP--VASSSLPIKRLNSAQMQERRALGLCFNCDEKYT 283
T+ + ++P+ PRP P P V P+KRL+ AQ +ERR LGLC+NCDEKY+
Sbjct: 227 TTSARGVLPTPAPRPSTGPVVKPAPATVTVEGRPVKRLSQAQQEERRRLGLCYNCDEKYS 286
Query: 284 IGH-KCQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPS 342
H K RLF + + AI DTVED T EA F L A+ G P
Sbjct: 287 RSHNKVCKRLFFV---------EGGAIEEGDDTVEDDTEEATVEAPVFSL--HAVAGIPL 335
Query: 343 PRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAG 402
+ + + +V LVDTGS++NF+ L V P P V NG + C G
Sbjct: 336 GKPILLQVTLGAASLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPG 395
Query: 403 YIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVIS-DFSIPSMSFVVNGKTC 461
+ +T G F + YVM L G D VLG W+ LG I+ D + ++SF G+T
Sbjct: 396 VLRRAPITIQGMAFDVDLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVSFQHQGRTV 455
Query: 462 TLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDF 521
+ + LPP A + T T L + + S STP P
Sbjct: 456 SWQS--LPPHQRAD------------VHAVSTGTSLVAATGSSS---------STPAPTT 492
Query: 522 DPALWE-LLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATIL 580
+PAL + LL S+ VF+ P GLPP R DH I+LLP PPV VRPYRYP + K+ +
Sbjct: 493 EPALLDGLLGSFDDVFAEPRGLPPPRGRDHAIHLLPGAPPVAVRPYRYPVAHKDELERQC 552
Query: 581 TDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDEL 640
M+++G++ STS +SSPVLL+KK DG+WRFCVD+R+LN+ITIKD +PIP +DELLDEL
Sbjct: 553 AVMMEQGLIRRSTSAFSSPVLLVKKADGSWRFCVDYRALNAITIKDAYPIPVVDELLDEL 612
Query: 641 GGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDL 700
GA F+KLDLRSG+HQ+R+ ED KTAFRT DG YEFLVMPFGL NAP+TFQA MND+
Sbjct: 613 HGAKFFTKLDLRSGYHQVRMRAEDVAKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDI 672
Query: 701 LRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLG 760
LR +LRRFVLVFFDDIL+YS + + H+ H++ VL +L H+ + K SKC FGV+S+SYLG
Sbjct: 673 LRIYLRRFVLVFFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSKCAFGVSSISYLG 732
Query: 761 HIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQ 820
HII A GV DP+KVQA+VDWP PR+ +RGFLGL G+YR+F+ +Y A+ LT L K+
Sbjct: 733 HIIGATGVSMDPAKVQAVVDWPQPRSARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKK 792
Query: 821 DQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKG 880
+ WS A +F LK + +APVL LPDF F +E DAS GAVL Q
Sbjct: 793 EG------FRWSDEVATAFHALKHAVTTAPVLALPDFVKPFVVECDASTHGFGAVLLQDK 846
Query: 881 HPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTF 940
HP++FFS+ + + + + Y RE+ + A++ WR YL G F + TD SLK+L+ Q
Sbjct: 847 HPLAFFSRPVAPRHRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLLDQRL 906
Query: 941 QTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQ 1000
T Q W KLLGFD+ + YK G+ N VADALSR + E +L A+S+P + I +L+
Sbjct: 907 ATIPQHHWVGKLLGFDFTVEYKSGASNVVADALSRRDTDEGAVL-ALSAPRFDYIERLRA 965
Query: 1001 YYKTPEGIQLIVDK----STLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAG 1056
T + I D + + + ++ F L++P IL+ H G
Sbjct: 966 AQTTEPALVAIRDAIQAGTRSAPWALRDGMVMFDSRLYIPPSSPLLHEILAAIHTD---G 1022
Query: 1057 HSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWED 1116
H G++ TL RL F+ P ++ + F++ C CQ NK GLL PLP P +W D
Sbjct: 1023 HEGVQRTLHRLRRDFHSPAMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPTTVWAD 1082
Query: 1117 ISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRS 1176
I +DF+ LP G TV +VDR SKY HF+ L +TA S+A F ++I RLHGIP+S
Sbjct: 1083 IGLDFVEALPRVGGKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRLHGIPQS 1142
Query: 1177 IVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRS 1236
+VSDRD +F S FWR+L R+ GTK+ +TA HP++DGQTE N+ + YLRCF G++PR
Sbjct: 1143 MVSDRDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQ 1202
Query: 1237 WYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*IL 1296
W ++L AE YNT++ ++ TPF+ VYGR PP + +Y PG + + ++ S+ R L
Sbjct: 1203 WVRWLPWAEYIYNTAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFL 1262
Query: 1297 ESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGP 1356
++ L++AQ K DK R V++E VLLRL+ SL KL R++GP
Sbjct: 1263 ADVRYRLEQAQATHKKYYDKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYFGP 1322
Query: 1357 FRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
+RV I VA L+LPP +KLH+VFHV LL
Sbjct: 1323 YRVVEVINPVAVRLELPPRAKLHDVFHVGLL 1353
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 974 bits (2517), Expect = 0.0
Identities = 542/1347 (40%), Positives = 783/1347 (57%), Gaps = 46/1347 (3%)
Query: 56 KLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYR-WMHNNYQLS 114
K+ FDG++ EWLF E+FF + TP ++++ + + A +W++ ++ + L
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 115 F---WEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVL 171
W+ + + L RF ++ EL LQ+T + +Y +FE + +V LS E ++
Sbjct: 171 VLYDWKGYVKLLKERFEDDC-DDPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLV 228
Query: 172 DCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPST 231
+++GL + + + + +P +V + + K E + + N+S +P+
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEKA--HPKKPANTTWSTNRS---APTG 283
Query: 232 AIVPSQPRPLASSSQAP-----KPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGH 286
Q + + KPV+ K+++ +M +RR+ GLC+ CDEKYT H
Sbjct: 284 GYNKYQKEGESKTDHYGNKGNFKPVSQQP---KKMSQQEMSDRRSKGLCYFCDEKYTPEH 340
Query: 287 KCQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTL 346
+ L D +E ++A L++D +D +P Q+S A+ G +T+
Sbjct: 341 YLVHKKTQLFRMDVDEEFEDAREELVND--DDEHMP--------QISVNAVSGIAGYKTM 390
Query: 347 KFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPD 406
+ + + +L+D+GS++NF+ P T + L KV V V +G + G + D
Sbjct: 391 RVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTD 450
Query: 407 IEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGE 466
TF ++ LQG D VLG+ WL+TLG++ +F M F N + L G
Sbjct: 451 FSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGL 510
Query: 467 PLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALW 526
Q+L + S + L N T + +
Sbjct: 511 TSGSVREVKAQKLQKLQED----QVQLAMLCVQEVSESTEGELCTINALTSELGEESVVE 566
Query: 527 ELLQSYAPVFSTPHGLPPTRF-HDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQ 585
E+L Y +F P LPP R H+H I LL + PVN RPYRY QK + ++ D+L
Sbjct: 567 EVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLT 626
Query: 586 EGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASH 645
G V S+SPY+SPV+L+KKKDGTWR CVD+R LN +T+KD FPIP I++L+DELGGA
Sbjct: 627 NGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVI 686
Query: 646 FSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFL 705
FSK+DLR+G+HQ+R+ +D KTAF+T GH+E+LVMPFGLTNAP+TFQ MN + +PFL
Sbjct: 687 FSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFL 746
Query: 706 RRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISA 765
R+FVLVFFDDILVYS SL H HLK+V EV+ ++K +AKLSKC F V V YLGH ISA
Sbjct: 747 RKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISA 806
Query: 766 NGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDK 825
G+ DP+K++A+ +WP P L LRGFLGL G+YRRF++++ A L L K D +
Sbjct: 807 QGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFE- 865
Query: 826 HTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISF 885
W++ A +F+ LK + APVL LP F F +ETDA G +GAVL Q+GHP+++
Sbjct: 866 -----WTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAY 920
Query: 886 FSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQ 945
S++L + H S Y +E+ AV AV+KWR YL+ F I TDQ+SLK+L+ Q TP Q
Sbjct: 921 ISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQ 980
Query: 946 IKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTP 1005
+W KLL FDYEI Y+ G EN VADALSR SE+ L A++ +++ ++ Y
Sbjct: 981 QQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEV-LHMAMTVVECDLLKDIQAGYAND 1039
Query: 1006 EGIQLIV-----DKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGL 1060
+Q I+ D + +F +L K + VP +D + +IL H S GHSG
Sbjct: 1040 SQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGR 1099
Query: 1061 KPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMD 1120
T R+ F W G+ + + +I+ C CQ K PA GLLQPLP P IW ++SMD
Sbjct: 1100 DVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMD 1159
Query: 1121 FITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSD 1180
FI GLP S G TV V+VDRLSK AHF+AL ++A ++A+ + + +LHG P SIVSD
Sbjct: 1160 FIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSD 1219
Query: 1181 RDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKF 1240
RD +F S FWR+ F + G L+ ++AYHP++DGQTEVVNR LETYLRC ++P+ W K+
Sbjct: 1220 RDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKW 1279
Query: 1241 LHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLK 1300
L LAE WYNT++HS++ MTPF+ VYG+ PP L Y+PG S + + SLQ+R +L LK
Sbjct: 1280 LALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLK 1339
Query: 1301 ANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVK 1360
+L RAQHRMK D+ R E FE +V ++LQPYRQ+S+ R + KL+ +++GP+++
Sbjct: 1340 FHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKII 1399
Query: 1361 RRIGSVAYELDLPPTSKLHNVFHVSLL 1387
R G VAY+L LP S++H VFHVS L
Sbjct: 1400 DRCGEVAYKLALPSYSQVHPVFHVSQL 1426
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 962 bits (2487), Expect = 0.0
Identities = 537/1358 (39%), Positives = 770/1358 (56%), Gaps = 81/1358 (5%)
Query: 39 GFNSPPQTNPQTLPKSLKLQLTSFDG-SKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQ 97
GF P P PK + +DG S PL ++ E FF + +++ + S +
Sbjct: 54 GFGDQPPDRP---PKHWRPDFPHYDGKSDPLIFINRCESFFLQQRIMQEEKVWMASHNLL 110
Query: 98 GDALSWYRWMHNNYQ-LSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFE 156
A WY + + + W F L +R+GP EL ++T TV +YQ RF+
Sbjct: 111 EGAQLWYMQVQEDERGTPTWTRFKELLNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQ 170
Query: 157 KVSNQVVGLSPEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQ 216
+ + L E + F GL+P + ++ + P S++ A+ +A+Q E I++ +
Sbjct: 171 ALLPRAGRLDEEQRVQLFTGGLLPPLSLQVQMQNPQSLAAAMSLARQFEL-IEQYTAVPA 229
Query: 217 RVFRPNQSHFTSPSTAIVPSQPRPLASSSQAPKPV-ASSSLPIKRLNSAQMQERRALGLC 275
+ P + +P+ + P P ++ AP A+ + P++RLN A+ +ERR LGLC
Sbjct: 230 KA--PGRGVLPAPAPRPQLALPAPAGAAKPAPPAATAADNRPVRRLNQAEQEERRRLGLC 287
Query: 276 FNCDEKYTIGHK--CQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLS 333
FNCDEKY+ GH C+ F+ + DE +E E + D PV S
Sbjct: 288 FNCDEKYSRGHNKVCKRLFFVDSVEDEDEEAPEDEV--------DAEAPV--------FS 331
Query: 334 DQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVG 393
A+ G + + +V LVDTGS++NF+ + L V P P V
Sbjct: 332 LHAVAGVAVGHPILLRVQLGATTLVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATVA 391
Query: 394 NGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMS 453
NG + C G + +T G FH+ YVM L G D VLG W+ LG++ D + +++
Sbjct: 392 NGEKVACPGVLRHAPITIEGMPFHVDLYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRALT 451
Query: 454 FVVNGKTCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLEN 513
F + G+T +G P P+ + + +
Sbjct: 452 FDLEGRTICWQGAP--------------------------------NQDGPAVRAASAD- 478
Query: 514 LSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQK 573
D L LL S+A VF+ P GLPP R DH I L T PV VRPYRYP + K
Sbjct: 479 --------DSLLGGLLDSFADVFTEPTGLPPQRGRDHAIVLKQGTSPVAVRPYRYPAAHK 530
Query: 574 EAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTI 633
+ + M+ +GIV S S +SSPVLL+KK D +WRFCVD+R+LN++T+KD FPIP +
Sbjct: 531 DELERQCAAMISQGIVRRSDSAFSSPVLLVKKADSSWRFCVDYRALNALTVKDAFPIPVV 590
Query: 634 DELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTF 693
DELLDEL GA FSKLDLRSG+HQ+R+ ED HKTAFRT DG YEFLVMPFGL NAP+TF
Sbjct: 591 DELLDELHGARFFSKLDLRSGYHQVRMRPEDIHKTAFRTHDGLYEFLVMPFGLCNAPATF 650
Query: 694 QAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGV 753
QA MND+LR FLRRFVLVFFDDIL+YS + + H+ HL+ VL VL HK + K SKC FGV
Sbjct: 651 QALMNDVLRSFLRRFVLVFFDDILIYSDTWADHLRHLRAVLTVLREHKLFIKRSKCAFGV 710
Query: 754 TSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASH 813
SV+YLGH+ISA GV DP+KVQAI +WP PR+ A+RGFLGL G+YR+F+ NY A+
Sbjct: 711 DSVAYLGHVISAAGVAMDPAKVQAIREWPQPRSARAVRGFLGLAGYYRKFVHNYGTIAAP 770
Query: 814 LTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVG 873
LT LLK++ W+ AA +F LK + SAP+L +PDF+ F +E DAS G
Sbjct: 771 LTALLKKEG------FAWTEAATAAFDALKAAVSSAPILAMPDFTKAFTVECDASSHGFG 824
Query: 874 AVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLK 933
AVL Q GHP++FFS+ + + + + Y RE+ + AV+ WR YL G F + TD SLK
Sbjct: 825 AVLIQDGHPLAFFSRPVAPRHRALAAYERELIGLVLAVRHWRPYLWGRHFTVKTDHYSLK 884
Query: 934 HLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPE 993
+L+ Q T Q W KLLGFD+ + YKPG+ N VADALSR ++E + +S+P +
Sbjct: 885 YLLDQRLSTIPQHHWVGKLLGFDFTVEYKPGAANTVADALSRRDTTEDASVLVLSAPRFD 944
Query: 994 IITQLKQYYKTPEGIQL----IVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEY 1049
I +L+Q + I + + + ++ F L++P +L
Sbjct: 945 FIERLRQAQDVDPALVALQAEIRSGTRAGPWSMADGMVLFAGRLYLPPASPLLQEVLRAV 1004
Query: 1050 HASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPT 1109
H GH G++ TL RL F++P +++ + F++ C CQ K + +GLL PLP
Sbjct: 1005 HEE---GHEGVQRTLHRLRRDFHFPNMKSVVQDFVRTCEVCQRYKAEHLQPAGLLLPLPV 1061
Query: 1110 PAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICR 1169
P +W D+++DF+ LP G +V +VDR SKY HF+ L ++A S+A F +EI R
Sbjct: 1062 PQGVWTDVALDFVEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQVFFAEIVR 1121
Query: 1170 LHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCF 1229
LHG+P+S+VSDRD +F S FW +L R+ GTKL +TA+HP++DGQ+E NR + YLRC
Sbjct: 1122 LHGVPQSMVSDRDPVFTSAFWSELMRLVGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCL 1181
Query: 1230 AGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESL 1289
G++PR W ++L AE +NT++ ++ TPF+ VYGR PPS+ +Y PG + + ++ +S+
Sbjct: 1182 TGDRPRQWLRWLPWAEFVFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKSM 1241
Query: 1290 QQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKL 1349
++R+ LE ++ L++AQ K DKS R V+F+ WVLLRL+ SL+ +S KL
Sbjct: 1242 EERSEFLEDIRYRLEQAQAIQKKYYDKSHRAVSFQVGDWVLLRLRQRAPASLSLAVSGKL 1301
Query: 1350 AKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
R++GP+R+ I VA L LP ++LH+VFH+ LL
Sbjct: 1302 KPRYFGPYRIAEMINEVAARLALPAGARLHDVFHIGLL 1339
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 939 bits (2428), Expect = 0.0
Identities = 521/1334 (39%), Positives = 747/1334 (55%), Gaps = 80/1334 (5%)
Query: 62 FDGSK-PLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLSFWEAFT 120
+DG+ PL ++ E +F + +++ + S+ ++ A WY + + W F
Sbjct: 6 YDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPRWNRFK 65
Query: 121 RALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLDCFISGLVP 180
L +RFGP EL + ++T TV EYQ F+ + + L ++ F GL+P
Sbjct: 66 DLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQLVQLFTGGLLP 125
Query: 181 EIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPSTAIVPSQPRP 240
+ + I P S++ A+ +A+Q+E + +P ++P+ P+
Sbjct: 126 PLSHAVRIHNPQSLAAAMSLARQVEL---------MELDKPAPVPARPAPRGLLPALPQR 176
Query: 241 LA-SSSQAPKPVAS-SSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQPRLFLLMLA 298
LA + A PVA + P+KRL+ + ERR LGLC+NCDEKY+ GH R +
Sbjct: 177 LALPAPPASAPVAKMEAKPVKRLSQEEQAERRRLGLCYNCDEKYSRGHNRVCRRIFYIDG 236
Query: 299 DEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTLKFTAIVNGHPVV 358
+ + ++AA+ D +D PV S QA+ G P T++ ++ +
Sbjct: 237 VTLTDAEDAAL----DADQDGEAPV--------FSLQAVAGVPICDTMQVRVMLGAVTLT 284
Query: 359 VLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTFAGNTFHI 418
L+DT S++NF+ +L + P P V NG I C G + +T G FH+
Sbjct: 285 ALLDTSSTHNFIAEEAARRTNLAIQPKPRLTATVANGEKIQCPGVLRQAPITIDGEEFHV 344
Query: 419 PFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLPPPSHASFNH 478
+VM L G D VLG W+ TLG + DF+ +MSF H
Sbjct: 345 DLFVMPLAGYDLVLGTQWMVTLGPITWDFTARTMSFS---------------------RH 383
Query: 479 FQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFST 538
+ +D A P P + L LL S+ VF+
Sbjct: 384 GMEVRWSDVAAR-------------PEPTVAVIAASEV-------LLDGLLASFEGVFAE 423
Query: 539 PHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIVVPSTSPYSS 598
P GLPP R DH I L P PV VRPYRY + K+ + ++++GIV S S +SS
Sbjct: 424 PSGLPPQRARDHSIVLKPGALPVAVRPYRYLAAHKDELELQCAAIIEQGIVRRSDSAFSS 483
Query: 599 PVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQI 658
PVLL+KK DG+WRFCVD+R+LN++T+KD FPIP IDELLDEL GA F+KLDLRSG+HQ+
Sbjct: 484 PVLLVKKPDGSWRFCVDYRALNALTVKDAFPIPVIDELLDELHGARFFTKLDLRSGYHQV 543
Query: 659 RLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILV 718
R+ D HKTAF T DG YEFLVMPFGL NAP TFQA MND+LRPFLRRFVLVFFDDIL+
Sbjct: 544 RMRPADVHKTAFHTHDGLYEFLVMPFGLCNAPVTFQALMNDVLRPFLRRFVLVFFDDILI 603
Query: 719 YSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAI 778
YS + + H+ H++ VL L H+ + K +KC F SV+YLGH+IS GV DP+KVQA+
Sbjct: 604 YSKTWADHLRHIRAVLSELQRHQLFLKRAKCAFASASVAYLGHVISEAGVAMDPAKVQAV 663
Query: 779 VDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADS 838
DWP PR+ A+R FLGL G+YR+F+ NY A A+ LT LLK+D WS AA +
Sbjct: 664 RDWPAPRSARAVRSFLGLAGYYRKFVHNYGAIAAPLTALLKKDS------FSWSGEAATA 717
Query: 839 FQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQS 898
F LK + +APVL +PDFS F +E DAS GAVL Q HP++FFS+ + + + +
Sbjct: 718 FDALKAAVTTAPVLAMPDFSKPFIVECDASSHGFGAVLVQDSHPVAFFSRPVAPRHRALA 777
Query: 899 TYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYE 958
Y RE+ AV+ WR YL G +F + TD SLK+L+ Q T Q W KLLGFD+
Sbjct: 778 AYERELIGFVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQHHWVGKLLGFDFT 837
Query: 959 IFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTPEGI-----QLIVD 1013
+ YKPG N VADALSR + E + A+S+P + + +L+ T + +L
Sbjct: 838 VEYKPGHANAVADALSRRDTPEDGTILALSAPRFDFVDRLRHAQTTDPALVAMHEELTSG 897
Query: 1014 KSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNW 1073
LP V + Y L++P +++ H GH G++ TL RL F++
Sbjct: 898 SQALPWAAVDGMIQY-SGRLYIPPASPLLPELMAAVHEE---GHEGVQRTLHRLRRDFHF 953
Query: 1074 PGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTV 1133
P ++ + ++ C CQ K +GLL PLP P +W DI++DF+ LP G +V
Sbjct: 954 PNMKQLVQDLVRACPTCQRYKSEHLHPAGLLLPLPVPQGVWTDIALDFVEALPRVRGKSV 1013
Query: 1134 AWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDL 1193
+VDR SKY HF+ L ++A ++A F ++I RLHG+P+SIVSDRD +F SHFWR+L
Sbjct: 1014 ILTVVDRFSKYCHFIPLSHPYSAETVAQAFFADIVRLHGMPQSIVSDRDTVFTSHFWREL 1073
Query: 1194 FRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFH 1253
+ GTKL +TA+HP++DGQ+E NR + YLRC G++PR W ++L AE +NT++
Sbjct: 1074 MWLVGTKLHMTTAFHPQSDGQSESANRVIVMYLRCLTGDRPRQWLQWLPWAEYVFNTAYQ 1133
Query: 1254 SAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQ 1313
++ TPF+ VYGR PPS+ +Y PG + + ++ +++++R L +++ L++AQ K
Sbjct: 1134 TSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKTMEERDKFLADIRSRLEQAQATQKRH 1193
Query: 1314 KDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLP 1373
DK+ R VT++ W LLRL+ SL ++ KL RFYGP+R+ I VA L LP
Sbjct: 1194 YDKAHRHVTYQVGDWALLRLRQRAASSLPQTVAGKLRPRFYGPYRITELINDVAVRLALP 1253
Query: 1374 PTSKLHNVFHVSLL 1387
P ++LH+VFH+ LL
Sbjct: 1254 PRARLHDVFHIGLL 1267
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 937 bits (2421), Expect = 0.0
Identities = 548/1386 (39%), Positives = 765/1386 (54%), Gaps = 78/1386 (5%)
Query: 23 PPTNNTFPAGFVSPPLGFNSPPQTNPQTLPKSLKLQLTSFDGSKPLEWLFHAEQFFQLHQ 82
PP P PP+ NS Q +PK + FDG+ W+ + E +F L+Q
Sbjct: 100 PPPEVEVPVRSGQPPVRDNSDVQGRRSWVPK---MDFPKFDGTDVCVWVDNCETYFALYQ 156
Query: 83 TPPAQRLELVSFYMQGDALSWYRWMHNNYQLSFWEAFTRALAIRFGPSAYENHQQELFKL 142
++ S M GDA WY+ WE A+ F + +EL L
Sbjct: 157 ITEGFKVSAASLNMIGDAAHWYQAWKQERGWPTWEQLREAVLNEFEINIKRAKMEELLLL 216
Query: 143 QQTSTVAEYQTRFEKVSNQVVGLSPEA----VLDCFISGLVPEIKRELAILKPYSVSQAI 198
QT TV+EY+++F ++ + P ++ F+ GL E++ +A +P +V QA
Sbjct: 217 TQTGTVSEYRSKFLQLVYHIRLYDPATSGLFLVSRFVMGLKDELRCFVAAQEPETVHQAA 276
Query: 199 GIAKQIEAKIKESRSSQQRVFRPNQSHFTSPSTAIVPSQPRPLASSSQAPKPVASSSLPI 258
+A E +++ F+ + + K +P+
Sbjct: 277 RVALAFEGAF----CNRKVAFKKDVGNV----------------------KFGDKGKVPV 310
Query: 259 KRLNSAQM--QERRALGLCFNCDEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTV 316
L AQ + RR GLCF C EKY+ H C + EV + + +L+D +
Sbjct: 311 GDLWKAQQLKEYRRTHGLCFKCGEKYSPAHTCGKTEGAQLKTMEVSSSDD----VLTDEI 366
Query: 317 EDVTVPVHE-EAMHFQLSDQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTV 375
DV + + LS QA+ G + +L+ A+ V++LVD+GSS++F+
Sbjct: 367 LDVVTAFEQLPDDNMLLSLQAVAGTSATHSLQLRALAGNQVVIILVDSGSSHSFINADLC 426
Query: 376 SFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLD 435
S L+L PIP V V NG + C + + G TF V+ + G D VLG+D
Sbjct: 427 SKLNLSTDPIPVSTVKVANGETLQCEAQVSEFSWWIQGCTFVSSLKVLSMGGHDIVLGMD 486
Query: 436 WLKTLGKVISDFSIPSMSFVVNGKTCTLEG---EPLPPPSHASFNHFQRLIHTDAIAECH 492
WL + +++ + F GK L+G L S S + + + I
Sbjct: 487 WLSKFSPMTCNWADRWLEFTYQGKLVKLQGIQSHQLQYLSEVSSDQMMKWQVGNDIWALA 546
Query: 493 TITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHI 552
+ L SP L + + P ++ ++LQ Y+ VF GLPP R DH I
Sbjct: 547 VVDCLSSP----------LCDSAVPA-----SIQDVLQKYSSVFQPSAGLPPHRELDHSI 591
Query: 553 NLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRF 612
L+P PVN RPYRY +QK+ + + +ML+ G++ S SP++SPVLL+KKKD TWRF
Sbjct: 592 PLVPGAIPVNSRPYRYSPAQKDEIEKQVQEMLESGLISRSCSPFASPVLLVKKKDNTWRF 651
Query: 613 CVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRT 672
CVD+R LN+ITIK++FP+P +DELLDEL G FSKLDLRSG+HQIR+ D KTAF+T
Sbjct: 652 CVDYRRLNAITIKNKFPLPIVDELLDELAGTRFFSKLDLRSGYHQIRMKETDEEKTAFKT 711
Query: 673 VDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKE 732
GH++F VMPFGLTNAP+TFQ MN + P+LR+FVLVF DDILVYSPSL H HL
Sbjct: 712 HHGHFQFRVMPFGLTNAPATFQCLMNSIFEPYLRKFVLVFMDDILVYSPSLETHAIHLDT 771
Query: 733 VLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRG 792
VL+VL H+ AKLSKC F + + YLGHIISA+GV DP K + + DWPVP N+T LRG
Sbjct: 772 VLQVLQQHQLSAKLSKCSFAASQLEYLGHIISADGVATDPEKTRIMRDWPVPTNVTELRG 831
Query: 793 FLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVL 852
FLGLTG+YR+F+KNY A LT LL+++ K W+ +A +F LK + S PVL
Sbjct: 832 FLGLTGYYRKFVKNYGVIAKPLTVLLQKNAK-----FIWTDSANSAFLQLKHAMCSTPVL 886
Query: 853 VLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVK 912
LPDF+ TF +ETDA T +GAVLSQ+GHPI+F+SK L + Q S Y +E A+ A+
Sbjct: 887 ALPDFTKTFVLETDACATGIGAVLSQEGHPIAFYSKALGMANQKLSIYEKEFLAIMMAID 946
Query: 913 KWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADA 972
KWR YL+ F I TD QSL HL Q + Q K TKL+G Y+ YK G +N+ ADA
Sbjct: 947 KWRSYLLRGPFTIKTDHQSLCHLDDQILGSELQRKAMTKLIGLQYKFQYKRGVDNKSADA 1006
Query: 973 LSRCHSSELPLLAAISSPVPEIITQLKQYYKTPEGIQ-----LIVDKSTLPHFRVHHEVL 1027
LSR L A +S P P+ I ++ Y T Q L V F + ++
Sbjct: 1007 LSRVGH----LFATVSGPYPKWIQEVVNSYATDADAQQLLTELAVSSPNDKGFMLSGGLI 1062
Query: 1028 YFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQC 1087
D ++V + ++ +++ +H+SP GHSG+ T RL F W G++ + F++QC
Sbjct: 1063 KKHDKIWVGANSGLQSKLIAVFHSSPIGGHSGIHATYHRLKKLFVWTGMKQAVEEFVQQC 1122
Query: 1088 LPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHF 1147
CQ K+ K GLLQPLP P W+DISMDFI GLP S G V+VDR +KYAHF
Sbjct: 1123 GVCQQAKHEHCKYPGLLQPLPIPEGSWQDISMDFIEGLPLSKGANTILVVVDRFTKYAHF 1182
Query: 1148 VALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAY 1207
++L F+A+ +A F + +L+G+P+SIVSDRD++F S FW+ LF +G L STAY
Sbjct: 1183 LSLKHPFSASQVAELFLDRVAQLYGMPKSIVSDRDRVFTSSFWKTLFARFGIPLNMSTAY 1242
Query: 1208 HPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGR 1267
HP++DGQTE VN+ LE YLRC P W +L LA+ WYNTSFH++ +P +A+YG
Sbjct: 1243 HPQSDGQTERVNQCLEMYLRCAVANTPSKWASWLPLAQFWYNTSFHTSLKCSPHKALYGS 1302
Query: 1268 PP-----PSLLAYVPG-SSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREV 1321
P PSL SS+ + L+ R+ +L+ +L RAQ+ MK D R
Sbjct: 1303 DPSYGLLPSLSVEASDESSSSKDATALLKARSFYSSTLQHHLARAQNHMKQVADSKRTLR 1362
Query: 1322 TFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNV 1381
F+ V L+LQPY Q S+ +R +KLA +++GPF + R+GSVAY+L LPP S++H+V
Sbjct: 1363 VFQVGDSVFLKLQPYAQTSVVNRPCHKLAMKYFGPFPILERVGSVAYKLQLPPASQVHSV 1422
Query: 1382 FHVSLL 1387
FHVS L
Sbjct: 1423 FHVSQL 1428
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 935 bits (2416), Expect = 0.0
Identities = 529/1345 (39%), Positives = 759/1345 (56%), Gaps = 76/1345 (5%)
Query: 52 PKSLKLQLTSFDGSK-PLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNN 110
P+ K +DG+ PL +L E +F+ H+T +R+ + S+++ +WY + +
Sbjct: 55 PRPKKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLED 114
Query: 111 YQLSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAV 170
W F + +RFGP EL + ++T TV EY RF+ + + L
Sbjct: 115 EGTPTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQR 174
Query: 171 LDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPS 230
+ F GL+P + + I P +++ A+ +A+Q+E ++ R + + P + +P+
Sbjct: 175 VQLFTGGLLPPLSHAVRIHHPETLAAAMSLARQVEL-MERDRPAPPPLRAPPRGLLPAPA 233
Query: 231 TAI-VPSQPRPLA-SSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHK- 287
+ +P+ + LA + A P + +RL +M ER GLCFNC+EK+T GH
Sbjct: 234 PRLALPAPAQQLALPAPPAAAPQGRDAANPRRLTPEEMAERCRQGLCFNCNEKFTRGHNR 293
Query: 288 -CQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTL 346
C+ RLF + D V+ A + D PV S A+ G P T+
Sbjct: 294 FCR-RLFFV---DGVEIDDVAIEGDAAAAAGDTEAPV--------FSLHAVAGVPIADTI 341
Query: 347 KFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPD 406
+ V ++ L+D GS+++F+ L + P +V NG + C G I D
Sbjct: 342 QLQVTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANGERVACPGVIRD 401
Query: 407 IEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGE 466
T G+TFH +VM L G D VLG WL TLG ++ DF+ SM+F +G+ +G
Sbjct: 402 AAFTINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPIVWDFTSRSMAFQRDGQRFAWKGV 461
Query: 467 PLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALW 526
ST + TL S D
Sbjct: 462 A----------------------------------STSTTHLRTLAAASGTLLD------ 481
Query: 527 ELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQE 586
ELL +Y VF P GLPP R DH I L P++ PV VRPYRYP + K+ + M+++
Sbjct: 482 ELLVAYEDVFGEPTGLPPPRGRDHAIVLKPSSAPVAVRPYRYPAAHKDELERQCAAMIEQ 541
Query: 587 GIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHF 646
G+V S SP+SSPVLL+KK DG+WRFCVD+R+LN++T+KD FPIP +DEL GA F
Sbjct: 542 GVVRRSDSPFSSPVLLVKKADGSWRFCVDYRALNALTVKDAFPIPVVDEL----HGARFF 597
Query: 647 SKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLR 706
+KLDLRSG+HQ+R+ ED HKTAFRT DG YEFLVMPFGL NAP+TFQA MND+LRPFLR
Sbjct: 598 TKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRPFLR 657
Query: 707 RFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISAN 766
RFVLVFFDDIL+YS + + H+ HL+ VL VL H+ + K SKC FG SVSYLGH+IS
Sbjct: 658 RFVLVFFDDILIYSETWTDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVSYLGHVISEA 717
Query: 767 GVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKH 826
GV DP+KVQAI +W VPR+ A+R FLGL G+YR+F+ NY A+ LT L K+D
Sbjct: 718 GVAMDPAKVQAIHEWLVPRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTALTKKDG---- 773
Query: 827 TLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFF 886
W+ A +F LK + SAPVL +PDF+ F +E DAS GAVL Q GHP++FF
Sbjct: 774 --FSWTEDTAAAFDALKAAVTSAPVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPVAFF 831
Query: 887 SKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQI 946
S+ + L+ + + Y RE+ + AV+ WR YL G +F + TD SLK+L+ Q T Q
Sbjct: 832 SRPVVLRHRALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQH 891
Query: 947 KWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTPE 1006
W KLLGFD+ + YKPG+ N VADALSR + E +LA +S+P + I++L +
Sbjct: 892 HWVGKLLGFDFAVEYKPGAANTVADALSRRDTEEGAILA-LSAPRFDFISKLHDAQRQDP 950
Query: 1007 GIQLIVDK----STLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKP 1062
+ + D+ + + + ++L + L++P I+ H GH G+K
Sbjct: 951 ALTALRDEVSAGTRTGPWALVDDLLQYNSWLYIPPASPLAREIIEATHED---GHEGVKR 1007
Query: 1063 TLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFI 1122
T+ RL F+ P ++ + +++ C CQ K +GLL PLP P +W DI++DFI
Sbjct: 1008 TMHRLRREFHIPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVWTDIALDFI 1067
Query: 1123 TGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRD 1182
LP G +V +VDR SKY HF+ L ++A S+A F +EI LHG+P+S+VSDRD
Sbjct: 1068 EALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQSMVSDRD 1127
Query: 1183 KIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLH 1242
IF S FWR+L R+ GTKL +TA+HP++DGQ+E NR + YLRC G++PR W ++L
Sbjct: 1128 PIFTSTFWRELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLP 1187
Query: 1243 LAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKAN 1302
AE +NT++ S+ TPF+ VYGR PPS+ +Y G + + ++ +S+++R L ++
Sbjct: 1188 WAEFIFNTAYQSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFLFDIRYR 1247
Query: 1303 LQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRR 1362
L++AQ K+ DK R V ++ W LLRL+ SL + KL RFYGP+R+
Sbjct: 1248 LEQAQAVQKLHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGPYRITEL 1307
Query: 1363 IGSVAYELDLPPTSKLHNVFHVSLL 1387
I VA L+LP ++LH+VFH+ LL
Sbjct: 1308 INDVAVRLELPAGARLHDVFHIGLL 1332
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 934 bits (2414), Expect = 0.0
Identities = 537/1357 (39%), Positives = 764/1357 (55%), Gaps = 53/1357 (3%)
Query: 56 KLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLSF 115
KL FDG+ P +W E +F ++ T P + + Y G A SW R + +
Sbjct: 178 KLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAASWLRSTKAHVRFPN 237
Query: 116 WEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLDC-- 173
WE F AL+ +F +E +++ ++Q+ TV EY +F+++ N+++ P +
Sbjct: 238 WEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNKLLVYDPVVNMHYLT 297
Query: 174 --FISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPST 231
F GL +I+ + + +P + A+ +A E ++ + + + ++ + S
Sbjct: 298 HRFTEGLYRKIRNVVLLQRPRDLESALAVALLQEEVLETADEVTGKEVKKSEGNSLGRSV 357
Query: 232 AIV------PSQPRP-------LASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNC 278
A + P+ P + S + V SS +RL+S + Q RRA GLC+ C
Sbjct: 358 ANLRGAYPLPTPPMRSGGINMGIKSEEKKESEVRRSSGTNERLSSLKAQ-RRAQGLCYIC 416
Query: 279 DEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTVED---VTVPVHEEAMHFQLSDQ 335
EK++ HKC + L VQE ++L ++VED T V E+ + +S Q
Sbjct: 417 AEKWSPTHKCSNTVQL----HAVQEL----FTVLHESVEDGLSTTDHVVEQTL-MAVSLQ 467
Query: 336 ALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNG 395
A+ G + ++ + G +++LVD+GSS +F+ R S L + VMV G
Sbjct: 468 AVQGTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQPVHVQVMVAGG 527
Query: 396 AHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFV 455
A + C I + E T G+ F V++L D +LG+DWL + D++ S+
Sbjct: 528 AKLHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQHSPMTVDWTTKSLIIA 587
Query: 456 VNGKTCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLS 515
G L G A + Q D A + + F LE
Sbjct: 588 YAGTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLVQFC---------SVFALEYQE 638
Query: 516 TPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEA 575
P L E ++ VF P GLPP R DH I LLP PVNVRPYRY QK
Sbjct: 639 QIPEVVQTVLTE----FSSVFDEPKGLPPIRQFDHTIPLLPGAGPVNVRPYRYTPIQKNE 694
Query: 576 MATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDE 635
+ + + +ML +GI+ PS+SP+SSPVLL+KKKDG+WRFCVD+R LN+IT+K+++P+P IDE
Sbjct: 695 IESQVQEMLSKGIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRHLNAITVKNKYPLPVIDE 754
Query: 636 LLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQA 695
LLDEL GA FSKLDLRSG+HQIR+ +D HKTAF+T GH+EF V+PFGLT+AP+TFQ
Sbjct: 755 LLDELAGAQWFSKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFEFRVLPFGLTSAPATFQG 814
Query: 696 AMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTS 755
MN +L LRR VLVF DDIL+YS SL H+ HLK V ++LL H+ K +KC F
Sbjct: 815 VMNSVLATLLRRCVLVFVDDILIYSKSLEEHVQHLKTVFQILLKHQLKVKRTKCSFAQQE 874
Query: 756 VSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLT 815
++YLGHII NGV DP K+Q I WP P ++ LR FLGL+G+YR+F++NY + LT
Sbjct: 875 LAYLGHIIQPNGVSTDPEKIQVIQHWPAPTSVKELRSFLGLSGYYRKFVRNYGILSKPLT 934
Query: 816 DLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAV 875
+LL++ Q L W++ D+FQ LK +I+A VL +PDF F +ETDAS +GAV
Sbjct: 935 NLLRKGQ-----LYIWTAETEDAFQALKQALITALVLAMPDFQTPFVVETDASDKGIGAV 989
Query: 876 LSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHL 935
L Q HP++F S+ L L+ STY +E A+ AV WR YL +F I TD +SL L
Sbjct: 990 LMQNNHPLAFLSRALGLRHPGLSTYEKESLAIMLAVDHWRPYLQHDEFFIRTDHRSLAFL 1049
Query: 936 MTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEII 995
Q TP Q K TKLLG Y+I +K G +N ADALSR S+ L+A+S VPE I
Sbjct: 1050 TEQRLTTPWQHKALTKLLGLRYKIIFKKGIDNSAADALSRYPGSDRVELSALSVAVPEWI 1109
Query: 996 TQLKQYYKT-PEGIQ----LIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYH 1050
+ Y + P+ L ++ +P+F + + VLYF++ L+V + + IL+ H
Sbjct: 1110 NDIVAGYSSDPDACSKVQTLCINSGAVPNFSLRNGVLYFQNRLWVGHNVDVQQRILANLH 1169
Query: 1051 ASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTP 1110
+ GHSG++ T R+ F WP ++ +++ C CQ K K G+LQPLP P
Sbjct: 1170 TAAVGGHSGIQVTYQRVKQLFAWPRLRATVVQYVQACSVCQQAKSEHVKYPGMLQPLPVP 1229
Query: 1111 AQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRL 1170
W+ +S+DF+ GLP S V+VD+ SKY+HFV L F+A +A + I RL
Sbjct: 1230 DHAWQIVSLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAEAYMQHIHRL 1289
Query: 1171 HGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFA 1230
HG+P+S++SDRD+IF S W LFR+ GT+LR S++YHP+TDGQTE VN+ LET+LRCF
Sbjct: 1290 HGLPQSLISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRCFV 1349
Query: 1231 GEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQ 1290
P W ++L LAE WYNTSFHSA G TPF+ +YG P + L E L
Sbjct: 1350 HACPSQWSRWLALAEYWYNTSFHSALGTTPFEVLYGHKPRYFGLSASAACRSDDLVEWLH 1409
Query: 1291 QRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLA 1350
+R + ++ +L RAQ RMK Q D+ R E +F WV L+LQP+ Q+S+ R + KL+
Sbjct: 1410 EREKMQALIRDHLLRAQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTRANRKLS 1469
Query: 1351 KRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
RFYGPF+V ++G+VAY LDLP +S +H V HVS L
Sbjct: 1470 FRFYGPFQVLDKVGTVAYRLDLPSSSLIHPVVHVSQL 1506
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 897 bits (2318), Expect = 0.0
Identities = 513/1362 (37%), Positives = 763/1362 (55%), Gaps = 73/1362 (5%)
Query: 49 QTLPKSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMH 108
+ + K +L++ F G P++WL E+F+++ TP Q + L ++QG A+ WYR +
Sbjct: 200 EAIIKGPRLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIG 259
Query: 109 NNYQLSFWEAFTRALAIRFGPSAYENHQQ-ELFK--LQQTSTVAEYQTRFEK----VSNQ 161
+QL W + ++ RF SA + H+ ELF+ Q TV +Y +FE+ V +
Sbjct: 260 IPWQLITWPQWCAMVSTRF--SAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRRE 317
Query: 162 VVGLSPEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRP 221
L + + CFI GL +IK ++ KP + ++ K E + ++++ +
Sbjct: 318 HPYLQEQYLNSCFIGGLRGDIKHDVCGHKPQGLLESYWYTKNYE----RAANARKNLLNF 373
Query: 222 NQSHFTSPSTAIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEK 281
N++ F + + P Q R + + Q + V +ER+ C+ C E
Sbjct: 374 NRNRFQNQAG---PIQGRNVVNRGQPREQVEKK------------EERK----CWFCKEP 414
Query: 282 YTIGHKCQPRLFLLMLADEVQETQ-EAAISLLSDTVEDVTVPVHE--------EAMHFQL 332
+ H+C+ + L L E +E + E L+ ED + E E + F +
Sbjct: 415 WFPKHQCKVKKALNALLMEGEEGKDEGEEGELTGNQEDCKLEKEEAPPDDENQEELMF-V 473
Query: 333 SDQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMV 392
S A++G P T +NG V LVD+GS++ F+ H + V+V
Sbjct: 474 SHNAVYGTTRPDTFSVIIQINGRRAVGLVDSGSTSTFMDQDYAVRNHCPLVSTDAKKVVV 533
Query: 393 GNGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSM 452
G + +P++ G TF F ++ L+G D +LG DW+ + D +
Sbjct: 534 AGGGELKSEVQVPELVYQIQGETFSNKFNIIPLKGYDVILGADWIYKYSPITLDLKKREL 593
Query: 453 SFVVNGKTCTLEGEPLPPPSH--ASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLT 510
KT ++ + P H +++ + IT +
Sbjct: 594 GITKGEKTVVIQ-DFTRPGKHLWVDSKKVDQILRKGGLGCLFQITRVKEE---------- 642
Query: 511 LENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPH 570
E P D E+LQ + V P GLPP R DH I L P N+RPYR PH
Sbjct: 643 -ETSHEIPEDIK----EILQEFPAVLKDPKGLPPRRNCDHVITLKSGAEPPNLRPYRVPH 697
Query: 571 SQKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPI 630
QKEAM I+ ++++ + S PYSSP ++++KKDG+WR CVD+R LN+ T+K++FP+
Sbjct: 698 YQKEAMEKIIAELIESKEIQVSDIPYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPM 757
Query: 631 PTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAP 690
P I++LLDEL GA FSKLDLRSG+HQIR+AT+D KTAFRT GHYE+ VMPFGLTNAP
Sbjct: 758 PIIEDLLDELNGAKVFSKLDLRSGYHQIRMATQDIPKTAFRTHLGHYEYQVMPFGLTNAP 817
Query: 691 STFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCI 750
+TFQ+ MN +L PFLR++VLVFFDDIL+YS + H H+++V++VL +K KL KC
Sbjct: 818 TTFQSLMNQVLAPFLRKYVLVFFDDILIYSKDWAEHKEHIRQVMKVLEENKLVVKLKKCA 877
Query: 751 FGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAH 810
FG+ SV+YLGHIIS +GV DP KV+ I +P P+++T LR FLG+TG+YRRFIKNY
Sbjct: 878 FGLPSVTYLGHIISQDGVATDPKKVEKIATYPTPKSVTDLRKFLGMTGYYRRFIKNYGIV 937
Query: 811 ASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGT 870
L D+LK++ W ++F+ LK + ++PVL LPDF+ F IE DA G
Sbjct: 938 CRPLHDMLKKEG------FQWEREQTEAFETLKTHMCTSPVLSLPDFTKEFVIEADACGN 991
Query: 871 AVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQ 930
+GAVL Q G P+++FSK L + QS Y +E A+ EA+KKWR Y++G + I TDQQ
Sbjct: 992 GIGAVLMQSGRPLAYFSKTLGPKAAAQSIYEKEAMAILEALKKWRHYVLGSRLIIKTDQQ 1051
Query: 931 SLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSP 990
SLK +M Q Q K KL+ +DY I YK G EN VADALSR +E AI++
Sbjct: 1052 SLKFMMNQRLVEGIQHKLLLKLMEYDYSIEYKAGKENLVADALSRIPPAE--QCQAITTV 1109
Query: 991 VPEIITQLKQYYKTPEGIQLIV-----DKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSI 1045
+PE + +++ Y+ I+ + T + +L +K ++V E+ + R +
Sbjct: 1110 IPEWVRDIQRSYEGDVQAHKILSLIGTEGDTDGSYSQEAGLLRYKGRIYVGENTEIREEL 1169
Query: 1046 LSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQ 1105
+ YH+S GHSG++ T R+ + F WPG++ + FI++C CQ K GLL
Sbjct: 1170 IRSYHSSAFGGHSGMRATYHRIKSLFYWPGLKKAVEGFIRECPICQVTKAEHIHIPGLLD 1229
Query: 1106 PLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSS 1165
PL P W I+MDF+ GLP S+G V V+VDRL+KYAHF+A+ +T + F +
Sbjct: 1230 PLEVPDMAWAHITMDFVEGLPKSNGKDVILVVVDRLTKYAHFIAMAHPYTVEQVVELFMN 1289
Query: 1166 EICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETY 1225
I RLHG+P +I++DRD+IF S ++++F+ +L+FST+YHP+TDGQTE VN+ LE+Y
Sbjct: 1290 NIHRLHGMPMAIITDRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQTDGQTERVNQCLESY 1349
Query: 1226 LRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSL 1285
LR ++P W+ +L LAE WYNT++H++ MTPFQA+YG PPP + + + +
Sbjct: 1350 LRSMTFQEPTRWHSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEA 1409
Query: 1286 DESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRL 1345
+++Q+ I++ LK +L AQ R+K D++R E T V L+LQPYRQ + R
Sbjct: 1410 RVTIEQKDAIIQKLKYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQTAFGIRG 1469
Query: 1346 SNKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
S KL +FYGPF++ ++G VAY+L LP S +H VFHVS L
Sbjct: 1470 SLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQL 1511
>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 894 bits (2311), Expect = 0.0
Identities = 514/1361 (37%), Positives = 752/1361 (54%), Gaps = 58/1361 (4%)
Query: 43 PPQTNPQTLPKSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALS 102
PP + PQ F+G P W + E +F ++ P +++ + G+A
Sbjct: 146 PPMSCPQ------------FNGDNPQLWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAF 193
Query: 103 WYRWMHNNYQLSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQV 162
W + + + + W + RF + ++ + QTS+VA+Y RF+ + +Q+
Sbjct: 194 WLQSVRSQLAGATWFELCDRVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQL 253
Query: 163 VGL----SPEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRV 218
+ P + F+ GL I+ + + +P + A +A E ++ +S +
Sbjct: 254 MAYGGSNDPAYFVTKFVDGLKDHIRVVVMVQRPQDLDSACTVALLQEEALEGVQSVSNKK 313
Query: 219 FRPNQSHFTSPSTAIVPS--QPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCF 276
T PS + Q R + ++ K S SA RR+ GLCF
Sbjct: 314 NETTTFLKTKPSHNLTSPTFQARSIPFTNIEDKRGVEFSKGRDDKVSALRSYRRSKGLCF 373
Query: 277 NCDEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTVEDVT---VPVHEEAMHFQLS 333
C EK+ HKC + ++ +E +L +D E+ P EE +S
Sbjct: 374 VCGEKWGRDHKCATTV-------QLHVVEELINALKTDPEENCNSEGAPESEEDSLMAIS 426
Query: 334 DQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVG 393
QAL+G S ++++ V +++LVD+GS+++F+ + + L V V
Sbjct: 427 FQALNGTDSSKSIRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQKLNQAIKVQVA 486
Query: 394 NGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMS 453
+G+ + C ++P+ G++F F ++ L D +LG+DWL+ + D+ ++
Sbjct: 487 DGSQLFCDSFLPNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWVHKWIA 546
Query: 454 FVVNGKTCTLEG--EPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTL 511
F +G+ L+G L S + Q + A+ + + +T P+ +
Sbjct: 547 FQHHGQAVQLQGIHPQLSTCFPISNDQLQGMSKKGAVMCLVHLNVAETLTATTVPEIVQ- 605
Query: 512 ENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHS 571
+L + +FS P LPP R DHHI L+ PVN+RPYRY +
Sbjct: 606 ---------------PILNEFQEIFSEPTELPPKRNCDHHIPLVEGAKPVNLRPYRYKPA 650
Query: 572 QKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIP 631
K+ + + +ML+ G++ PS+SP+SSP LL+KKKDGTWR C+D+R LN +T+K ++P+P
Sbjct: 651 LKDEIERQVAEMLRSGVIQPSSSPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVP 710
Query: 632 TIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPS 691
IDELLDEL G+ FSKLDLR+G+HQIR+A D +KTAF+T GHYE+ VM FGLT AP+
Sbjct: 711 VIDELLDELAGSKWFSKLDLRAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPA 770
Query: 692 TFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIF 751
TF +AMN+ L P LR+F LVFFDDIL+YSP+L H+ H++ VL++L +H++ KLSKC F
Sbjct: 771 TFLSAMNETLSPVLRKFALVFFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSKCSF 830
Query: 752 GVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHA 811
+SYLGH+I A GV DP+K+Q +V WP P + LRGFLGL G+YR+F++++ +
Sbjct: 831 AQQEISYLGHVIGAAGVATDPAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFGLIS 890
Query: 812 SHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTA 871
LT LLK K W+ +FQ LK +++APVL LPDFS F IETDAS
Sbjct: 891 KPLTQLLK-----KGIPFKWTPEIESAFQQLKQALVAAPVLALPDFSKHFTIETDASDVG 945
Query: 872 VGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQS 931
+GAVLSQ+ HPI++ S+ L + + STY +E A+ AV+ WR YL +F I TD S
Sbjct: 946 IGAVLSQEKHPIAYLSRALGPKTRGLSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHS 1005
Query: 932 LKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPV 991
L HL Q TP Q K TKLLG Y+I Y+ G N ADALSR S + +AAIS +
Sbjct: 1006 LMHLTEQRLHTPWQQKAFTKLLGLQYKICYRKGVSNAAADALSR-RESPISEVAAISECI 1064
Query: 992 PEIITQLKQYYKTP-EGIQLIVDKSTLPHFRVHHE----VLYFKDGLFVPEHDQWRTSIL 1046
P + +L Q Y+ + QL+ + + P+ R ++ +L +K ++V + + ++
Sbjct: 1065 PSWMQELMQGYQLDGQSKQLLAELAISPNSRKDYQLCQGILKYKGKIWVGNNTALQHKLV 1124
Query: 1047 SEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQP 1106
+E HA+P GHSG T ++ + F WPG++ K ++ C C K A+ GLLQP
Sbjct: 1125 NELHATPLGGHSGFPVTYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQP 1184
Query: 1107 LPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSE 1166
LP PA W+ IS+DFI GLP S + V+VD+ SKY+HF+ L F A +A F
Sbjct: 1185 LPVPAGAWQTISLDFIEGLPRSSHYNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKN 1244
Query: 1167 ICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYL 1226
I +LHG+PR+I+SDRDKIF S FW LF +GT L S+AYHP++DGQTE VN+ LE YL
Sbjct: 1245 IYKLHGLPRAIISDRDKIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYL 1304
Query: 1227 RCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLD 1286
RCF P W +L+LAE WYNTSFHS TPF+ +YG PS I L
Sbjct: 1305 RCFVHAAPHKWSSWLYLAEFWYNTSFHSTLNKTPFEVLYGY-TPSHFGIGLDDCQIADLH 1363
Query: 1287 ESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLS 1346
E +R + + L+ +L RAQ +MK Q DK R F WV L+LQPY Q +A R
Sbjct: 1364 EWHTERKFMQQLLQQHLNRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRAC 1423
Query: 1347 NKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
+KLA R+YGPF+V R+G+VAY + LP TS +H VFHVS L
Sbjct: 1424 HKLAFRYYGPFQVMSRVGTVAYHIQLPATSSIHPVFHVSQL 1464
>gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 890 bits (2300), Expect = 0.0
Identities = 519/1349 (38%), Positives = 746/1349 (54%), Gaps = 72/1349 (5%)
Query: 56 KLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLSF 115
++ FDG P W E +F ++ P + + + + G A SW + + +
Sbjct: 174 RVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLS 233
Query: 116 WEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRF----EKVSNQVVGLSPEAVL 171
W F R L RFG +E+ ++LF + Q+ TVAEY +F + +S P
Sbjct: 234 WSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYT 293
Query: 172 DCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPST 231
FI GL +IK + + +P ++ A +A E + + + + R P+ SH P T
Sbjct: 294 MRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQE---EATTARRWRRSEPSSSH-AGPKT 349
Query: 232 AIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKC--- 288
+ S S+ + + + S +L S + + RRA GLC C EK+ GHKC
Sbjct: 350 GVQLSASTKWTSNKDSTQSASHSD----KLESLR-RFRRAKGLCDKCAEKWNPGHKCAAT 404
Query: 289 -----QPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSP 343
++ L++ +EV E SD P E + +S A G
Sbjct: 405 AQLHAMEEVWSLLVDEEVPE---------SDLSPPEPAP---EQLFVTISKSAWTGSTGR 452
Query: 344 RTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGY 403
+TLK + HP+++L+D+GSS+ F+ + L + T V V NGA + C
Sbjct: 453 QTLKLNGSIQNHPLLILIDSGSSHTFLNDQLRPHLQGVTSMASTLQVQVANGAMVTCHYK 512
Query: 404 IPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTL 463
+ + +F + L D V+G+DWL++ + D++ + G + L
Sbjct: 513 LLQAQWQIQNCSFTSDVSFLPLPYYDMVVGMDWLESFSPMRVDWAQKWLIIPYQGSSVLL 572
Query: 464 EGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDP 523
+G P+ D + E + F+ S S S PD P
Sbjct: 573 QGNTAGVPA-------------DTVIE---LLFMESASSVSSS------------PDSHP 604
Query: 524 ALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDM 583
A+ LLQ ++ VF+ P GLPP+R DH I L+ PV+VRPYRYP + K+ + + +M
Sbjct: 605 AIQALLQQFSSVFAEPQGLPPSRDCDHAIPLVEGAQPVSVRPYRYPPALKDKIEKQVQEM 664
Query: 584 LQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGA 643
L +G++ S S ++SPVLL+KKKD TWRFCVD+R LN++T+K ++P+P D+L+DEL +
Sbjct: 665 LHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNALTLKSKYPVPVFDQLIDELAHS 724
Query: 644 SHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRP 703
FSKLDLR+G+HQI L + +KTAF+T GHYEF VM FGLT AP+TF +AMN+ L+P
Sbjct: 725 KWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVMAFGLTGAPNTFLSAMNETLKP 784
Query: 704 FLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHII 763
LR+ LVFFDDIL+YS S H+ HL++VL++LLS + KLSKC F T+ +YLGHII
Sbjct: 785 VLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLLLSDNWKVKLSKCEFAKTNTAYLGHII 844
Query: 764 SANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQK 823
S GV PSK+QAI W VP + LR FLGL GFYR+F+K++ + L DLLK
Sbjct: 845 SEQGVSTYPSKIQAISSWAVPTSAKELRCFLGLAGFYRKFVKHFGIISRPLFDLLK---- 900
Query: 824 DKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPI 883
KHTL W+ + +F+ LK +++APVL LPDFS F I TDAS VGAVL Q GHP+
Sbjct: 901 -KHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFCIHTDASYYGVGAVLMQSGHPL 959
Query: 884 SFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTP 943
+F SK L + Q STY +E A+ A+ +WR YL +F IYTD +SL L Q T
Sbjct: 960 AFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAEFIIYTDHRSLAQLNEQRLHTI 1019
Query: 944 DQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQ-YY 1002
Q K TKL G Y+I Y+ G +N ADALSR E AIS VP + ++ + Y
Sbjct: 1020 WQQKMYTKLAGLQYKIVYRKGVDNGAADALSR-KVQEDSHCCAISHSVPTWLQEVVEGYD 1078
Query: 1003 KTPEG----IQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHS 1058
K P QLI++ + F +H ++ K+ +++ + Q + +L H + GHS
Sbjct: 1079 KDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGNLQLQQKVLQAMHDTAVGGHS 1138
Query: 1059 GLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDIS 1118
G T ++ F WPG++ + +++ C CQ +K AK GLLQPL P Q W IS
Sbjct: 1139 GAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQPLEVPPQAWHTIS 1198
Query: 1119 MDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIV 1178
+DFI GLP S + V+VD+ SKY HF+ L FTA +A F + +LHG+P +I+
Sbjct: 1199 LDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLDNVYKLHGLPVNII 1258
Query: 1179 SDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWY 1238
SDRD+IF S FW+ LF++ GT L S++YHP++DGQTE +N+ LET+LRC+ P W
Sbjct: 1259 SDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLETFLRCYVHTCPSRWS 1318
Query: 1239 KFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILES 1298
+L +AE WYNT+ HS G TPF+ +YG P V L+ L++R + +
Sbjct: 1319 AWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQPELETWLKERELMTKV 1378
Query: 1299 LKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFR 1358
+K +L RAQ RMK Q DK R E F WV L+LQPY Q S+A R ++KL+ +F+GPF+
Sbjct: 1379 IKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNHKLSFKFFGPFQ 1438
Query: 1359 VKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
+ R+GSVAY L LP +S +H +FHVS L
Sbjct: 1439 ITDRLGSVAYRLALPASSSIHPIFHVSQL 1467
>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
gi|25403233|pir||G86474 probable protein gypsy/Ty3
element polyprotein [imported] - Arabidopsis thaliana
Length = 1447
Score = 882 bits (2280), Expect = 0.0
Identities = 511/1323 (38%), Positives = 748/1323 (55%), Gaps = 74/1323 (5%)
Query: 56 KLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYR-WMHNNYQLS 114
K+ FDGS+ EWLF E+FF + TP ++++V+ + A +W+ ++ + L
Sbjct: 116 KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLD 175
Query: 115 F---WEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVL 171
W + + L RF A ++ EL KLQ+T + EY +FE + ++ LS E ++
Sbjct: 176 VFFNWPEYVKLLKDRF-EDACDDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLV 233
Query: 172 DCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPST 231
+++GL + + + + +P +V + + K E
Sbjct: 234 SVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYER------------------------- 268
Query: 232 AIVPSQPRPLASSSQAPKPVAS--SSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQ 289
+ P+ SS+ + K S S P+K + Q+ LGLC+ CDEK+T H
Sbjct: 269 ----AHPKKTVSSTWSQKGTRSGGSYRPVKEVE----QKSDHLGLCYFCDEKFTPEHYLV 320
Query: 290 PRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTLKFT 349
+ L D V E E A+ +LSD +D HE+ Q+S A+ G +T+
Sbjct: 321 HKKTQLFRMD-VDEEFEDAVEVLSD--DD-----HEQKPMPQISVNAVSGISGYKTMGVK 372
Query: 350 AIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEV 409
V+ + +L+D+GS++NF+ + L V V V +G + G I
Sbjct: 373 GTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGFTW 432
Query: 410 TFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLP 469
TF ++ LQG D VLG+ WL+TLG++ +F M F + L G
Sbjct: 433 KLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITG 492
Query: 470 PPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELL 529
+ Q+ T A + + S + ++ L++ + + + ++
Sbjct: 493 SVRDIKAHKLQK---TQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVE-ESVVQNIV 548
Query: 530 QSYAPVFSTPHGLPPTRF-HDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGI 588
+ + VF+ P LPP R HDH I LL PVN RPYRY QK+ + I+ DM++ G
Sbjct: 549 EEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGT 608
Query: 589 VVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSK 648
+ S+SP++SPV+L+KKKDGTWR CVD+ LN +T+KDRF IP I++L+DELGG+ FSK
Sbjct: 609 IQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSK 668
Query: 649 LDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRF 708
+DLR+G+HQ+R+ +D KTAF+T +GH+E+LVM FGLTNAP+TFQ+ MN + R FLR+F
Sbjct: 669 IDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKF 728
Query: 709 VLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGV 768
VLVFFDDIL+YS S+ H HL+ V EV+ HK +AK SK +LGH ISA +
Sbjct: 729 VLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK--------EHLGHFISAREI 780
Query: 769 GPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTL 828
DP+K+QA+ +WP P + +RGFLG G+YRRF++N+ A L L K D
Sbjct: 781 ETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDG------ 834
Query: 829 LPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSK 888
WS A +F LK ++ +APVL LP F F +ETDA G + AVL QKGHP+++ S+
Sbjct: 835 FCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISR 894
Query: 889 KLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKW 948
+L + H S Y +E+ A AV+KWR YL+ F I TDQ+SLK+L+ Q TP Q +W
Sbjct: 895 QLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQW 954
Query: 949 ATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTPEGI 1008
KLL FDYEI Y+ G EN VADALSR SE+ L A+S + + +++ Y++ +
Sbjct: 955 LPKLLEFDYEIQYRQGKENLVADALSRVEGSEV-LHMALSIVECDFLKEIQVAYESDGVL 1013
Query: 1009 QLIVDK-----STLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPT 1063
+ I+ H+ ++L K + VP + +L H S G SG +
Sbjct: 1014 KDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDAS 1073
Query: 1064 LARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFIT 1123
R+ + F W G+ + + FI+ C CQ K A GLLQPLP P +IW D+SMDFI
Sbjct: 1074 HQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIE 1133
Query: 1124 GLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDK 1183
GLP S G +V V+VDRLSK AHFVAL ++A ++A F + + HG P SIVSDRD
Sbjct: 1134 GLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDV 1193
Query: 1184 IFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHL 1243
+F S FW++ F++ G +LR S+AYHP++DGQTEVVNR LE YLRC +P W K+L L
Sbjct: 1194 LFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPL 1253
Query: 1244 AELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANL 1303
AE WYNT++HS++ MTPF+ VYG+ PP L Y+PG S + + SLQ+R +L LK +L
Sbjct: 1254 AEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHL 1313
Query: 1304 QRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRI 1363
RAQHRMK D+ R E TF+ +V ++LQPYRQ+S+ R++ KL+ +++GP+++ +
Sbjct: 1314 MRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKC 1373
Query: 1364 GSV 1366
G V
Sbjct: 1374 GEV 1376
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 882 bits (2278), Expect = 0.0
Identities = 521/1357 (38%), Positives = 750/1357 (54%), Gaps = 70/1357 (5%)
Query: 53 KSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQ 112
K +L+++ F G P++WL E+FF++ TP Q + L ++ G A W+R + +Q
Sbjct: 228 KGPRLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPWQ 287
Query: 113 LSFWEAFTRALAIRFGPSAYENHQQELFK--LQQTSTVAEYQTRFEKVSNQVVG----LS 166
+ W + + RF +A + ELF+ Q TV +Y +FE+ + V L
Sbjct: 288 VITWPQWCAMVCTRFS-TANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRRDHPYLQ 346
Query: 167 PEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHF 226
CFISGL +IK ++ KP + ++ AK E K SR + F N+
Sbjct: 347 EPYFTSCFISGLRGDIKHDVCGQKPQGLLESYWYAKNYE-KAANSRKAAAN-FNRNR--- 401
Query: 227 TSPSTAIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGH 286
L + K V + P R + +E++ C+ C E + H
Sbjct: 402 --------------LQTGGNTGKNVYNKGQP--RQEGDKKEEKK----CWFCKEPWFPRH 441
Query: 287 KCQPRLFLLMLADEVQETQEAAISLLSDT----------VEDVTVPVHEEAMHFQLSDQA 336
+C+ + + L E +E+ E + + + + T V EE M +S A
Sbjct: 442 QCKVKQAIHALLVENEESVEVEEDSVEEEEIKGEKQGEKLPEQTENVQEELM--SISQSA 499
Query: 337 LHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGA 396
++G P T VNG V LVD+GS+ F+ + + V+V G
Sbjct: 500 VYGLTRPDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQCTLENTKMRKVIVAGGG 559
Query: 397 HIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVV 456
+ +P +E G +F F ++ L+ D +LG DW+ + D M
Sbjct: 560 ELKSELIVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFKYSPITLDLRKREMKITK 619
Query: 457 NGKTCTLEGEPLPPPS-HASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLS 515
G+ ++ P S ++I A+ C Q + + S
Sbjct: 620 GGRELEIQDFTKPGKYFQVSNKKMGKMIKKGALG-CVI-------------QINAITDQS 665
Query: 516 TPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEA 575
+ +LQS+ V P GLPP R DH INL + P N+RPYR PH QK A
Sbjct: 666 NVEVGIPKDIQIVLQSFPKVLKEPKGLPPRRSCDHVINLKVGSEPPNLRPYRVPHFQKGA 725
Query: 576 MATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDE 635
M I+T++ + + S SPY SP ++++KKDG+WR CVD+R LN+ TIK++FP+P I++
Sbjct: 726 MEDIITELFRTQEIRISDSPYVSPAVMVRKKDGSWRLCVDYRQLNAQTIKNKFPMPIIED 785
Query: 636 LLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQA 695
LLDEL GA FSKLDLRSG+HQIR+A D KTAFRT GHYE+ VMPFGLTNAP+TFQA
Sbjct: 786 LLDELHGAKVFSKLDLRSGYHQIRMAEGDIPKTAFRTHLGHYEYNVMPFGLTNAPATFQA 845
Query: 696 AMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTS 755
MN +L PFLR+FVLVFF DIL+YS + S H+ H+K V++ L +++ +L KC FG+
Sbjct: 846 LMNQVLAPFLRKFVLVFFADILIYSKTQSEHLEHIKLVMQALSANQLVVRLKKCEFGLDR 905
Query: 756 VSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLT 815
VSYLGHIIS+ GV DP K+ I + P+N+T +R FLG+ G+YRRFIK Y L
Sbjct: 906 VSYLGHIISSEGVSTDPKKISDIKNRKPPKNVTEVREFLGMAGYYRRFIKGYGVICRPLH 965
Query: 816 DLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAV 875
DLLK+D W ++F+ LK+ + ++PVL LPDFS F IETDA G +GAV
Sbjct: 966 DLLKKDG------FKWGDTQQEAFELLKEKMCNSPVLALPDFSQPFVIETDACGIGIGAV 1019
Query: 876 LSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHL 935
L QKG P+++FSK L + QS Y +E A+ EA+KKWR Y++G I TDQQSLK +
Sbjct: 1020 LMQKGRPLAYFSKALGPKAAAQSVYEKEAIAILEALKKWRHYILGGSLIIKTDQQSLKFM 1079
Query: 936 MTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEII 995
M+Q Q K KL+ FDY I YK G EN VADALSR + + I+ VPE +
Sbjct: 1080 MSQRLVEGIQHKLLLKLMEFDYVIEYKSGKENLVADALSRSPNLKEEQCLPITVVVPEWV 1139
Query: 996 TQLKQYYK----TPEGIQLI-VDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYH 1050
+K+ Y+ + + LI D H+++ +L +K ++V E + R +L YH
Sbjct: 1140 QDIKRSYEEDIFAHKILSLIETDGDPERHYKLESGLLKYKGRIYVGETTEIRMLLLEAYH 1199
Query: 1051 ASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTP 1110
AS GHSG++ T R+ F WPG++ + + +I++C CQ K GLL PL P
Sbjct: 1200 ASYFGGHSGIRATYHRIKQLFYWPGLKKQVEHYIRECPTCQITKAEHIHIPGLLNPLEVP 1259
Query: 1111 AQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRL 1170
W I+MDFI GLP S G V V+VDRL+KYAHF+AL +T + F I +L
Sbjct: 1260 DMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHKL 1319
Query: 1171 HGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFA 1230
HG+P IV+DRD++F S+F++++F+ KLRFSTA+HP+TDGQTE VN+ LE+YLR
Sbjct: 1320 HGMPMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMT 1379
Query: 1231 GEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQ 1290
++P+ W+ +L LAE WYNT++H++ MTPFQA+YG PPP + + + + +L+
Sbjct: 1380 FQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQITEFAIPCNMSEEARVTLE 1439
Query: 1291 QRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLA 1350
+ IL+ LK+++ AQ R+K DK R E T E V L+LQPYRQ ++ R S KL
Sbjct: 1440 DKALILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKLR 1499
Query: 1351 KRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
++YGPF+V ++G+VAY+L LP + +H VFHVS L
Sbjct: 1500 SKYYGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQL 1536
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 873 bits (2256), Expect = 0.0
Identities = 511/1359 (37%), Positives = 740/1359 (53%), Gaps = 76/1359 (5%)
Query: 53 KSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQ 112
K +L++ F G P++WL E+FF++ TP Q + L ++ G AL W+ + +Q
Sbjct: 94 KGPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQ 153
Query: 113 LSFWEAFTRALAIRFGPSAYENHQQELFK--LQQTSTVAEYQTRFEKVSNQVVG----LS 166
+ W + + RF +A E+ ELF+ Q +TV +Y +FE + V L
Sbjct: 154 VIAWPQWCSMVCTRFS-AASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKRDHPYLQ 212
Query: 167 PEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHF 226
+ + CFI GL +IK ++ KP + + A + +R+ Q NQ
Sbjct: 213 EQYLTSCFIGGLRADIKYDVCGQKPQGLLETYWAANARKMVGNFNRNRNQNPLGGNQGRN 272
Query: 227 TSPSTAIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGH 286
+ R + +RR C+ C E + H
Sbjct: 273 AN------------------------------HRGQNRGEGDRREEKKCWFCKEPWFPRH 302
Query: 287 KCQPR--LFLLMLADEVQETQEAAIS-----LLSDTVEDVTVPVH---EEAMHFQLSDQA 336
+C+ + + L+ D+ QE +E + + +T E T EE M+ +S A
Sbjct: 303 QCKIKQAIHALLEEDDGQEDKETSNTGGDEEEKKETEESATSENESPTEELMY--ISQTA 360
Query: 337 LHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGA 396
+ G P T +NG V LVD+GS+ F+ + + T V+V G
Sbjct: 361 VQGTSRPDTFSVLIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGG 420
Query: 397 HIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVV 456
+ +PDI G F F ++ L+G D +LG DW+ + D +
Sbjct: 421 ELKTDVMVPDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISLDLKQRILGITK 480
Query: 457 NGKTCTLEGEPLPPPS-HASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLS 515
K L+ P S ++++ A+ + + T+E
Sbjct: 481 GNKVILLQDFTKPNKHFQISGKRLEKMLKKGALGMVIQVNVMSE----------TVEEEG 530
Query: 516 TPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEA 575
P+ + +++Q + V P GLPP R DH INL P N+RPYR PH QKEA
Sbjct: 531 HVIPE---DISDIIQQFPAVLKEPKGLPPKRECDHVINLQSGAVPPNIRPYRVPHYQKEA 587
Query: 576 MATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDE 635
M I+ ++++ + S SPYSSP ++++KKDG+WR CVD+R LN+ T+K++FP+P I++
Sbjct: 588 MENIINELIESKEIQTSDSPYSSPAVMVRKKDGSWRMCVDYRQLNAQTVKNKFPMPIIED 647
Query: 636 LLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQA 695
LLDEL GA FSKLDLRSG+HQIR+A +D HKTAFRT GHYE+ VMPFGLTN P+TFQ+
Sbjct: 648 LLDELNGARIFSKLDLRSGYHQIRMAEKDVHKTAFRTHLGHYEYQVMPFGLTNDPATFQS 707
Query: 696 AMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTS 755
MN +L PFLRRFVLVFFDDIL+YS + + H+ H+K V++ L + KL KC FG+ S
Sbjct: 708 LMNHVLAPFLRRFVLVFFDDILIYSKTRAEHLEHVKLVMQALQDNHLVIKLKKCAFGLAS 767
Query: 756 VSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLT 815
VSYLGH+IS +GV DP KV I +WP P+++T +R FLG+TG+YRRFI+ Y +
Sbjct: 768 VSYLGHVISQDGVATDPKKVGKIKNWPTPKDVTDVRKFLGMTGYYRRFIQGYGTICRPIH 827
Query: 816 DLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAV 875
D+LK++ W + +F+ LK + ++PVL LPDF F IE DA G +GAV
Sbjct: 828 DMLKKNG------FQWGADQTTAFETLKHKLRTSPVLALPDFDQAFTIEADACGVGIGAV 881
Query: 876 LSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHL 935
L Q G PI+FFSK L + QS Y +E A+ EA+KKWR Y++G K I TDQQSLK +
Sbjct: 882 LMQGGRPIAFFSKALGPKAAGQSIYEKEAMAILEALKKWRHYVLGSKLIIKTDQQSLKFM 941
Query: 936 MTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSE--LPLLAAISSPVPE 993
M Q Q K KL+ +DY I YK G EN VADALSR E ++ +PE
Sbjct: 942 MGQRLVEGIQHKLLLKLMEYDYTIEYKSGKENLVADALSRLPQKEAVADRCHPMTVVIPE 1001
Query: 994 IITQLKQYYKT---PEGIQLIVDKSTLP--HFRVHHEVLYFKDGLFVPEHDQWRTSILSE 1048
I +++ Y+ I ++ + P +++ +L +K ++V E R +++
Sbjct: 1002 WIVDIQRSYENDVQAHKILSLIGTAADPDREYKLEAGLLKYKGRIYVGEATDIRRQLITT 1061
Query: 1049 YHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLP 1108
YH+S GHSG++ T R+ F W G++ E + FI++C CQ K GLL PL
Sbjct: 1062 YHSSSFGGHSGMRATHHRIKMLFYWHGMRGEVERFIRECPTCQITKSEHVHIPGLLNPLE 1121
Query: 1109 TPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEIC 1168
P W I+MDFI GLP S G V V+VDRL+KYAHF+AL + + F + I
Sbjct: 1122 IPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFIALAHPYDVEQVVEAFMNNIH 1181
Query: 1169 RLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRC 1228
+LHG+P I++DRD+IF S ++++F+ KLRFSTAYHP+ DGQTE VN+ LE+YLR
Sbjct: 1182 KLHGMPMVIITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHPQMDGQTERVNQCLESYLRN 1241
Query: 1229 FAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDES 1288
++P WY +L LAE WYNT+FH+A MTPF+A+YG PP + + + + +
Sbjct: 1242 MTFQEPHKWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSPPQINEFSVPCNISEEARVT 1301
Query: 1289 LQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNK 1348
++++ IL LK +L AQHRMK DK+R E E V L+L+PYRQ + R S K
Sbjct: 1302 IEEKEAILNKLKNSLADAQHRMKYFADKNRTERNLEVGDMVYLKLKPYRQSAFGIRGSLK 1361
Query: 1349 LAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
L +FYGPF+V ++IG +AY+L LP +++H VFHVS L
Sbjct: 1362 LRSKFYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQL 1400
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 873 bits (2255), Expect = 0.0
Identities = 519/1347 (38%), Positives = 733/1347 (53%), Gaps = 185/1347 (13%)
Query: 57 LQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLSFW 116
+++ FDGS W+ E+FF+ A++L LVS + G+ALSWY W + W
Sbjct: 130 VEMPMFDGSGIYGWIARVERFFRSGGYNEAEQLALVSVSVSGEALSWYNWAISRGDFVSW 189
Query: 117 EAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLDCFIS 176
L +RFG Q LF ++QT +VAEY RFE +S+QV GL + + F++
Sbjct: 190 LKLKSGLMLRFGNLKLRGPSQSLFCIKQTGSVAEYVQRFEDLSSQVGGLDDQKLEGIFLN 249
Query: 177 GLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPSTAIVPS 236
GL E++ + + KP ++ + + +A+ +E + +RV +
Sbjct: 250 GLTGEMQELVHMHKPQNLPEMVAVARSMETSV------MRRVVQ---------------- 287
Query: 237 QPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQPRLFLLM 296
K L ++ E+R G+CF CD ++ HKC + ++
Sbjct: 288 ----------------------KELQLVKLDEKRRKGICFRCDGPWSKEHKCPNKELRVL 325
Query: 297 LADEVQETQEAAISLLSDTVEDVTVPVHEEAMHF-QLSDQALHGRPSPRTLKFT-AIVNG 354
E + L S++VE+ H+ F +LS + G PS T+K +I G
Sbjct: 326 TVINGFEMEV----LESNSVEE---EFHDSVAQFAELSFSSYMGLPSYTTIKMKGSICKG 378
Query: 355 HPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTF--- 411
+ H + P F + +G G + G + +T
Sbjct: 379 E---------------------WCHTQFY-FPNFHIRLGTGITVQGLGLCDKVTMTLPVG 416
Query: 412 AGNTFHIP--FYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLP 469
G + F +DL D +LG+ WL+TLG ++ +SF+ +G+T TL G+P
Sbjct: 417 CGQELELTTHFITLDLGPVDVILGIAWLRTLGDCKVNWERHELSFLYHGRTVTLRGDP-- 474
Query: 470 PPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELL 529
E T ++L++ ST + L L
Sbjct: 475 --------------------ELDTFK-------------MSLKSFSTKFRLQNKELEVSL 501
Query: 530 QSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIV 589
S+ + GLPP + ++H I+LLP T ++VRPYRYPH+ KEAM ++++ML GI+
Sbjct: 502 NSHQNL----KGLPPIKGNEHAISLLPGTRAISVRPYRYPHAHKEAMEGLVSEMLDNGII 557
Query: 590 VPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKL 649
S SP+SSPVLL+KKKD +WRFCVD+R+LN TI ++FPIP ID+LLDEL GA FSKL
Sbjct: 558 RASKSPFSSPVLLVKKKDQSWRFCVDYRALNRATIPNKFPIPMIDQLLDELHGAIIFSKL 617
Query: 650 DLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFV 709
DLR+G+HQIR+ ED KT FRT DGH+EFLVMPFGL+NAP+TFQ++MND+LRPFLR+FV
Sbjct: 618 DLRAGYHQIRMKVEDIEKTTFRTHDGHFEFLVMPFGLSNAPATFQSSMNDMLRPFLRKFV 677
Query: 710 LVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVG 769
LVFFDDIL+YS + H HL VL+VL H+FYA K HI GV
Sbjct: 678 LVFFDDILIYSRNEQEHEEHLAMVLKVLEEHQFYANRKKPY----------HI--TQGVS 725
Query: 770 PDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLL 829
DP+K A+ W P+++ LRGFLGLTG+YRRF+K Y A LT+LLK+D
Sbjct: 726 TDPTKTVAMTKWVTPQSVKELRGFLGLTGYYRRFLKGYGTLARPLTELLKKDS------F 779
Query: 830 PWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKK 889
WS +A ++F LK + +APVL LPDF K H
Sbjct: 780 VWSESAQEAFDALKRAMSTAPVLALPDFG--------------------KVH-------G 812
Query: 890 LTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWA 949
LT + Q + Y RE+ A+ +++KW+ YL+G +F ++TDQ+SLK L Q + D KW
Sbjct: 813 LTSKEQLKPVYERELMAIVLSIQKWKHYLMGRRFVLHTDQKSLKFLQEQREVSMDYQKWL 872
Query: 950 TKLLGFDYEIFYKPGSENRVADALSR----CHSSELPLLAAISSPVPEIITQLKQYYKTP 1005
TKLL ++++I YK G +N+ AD LSR S LL A + P + L + +
Sbjct: 873 TKLLHYEFDILYKLGVDNKAADGLSRMVQPTGSFSSMLLMAFTVPTVLQLHDLYEEIDSN 932
Query: 1006 EGIQLIVD-----KSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGL 1060
+Q +V K + V L+ K L +P+ ++ IL+EYH+ GHSG+
Sbjct: 933 AHLQHLVKECLSAKQGTSAYTVKEGRLWKKQRLIIPKDSKFLPLILAEYHSGLLGGHSGV 992
Query: 1061 KPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMD 1120
T+ R+ SF+W G+ + + F+ +C CQ KY +GLLQPLP P Q+WEDIS+D
Sbjct: 993 LKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPAGLLQPLPIPTQVWEDISLD 1052
Query: 1121 FITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSD 1180
F+ GLP DRLSKY HF+ L F A +A F E+ +LHG P SIVSD
Sbjct: 1053 FVEGLP------------DRLSKYGHFIGLKHPFNAVDVARIFIHEVVKLHGFPASIVSD 1100
Query: 1181 RDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKF 1240
RD FLS FW+D F++ GTKL++STA+HP+TDGQTEV+NR LETYLRCFA P++W+++
Sbjct: 1101 RDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRTLETYLRCFASAHPKTWFQY 1160
Query: 1241 LHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLK 1300
L AELWYN+SFH+ TPF+ +YGR PP ++ + S+ L+ L+QR +L +K
Sbjct: 1161 LPRAELWYNSSFHTTIKTTPFKVLYGRDPPPIMRFEANSTKNCELEGLLKQRDLMLADIK 1220
Query: 1301 ANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVK 1360
+L AQ MK DK RREV F+ V L+L+PYRQ S+ R+ KLA +++GPF +
Sbjct: 1221 EHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNSVTKRVCQKLAAKYFGPFEIM 1280
Query: 1361 RRIGSVAYELDLPPTSKLHNVFHVSLL 1387
RIG VAY L LP SK+H VFHVS L
Sbjct: 1281 ERIGKVAYRLKLPEGSKIHLVFHVSQL 1307
>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18958673|gb|AAL82656.1| retrotransposon protein,
putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 1338
Score = 792 bits (2046), Expect = 0.0
Identities = 451/1121 (40%), Positives = 630/1121 (55%), Gaps = 88/1121 (7%)
Query: 272 LGLCFNCDEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQ 331
LG C T+ + L LL + E Q+ DT D + A +
Sbjct: 191 LGELAACRRTTTVDDYAERFLDLLTRTGYLSEDQQLGED---DTDNDSATDQADAAATLR 247
Query: 332 LSDQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVM 391
+S A G + + TA + + L+D+G + F+ T + + P V
Sbjct: 248 ISLHAATGVRASDAMHITAHLGDTDLYTLIDSGLMHTFLSQDTAARVGRAPQPRMGLNVT 307
Query: 392 VGNGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPS 451
V NG + C G PD+ + AG F Y DF++ +
Sbjct: 308 VANGDKVACPGVFPDMPLQIAGEEFATDVY------------------------DFTVLT 343
Query: 452 MSFVVNGKTCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTL 511
MSF H +T L P P+ L
Sbjct: 344 MSF------------------------------------WHRVT-LHGLPGHQRPRALAC 366
Query: 512 ENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHS 571
+ L LL+ +A VF+ P GLPP R H I LLP T PV VRPYRYP
Sbjct: 367 APAAL--------LDSLLEEFADVFTEPTGLPPARDRSHRIQLLPGTAPVAVRPYRYPVR 418
Query: 572 QKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIP 631
K+ + M + G++ STS +SSPVLL+KK DG+WRFCV++R+LN T+KD++PIP
Sbjct: 419 HKDELERQCRVMEENGLIHRSTSAFSSPVLLVKKADGSWRFCVNYRALNERTVKDKYPIP 478
Query: 632 TIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPS 691
+DELLDEL GA+ FSKLDLRSG+HQ+R+ +D KTAFRT DG YEFLV+PFGLTNA +
Sbjct: 479 VVDELLDELHGAAIFSKLDLRSGYHQVRMHPDDIDKTAFRTHDGLYEFLVIPFGLTNALA 538
Query: 692 TFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIF 751
TFQ+ MND+LRPFLRRFVLVFFDDILVYSP+ ++H+ HL+ V L + + + K +KC F
Sbjct: 539 TFQSLMNDVLRPFLRRFVLVFFDDILVYSPTWTSHLQHLRTVFTALWAAQLFVKHTKCSF 598
Query: 752 GVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHA 811
G SV+YLGHIIS +G D +K+QA+ +WP PR+ LRGFLGL +YR+FI+++ + A
Sbjct: 599 GDPSVAYLGHIISQHGFAMDAAKIQAVAEWPRPRSPKELRGFLGLASYYRKFIQDFGSVA 658
Query: 812 SHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTA 871
+ LT LL++D W+ A D+FQ LK + + PVL LPDF+ F +E DASGT
Sbjct: 659 APLTQLLRKDS------FAWAPATDDAFQRLKLALTTTPVLSLPDFNRPFVVECDASGTG 712
Query: 872 VGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQS 931
GAVL Q PI++FS+ + + + Y RE+ ++ +AV+ WR YL G +F + TD S
Sbjct: 713 FGAVLHQGEDPIAYFSRPIATRHHALAAYERELISLVQAVRHWRPYLWGRQFIVKTDHYS 772
Query: 932 LKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPV 991
LK L+ Q T Q W +KLLGFD+ + YKPG +N ADALS C ++ +S+P
Sbjct: 773 LKFLLDQRLSTIPQHHWVSKLLGFDFVVEYKPGKQNAAADALS-CRAAPDSQAFVLSTPT 831
Query: 992 PEIITQLKQYYKTPEGIQLIVDK-----STLPHFRVHHEVLYFKDGLFVPEHDQWRTSIL 1046
+++ ++ T +Q + D+ T P + V ++ +K +++P W + ++
Sbjct: 832 FDLLKDIRTAGDTDPALQALRDEINSGTRTTP-WAVIDGLVTYKRRIYIPPGSPWVSVVV 890
Query: 1047 SEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQP 1106
+ H GH G++ TL RL F+ P + I+ CL CQ NK +GLL P
Sbjct: 891 AAAHDD---GHEGIQKTLHRLRRDFHTPDDRRVVHDHIQGCLTCQRNKTDHLHPAGLLLP 947
Query: 1107 LPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSE 1166
LP P+ IW D++MDF+ GLP G +V +VDR SKYAH +AL ++TA ++A F +
Sbjct: 948 LPVPSAIWSDVAMDFVEGLPRVGGKSVILTVVDRFSKYAHLIALAHSYTAETVARAFFVD 1007
Query: 1167 ICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYL 1226
I RLHG+P SIVSDRD +F S FW LF TKL STA+HP++DGQ++ VN+ + L
Sbjct: 1008 IVRLHGVPESIVSDRDPVFTSAFWTALFTATCTKLHRSTAFHPQSDGQSKAVNKAIAMCL 1067
Query: 1227 RCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLD 1286
RC G++ R W ++L AE YNTSFH+A TPF+ VYGR PPS+ AY + ++
Sbjct: 1068 RCMTGDRSRQWLRWLPWAEYIYNTSFHAALRDTPFKLVYGRDPPSIRAYDASELRVAAVA 1127
Query: 1287 ESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLS 1346
+S+++R L ++ L++AQ K D+ REV+FE AWV LR++ SL +
Sbjct: 1128 QSIEERDAFLADVRLRLEQAQQYAKRYYDQKHREVSFEVGAWVWLRVRHRVPASLPEAVK 1187
Query: 1347 NKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
KL RFYGP+RV I VAY L LPP ++LH+VFHV LL
Sbjct: 1188 GKLRPRFYGPYRVVAVINEVAYRLALPPGTRLHDVFHVGLL 1228
Score = 65.5 bits (158), Expect = 1e-08
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 52 PKSLKLQLTSFDG-SKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNN 110
P+ KL FDG PL +L EQFF+ +TP ++ L S+++ A WY + +
Sbjct: 106 PRYHKLDFPKFDGRGDPLPFLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLERD 165
Query: 111 YQLSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRF 155
++ W F+ L +R+GP + EL ++T+TV +Y RF
Sbjct: 166 HEPPSWHRFSELLNMRYGPPLHSTPLGELAACRRTTTVDDYAERF 210
>ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|15451608|gb|AAK98732.1|
Putative retroelement [Oryza sativa]
Length = 1923
Score = 770 bits (1987), Expect = 0.0
Identities = 399/865 (46%), Positives = 542/865 (62%), Gaps = 11/865 (1%)
Query: 528 LLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEG 587
+L + VF P +PP R DH I L+ PVN+RPYR+ + K+ + +T+MLQ G
Sbjct: 43 VLDRFQEVFQEPTEMPPVRNCDHKIPLMEGASPVNLRPYRHTPALKDEIERQVTEMLQSG 102
Query: 588 IVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFS 647
++ S S +SSP LL+KKKDGTWR C+D++ LN+ITIK ++P+P IDELLDEL GA +FS
Sbjct: 103 VIQNSNSAFSSPALLVKKKDGTWRLCIDYKHLNAITIKGKYPLPVIDELLDELSGAKYFS 162
Query: 648 KLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRR 707
KLDLR+G+HQIRL + HKTAF+T GHYE+ VM FGLT AP+TFQ AMND L LR+
Sbjct: 163 KLDLRAGYHQIRLQPGEEHKTAFQTHSGHYEYRVMSFGLTGAPATFQKAMNDTLATVLRK 222
Query: 708 FVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANG 767
F LVFFDDIL+YSP L +H+ HL++VL++L + ++ KLSKC F ++YLGHII +G
Sbjct: 223 FTLVFFDDILIYSPDLPSHIQHLEQVLQLLQAQQWKVKLSKCSFAQQQLAYLGHIIGKDG 282
Query: 768 VGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHT 827
V DPSK+ ++ W +P+++ LRGFLGL G+YR+F++N+ LT LLK K
Sbjct: 283 VTTDPSKIADVLHWKIPQSVKQLRGFLGLAGYYRKFVRNFGTINKPLTQLLK-----KGV 337
Query: 828 LLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFS 887
W++ ++F LK ++SAPVL LPDFS TF +ETDA +GAVLSQ HPI+F S
Sbjct: 338 PFKWTAQMDEAFNALKQALVSAPVLALPDFSKTFTVETDACDMGIGAVLSQDRHPIAFVS 397
Query: 888 KKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIK 947
K L + + STY +E A+ AV +WR YL +F I TD +L H+ Q TP Q K
Sbjct: 398 KALGPKTRGLSTYEKEYLAILLAVDQWRSYLQHDEFVILTDHHNLMHITDQRLHTPLQHK 457
Query: 948 WATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTPEG 1007
TKL+G Y++ Y+ G+ N ADALSR L A+S P +T + + Y+T E
Sbjct: 458 AFTKLMGLQYKVCYRRGTSNAAADALSRRDEETNDQLWAVSECQPLWLTAVVKGYETDEQ 517
Query: 1008 IQLIVDKSTL-----PHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKP 1062
Q ++ + L HF + VL +K +++ + + +++ HASP GHSG
Sbjct: 518 AQQLLTELALHPTAREHFHLVQGVLRYKGKIWIGHNLSLQQQLVTALHASPIGGHSGFPV 577
Query: 1063 TLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFI 1122
T R+ A F WP ++ + ++K C CQ K AK GLLQPLP P W+ +S+DFI
Sbjct: 578 TYQRVKALFAWPQMKKMIQQWVKNCTICQQAKPDLAKYPGLLQPLPIPEGAWQVVSLDFI 637
Query: 1123 TGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRD 1182
GLP S + V+VD+ S+YAHFV L F+A +A + I +LHG+P+ ++SDRD
Sbjct: 638 EGLPKSERYNCILVVVDKFSRYAHFVPLSHPFSALDVAVSYMKNIYKLHGMPKVLISDRD 697
Query: 1183 KIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLH 1242
KIF S W LF G L S+AYHP++DGQT+ VN+ LE +LRCF P W +LH
Sbjct: 698 KIFTSKLWEFLFLKSGIALHLSSAYHPQSDGQTKRVNQCLEMFLRCFTNAAPFKWVTWLH 757
Query: 1243 LAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKAN 1302
LA WYNT FHSA TPF+ +YG P L + AI L L +R + E L+ +
Sbjct: 758 LAGYWYNTCFHSALNKTPFEVLYGHNPLQ-LGVTMETCAIPDLAVWLHERKLMAELLQQH 816
Query: 1303 LQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRR 1362
L R Q +MK DK+R F WV L+LQPY Q+S+A R +KLA +FYGPF++ R
Sbjct: 817 LHRVQQKMKFHADKNRSFREFAVGDWVFLKLQPYVQKSVASRACHKLAFKFYGPFQILAR 876
Query: 1363 IGSVAYELDLPPTSKLHNVFHVSLL 1387
+G+VAY+L LP S +H VFHVS L
Sbjct: 877 VGTVAYKLQLPDDSTIHPVFHVSQL 901
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,481,116,714
Number of Sequences: 2540612
Number of extensions: 110827313
Number of successful extensions: 427592
Number of sequences better than 10.0: 36663
Number of HSP's better than 10.0 without gapping: 2939
Number of HSP's successfully gapped in prelim test: 33726
Number of HSP's that attempted gapping in prelim test: 345707
Number of HSP's gapped (non-prelim): 44014
length of query: 1387
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1246
effective length of database: 505,134,102
effective search space: 629397091092
effective search space used: 629397091092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0007.12