BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0004b.4
(929 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 726 0.0
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 724 0.0
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 721 0.0
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul... 719 0.0
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 719 0.0
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul... 718 0.0
gb|AAP52375.1| putative retroelement [Oryza sativa (japonica cul... 717 0.0
ref|XP_471161.1| OSJNBb0080H08.12 [Oryza sativa (japonica cultiv... 717 0.0
gb|AAM01161.2| Putative retroelement [Oryza sativa (japonica cul... 717 0.0
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 716 0.0
gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cult... 716 0.0
gb|AAV31295.1| putative polyprotein [Oryza sativa (japonica cult... 715 0.0
gb|AAT85240.1| putative polyprotein [Oryza sativa (japonica cult... 715 0.0
gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (j... 714 0.0
gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cult... 714 0.0
emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar... 714 0.0
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 714 0.0
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 713 0.0
emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa (japonica cultivar... 713 0.0
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult... 712 0.0
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 726 bits (1874), Expect = 0.0
Identities = 424/915 (46%), Positives = 552/915 (59%), Gaps = 51/915 (5%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF R PP FS
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQGNN------QNQNPPPPPQNKLADFLRVRPPTFSST 77
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A+ + ITW+
Sbjct: 78 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAEGEPITWQ 136
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V EY LA H+ + DE
Sbjct: 137 EFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLA-HYAPEDVRTDEERQ- 194
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNA---RGKFQGLNKPYQGSGGPA 258
E+F+EGL EL A+ +Q LV+K E N + + K QGS
Sbjct: 195 EKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRP 254
Query: 259 RTNQGRGDKGR-HFQKKPYVRPQGR--GTTSGSFYPTGGNAIA--LRTPSGNREDVTCFR 313
R G D VRPQ + +G+ N +A TP+ N + V +
Sbjct: 255 RLITGPQDPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVARPAATPAQN-QPVRKEQ 313
Query: 314 CNKKGHYANHCSESLAACWNCNKPGHTAAECRIPK-VEAAANVAGARRPTAGGRVYSISG 372
+K G C+NC PGH A +C P+ V+ A + P RV ++
Sbjct: 314 GSKPG-----------VCFNCGDPGHYADKCPKPRRVKNAPAPNNSNAPAPKARVNHVAA 362
Query: 373 TEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPAS 432
EA+ ++ T + LFDSGATHSF+ + A+ +EV L L V+TP +
Sbjct: 363 AEAQNAPDVVLGTFPVNSIPASVLFDSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGN 422
Query: 433 KSLVTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVV 488
+ T CP ++ + F ++LI L K LDVI+GMDWLS H ++DCAN KV
Sbjct: 423 QVFSTQY----CPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANCKVT 478
Query: 489 IFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPG 548
+ G S+F G + + ++ + I +VQD+ DVFPED+PG
Sbjct: 479 LTSSNGETV---SFFVSSPKYHGVILNQVA----------LQEIPIVQDYPDVFPEDLPG 525
Query: 549 IPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVL 608
+PP RD+EF ID+VPGT PI PYRMA EL E+K Q+EDL +KG+IRPS S WGAPV+
Sbjct: 526 MPPKRDIEFRIDLVPGTNPIDKRPYRMAANELAEVKRQVEDLLQKGYIRPSTSLWGAPVI 585
Query: 609 LVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVK 668
V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKIDLRSGYHQ+R++
Sbjct: 586 FVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIR 645
Query: 669 DEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSR 728
+EDI KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYS+
Sbjct: 646 EEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSK 705
Query: 729 NREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAW 788
+EEHEEHLR L+ LR+ LYA ++KCEFWL EVKFLGHVIS G+AVDPS VE+VL+W
Sbjct: 706 TKEEHEEHLRLALEKLREHQLYAKSSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSW 765
Query: 789 ERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRL 848
++PKTVT+IRSF+GLAGYYRRFIE F+KIA P+T+L +K + WTEDCE+SFQ++KKRL
Sbjct: 766 KQPKTVTEIRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCERSFQELKKRL 825
Query: 849 TTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAA 908
TAPVL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE NYPTHDLELAA
Sbjct: 826 VTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAA 885
Query: 909 VVFALKIWRHYLYGS 923
VV ALKIWRHYL+G+
Sbjct: 886 VVHALKIWRHYLFGN 900
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 724 bits (1868), Expect = 0.0
Identities = 412/926 (44%), Positives = 551/926 (59%), Gaps = 61/926 (6%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF R PP FS
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQANN------QNQNPPPPPQNKLADFLRVRPPTFSST 77
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A + ITW+
Sbjct: 78 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAGGEPITWQ 136
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V EY LA++ +E
Sbjct: 137 EFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ-- 194
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTN 261
E+F+EGL EL A+ +Q LV+K E K+ + + + R
Sbjct: 195 EKFLEGLNDELSYALMATDFRDFQQLVDKAIRQE------DKYNRIEQKKR------RAA 242
Query: 262 QGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTP------------SGNREDV 309
Q + +G + + + PQ YP GG++ R + NR V
Sbjct: 243 QFKAQQGSNQRPRLITGPQAPS------YPQGGSSSVARPQRQFYNNNTSNRGNDNRNMV 296
Query: 310 TCFRCN--KKGHYANHCSESLAACWNCNKPGHTAAECRIPK-VEAAANVAGARRPTAGGR 366
C + C+NC PGH A +C P+ V+ A P R
Sbjct: 297 ACPAATPVQNQPVRKEQGSKPVICFNCGDPGHYADKCPKPRRVKNAPVPNNPNVPAPKAR 356
Query: 367 VYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELT 426
V ++ EA+ ++ T + LFDSGATHSF+ + A++ +EV L L
Sbjct: 357 VNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLL 416
Query: 427 VSTPASKSLVTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDC 483
V+TP ++ T CP + ++ + F ++LI L K LDVI+GMDWLS H ++DC
Sbjct: 417 VNTPGNQVFSTQY----CPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDC 472
Query: 484 ANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFP 543
AN+ V ++ S+F+ G + + ++ + I +VQD+ DVFP
Sbjct: 473 ANRKVTLTNSNGETV--SFFASSPKSHGVVLNQVA----------LQEIPIVQDYPDVFP 520
Query: 544 EDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPW 603
ED+PG+PP RD+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPW
Sbjct: 521 EDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPW 580
Query: 604 GAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYH 663
GAPV+ V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKIDL SGYH
Sbjct: 581 GAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLHSGYH 640
Query: 664 QIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDI 723
Q+R+++EDI KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDI
Sbjct: 641 QLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDI 700
Query: 724 LIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVE 783
LIYS+ +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE
Sbjct: 701 LIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVE 760
Query: 784 AVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQD 843
+VL+W++PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K + WTEDCE+SFQ+
Sbjct: 761 SVLSWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCERSFQE 820
Query: 844 MKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHD 903
+KKRL TAPVL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE NYPTHD
Sbjct: 821 LKKRLVTAPVLILPDTRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPTHD 880
Query: 904 LELAAVVFALKIWRHYLYGSTFTVFS 929
LELAAVV ALKIWRHYL+G+ +++
Sbjct: 881 LELAAVVHALKIWRHYLFGNRTEIYT 906
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 721 bits (1860), Expect = 0.0
Identities = 403/874 (46%), Positives = 531/874 (60%), Gaps = 32/874 (3%)
Query: 69 DFKRQDPPKFSGGFDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGAR 128
+F R PP F+ +P EA+ WL+ +EK T +R KV + L G A WW +
Sbjct: 50 EFMRTKPPTFATADEPMEAEDWLRIIEKKLTLVRVREADKVIFAVNQLEGPAGDWWDTYK 109
Query: 129 AMMEADHQAITWECFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHF 188
E TWE F AF + + P + K+ +F RLRQG TV EY K LA
Sbjct: 110 EAREDGAGEPTWEEFTVAFRENFVPAAVMRMKKNEFRRLRQGNTTVQEYLNKFTQLA--- 166
Query: 189 RYFRGQI-DEGYMCERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGL 247
RY G + DE ++FIEGL EL+ + +Q L+ K + ++N + +
Sbjct: 167 RYAIGDLADEEEKIDKFIEGLNDELRGPMIGQDHESFQSLINK---VVRLENDQRTVEHN 223
Query: 248 NKPYQGSGGPARTNQGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPS---- 303
K +T R KP V R +F A+ RTP+
Sbjct: 224 RKRRLAMSRLPQTVPQRLKGATPSGWKPPVMVTNRPAALSNF--NRPVALQNRTPTPTLA 281
Query: 304 --GNREDVTCFRCNKKGHYANHCSESLAACWNCNKPGHTAAECRIPKV-EAAANVAGARR 360
G +++V CF C + GHYAN+C T P V + R
Sbjct: 282 APGAKKNVDCFNCGEYGHYANNCPHPRKTPIRTGANAMTVRGTTTPAVGRGLFKTPQSNR 341
Query: 361 PTAG---GRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLE 417
T G G+V + EA+ED G++ I + LFDSGA+HSFI + + + L
Sbjct: 342 TTTGFGRGQVNHVRAEEAQEDQGVLMGMFSINSTPVKVLFDSGASHSFISLKASQKHNLT 401
Query: 418 VSKLPFELTVSTPASKSLVTNTACLECPWMYLDKKFVANLICLPLKGLDVIIGMDWLSHH 477
+ L + V +P + V++ AC++ P D F +NL+ L + LDVI+GMDWL+ H
Sbjct: 402 LVGLRKPMIVHSPGGEITVSH-ACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKH 460
Query: 478 HVLLDCANKVVIF--PDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVV 535
++DC + V P +L+ R G + +++ + G+ VV
Sbjct: 461 RGVIDCRRREVTLTTPWGSDMRATMDQDPRLTERAGGIFTMLP----------LKGMPVV 510
Query: 536 QDFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGF 595
Q F DVFPED+PG+PP RD+EF ID++PGT PIS PYRM EL ELK Q+ +L +KGF
Sbjct: 511 QRFPDVFPEDLPGMPPDRDVEFIIDLIPGTAPISKRPYRMPVNELEELKKQIRELQQKGF 570
Query: 596 IRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSK 655
+RPS SPWGAPVL KKKDG R+CVDYR LN+VTIKN+YPLPRIDDL DQLKGA +FSK
Sbjct: 571 VRPSSSPWGAPVLFDKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSK 630
Query: 656 IDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRF 715
IDLRSGYHQ++++ EDI KTAF TRYG YE+ VM FG+TNAPA FM+ MN++F +LD+F
Sbjct: 631 IDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKF 690
Query: 716 VVVFIDDILIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGI 775
VVVFIDDILIYS++ EEH EHLR VLQ LR LYA +KCEFWL+EV FLGHVIS G+
Sbjct: 691 VVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGV 750
Query: 776 AVDPSKVEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTE 835
AVDP+KVEAV W+ PK+VT+IRSF+GLAGYYRRFIEGF+KIA P+T+L +K + F W+E
Sbjct: 751 AVDPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKIARPMTQLLKKEKKFVWSE 810
Query: 836 DCEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIH 895
C++SF+ +K++LT+AP+L LP ++ + +YCDAS QGLG VLMQ K VAY+SRQL+ H
Sbjct: 811 QCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDEKVVAYASRQLRPH 870
Query: 896 ERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFS 929
E NYPTHDLEL AVV ALKIWRHYL G+ +++
Sbjct: 871 EENYPTHDLELVAVVHALKIWRHYLIGNHCDIYT 904
>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531590|ref|NP_920097.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 719 bits (1855), Expect = 0.0
Identities = 406/892 (45%), Positives = 541/892 (60%), Gaps = 64/892 (7%)
Query: 58 ELAAAQTRGLNDFKRQDPPKFSGGFDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLT 117
++ A QT+ +N PP FS +P EA WL +EK ++ T + KV + ++ L
Sbjct: 27 QILAQQTQLINL-----PPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLH 81
Query: 118 GEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEY 177
G A WW R A + ITW+ F AF + P A K+ +F L QG +V EY
Sbjct: 82 GPAAEWWDHFR-QGRAGGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEY 140
Query: 178 AAKLESLAKHFRYFRGQIDEGYMCERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAI 237
LA++ +E E+F+EGL EL + +Q LV+K E
Sbjct: 141 LHDFNRLARYAPEDVHTDEERQ--EKFLEGLNDELSYTLMSTEFRDFQQLVDKAIRQE-- 196
Query: 238 DNARGKFQGLNKPYQGSGGPARTNQGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAI 297
K+ + + + R Q + +G + + + PQ YP GG++
Sbjct: 197 ----DKYNRMEQKKR------RAAQFKAQQGSNQRPRLIPGPQVPS------YPQGGSSS 240
Query: 298 ALRTPSGNREDVTCFRCNKKGHYA--------------NHCSESLAACWNCNKPGHTAAE 343
+R + T R N+ + C+NC PGH A +
Sbjct: 241 VVRPQRQFYNNNTGNRGNENRNVVARPAATPVQNQPVRKEQGSKPVICFNCGDPGHYADK 300
Query: 344 CRIPKVEAAANVA---GARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSG 400
C PK NV + P RV ++ EA+ ++ T + LFDSG
Sbjct: 301 C--PKPRHVKNVPVPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSG 358
Query: 401 ATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNTACLECPWMYLDKK---FVANL 457
ATHSF+ + A + +EV L L V+TP ++ T CP + ++ + F ++L
Sbjct: 359 ATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVFSTRY----CPSVTIEIEGVPFPSSL 414
Query: 458 ICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLM 517
I L K LDVI+GMDWLS H ++DCAN+ V ++ S+F+ G + + +
Sbjct: 415 ILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETV--SFFASSPKSHGVVLNQV 472
Query: 518 STTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAP 577
+ + I +VQD+ DVFPED+PG+PP RD+EF ID+VPGT PI PYRMA
Sbjct: 473 A----------LQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAA 522
Query: 578 AELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPL 637
EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD R+CVDYR LN+VTIKN+YPL
Sbjct: 523 NELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPL 582
Query: 638 PRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAP 697
PRIDDL DQLKGA +FSKIDLRSGYHQ+R+++EDI KTAF TRYG +E VM FG+TNAP
Sbjct: 583 PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAP 642
Query: 698 AVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEHEEHLRQVLQVLRDKVLYANATKCE 757
A FM+ MN++F +LD+FVVVFIDDILIYS+ +EEH+EHLR L+ LR+ LYA +KCE
Sbjct: 643 AFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHKEHLRLALEKLREHQLYAKFSKCE 702
Query: 758 FWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKI 817
FWL EVKFLGHVIS G+AVDPS VE+VL+W++PKTV+++RSF+GLAGYYRRFIE F+KI
Sbjct: 703 FWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYYRRFIENFSKI 762
Query: 818 AGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCV 877
A P+T+L +K + WTEDCEQSFQ++KKRL TAPVL LP ++ ++VYCDAS GLGCV
Sbjct: 763 ARPMTRLLQKEVKYKWTEDCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCV 822
Query: 878 LMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFS 929
LMQ K VAY+SRQL+ HE NYPTHDLELAAVV ALKIWRHYLYG+ V++
Sbjct: 823 LMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLYGNRTEVYT 874
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 719 bits (1855), Expect = 0.0
Identities = 415/926 (44%), Positives = 552/926 (58%), Gaps = 61/926 (6%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF R PP FS
Sbjct: 284 TLAQILAQQTQLINLLVQQAQNQQANN------QNQNPPPPPQNKLADFLRVRPPTFSST 337
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A+ + ITW+
Sbjct: 338 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAEGEPITWQ 396
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V EY LA++ +E
Sbjct: 397 EFTAAFRKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ-- 454
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTN 261
E+F+EGL EL A+ +Q LV+K E K+ + + + R
Sbjct: 455 EKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQE------DKYNRMEQKKR------RAA 502
Query: 262 QGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHYA 321
Q + +G + + + PQ YP GG++ +R + T R N +
Sbjct: 503 QFKAQQGSNQRPRLVTGPQVPS------YPQGGSSSVVRPQRQFYNNNTSNRGNDNRNVV 556
Query: 322 NHCSESLAA--------------CWNCNKPGHTAAECRIPK-VEAAANVAGARRPTAGGR 366
+ + A C+NC PGH A +C P+ V+ A + P R
Sbjct: 557 ARPAATSAQNQPVRKEQGSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKAR 616
Query: 367 VYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELT 426
V ++ EA+ ++ T + LFDSGATHSF+ + + +EV L L
Sbjct: 617 VNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFTSNHGMEVISLERPLL 676
Query: 427 VSTPASKSLVTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDC 483
V+TP ++ T CP ++ + F ++LI L K LDVI+GMDWLS H ++DC
Sbjct: 677 VNTPGNQVFSTQY----CPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSCHRGVIDC 732
Query: 484 ANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFP 543
AN+ V + S+F +SS S V+ + + I +VQD+ DVFP
Sbjct: 733 ANRKVTLTSSNGETV--SFF---------MSSPKSHGVI-LNQVALQEIPIVQDYPDVFP 780
Query: 544 EDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPW 603
ED+PG+PP R++EF ID+VPGT PI PYRMA EL E+K Q+EDL +KG+IRPS SPW
Sbjct: 781 EDLPGMPPKREIEFRIDLVPGTNPIHKRPYRMAANELVEVKRQVEDLLQKGYIRPSTSPW 840
Query: 604 GAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYH 663
GAPV+ V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKIDLRSGYH
Sbjct: 841 GAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYH 900
Query: 664 QIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDI 723
Q+R+++EDI KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+ VVVFIDDI
Sbjct: 901 QLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKLVVVFIDDI 960
Query: 724 LIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVE 783
LIYS+ +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE
Sbjct: 961 LIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVE 1020
Query: 784 AVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQD 843
+VL+W++PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K + WTEDCEQSFQ+
Sbjct: 1021 SVLSWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCEQSFQE 1080
Query: 844 MKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHD 903
+KKRL TA VL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE NYPTHD
Sbjct: 1081 LKKRLATALVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPTHD 1140
Query: 904 LELAAVVFALKIWRHYLYGSTFTVFS 929
LELAAVV ALKIWRHYL+G+ V++
Sbjct: 1141 LELAAVVHALKIWRHYLFGNRTEVYT 1166
>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531578|ref|NP_920091.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1461
Score = 718 bits (1854), Expect = 0.0
Identities = 413/922 (44%), Positives = 542/922 (57%), Gaps = 73/922 (7%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF R PP FS
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQGNN------QNQNPPPPPQNKLADFLRVRPPTFSST 77
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A + ITW+
Sbjct: 78 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAGGEPITWQ 136
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V +Y LA + +
Sbjct: 137 EFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTKYLHDFNRLACYAP--EDVCTDEERQ 194
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPA--- 258
E+F+EGL EL A+ +Q LV+K E + G P GG +
Sbjct: 195 EKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDNNQRPRLVTGPQVPSYPQGGSSSVV 254
Query: 259 -------RTNQG-RGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNREDVT 310
N G RG+ R+ +P P +R G++ V
Sbjct: 255 RPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQ--------------PVRREQGSK-PVI 299
Query: 311 CFRCNKKGHYANHCSESLAACWNCNKPGHTAAECRIPKVEAAANVAGARRPTAGGRVYSI 370
CF C GHYA+ C KP R+ A N P RV +
Sbjct: 300 CFNCGDPGHYAD----------KCPKPR------RVKNAPAPNNF---NVPAPKARVNHV 340
Query: 371 SGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTP 430
+ EA+ ++ T + LFDSGATHSF+ + A + +EV L L V+TP
Sbjct: 341 AAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTP 400
Query: 431 ASKSLVTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCANKV 487
+++ T CP + ++ + F ++LI L K LDVI+GMDWLS H ++DCAN+
Sbjct: 401 GNQAFSTR----YCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRK 456
Query: 488 VIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVP 547
V + E ++ + S L+ + + I +VQD+ DVFPED+P
Sbjct: 457 VTLTSSN-GETVSFFASSPKSHGEVLNQV-----------ALQEIPIVQDYPDVFPEDLP 504
Query: 548 GIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPV 607
G+PP RD+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAPV
Sbjct: 505 GMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPV 564
Query: 608 LLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRV 667
+ V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKIDLRSGYHQ+R+
Sbjct: 565 IFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRI 624
Query: 668 KDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYS 727
++EDI KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYS
Sbjct: 625 REEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYS 684
Query: 728 RNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLA 787
+ +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+VL+
Sbjct: 685 KTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLS 744
Query: 788 WERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKR 847
W++PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+ + WTEDCEQSFQ++KKR
Sbjct: 745 WKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQKDVKYKWTEDCEQSFQELKKR 804
Query: 848 LTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELA 907
L TAPVL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL HE NYPTHDLELA
Sbjct: 805 LVTAPVLILPDSRKGFQVYCDASRHGLGCVLMQEGKVVAYASRQLCPHENNYPTHDLELA 864
Query: 908 AVVFALKIWRHYLYGSTFTVFS 929
AVV ALKIWRHYL+G+ +++
Sbjct: 865 AVVHALKIWRHYLFGNRTEIYT 886
>gb|AAP52375.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531572|ref|NP_920088.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1466
Score = 717 bits (1851), Expect = 0.0
Identities = 416/933 (44%), Positives = 552/933 (58%), Gaps = 75/933 (8%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF R PP FS
Sbjct: 24 TLAQILAQQTQLINLLVQQAQNQQGNN------QNQNPPPPPQNKLADFLRVRPPTFSST 77
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A + ITW+
Sbjct: 78 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAGGEPITWQ 136
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V EY LA++ +E
Sbjct: 137 EFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ-- 194
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKT-------KGIEAIDNARGKF---QGLNKPY 251
E+F+EGL +L A+ +Q LV+K +E +F QG N+
Sbjct: 195 EKFLEGLNDKLSYALMSTDFQDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRP 254
Query: 252 QGSGGPARTNQGRGDKGRHFQKKPYVRPQGR--GTTSGSFYPTGGNAIA--LRTPSGNR- 306
+ GP + +G VRPQ + +G+ N +A TP N+
Sbjct: 255 RLVTGPQVPSYPQGG------SSSVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQP 308
Query: 307 -------EDVTCFRCNKKGHYANHCSESLAACWNCNKPGHTAAECRIPKVEAAANVAGAR 359
+ V CF C GHYA+ C KP R+ A N
Sbjct: 309 VRREQGSKPVICFNCGDPGHYAD----------KCPKPR------RVKNAPAPNNF---N 349
Query: 360 RPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVS 419
P RV ++ EA+ ++ T + LFDSGATHSF+ + A + +EV
Sbjct: 350 VPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLCKSFAIKHGMEVV 409
Query: 420 KLPFELTVSTPASKSLVTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSH 476
L L V+TP +++ T CP + ++ + F ++LI L K LDVI+GMDWLS
Sbjct: 410 SLGRPLLVNTPGNQAFSTR----YCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSR 465
Query: 477 HHVLLDCANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQ 536
H ++DCAN+ V + E ++ + S L+ + + I +VQ
Sbjct: 466 HRGVIDCANRKVTLTSSN-GETVSFFASSPKSHGEVLNQV-----------ALQEIPIVQ 513
Query: 537 DFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFI 596
D+ DVFPED+PG+PP RD+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+I
Sbjct: 514 DYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLIQKGYI 573
Query: 597 RPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKI 656
RPS SPWGAPV+ V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKI
Sbjct: 574 RPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKI 633
Query: 657 DLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFV 716
DLRSGYHQ+R+++EDI KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FV
Sbjct: 634 DLRSGYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFV 693
Query: 717 VVFIDDILIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIA 776
VVFIDDILIYS+ +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+A
Sbjct: 694 VVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVA 753
Query: 777 VDPSKVEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTED 836
VDPS VE+VL+W++PKTV++IRSF+GLAGYYRRF+E F+KIA P+T+L +K+ + WTED
Sbjct: 754 VDPSNVESVLSWKQPKTVSEIRSFLGLAGYYRRFVENFSKIARPMTRLLQKDVKYKWTED 813
Query: 837 CEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHE 896
CEQSFQ++KK L TAPVL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE
Sbjct: 814 CEQSFQELKKMLVTAPVLILPDSRKGFQVYCDASRHGLGCVLMQEGKVVAYASRQLRPHE 873
Query: 897 RNYPTHDLELAAVVFALKIWRHYLYGSTFTVFS 929
NYPTHDLELAAVV ALKIWRHYL+G+ +++
Sbjct: 874 NNYPTHDLELAAVVHALKIWRHYLFGNRTEIYT 906
>ref|XP_471161.1| OSJNBb0080H08.12 [Oryza sativa (japonica cultivar-group)]
gi|38344420|emb|CAE02386.2| OSJNBb0080H08.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1666
Score = 717 bits (1851), Expect = 0.0
Identities = 416/913 (45%), Positives = 552/913 (59%), Gaps = 56/913 (6%)
Query: 35 TAALVAAQ-----NQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
T A V AQ N + + Q + A Q + L +F R PP FS +P EA
Sbjct: 278 TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEASD 336
Query: 90 WLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
WL +EK L+ T + KV + ++ L G A WW R + + ITW F AF
Sbjct: 337 WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 395
Query: 150 KYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMCERFIEGLC 209
+ P + K+ +F L QG +V EY + LA++ +E E+F+ GL
Sbjct: 396 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLGGLN 453
Query: 210 YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTNQGRGDKGR 269
EL + +Q LV+K I D Q + Q +T QG K R
Sbjct: 454 DELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKPR 506
Query: 270 HFQKKPYVRPQGRGTT-----SGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHYANHC 324
P PQG ++ F GN I + P V ++
Sbjct: 507 -LTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNKAPRPVAAPVQQQPAKREQ------ 559
Query: 325 SESLAACWNCNKPGHTAAECRIPK-VEAAANVAGARRPTAGGRVYSISGTEAEEDDGLIR 383
C+NC PGH A +C P+ V+ + + P + RV ++ EA++ +I
Sbjct: 560 GSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPVSKARVNHVAAAEAQDAPDVIL 619
Query: 384 STCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNTACLE 443
T + LFDSGATHSF+ ++ A +EV L L VSTP++++L +
Sbjct: 620 GTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRS--- 676
Query: 444 CPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAGLAEFLN 500
P + ++ K F+ANLI L K LDVI+GMDWL+ H ++DCAN+ V LN
Sbjct: 677 -PSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVT---------LN 726
Query: 501 SYFSKL----SLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPVRDME 556
SY ++ +L +L S ++ +E I +V+++ DVFP+D+PG+PP RD+E
Sbjct: 727 SYDGRVVTVHALSSESLRSRLNQITLEE-------IPIVREYSDVFPDDLPGMPPKRDIE 779
Query: 557 FTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGR 616
F ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD
Sbjct: 780 FRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHT 839
Query: 617 SRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTA 676
R+CVDYR LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI KTA
Sbjct: 840 QRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTA 899
Query: 677 FRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEHEEH 736
F TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYSR +EEHEEH
Sbjct: 900 FTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEH 959
Query: 737 LRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKTVTD 796
LR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+V W++PKTV++
Sbjct: 960 LRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSE 1019
Query: 797 IRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTL 856
IRSF+GLAGYYRRFIE F+KIA P+T+L +K+ + W+E+CEQSFQ++K RL +AP+L L
Sbjct: 1020 IRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPILIL 1079
Query: 857 PQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIW 916
P K+ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHD+ELAAVV ALKIW
Sbjct: 1080 PDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIW 1139
Query: 917 RHYLYGSTFTVFS 929
RHYL+G+ V++
Sbjct: 1140 RHYLFGTRTEVYT 1152
>gb|AAM01161.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1661
Score = 717 bits (1851), Expect = 0.0
Identities = 416/933 (44%), Positives = 552/933 (58%), Gaps = 75/933 (8%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF R PP FS
Sbjct: 336 TLAQILAQQTQLINLLVQQAQNQQGNN------QNQNPPPPPQNKLADFLRVRPPTFSST 389
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A + ITW+
Sbjct: 390 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAGGEPITWQ 448
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V EY LA++ +E
Sbjct: 449 EFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ-- 506
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKT-------KGIEAIDNARGKF---QGLNKPY 251
E+F+EGL +L A+ +Q LV+K +E +F QG N+
Sbjct: 507 EKFLEGLNDKLSYALMSTDFQDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRP 566
Query: 252 QGSGGPARTNQGRGDKGRHFQKKPYVRPQGR--GTTSGSFYPTGGNAIA--LRTPSGNR- 306
+ GP + +G VRPQ + +G+ N +A TP N+
Sbjct: 567 RLVTGPQVPSYPQGG------SSSVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQP 620
Query: 307 -------EDVTCFRCNKKGHYANHCSESLAACWNCNKPGHTAAECRIPKVEAAANVAGAR 359
+ V CF C GHYA+ C KP R+ A N
Sbjct: 621 VRREQGSKPVICFNCGDPGHYAD----------KCPKPR------RVKNAPAPNNF---N 661
Query: 360 RPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVS 419
P RV ++ EA+ ++ T + LFDSGATHSF+ + A + +EV
Sbjct: 662 VPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLCKSFAIKHGMEVV 721
Query: 420 KLPFELTVSTPASKSLVTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSH 476
L L V+TP +++ T CP + ++ + F ++LI L K LDVI+GMDWLS
Sbjct: 722 SLGRPLLVNTPGNQAFSTR----YCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSR 777
Query: 477 HHVLLDCANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQ 536
H ++DCAN+ V + E ++ + S L+ + + I +VQ
Sbjct: 778 HRGVIDCANRKVTLTSSN-GETVSFFASSPKSHGEVLNQV-----------ALQEIPIVQ 825
Query: 537 DFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFI 596
D+ DVFPED+PG+PP RD+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+I
Sbjct: 826 DYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLIQKGYI 885
Query: 597 RPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKI 656
RPS SPWGAPV+ V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKI
Sbjct: 886 RPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKI 945
Query: 657 DLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFV 716
DLRSGYHQ+R+++EDI KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FV
Sbjct: 946 DLRSGYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFV 1005
Query: 717 VVFIDDILIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIA 776
VVFIDDILIYS+ +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+A
Sbjct: 1006 VVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVA 1065
Query: 777 VDPSKVEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTED 836
VDPS VE+VL+W++PKTV++IRSF+GLAGYYRRF+E F+KIA P+T+L +K+ + WTED
Sbjct: 1066 VDPSNVESVLSWKQPKTVSEIRSFLGLAGYYRRFVENFSKIARPMTRLLQKDVKYKWTED 1125
Query: 837 CEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHE 896
CEQSFQ++KK L TAPVL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE
Sbjct: 1126 CEQSFQELKKMLVTAPVLILPDSRKGFQVYCDASRHGLGCVLMQEGKVVAYASRQLRPHE 1185
Query: 897 RNYPTHDLELAAVVFALKIWRHYLYGSTFTVFS 929
NYPTHDLELAAVV ALKIWRHYL+G+ +++
Sbjct: 1186 NNYPTHDLELAAVVHALKIWRHYLFGNRTEIYT 1218
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 716 bits (1847), Expect = 0.0
Identities = 397/881 (45%), Positives = 533/881 (60%), Gaps = 46/881 (5%)
Query: 69 DFKRQDPPKFSGGFDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGAR 128
+F R PP F+ +P +A+ WL+ +EK T +R KV + L G A WW +
Sbjct: 50 EFMRTKPPTFATAEEPMDAEDWLRIIEKKLTLVRVREADKVIFAANQLEGPAGDWWDTYK 109
Query: 129 AMMEADHQAITWECFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHF 188
E D WE F AF D + P + K+ +F +LRQG TV EY + LA++
Sbjct: 110 EAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRKLRQGNTTVQEYLNRFTQLARYA 169
Query: 189 RYFRGQIDEGYMCERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIE----AIDNARGKF 244
R DE ++FIEGL EL+ + + +Q L+ K +E +++ R +
Sbjct: 170 T--RDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLENDRKVVEHNRKRR 227
Query: 245 QGLNKPYQGSGGPARTNQGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPS- 303
+N+P Q + P R R P V R S +F+ TP+
Sbjct: 228 LAMNRPPQTA--PQRPKGTTPSAWR-----PTVVTTSRPAASSNFHRPVTIQNRAPTPNQ 280
Query: 304 ---GNREDVTCFRCNKKGHYANHCSE----------SLAACWNCNKPGHTAAECRIPKVE 350
G+ +CF C + GH+AN C + A P R P+
Sbjct: 281 AATGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTGANATAIHGTATPAAGRGLFRTPQTN 340
Query: 351 AAANVAGARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIAC 410
A G G+V + EA+ED G++ + + LFDSGA+HSFI +
Sbjct: 341 RTATGFGR------GQVNHVRAEEAQEDQGVLMGMFSLNSTPVKVLFDSGASHSFISLKA 394
Query: 411 AARLKLEVSKLPFELTVSTPASKSLVTNTACLECPWMYLDKKFVANLICLPLKGLDVIIG 470
+ + L KL + V +P + + +TAC++ P D F +NL+ L + LDVI+G
Sbjct: 395 SQQHNLTRVKLRQPMLVHSPGGE-IAVDTACIDVPIRLRDVVFPSNLMVLIPQTLDVILG 453
Query: 471 MDWLSHHHVLLDCANKVVIF--PDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENG 528
MDWL+ H ++DC + V P +L+ R G + +++
Sbjct: 454 MDWLAKHRGVIDCRRREVTLTTPWGSDMRATMDQDPRLTERAGGIFTMLP---------- 503
Query: 529 VHGIAVVQDFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLE 588
+ G+ +VQ F DVFPED+PG+PP RD+EF ID++PGT PIS PYRM EL ELK Q+
Sbjct: 504 LKGMPIVQRFPDVFPEDLPGMPPDRDIEFIIDLIPGTAPISKRPYRMPVNELEELKKQIR 563
Query: 589 DLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLK 648
+L +KGF+RPS SPWGA VL VKKKDG R+CVDYR LN+VTIKN+YPLPRID+L DQLK
Sbjct: 564 ELQEKGFVRPSSSPWGAQVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDNLFDQLK 623
Query: 649 GAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIF 708
GA +FSKIDLRSGYHQ++++ EDI KTAF TRYG YE+ VM FG+TNAPA FM+ MN++F
Sbjct: 624 GAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVF 683
Query: 709 HPFLDRFVVVFIDDILIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGH 768
+LD+FVVVFIDDILIYS++ EEH EHLR VLQ LR LYA +KCEFWL+EV FLGH
Sbjct: 684 MEYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWLKEVAFLGH 743
Query: 769 VIS*EGIAVDPSKVEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKN 828
VIS G+AVDP+KVEAV W+ PK+VT+IRSF+GLA YYRRFIEGF+KIA P+T+L +K
Sbjct: 744 VISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLARYYRRFIEGFSKIARPMTQLLKKE 803
Query: 829 QPFAWTEDCEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYS 888
+ F W+E C++SF+ +K++LT+AP+L LP ++ + +YCDAS QGLG VLMQ K VAY+
Sbjct: 804 KKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDGKVVAYA 863
Query: 889 SRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFS 929
SRQL+ HE NYPTHDLELAAVV ALKIWRHYL G+ +++
Sbjct: 864 SRQLRPHEENYPTHDLELAAVVHALKIWRHYLIGNHCDIYT 904
>gb|AAV31378.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 716 bits (1847), Expect = 0.0
Identities = 420/918 (45%), Positives = 558/918 (60%), Gaps = 66/918 (7%)
Query: 35 TAALVAAQ-----NQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
T A V AQ N + + Q + A Q + L +F R PP FS +P EA
Sbjct: 24 TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEAGD 82
Query: 90 WLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
WL +EK L+ T + KV + ++ L G A WW R + + ITW F AF
Sbjct: 83 WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 141
Query: 150 KYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQI-DEGYMCERFIEGL 208
+ P + K+ +F L QG +V EY + LA RY + ++ E+F+EGL
Sbjct: 142 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLA---RYAPEDVRNDEERQEKFLEGL 198
Query: 209 CYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGK----------FQGLNKPYQGSGGPA 258
EL + + +Q L++K E N + QG N+ + + GP
Sbjct: 199 NDELSYPLMTGDYSDFQKLMDKAIRQEDKYNRMEQKKRRIAHFKAQQGSNQKPRLTLGPQ 258
Query: 259 RTNQGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGG---NAIALRTPSGNREDVTCFRCN 315
QG Q++ + G + + P A R P + V CF C
Sbjct: 259 SMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREPGS--KPVVCFNCG 316
Query: 316 KKGHYANHCSESLAACWNCNKPGHTAAECRIPKVEAAANVAGARRPTAGGRVYSISGTEA 375
GHYA+ C KP R+ V A +N + P + RV ++ EA
Sbjct: 317 DPGHYAD----------KCPKPR------RVKVVPAQSN---STAPASKARVNHVAAAEA 357
Query: 376 EEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSL 435
++ +I T + LFDSGATHSF+ ++ A +EV L L VSTP++++L
Sbjct: 358 QDAPDVILGTFSVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQAL 417
Query: 436 VTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFP 491
+ P + ++ + F+ANLI L K LDVI+GMDWL+ H ++DCAN KV +
Sbjct: 418 ----SLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLIS 473
Query: 492 DAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPP 551
+ G +++ S+ SLR S L T+ E I +V+++ DVFP+D+PG+PP
Sbjct: 474 NDGRVVTVHALSSE-SLR----SRLNQITLEE--------IPIVREYPDVFPDDLPGMPP 520
Query: 552 VRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVK 611
RD+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAPV+ V+
Sbjct: 521 KRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVE 580
Query: 612 KKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDED 671
KKD R+CVDYR LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+ED
Sbjct: 581 KKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEED 640
Query: 672 IQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNRE 731
I KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYSR +E
Sbjct: 641 IPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKE 700
Query: 732 EHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERP 791
EHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+V W++P
Sbjct: 701 EHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQP 760
Query: 792 KTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTA 851
KTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+ + W+E+CEQSFQ++K RL +A
Sbjct: 761 KTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLISA 820
Query: 852 PVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVF 911
P+L LP K+ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHDLELAAVV
Sbjct: 821 PILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVH 880
Query: 912 ALKIWRHYLYGSTFTVFS 929
ALKIWRHYL+G+ V++
Sbjct: 881 ALKIWRHYLFGTRTEVYT 898
>gb|AAV31295.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1374
Score = 715 bits (1846), Expect = 0.0
Identities = 412/928 (44%), Positives = 545/928 (58%), Gaps = 65/928 (7%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF PP FS
Sbjct: 28 TLAQILAQQTQLINLLVQQAQNQQGNN------QNQNPPPPPQNKLADFLHVRPPTFSST 81
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A+ + ITW+
Sbjct: 82 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAEGEPITWQ 140
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V EY LA++ +E
Sbjct: 141 EFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ-- 198
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTN 261
E+F+EGL EL A+ +Q LV+K E K+ + + + R
Sbjct: 199 EKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQE------DKYNRMEQKKR------RAA 246
Query: 262 QGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHYA 321
Q + +G + + + PQ YP GG++ +R + T R N +
Sbjct: 247 QFKAQQGSNQRPRLVTGPQAPS------YPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMV 300
Query: 322 NHCSESLA--------------ACWNCNKPGHTAAECRIPKVEAAANVAGARR---PTAG 364
H + + A C+NC GH A +C PK NV P
Sbjct: 301 VHPAATSAQNQPVRKEQGSKTVTCFNCGDLGHYADKC--PKPRRVKNVPAPNNSNVPAPK 358
Query: 365 GRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFE 424
RV ++ EA+ ++ T + LFDSGATHSF+ + A+ +EV L
Sbjct: 359 ARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRP 418
Query: 425 LTVSTPASKSLVTNTACLECPWMYL---DKKFVANLICLPLKGLDVIIGMDWLSHHHVLL 481
L V+TP +++ T CP + + F ++LI L K LDVI+GMDWLS H ++
Sbjct: 419 LLVNTPGNQAFSTQY----CPSATIGIEEDPFPSSLILLESKDLDVILGMDWLSRHRGVI 474
Query: 482 DCANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDV 541
DCAN+ V + S+F G V + + I +V+D+ DV
Sbjct: 475 DCANRKVTLTSSNGETV--SFFVSSPKSHG----------VTINQVALQDIPIVRDYSDV 522
Query: 542 FPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVS 601
FPED+PG+PP D+EF ID+VPGT PI PYRMA EL E+K Q+EDL +KG+IRPS S
Sbjct: 523 FPEDLPGMPPKIDIEFRIDLVPGTNPIHKRPYRMAANELAEVKRQVEDLLQKGYIRPSTS 582
Query: 602 PWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSG 661
PWGAPV+ V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKIDLRSG
Sbjct: 583 PWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSG 642
Query: 662 YHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFID 721
YHQ+R+++EDI KTAF TRYG +E M FG+TNA A FM+ MN++F +LD+FVVVFID
Sbjct: 643 YHQLRIREEDIPKTAFTTRYGLFECTDMSFGLTNASAFFMNLMNKVFMEYLDKFVVVFID 702
Query: 722 DILIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSK 781
DILIYS+ +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS
Sbjct: 703 DILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSN 762
Query: 782 VEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSF 841
VE+VL+W++PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K + WTEDCE+SF
Sbjct: 763 VESVLSWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCERSF 822
Query: 842 QDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPT 901
Q++KKRL TAPVL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE NYPT
Sbjct: 823 QELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRSHENNYPT 882
Query: 902 HDLELAAVVFALKIWRHYLYGSTFTVFS 929
HDLELAAVV ALKIWRHYL+G+ V++
Sbjct: 883 HDLELAAVVHALKIWRHYLFGNRTEVYT 910
>gb|AAT85240.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1472
Score = 715 bits (1846), Expect = 0.0
Identities = 412/928 (44%), Positives = 545/928 (58%), Gaps = 65/928 (7%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + AQNQ N + + L DF PP FS
Sbjct: 28 TLAQILAQQTQLINLLVQQAQNQQGNN------QNQNPPPPPQNKLADFLHVRPPTFSST 81
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK ++ T + KV + ++ L G A WW R A+ + ITW+
Sbjct: 82 TNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAEGEPITWQ 140
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P A K+ +F L QG +V EY LA++ +E
Sbjct: 141 EFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ-- 198
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTN 261
E+F+EGL EL A+ +Q LV+K E K+ + + + R
Sbjct: 199 EKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQE------DKYNRMEQKKR------RAA 246
Query: 262 QGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHYA 321
Q + +G + + + PQ YP GG++ +R + T R N +
Sbjct: 247 QFKAQQGSNQRPRLVTGPQAPS------YPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMV 300
Query: 322 NHCSESLA--------------ACWNCNKPGHTAAECRIPKVEAAANVAGARR---PTAG 364
H + + A C+NC GH A +C PK NV P
Sbjct: 301 VHPAATSAQNQPVRKEQGSKTVTCFNCGDLGHYADKC--PKPRRVKNVPAPNNSNVPAPK 358
Query: 365 GRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFE 424
RV ++ EA+ ++ T + LFDSGATHSF+ + A+ +EV L
Sbjct: 359 ARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRP 418
Query: 425 LTVSTPASKSLVTNTACLECPWMYL---DKKFVANLICLPLKGLDVIIGMDWLSHHHVLL 481
L V+TP +++ T CP + + F ++LI L K LDVI+GMDWLS H ++
Sbjct: 419 LLVNTPGNQAFSTQY----CPSATIGIEEDPFPSSLILLESKDLDVILGMDWLSRHRGVI 474
Query: 482 DCANKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDV 541
DCAN+ V + S+F G V + + I +V+D+ DV
Sbjct: 475 DCANRKVTLTSSNGETV--SFFVSSPKSHG----------VTINQVALQDIPIVRDYSDV 522
Query: 542 FPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVS 601
FPED+PG+PP D+EF ID+VPGT PI PYRMA EL E+K Q+EDL +KG+IRPS S
Sbjct: 523 FPEDLPGMPPKIDIEFRIDLVPGTNPIHKRPYRMAANELAEVKRQVEDLLQKGYIRPSTS 582
Query: 602 PWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSG 661
PWGAPV+ V+KKD R+CVDYR LN+VTIKN+YPLPRIDDL DQL+GA +FSKIDLRSG
Sbjct: 583 PWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSG 642
Query: 662 YHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFID 721
YHQ+R+++EDI KTAF TRYG +E M FG+TNA A FM+ MN++F +LD+FVVVFID
Sbjct: 643 YHQLRIREEDIPKTAFTTRYGLFECTDMSFGLTNASAFFMNLMNKVFMEYLDKFVVVFID 702
Query: 722 DILIYSRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSK 781
DILIYS+ +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS
Sbjct: 703 DILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSN 762
Query: 782 VEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSF 841
VE+VL+W++PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K + WTEDCE+SF
Sbjct: 763 VESVLSWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCERSF 822
Query: 842 QDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPT 901
Q++KKRL TAPVL LP ++ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE NYPT
Sbjct: 823 QELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRSHENNYPT 882
Query: 902 HDLELAAVVFALKIWRHYLYGSTFTVFS 929
HDLELAAVV ALKIWRHYL+G+ V++
Sbjct: 883 HDLELAAVVHALKIWRHYLFGNRTEVYT 910
>gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 2784
Score = 714 bits (1843), Expect = 0.0
Identities = 414/906 (45%), Positives = 550/906 (60%), Gaps = 72/906 (7%)
Query: 35 TAALVAAQ-----NQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
T A V AQ N + + Q + A Q + L +F R PP FS +P EA
Sbjct: 1042 TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPTFSSTANPVEAGD 1100
Query: 90 WLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
WL +EK L+ T + KV + ++ L G A WW R + + ITW F AF
Sbjct: 1101 WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 1159
Query: 150 KYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQI-DEGYMCERFIEGL 208
+ P + K+ +F L QG +V EY + LA RY + ++ E+F+EGL
Sbjct: 1160 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLA---RYAPEDVRNDEERQEKFLEGL 1216
Query: 209 CYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTNQGRGDKG 268
EL + + +Q LV+ K I D Q + Q +T QG K
Sbjct: 1217 NDELSYPLMTGDYHDFQKLVD--KAIRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKP 1269
Query: 269 RHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHYANHCSESL 328
R P PQG A A + P+ + S
Sbjct: 1270 R-LTLGPQSMPQG--------------APAQQQPAKREQ-----------------SSKP 1297
Query: 329 AACWNCNKPGHTAAECRIP-KVEAAANVAGARRPTAGGRVYSISGTEAEEDDGLIRSTCE 387
C+N PGH A +C P +V+ + + P + RV ++ EA++ +I T
Sbjct: 1298 VVCFNYGDPGHYADKCPKPRRVKVVPTQSNSTAPASKARVNHVAAAEAQDAPDVILGTFL 1357
Query: 388 IAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNTACLECPWM 447
+ L+DSGATHSF+ ++ A +EV L L VSTP+S++L + P +
Sbjct: 1358 VNSVPATVLYDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSSQAL----SLQRSPSV 1413
Query: 448 YLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPDAGLAEFLNSYF 503
++ K F+ANLI L K LDVI+GMDWL+ H ++DCAN KV + + G +++
Sbjct: 1414 RIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALS 1473
Query: 504 SKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPVRDMEFTIDIVP 563
S+ L S ++ ++E I +V+++ DVFP+D+PG+PP RD+EF ID+VP
Sbjct: 1474 SEF------LRSRLNQIILEK-------IPIVREYPDVFPDDLPGMPPKRDIEFRIDLVP 1520
Query: 564 GTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDY 623
GT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD R+CVDY
Sbjct: 1521 GTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDY 1580
Query: 624 RQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGH 683
R LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI KTAF TRYG
Sbjct: 1581 RALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGL 1640
Query: 684 YEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEHEEHLRQVLQV 743
+E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYSR +EEHEEHLR L+
Sbjct: 1641 FECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEK 1700
Query: 744 LRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKTVTDIRSFIGL 803
LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+V W++PKTV++IRSF+GL
Sbjct: 1701 LREHQLYAKFSKCEFWLSEVKFLGHVISARGVAVDPSNVESVTNWKQPKTVSEIRSFLGL 1760
Query: 804 AGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTLPQEKEPY 863
AGYYRRFIE F+KIA P+T+L +K+ + W+E+CEQSFQ++K RL +AP+L LP K+ +
Sbjct: 1761 AGYYRRFIENFSKIAKPMTRLFQKDVKYKWSEECEQSFQELKSRLISAPILILPDPKKGF 1820
Query: 864 EVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGS 923
+VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHDLELAAVV ALKIWRHYL+G+
Sbjct: 1821 QVYCDASKFGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLFGT 1880
Query: 924 TFTVFS 929
V++
Sbjct: 1881 RTEVYT 1886
Score = 163 bits (413), Expect = 2e-38
Identities = 103/358 (28%), Positives = 164/358 (45%), Gaps = 32/358 (8%)
Query: 577 PAELTELKSQLEDLTKKGFIRPSVSP-WGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRY 635
P + ++ +L+ L K FIR + P W A ++V+K +G+ R+CVD+ LNK K+ +
Sbjct: 440 PKKKQAIREELDKLLKASFIREVLHPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHF 499
Query: 636 PLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTN 695
PLPRID L+D G + S +D SGYHQI + ED +KT T +G + Y+ MPFG+
Sbjct: 500 PLPRIDQLVDSTAGCELLSFLDAYSGYHQISMAKEDEEKTTLITPFGVFCYVKMPFGLIT 559
Query: 696 APAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEHEEHLRQVLQVLRDKVLYANATK 755
A F + + L V ++DDI+ ++ + + LR+ LR
Sbjct: 560 AGNTFQRTVQGALNDLLGHNVEAYVDDIVFKTKTSDSLIDDLRETFDNLR---------- 609
Query: 756 CEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFA 815
GI +P K++A+ + P + +++ G RF+
Sbjct: 610 -----------------RGIEENPEKIKAIENMKSPTRLKEVQKLTGCMAALSRFVARMG 652
Query: 816 KIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLG 875
+ P L +K F WT++ E +F +K+ L+ PVL PQ E +Y A+
Sbjct: 653 ERGQPFFTLLKKQDKFVWTQEAEDAFIALKRYLSDPPVLVAPQPNEELFLYIAATPYSES 712
Query: 876 CVLMQHR----KAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFS 929
+++ R + V Y S L + YP L AV+ + RHY TV S
Sbjct: 713 TIIIVERAKVQRLVYYVSAALHDAKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVS 770
>gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532218|ref|NP_920411.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225021|gb|AAL86497.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 714 bits (1842), Expect = 0.0
Identities = 419/914 (45%), Positives = 551/914 (59%), Gaps = 58/914 (6%)
Query: 35 TAALVAAQ-----NQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
T A V AQ N + + Q + A Q + L +F R PP FS +P EA
Sbjct: 273 TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPTFSSTTNPVEAGD 331
Query: 90 WLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
WL +EK L+ T + KV + ++ L G A WW R + + ITW F AF
Sbjct: 332 WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 390
Query: 150 KYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMCERFIEGLC 209
+ P + K+ +F L QG +V EY + LA + +E E+F+EGL
Sbjct: 391 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLACYAPEDVRNDEERQ--EKFLEGLN 448
Query: 210 YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTNQGRGDKGR 269
EL + + +Q LV+K I D Q + Q +T QG + R
Sbjct: 449 DELSYPLMTGDYSDFQKLVDKA--IRQEDKYNRMEQKKRRMAQ-----FKTQQGNNQRPR 501
Query: 270 ---------HFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHY 320
H VRPQ + F GN I + P ++
Sbjct: 502 LTLGPQSMPHGGSSSVVRPQRQ-----FFNNNAGNNIRNQAPRPVAVPTQQQPAKREQ-- 554
Query: 321 ANHCSESLAACWNCNKPGHTAAECRIPK-VEAAANVAGARRPTAGGRVYSISGTEAEEDD 379
C+NC PGH A +C P+ V+ + + P + RV ++ EA++
Sbjct: 555 ----GSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQDAP 610
Query: 380 GLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNT 439
+I T + LFDSG THSF+ ++ A +EV L L VSTP++++L
Sbjct: 611 DVILGTFLVNSVPTTVLFDSGVTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 670
Query: 440 ACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPDAGL 495
+ P + ++ K F+ANLI L K LDVI+GMDWL+ H ++DCAN KV + + G
Sbjct: 671 S----PSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGR 726
Query: 496 AEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPVRDM 555
+++ S+ SLR S L T+ E I +VQ++ DVFP+D+PG+PP RD+
Sbjct: 727 VVTVHALSSE-SLR----SRLNQITLEE--------IPIVQEYPDVFPDDLPGMPPKRDI 773
Query: 556 EFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDG 615
EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD
Sbjct: 774 EFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDH 833
Query: 616 RSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKT 675
R+CVDYR LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI KT
Sbjct: 834 TQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKT 893
Query: 676 AFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEHEE 735
AF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYSR +EEHEE
Sbjct: 894 AFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEE 953
Query: 736 HLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKTVT 795
HLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+V W++PKTV+
Sbjct: 954 HLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVS 1013
Query: 796 DIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLT 855
+IRSF+GLAGYYRRFIE F+KIA P T+L +K+ + W+E+CEQSFQ++K RL +AP+L
Sbjct: 1014 EIRSFLGLAGYYRRFIENFSKIARPRTRLLQKDVKYKWSEECEQSFQELKNRLISAPILI 1073
Query: 856 LPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKI 915
LP K+ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHDLELAAVV ALKI
Sbjct: 1074 LPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKI 1133
Query: 916 WRHYLYGSTFTVFS 929
WRHYL+G+ V++
Sbjct: 1134 WRHYLFGTRTEVYT 1147
>emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar-group)]
gi|50930145|ref|XP_474600.1| OSJNBb0115I21.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1779
Score = 714 bits (1842), Expect = 0.0
Identities = 422/916 (46%), Positives = 552/916 (60%), Gaps = 62/916 (6%)
Query: 35 TAALVAAQ-----NQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
T A V AQ N + + Q + A Q + L +F R PP FS +P EA
Sbjct: 330 TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEASD 388
Query: 90 WLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
WL +EK L+ T + KV + ++ L G A WW R + + ITW F AF
Sbjct: 389 WLHAIEKKLDLLQCTDQDKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 447
Query: 150 KYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC-ERFIEGL 208
+ P + K+ +F L QG +V EY + LA RY + C E+F+ GL
Sbjct: 448 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLA---RYAPEDVRNDEECQEKFLGGL 504
Query: 209 CYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTNQGRGDKG 268
EL + +Q LV+K I D Q + Q +T QG K
Sbjct: 505 NDELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKP 557
Query: 269 RHFQKKPYVRPQGRGTT-----SGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHYANH 323
R P PQG ++ F GN I + P V + K N
Sbjct: 558 R-LTLGPQSVPQGGSSSVVRPQRQFFNNNAGNNIRNQAP--RPVAVPAQQQPAKREQGN- 613
Query: 324 CSESLAACWNCNKPGHTAAECRIP---KVEAAANVAGARRPTAGGRVYSISGTEAEEDDG 380
C+NC PGH A +C P KV A N + P + RV ++ EA+
Sbjct: 614 ---KPVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAV--PASKARVNHVAAAEAQGAPD 668
Query: 381 LIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNTA 440
+I T + LFDSGATHSF+ ++ A +EV L L VSTP++++L +
Sbjct: 669 VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRS 728
Query: 441 CLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAGLAE 497
P + ++ + F+ANLI L K LDVI+GMDWL+ H ++DCAN+ V
Sbjct: 729 ----PSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVT-------- 776
Query: 498 FLNSYFSKL----SLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPVR 553
LNSY ++ +L +L S ++ +E I +V+++ DVFP+D+PG+PP R
Sbjct: 777 -LNSYDGRVVTVHALSSESLRSRLNQITLEE-------IPIVREYPDVFPDDLPGMPPKR 828
Query: 554 DMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKK 613
D+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KK
Sbjct: 829 DIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKK 888
Query: 614 DGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQ 673
D R+CVDYR LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI
Sbjct: 889 DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIP 948
Query: 674 KTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEH 733
KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYSR +EEH
Sbjct: 949 KTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEH 1008
Query: 734 EEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKT 793
EEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+V W++PKT
Sbjct: 1009 EEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKT 1068
Query: 794 VTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPV 853
V++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+ + W+E+CEQSFQ++K RL +AP+
Sbjct: 1069 VSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPI 1128
Query: 854 LTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFAL 913
L LP K+ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHD+ELAAVV AL
Sbjct: 1129 LILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHAL 1188
Query: 914 KIWRHYLYGSTFTVFS 929
KIWRHYL+G+ V++
Sbjct: 1189 KIWRHYLFGTRTEVYT 1204
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 714 bits (1842), Expect = 0.0
Identities = 420/964 (43%), Positives = 558/964 (57%), Gaps = 83/964 (8%)
Query: 25 REEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDP 84
+++ E A + +Q N QR R A T + +F +PP F G
Sbjct: 87 QDQGEVSNAEFREAIRMLSQVVANQVGQQRGVRH-EGADTSRIREFLGMNPPSFMGSSTT 145
Query: 85 EEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYW---WRGARAMMEADHQAITWE 141
E+ + +++EL++IF + +V+ Y L A W W+G R + + +W
Sbjct: 146 EDPENFIEELKRIFDVMHVADTERVELAAYQLKDVARTWLDQWKGGRV---ENAPSASWA 202
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQI-DEGYM 200
F AFL +FPR + AK +FL L+Q ++V EY+ K L+ RY + D
Sbjct: 203 NFEEAFLGHFFPRELKEAKVREFLTLKQEPLSVREYSLKFTQLS---RYAPEMVADMRNR 259
Query: 201 CERFIEGLCY---ELQRAVQPLG---LNRYQVLV-----EKTKGIEAIDNARGKFQGLNK 249
F+ GL + RA +G ++R V V EK + E + R K N+
Sbjct: 260 MSLFVAGLSRLSSKEGRAAMLIGDMDISRLMVYVQQVEEEKLRDREEFRSKRAKTG--NE 317
Query: 250 PYQGSG------------GPARTNQG----------RGDKGRHFQKKPYVRPQGRGTTSG 287
P Q G GPA ++ G + F+ +P V+ G
Sbjct: 318 PGQQKGNANRPSFQERQKGPAPSSVSAPAPRYRGGHNGQNSKDFKARP-VQSSGSVAQRS 376
Query: 288 SFYPTGGNAIALRTPSGNRED--VTCFRCNKKGHYANHCSESLAACWNCNKPGHTAAECR 345
S +P A RT G D CF+C ++GH+ C + N G + R
Sbjct: 377 SLFPAC--ARCGRTHPGKCRDGQTGCFKCGQEGHFVKECPK--------NNQGSGSLGSR 426
Query: 346 IPKVEAAA----NVAGARRPTAGG--RVYSISGT-EAEEDDGLIRSTCEIAGNSLIALFD 398
A GA T GG R+Y+I+ E E ++ + ++ + AL D
Sbjct: 427 TQSSSVAPPDRMTPRGATSSTGGGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLD 486
Query: 399 SGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNTACLECPWMYLDKKFVANLI 458
GA+ SF+ A + + +L VSTP +S++ +CP K + +LI
Sbjct: 487 PGASLSFVTPYVANKFDVLPERLCEPFCVSTPVGESILAERVYRDCPVSINHKSTMVDLI 546
Query: 459 CLPLKGLDVIIGMDWLSHHHVLLDCANKVVIF--PDAGLAEFLNS-------YFSKLSLR 509
L + DVI+GMDWL + +DC +VV F P + E+ +S + S L R
Sbjct: 547 ELDMVDFDVILGMDWLHACYASIDCRTRVVKFQFPSEPILEWSSSSAVPKGRFISYLKAR 606
Query: 510 K----GALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPVRDMEFTIDIVPGT 565
K G + L + + +V++F +VFP+D+PGIPP R+++F ID++P T
Sbjct: 607 KLVSKGCIYHLARVNDSSVEIPYFQSVPIVREFPEVFPDDLPGIPPEREIDFGIDLIPDT 666
Query: 566 GPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQ 625
PISI PYRMAPAEL ELK DL +KGFIRPSVSPWGAPVL V+KKDG R+C+DYRQ
Sbjct: 667 RPISIPPYRMAPAELKELK----DLLEKGFIRPSVSPWGAPVLFVRKKDGSLRICIDYRQ 722
Query: 626 LNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYE 685
LNKVTIKN+YPLPRIDDL DQL+GA FSKIDLRSGYHQ+RV++ DI KTAFRTRYGHYE
Sbjct: 723 LNKVTIKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKTAFRTRYGHYE 782
Query: 686 YLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEHEEHLRQVLQVLR 745
+LVM FG+TNAPA FMD MNR+F P+LD FV++FIDDILIYSRN E+H HLR VLQ L+
Sbjct: 783 FLVMSFGLTNAPAAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLK 842
Query: 746 DKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKTVTDIRSFIGLAG 805
DK LYA +KCEFWL+ V FLGH++S +GI VD K+EAV W RP + T+IRSF+GLAG
Sbjct: 843 DKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAG 902
Query: 806 YYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTLPQEKEPYEV 865
YYRRF+EGF+ IA PLTKLT+K F W+E CE+SFQ++KKRL TAPVLTLP+ + V
Sbjct: 903 YYRRFVEGFSSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLITAPVLTLPEGTQGLVV 962
Query: 866 YCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTF 925
YCDAS GLGCVLMQ+ K +AY+SRQLK+HE+NYPTHDLELA VVFALK+WRHYLYG
Sbjct: 963 YCDASRIGLGCVLMQNGKVIAYASRQLKVHEKNYPTHDLELAVVVFALKLWRHYLYGVHV 1022
Query: 926 TVFS 929
+F+
Sbjct: 1023 DIFT 1026
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 713 bits (1841), Expect = 0.0
Identities = 421/910 (46%), Positives = 551/910 (60%), Gaps = 80/910 (8%)
Query: 35 TAALVAAQ-----NQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
T A V AQ N + + Q + A Q + L +F R PP FS +P EA
Sbjct: 24 TLAQVLAQQTQLMNMMMQQLQNQQNQGNNYAPPQNK-LAEFLRVRPPIFSSTTNPVEAGD 82
Query: 90 WLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
WL +EK L+ T + KV + ++ L G A WW R + + ITW F AF
Sbjct: 83 WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRITAEPITWLEFTAAFRK 141
Query: 150 KYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQI-DEGYMCERFIEGL 208
+ P + K+ +F L QG +V EY + LA RY + ++ E+F+EGL
Sbjct: 142 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLA---RYAPEDVRNDEERQEKFLEGL 198
Query: 209 CYELQRAVQPLGLNRYQVLVEKT-KGIEAIDNARGKFQGLN--KPYQGSGGPARTNQGRG 265
EL + +Q LV+K + + + K + + K QGS R G
Sbjct: 199 NDELSYPLMTGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGSNQKPRLTLGPQ 258
Query: 266 D--KGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNREDVTCFRCNKKGHYANH 323
G Q++P R QG + V CF C GHYA+
Sbjct: 259 SVPHGAPTQQQPAKREQG------------------------SKPVVCFNCGDPGHYAD- 293
Query: 324 CSESLAACWNCNKPGHTAAECRIPKVEAAANVAGARRPTAGGRVYSISGTEAEEDDGLIR 383
C KP R KV A N + P + RV ++ EA++ +I
Sbjct: 294 ---------KCPKP-------RRVKVVPAQN--NSTVPASKARVNHVAAAEAQDAPDVIL 335
Query: 384 STCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNTACLE 443
T + LFDSGATHSF+ ++ A +EV L L VSTP+ ++L +
Sbjct: 336 GTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQAL----SLQR 391
Query: 444 CPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPDAGLAEFL 499
P + ++ K F+ANLI L K LDVI+GMDWL+ H ++DCAN KV + + G +
Sbjct: 392 SPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTV 451
Query: 500 NSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPVRDMEFTI 559
++ S+ SLR S L T+ E I +V+++ DVFP+D+PG+PP RD+EF I
Sbjct: 452 HALSSE-SLR----SKLNQITLEE--------IPIVREYPDVFPDDLPGMPPKRDIEFRI 498
Query: 560 DIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRL 619
D+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD R+
Sbjct: 499 DLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRM 558
Query: 620 CVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRT 679
CVDYR LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI KTAF T
Sbjct: 559 CVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTT 618
Query: 680 RYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREEHEEHLRQ 739
RYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYSR +EEHEEHLR
Sbjct: 619 RYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRL 678
Query: 740 VLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPKTVTDIRS 799
L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+V W++PKTV++IRS
Sbjct: 679 ALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRS 738
Query: 800 FIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTLPQE 859
F+GLAGYYRRFIE F+KIA P+T+L +K+ + W+E+CEQSFQ++K RL +AP+L LP
Sbjct: 739 FLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLISAPILILPDP 798
Query: 860 KEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHY 919
K+ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHDLELAAVV ALKIWRHY
Sbjct: 799 KKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHALKIWRHY 858
Query: 920 LYGSTFTVFS 929
L+G+ V++
Sbjct: 859 LFGTRTEVYT 868
>emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa (japonica cultivar-group)]
Length = 1528
Score = 713 bits (1841), Expect = 0.0
Identities = 421/917 (45%), Positives = 556/917 (59%), Gaps = 64/917 (6%)
Query: 35 TAALVAAQ-----NQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
T A V AQ N + + Q + A Q + L +F R PP FS +P EA
Sbjct: 144 TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEAGD 202
Query: 90 WLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
WL +EK L+ T + KV + +Y L G A WW R + + ITW F AF
Sbjct: 203 WLHAIEKKLDLLQCTDQEKVSFASYQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 261
Query: 150 KYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMCERFIEGLC 209
+ P + K+ +F L QG +V EY + LA++ +E E+F+EGL
Sbjct: 262 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRTDEERQ--EKFLEGLN 319
Query: 210 YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGK----------FQGLNKPYQGSGGPAR 259
EL + + +Q LV+K E N + QG N+ + + GP
Sbjct: 320 DELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGSNQKPRLALGPQP 379
Query: 260 TNQGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTGGNAIALRTPSGNRE---DVTCFRCNK 316
QG Q++ + G + + P A A + P+ + V CF C
Sbjct: 380 MPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVA--APAQQQPAKREQGSKPVVCFNCGD 437
Query: 317 KGHYANHCSESLAACWNCNKPGHTAAECRIPKVEAAANVAGARRPTAGGRVYSISGTEAE 376
GHYA+ C KP R+ V A +N + P + RV ++ EA+
Sbjct: 438 PGHYAD----------KCPKPR------RVKVVPAQSN---STVPASKARVNHVAAAEAQ 478
Query: 377 EDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLV 436
+ +I T + LFDSGATHSF+ ++ A +EV L L VSTP +++L
Sbjct: 479 DAPDMILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPGNQAL- 537
Query: 437 TNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPD 492
+ P + ++ K F+ANLI L K LDVI+GMDWL+ H ++DCAN KV + +
Sbjct: 538 ---SLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN 594
Query: 493 AGLAEFLNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDVPGIPPV 552
G +N+ S+ SLR S L T+ E I +V+++ DVFP+D+PG+PP
Sbjct: 595 DGRVVTVNALSSE-SLR----SRLNQITLEE--------IPIVREYSDVFPDDLPGMPPK 641
Query: 553 RDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKK 612
RD+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS S WGAPV+ +K
Sbjct: 642 RDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSLWGAPVIFWEK 701
Query: 613 KDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDI 672
KD R+CVDYR LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI
Sbjct: 702 KDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDI 761
Query: 673 QKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNREE 732
KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIYSR +EE
Sbjct: 762 PKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEE 821
Query: 733 HEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWERPK 792
HEEHLR L+ LR+ LYA +KCEFWL EVKFLGHVIS G+AVDPS VE+V W++PK
Sbjct: 822 HEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPK 881
Query: 793 TVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAP 852
TV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+ + W+E+CEQSFQ++K RL +AP
Sbjct: 882 TVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAP 941
Query: 853 VLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFA 912
+L LP K+ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHDLELAAVV A
Sbjct: 942 ILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHA 1001
Query: 913 LKIWRHYLYGSTFTVFS 929
LKIWRHYL+G+ V++
Sbjct: 1002 LKIWRHYLFGTRTEVYT 1018
>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1715
Score = 712 bits (1837), Expect = 0.0
Identities = 417/923 (45%), Positives = 553/923 (59%), Gaps = 63/923 (6%)
Query: 22 TAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGG 81
T A+ A+ + + QNQ + V + + L +F R PP FS
Sbjct: 266 TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHVPPQNK---------LAEFLRVRPPVFSST 316
Query: 82 FDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWE 141
+P EA WL +EK L+ T + KV + ++ L G A WW R + + ITW
Sbjct: 317 TNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWL 375
Query: 142 CFRGAFLDKYFPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
F AF + P + K+ +F L QG +V EY + LA++ +E
Sbjct: 376 EFTAAFRKTHIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ-- 433
Query: 202 ERFIEGLCYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGLNKPYQGSGGPARTN 261
E+F+ GL EL + +Q LV+K I D Q + Q +T
Sbjct: 434 EKFLGGLNDELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQ 486
Query: 262 QGRGDKGRHFQKKPYVRPQGRGTT-----SGSFYPTGGNAIALRTPSGNREDVTCFRCNK 316
QG K R P PQG ++ F GN I P V +
Sbjct: 487 QGNNQKPR-LTLGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNLAP--RPVAVPAQQQPA 543
Query: 317 KGHYANHCSESLAACWNCNKPGHTAAECRIP---KVEAAANVAGARRPTAGGRVYSISGT 373
K N C+NC PGH A +C P KV A N + PT+ RV ++
Sbjct: 544 KREQGN----KPVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAV--PTSKARVNHVAAA 597
Query: 374 EAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASK 433
EA++ +I + LFDSGATHSF+ ++ A +EV L L VSTP+++
Sbjct: 598 EAQDAPDVILGMFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQ 657
Query: 434 SLVTNTACLECPWMYLDKK---FVANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIF 490
+L + P + ++ + F+ANLI L K LDVI+GMDWL+ H ++DCAN+ V
Sbjct: 658 ALSLQRS----PSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVT- 712
Query: 491 PDAGLAEFLNSYFSKL----SLRKGALSSLMSTTVVEAKENGVHGIAVVQDFEDVFPEDV 546
LNSY ++ +L +L S ++ +E I +V+++ DVFP+D+
Sbjct: 713 --------LNSYDGRVVTVHALSSESLRSRLNQITLEE-------IPIVREYPDVFPDDL 757
Query: 547 PGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAP 606
PG+PP RD+EF ID+VPGT PI PYRMA EL E+K Q++DL +KG+IRPS SPWGAP
Sbjct: 758 PGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAP 817
Query: 607 VLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIR 666
V+ V+KKD R+CVDYR LN VTIKN+YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R
Sbjct: 818 VIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLR 877
Query: 667 VKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIY 726
+K+EDI KTAF TRYG +E VM FG+TNAPA FM+ MN++F +LD+FVVVFIDDILIY
Sbjct: 878 IKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIY 937
Query: 727 SRNREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVL 786
SR +EEHEEHLR L+ LR+ LYA +KCEFWL EVKFLGH+IS G+AVDPS VE+V
Sbjct: 938 SRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHIISAGGVAVDPSNVESVT 997
Query: 787 AWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKK 846
W++PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+ + W+E+CEQSFQ++K
Sbjct: 998 NWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKS 1057
Query: 847 RLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLEL 906
RL +AP+L LP K+ ++VYCDAS GLGCVLMQ K VAY+SRQL+ HE+NYPTHD+EL
Sbjct: 1058 RLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIEL 1117
Query: 907 AAVVFALKIWRHYLYGSTFTVFS 929
AAVV ALKIWRHYL+G+ V++
Sbjct: 1118 AAVVHALKIWRHYLFGTRTEVYT 1140
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,556,085,348
Number of Sequences: 2540612
Number of extensions: 67842604
Number of successful extensions: 289284
Number of sequences better than 10.0: 39037
Number of HSP's better than 10.0 without gapping: 2899
Number of HSP's successfully gapped in prelim test: 36149
Number of HSP's that attempted gapping in prelim test: 213074
Number of HSP's gapped (non-prelim): 47622
length of query: 929
length of database: 863,360,394
effective HSP length: 138
effective length of query: 791
effective length of database: 512,755,938
effective search space: 405589946958
effective search space used: 405589946958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)
Lotus: description of TM0004b.4