BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0004a.3
(148 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64884.1| auxin-induced protein, putative [Arabidopsis thal... 79 2e-14
ref|NP_565113.1| auxin-responsive family protein [Arabidopsis th... 79 2e-14
gb|AAF87116.1| F10A5.20 [Arabidopsis thaliana] 79 2e-14
emb|CAB96854.1| putative protein [Arabidopsis thaliana] gi|15238... 77 7e-14
ref|NP_173413.1| auxin-responsive family protein [Arabidopsis th... 77 1e-13
gb|AAF31170.1| unknown [Zea mays] 77 1e-13
dbj|BAD53780.1| auxin-induced protein-like [Oryza sativa (japoni... 75 4e-13
ref|XP_464128.1| auxin-induced protein-like [Oryza sativa (japon... 74 9e-13
emb|CAE03645.2| OSJNBa0060N03.10 [Oryza sativa (japonica cultiva... 72 2e-12
emb|CAB80192.1| putative protein [Arabidopsis thaliana] gi|30969... 69 2e-11
gb|AAR20762.1| At4g34750 [Arabidopsis thaliana] gi|41349926|gb|A... 68 5e-11
ref|XP_474224.1| OSJNBa0084K01.8 [Oryza sativa (japonica cultiva... 68 5e-11
gb|AAM62891.1| unknown [Arabidopsis thaliana] 67 1e-10
dbj|BAC42954.1| putative auxin-regulated protein [Arabidopsis th... 67 1e-10
ref|NP_177688.1| auxin-responsive protein, putative [Arabidopsis... 66 2e-10
dbj|BAD36439.1| auxin-induced protein-like [Oryza sativa (japoni... 65 4e-10
emb|CAB80549.1| putative auxin-induced protein [Arabidopsis thal... 64 6e-10
emb|CAB80193.1| putative auxin-regulated protein [Arabidopsis th... 64 6e-10
dbj|BAB10705.1| auxin-induced protein-like [Arabidopsis thaliana... 64 6e-10
gb|AAN15677.1| Putative auxin-regulated protein [Arabidopsis tha... 63 2e-09
>gb|AAM64884.1| auxin-induced protein, putative [Arabidopsis thaliana]
Length = 154
Score = 79.0 bits (193), Expect = 2e-14
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 1 MAGAMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRP---PSGCLYVYVGHERQRFAI 57
MAG + K KIR IVRL+Q++ RW+ + S P PSG + VYVG +RF +
Sbjct: 1 MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDLPSGHVAVYVGSSCRRFVV 60
Query: 58 PARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNEN 107
A +LN PV LL + EEEFG G L++PC+ F ++ + ++++
Sbjct: 61 RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDS 110
>ref|NP_565113.1| auxin-responsive family protein [Arabidopsis thaliana]
Length = 154
Score = 79.0 bits (193), Expect = 2e-14
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 1 MAGAMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRP---PSGCLYVYVGHERQRFAI 57
MAG + K KIR IVRL+Q++ RW+ + S P PSG + VYVG +RF +
Sbjct: 1 MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVV 60
Query: 58 PARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNEN 107
A +LN PV LL + EEEFG G L++PC+ F ++ + ++++
Sbjct: 61 RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDS 110
>gb|AAF87116.1| F10A5.20 [Arabidopsis thaliana]
Length = 198
Score = 79.0 bits (193), Expect = 2e-14
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 1 MAGAMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRP---PSGCLYVYVGHERQRFAI 57
MAG + K KIR IVRL+Q++ RW+ + S P PSG + VYVG +RF +
Sbjct: 1 MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVV 60
Query: 58 PARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNEN 107
A +LN PV LL + EEEFG G L++PC+ F ++ + ++++
Sbjct: 61 RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDS 110
>emb|CAB96854.1| putative protein [Arabidopsis thaliana]
gi|15238919|ref|NP_196660.1| auxin-responsive family
protein [Arabidopsis thaliana] gi|11358297|pir||T50808
hypothetical protein T30N20_260 - Arabidopsis thaliana
Length = 148
Score = 77.4 bits (189), Expect = 7e-14
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1 MAGAMKKVDKIRQIVRLKQVMMRWKQ----ISLRRHDSSDPRPPSGCLYVYVGHERQRFA 56
MAG + K KIR IV+L+Q++ +W+ S+RR SD PSG + VYVG +RF
Sbjct: 1 MAGGIGKCSKIRHIVKLRQMLRQWRNKARMSSVRRSVPSDV--PSGHVAVYVGRSCRRFV 58
Query: 57 IPARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVK 100
+ A +LN P+ LL + EEEFG G L++PC+ F ++
Sbjct: 59 VLATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIR 102
>ref|NP_173413.1| auxin-responsive family protein [Arabidopsis thaliana]
gi|25513638|pir||F86331 F6F9.11 protein - Arabidopsis
thaliana gi|10086488|gb|AAG12548.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 153
Score = 76.6 bits (187), Expect = 1e-13
Identities = 42/111 (37%), Positives = 66/111 (58%), Gaps = 6/111 (5%)
Query: 1 MAGAMKKVDKIRQIVRLKQVMMRWKQ----ISLRRHDSSDPRPPSGCLYVYVGHERQRFA 56
MAG++ K KIR IVRL+Q++ RW+ S+ R SD PSG + V VG +RF
Sbjct: 1 MAGSLVKCSKIRHIVRLRQMLRRWRNKARLSSVSRCVPSDV--PSGHVAVCVGSGCRRFV 58
Query: 57 IPARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNEN 107
+ A +LN P+ + LL + EEEFG G L++PC+ F ++ + ++++
Sbjct: 59 VRASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESVFEEAIRFISRSDS 109
>gb|AAF31170.1| unknown [Zea mays]
Length = 147
Score = 76.6 bits (187), Expect = 1e-13
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 9 DKIRQIVRLKQVMMRWKQISLRRHDSSDP----RPPSGCLYVYVGHERQRFAIPARFLNL 64
+KIR IVRL+Q++ +WK+++ ++ P G VYVG E +RF IP +L
Sbjct: 20 NKIRDIVRLQQLLKKWKKLATVTPSAASSGGRSSVPRGSFAVYVGEEMRRFVIPTEYLGH 79
Query: 65 PVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNE 106
FA LL E EEEFG R G L +PCDV F I++ + + +
Sbjct: 80 WAFADLLREAEEEFGFRHEGALRIPCDVDSFQGILRLVQQGQ 121
>dbj|BAD53780.1| auxin-induced protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 134
Score = 74.7 bits (182), Expect = 4e-13
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 3 GAMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRPPSGCLYVYVGHERQRFAIPARFL 62
G + +KIR IVRL+Q++ RWK+++ P G VYVG E +RF IP +L
Sbjct: 8 GVGRASNKIRDIVRLQQLLKRWKKLATMAPGGRSG-VPKGSFAVYVGEEMRRFVIPTEYL 66
Query: 63 NLPVFAGLLDETEEEFGLRGSGGLILPCDVCFF 95
F LL + EEEFG R G L +PCDV F
Sbjct: 67 GHWAFERLLRDAEEEFGFRHQGALRIPCDVAAF 99
>ref|XP_464128.1| auxin-induced protein-like [Oryza sativa (japonica cultivar-group)]
gi|45736190|dbj|BAD13235.1| auxin-induced protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 154
Score = 73.6 bits (179), Expect = 9e-13
Identities = 41/111 (36%), Positives = 59/111 (52%), Gaps = 5/111 (4%)
Query: 3 GAMKKVDKIRQIVRLKQVMMRWKQISL-----RRHDSSDPRPPSGCLYVYVGHERQRFAI 57
G +KIR IVRL Q++ RWK+ +L + ++ P G V VG E +RF I
Sbjct: 5 GGRASSNKIRDIVRLHQLLKRWKRAALAPKAGKNNNGGGASVPKGFFAVCVGEEMRRFVI 64
Query: 58 PARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRLHKNENK 108
P +L F LL + EEEFG + G L +PCDV F I++ + + + K
Sbjct: 65 PTEYLGHWAFEQLLRKAEEEFGFQHEGALRIPCDVEVFEGILRLVGRKDEK 115
>emb|CAE03645.2| OSJNBa0060N03.10 [Oryza sativa (japonica cultivar-group)]
gi|50928599|ref|XP_473827.1| OSJNBa0060N03.10 [Oryza
sativa (japonica cultivar-group)]
Length = 176
Score = 72.4 bits (176), Expect = 2e-12
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 31/135 (22%)
Query: 3 GAMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPR------------------------ 38
G KK +KI +IVRL+Q++ +W+++S+ D++
Sbjct: 12 GGGKKSNKITEIVRLQQMLKKWRKLSVAPKDAAATAGNGGGGESKAKKFLKRTLSFTDGG 71
Query: 39 -------PPSGCLYVYVGHERQRFAIPARFLNLPVFAGLLDETEEEFGLRGSGGLILPCD 91
PP G L V VG QRF IP +L FA LL E EEEFG + G L +PC+
Sbjct: 72 ASPGGTPPPRGHLAVCVGPTAQRFVIPTDYLKHRAFAALLREAEEEFGFQQEGVLRIPCE 131
Query: 92 VCFFTHIVKRLHKNE 106
V F I+K + KN+
Sbjct: 132 VPAFEAILKAVEKNK 146
>emb|CAB80192.1| putative protein [Arabidopsis thaliana]
gi|3096944|emb|CAA18854.1| putative protein
[Arabidopsis thaliana] gi|15236186|ref|NP_195201.1|
auxin-responsive protein, putative / small auxin up RNA
(SAUR_E) [Arabidopsis thaliana] gi|7487665|pir||T05295
hypothetical protein T4L20.330 - Arabidopsis thaliana
Length = 150
Score = 69.3 bits (168), Expect = 2e-11
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 5 MKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRP--PSGCLYVYVGHERQRFAIPARFL 62
M K +KI +VR++Q++ +W++ + ++DP P G + V VG R+R+ + A+ L
Sbjct: 1 MGKNNKIGSVVRIRQMLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHL 60
Query: 63 NLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIV 99
N P+F LL E EEE+G G L +PCD F I+
Sbjct: 61 NHPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDII 97
>gb|AAR20762.1| At4g34750 [Arabidopsis thaliana] gi|41349926|gb|AAS00348.1|
At4g34750 [Arabidopsis thaliana]
Length = 150
Score = 67.8 bits (164), Expect = 5e-11
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 5 MKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRP--PSGCLYVYVGHERQRFAIPARFL 62
M K +KI +VR+++++ +W++ + ++DP P G + V VG R+R+ + A+ L
Sbjct: 1 MGKNNKIGSVVRIRRMLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHL 60
Query: 63 NLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIV 99
N P+F LL E EEE+G G L +PCD F I+
Sbjct: 61 NHPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDII 97
>ref|XP_474224.1| OSJNBa0084K01.8 [Oryza sativa (japonica cultivar-group)]
gi|38346068|emb|CAE04836.2| OSJNBa0084K01.8 [Oryza
sativa (japonica cultivar-group)]
Length = 143
Score = 67.8 bits (164), Expect = 5e-11
Identities = 42/114 (36%), Positives = 60/114 (51%), Gaps = 5/114 (4%)
Query: 5 MKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRPPSGCLYVYVGHERQRFAIPARFLNL 64
M K KIR IV L+Q + RW+ + R ++ P+G + V VG +RF + A LN
Sbjct: 1 MAKCSKIRYIVWLRQTLRRWRSRAAAR--AAAEAVPAGHVAVCVGGASRRFVVRAAHLNH 58
Query: 65 PVFAGLLDETEEEFGLRGS---GGLILPCDVCFFTHIVKRLHKNENKYGKLTLE 115
PVF LL + EEE+G G + LPCD F H+++ L + +TLE
Sbjct: 59 PVFRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHVLRHLSSPSSAARFVTLE 112
>gb|AAM62891.1| unknown [Arabidopsis thaliana]
Length = 160
Score = 66.6 bits (161), Expect = 1e-10
Identities = 41/133 (30%), Positives = 64/133 (47%), Gaps = 39/133 (29%)
Query: 7 KVDKIRQIVRLKQVMMRWKQISL-----------RRHDS--------------------- 34
K+ I+ IVRLK+++ +W+ +++ R+H +
Sbjct: 8 KLTGIKHIVRLKEILQKWQTVTIGSKSDDGELGARKHTAIISPVINKRLLDLKTCDSDEE 67
Query: 35 -------SDPRPPSGCLYVYVGHERQRFAIPARFLNLPVFAGLLDETEEEFGLRGSGGLI 87
S P P G L VYVG E +RF IP FL+ +F LL++ EEE+G SG L
Sbjct: 68 TTCQSPESPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALT 127
Query: 88 LPCDVCFFTHIVK 100
+PC+V F +++K
Sbjct: 128 IPCEVETFKYLLK 140
>dbj|BAC42954.1| putative auxin-regulated protein [Arabidopsis thaliana]
gi|28973279|gb|AAO63964.1| putative auxin-regulated
protein [Arabidopsis thaliana] gi|4582443|gb|AAD24828.1|
putative auxin-regulated protein [Arabidopsis thaliana]
gi|20197719|gb|AAM15223.1| putative auxin-regulated
protein [Arabidopsis thaliana]
gi|15226486|ref|NP_179718.1| auxin-responsive protein,
putative [Arabidopsis thaliana] gi|25296217|pir||F84598
probable auxin-regulated protein [imported] -
Arabidopsis thaliana
Length = 104
Score = 66.6 bits (161), Expect = 1e-10
Identities = 35/102 (34%), Positives = 51/102 (49%), Gaps = 3/102 (2%)
Query: 4 AMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRP---PSGCLYVYVGHERQRFAIPAR 60
A+K+ K+ Q LKQ++ R ++ + D P P G VYVG +R R+ +P
Sbjct: 2 AVKRSSKLTQTAMLKQILKRCSSLAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPIS 61
Query: 61 FLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRL 102
FL P F LL + EEEFG GL +PC+ F + +
Sbjct: 62 FLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103
>ref|NP_177688.1| auxin-responsive protein, putative [Arabidopsis thaliana]
gi|25296214|pir||A96786 protein F10A5.21 [imported] -
Arabidopsis thaliana gi|9369378|gb|AAF87127.1| F10A5.21
[Arabidopsis thaliana]
Length = 108
Score = 65.9 bits (159), Expect = 2e-10
Identities = 36/106 (33%), Positives = 51/106 (47%), Gaps = 7/106 (6%)
Query: 4 AMKKVDKIRQIVRLKQVMMRWKQISLRR-------HDSSDPRPPSGCLYVYVGHERQRFA 56
AMKK +K+ Q +KQ++ R + ++ + S P G VYVG R R+
Sbjct: 2 AMKKANKLTQTAMIKQILKRCSSLGKKQSNVYGEDENGSPLNVPKGHFVVYVGENRVRYV 61
Query: 57 IPARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFFTHIVKRL 102
+P FL P F LL + EEEFG GL +PC+ F + L
Sbjct: 62 VPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSML 107
>dbj|BAD36439.1| auxin-induced protein-like [Oryza sativa (japonica cultivar-group)]
Length = 190
Score = 64.7 bits (156), Expect = 4e-10
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 37 PRPPS----GCLYVYVGHERQRFAIPARFLNLPVFAGLLDETEEEFGLRGSGGLILPCDV 92
P PP+ G VYVG E++RF IP R+L PVF LL++ EEEFG G L +PC+
Sbjct: 94 PEPPADVPRGYCPVYVGPEQRRFVIPTRYLGHPVFRLLLEKAEEEFGFCHQGALAIPCET 153
Query: 93 CFFTHIVKRLHKNENKYGKLTLEQFVITFSDAA 125
F +I++ + +++N + V+ +D A
Sbjct: 154 EAFKYILQCVERHDNGLAAGDVVDGVVDVNDRA 186
>emb|CAB80549.1| putative auxin-induced protein [Arabidopsis thaliana]
gi|4490338|emb|CAB38620.1| putative auxin-induced
protein [Arabidopsis thaliana]
gi|62320930|dbj|BAD93936.1| putative auxin-induced
protein [Arabidopsis thaliana]
gi|15234829|ref|NP_195597.1| auxin-responsive protein,
putative [Arabidopsis thaliana]
gi|44917489|gb|AAS49069.1| At4g38860 [Arabidopsis
thaliana] gi|7442212|pir||T06085 probable auxin-induced
protein T9A14.140 - Arabidopsis thaliana
Length = 105
Score = 64.3 bits (155), Expect = 6e-10
Identities = 36/103 (34%), Positives = 53/103 (50%), Gaps = 4/103 (3%)
Query: 4 AMKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPRP---PSGCLYVYVGHERQRFAIPAR 60
A+K+ K+ Q LKQ++ R + ++ + P P G VYVG +R R+ +P
Sbjct: 2 AVKRSSKLTQTAMLKQILKRCSSLGKKQCYDEEGLPLDVPKGHFPVYVGEKRTRYIVPIS 61
Query: 61 FLNLPVFAGLLDETEEEFGLR-GSGGLILPCDVCFFTHIVKRL 102
FL P F LL + EEEFG R GGL +PC+ F + +
Sbjct: 62 FLTHPEFLILLQQAEEEFGFRHDMGGLTIPCEEVVFLSLTSMI 104
>emb|CAB80193.1| putative auxin-regulated protein [Arabidopsis thaliana]
gi|3096945|emb|CAA18855.1| putative auxin-regulated
protein [Arabidopsis thaliana]
gi|21536599|gb|AAM60931.1| putative auxin-regulated
protein [Arabidopsis thaliana]
gi|15236187|ref|NP_195202.1| auxin-responsive family
protein [Arabidopsis thaliana] gi|7442214|pir||T05296
probable auxin-induced protein T4L20.340 - Arabidopsis
thaliana
Length = 107
Score = 64.3 bits (155), Expect = 6e-10
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 5 MKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPR-----PPSGCLYVYVGHERQRFAIPA 59
MKK K+ Q LKQ++ R + + D P G VYVG R R+ +P
Sbjct: 4 MKKTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPI 63
Query: 60 RFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFF 95
FL P F LL EEEFG GL +PCD F
Sbjct: 64 SFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVF 99
>dbj|BAB10705.1| auxin-induced protein-like [Arabidopsis thaliana]
gi|15239314|ref|NP_201427.1| auxin-responsive protein,
putative [Arabidopsis thaliana]
Length = 99
Score = 64.3 bits (155), Expect = 6e-10
Identities = 34/88 (38%), Positives = 47/88 (52%), Gaps = 1/88 (1%)
Query: 17 LKQVMMRWKQISLRRH-DSSDPRPPSGCLYVYVGHERQRFAIPARFLNLPVFAGLLDETE 75
LKQ++ R + + D + P G VYVGH R R IP FL P+F LL ++E
Sbjct: 11 LKQMLKRCSSLGKKSSVDVNFNGVPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSE 70
Query: 76 EEFGLRGSGGLILPCDVCFFTHIVKRLH 103
EEFG GL +PCD FF ++ ++
Sbjct: 71 EEFGFFQDNGLTIPCDEHFFRALISSIN 98
>gb|AAN15677.1| Putative auxin-regulated protein [Arabidopsis thaliana]
gi|17745689|gb|AAK68742.2| Putative auxin-regulated
protein [Arabidopsis thaliana]
Length = 107
Score = 62.8 bits (151), Expect = 2e-09
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 5 MKKVDKIRQIVRLKQVMMRWKQISLRRHDSSDPR-----PPSGCLYVYVGHERQRFAIPA 59
MKK K+ Q L+Q++ R + + D P G VYVG R R+ +P
Sbjct: 4 MKKTSKLTQTAMLEQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPI 63
Query: 60 RFLNLPVFAGLLDETEEEFGLRGSGGLILPCDVCFF 95
FL P F LL EEEFG GL +PCD F
Sbjct: 64 SFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVF 99
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.141 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,048,556
Number of Sequences: 2540612
Number of extensions: 10059208
Number of successful extensions: 23193
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 22967
Number of HSP's gapped (non-prelim): 185
length of query: 148
length of database: 863,360,394
effective HSP length: 124
effective length of query: 24
effective length of database: 548,324,506
effective search space: 13159788144
effective search space used: 13159788144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0004a.3