BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0592.7
(116 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g58140 hypothetical protein 112 2e-26
At1g48710 hypothetical protein 112 4e-26
At4g03810 putative retrotransposon protein 111 7e-26
At3g61330 copia-type polyprotein 111 7e-26
At3g59720 copia-type reverse transcriptase-like protein 111 7e-26
At2g13930 putative retroelement pol polyprotein 111 7e-26
At1g37110 110 1e-25
At2g15650 putative retroelement pol polyprotein 110 1e-25
At4g04440 putative transposon protein 108 3e-25
At3g29782 hypothetical protein 107 1e-24
At3g60170 putative protein 104 6e-24
At1g53810 104 8e-24
At4g21360 putative transposable element 103 1e-23
At5g35820 copia-like retrotransposable element 103 1e-23
At1g36110 hypothetical protein 102 2e-23
At2g19840 copia-like retroelement pol polyprotein 102 3e-23
At4g07810 putative polyprotein 102 4e-23
At2g15700 copia-like retroelement pol polyprotein 100 9e-23
At3g25450 hypothetical protein 100 1e-22
At4g04290 putative reverse transcriptase 100 2e-22
>At1g58140 hypothetical protein
Length = 1320
Score = 112 bits (281), Expect = 2e-26
Identities = 52/110 (47%), Positives = 83/110 (75%), Gaps = 6/110 (5%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
++Q+ GI Y + +APVAR+ T+R++++LA+ K+ IHQMDVK+AFLNG+L+EEVY++QP+
Sbjct: 875 YSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 934
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKC 115
G+++KG+ KV +L K+LY LKQ P + W+ + D+ +K +F KC
Sbjct: 935 GYIVKGEEDKVLRLKKALYGLKQAP-RAWNTRIDKY-----FKEKDFIKC 978
>At1g48710 hypothetical protein
Length = 1352
Score = 112 bits (279), Expect = 4e-26
Identities = 52/110 (47%), Positives = 82/110 (74%), Gaps = 6/110 (5%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+ Q+ GI Y + +APVAR+ T+R++++LA+ K+ IHQMDVK+AFLNG+L+EEVY++QP+
Sbjct: 907 YIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 966
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKC 115
G+++KG+ KV +L K+LY LKQ P + W+ + D+ +K +F KC
Sbjct: 967 GYIVKGEEDKVLRLKKALYGLKQAP-RAWNTRIDKY-----FKEKDFIKC 1010
>At4g03810 putative retrotransposon protein
Length = 964
Score = 111 bits (277), Expect = 7e-26
Identities = 54/111 (48%), Positives = 76/111 (67%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+ Q GI Y +TY+PVA + +IR+LLA A+ Y + I QMDVKTAFLNG L+E VYM QPE
Sbjct: 514 YKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPE 573
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GF + +KVCKL +S+Y LKQ + W+ +F++ + ++ NE + CV
Sbjct: 574 GFTVPEAARKVCKLHRSIYGLKQA-SRSWNLRFNEAIKEFDFIRNEEEPCV 623
>At3g61330 copia-type polyprotein
Length = 1352
Score = 111 bits (277), Expect = 7e-26
Identities = 52/110 (47%), Positives = 82/110 (74%), Gaps = 6/110 (5%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
++Q+ GI Y + +APVAR+ T+R++++LA+ K+ IHQMDVK+AFLNG+L+EEVY++QP+
Sbjct: 907 YSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 966
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKC 115
G+++KG+ KV +L K LY LKQ P + W+ + D+ +K +F KC
Sbjct: 967 GYIVKGEEDKVLRLKKVLYGLKQAP-RAWNTRIDKY-----FKEKDFIKC 1010
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 111 bits (277), Expect = 7e-26
Identities = 52/110 (47%), Positives = 82/110 (74%), Gaps = 6/110 (5%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
++Q+ GI Y + +APVAR+ T+R++++LA+ K+ IHQMDVK+AFLNG+L+EEVY++QP+
Sbjct: 907 YSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQ 966
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKC 115
G+++KG+ KV +L K LY LKQ P + W+ + D+ +K +F KC
Sbjct: 967 GYIVKGEEDKVLRLKKVLYGLKQAP-RAWNTRIDKY-----FKEKDFIKC 1010
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 111 bits (277), Expect = 7e-26
Identities = 54/111 (48%), Positives = 77/111 (68%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
FTQKEG+ Y + ++PV + +IR LL++ Y + QMDVKTAFL+G L+EE+YM QPE
Sbjct: 889 FTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPE 948
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GF IK KVC L +SLY LKQ+P ++W+ +FD+ + +Y + +D CV
Sbjct: 949 GFEIKRGSNKVCLLKRSLYGLKQSP-RQWNLRFDEFMRGIKYTRSAYDSCV 998
>At1g37110
Length = 1356
Score = 110 bits (275), Expect = 1e-25
Identities = 51/111 (45%), Positives = 80/111 (71%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQ+EG+ Y + +APV + +IR+L++L + QMDVKT FL+G+L+EE+YM+QPE
Sbjct: 912 YTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPE 971
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GFV KVC+L KSLY LKQ+P ++W+++FD+ + + ++ +E D CV
Sbjct: 972 GFVSDSSENKVCRLKKSLYGLKQSP-RQWNKRFDRFMSSQQFIRSEHDACV 1021
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 110 bits (274), Expect = 1e-25
Identities = 53/102 (51%), Positives = 77/102 (74%), Gaps = 1/102 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
F+Q+ GI Y +T+APV+R TIR LLA A+ K+ ++QMDVK+AFLNGEL+EEVY+ QP
Sbjct: 906 FSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPP 965
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEY 107
GFVI+G+ +KV +L K+LY LKQ P + W+++ D + + +
Sbjct: 966 GFVIEGKEEKVLRLYKALYGLKQAP-RAWYERIDSYFIQNGF 1006
>At4g04440 putative transposon protein
Length = 570
Score = 108 bits (271), Expect = 3e-25
Identities = 50/111 (45%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
FTQ++GI Y + +APV + T+IRVL+++ + + QMDVKTAFL+G+LD+ +YM+QPE
Sbjct: 223 FTQRKGIDYDEVFAPVVKHTSIRVLMSIVAQDDLELEQMDVKTAFLHGDLDKPLYMEQPE 282
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
G+V+ +VC L KSLY LKQ P ++W++KF+ ++ + ++ D CV
Sbjct: 283 GYVVDESKDQVCLLKKSLYGLKQAP-RQWNKKFNSFIMDQNFTRSDHDSCV 332
>At3g29782 hypothetical protein
Length = 1130
Score = 107 bits (266), Expect = 1e-24
Identities = 52/76 (68%), Positives = 61/76 (79%), Gaps = 1/76 (1%)
Query: 28 RVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPEGFVIKGQVQKVCKLTKSLYELK 87
R+L+ A+L IHQMDVKTAFL+G+LDEE+YMKQPEGFVI GQ KVCKL KSLY LK
Sbjct: 802 RMLIGFAALRDLEIHQMDVKTAFLHGDLDEEIYMKQPEGFVIPGQEHKVCKLVKSLYGLK 861
Query: 88 QTPKKKWHQKFDQVVL 103
Q P K+WH+KFD +L
Sbjct: 862 QAP-KQWHEKFDNDML 876
>At3g60170 putative protein
Length = 1339
Score = 104 bits (260), Expect = 6e-24
Identities = 49/103 (47%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+ Q GI Y + +APVAR+ T+R +LA++S + + I Q+DVK+AFL+GEL EEVY++QPE
Sbjct: 896 YAQCYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPE 955
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYK 108
GF+ +G+ +KV KL K+LY LKQ P + W+ + + L E++
Sbjct: 956 GFIREGEEEKVYKLRKALYGLKQAP-RAWYSRIEAYFLKEEFE 997
>At1g53810
Length = 1522
Score = 104 bits (259), Expect = 8e-24
Identities = 52/108 (48%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
F Q+EGI Y +TY+PV R T+R++L +A++ K+ + QMDVK AFL+G+L E VYM+QP
Sbjct: 985 FKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDVKNAFLHGDLTETVYMRQPA 1044
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFD 113
GFV K + VC L KSLY LKQ+P + W +F +L + + FD
Sbjct: 1045 GFVDKSKPDHVCLLHKSLYGLKQSP-RAWFDRFSNFLLEFGFICSLFD 1091
>At4g21360 putative transposable element
Length = 1308
Score = 103 bits (258), Expect = 1e-23
Identities = 50/111 (45%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
FTQ++GI Y + +APV + +IR+L++ + QMDVKT FL+GELD+ +YM+QPE
Sbjct: 893 FTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDMELEQMDVKTTFLHGELDQVLYMEQPE 952
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GF + + +VC L KSLY LKQ P ++W++KF +L+ ++ +E D CV
Sbjct: 953 GFEVNPEKDQVCLLKKSLYGLKQAP-RQWNKKFHAFMLSLQFARSEHDSCV 1002
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 103 bits (257), Expect = 1e-23
Identities = 48/111 (43%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
F+Q+EGI Y + ++PV + +IR LL++ + + Q+DVKTAFL+G LDE + M QPE
Sbjct: 896 FSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPE 955
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
G+ + +KVC L KSLY LKQ+P ++W+Q+FD ++ Y+ ++++ CV
Sbjct: 956 GYEDEDSTEKVCLLKKSLYGLKQSP-RQWNQRFDSFMINSGYQRSKYNPCV 1005
>At1g36110 hypothetical protein
Length = 745
Score = 102 bits (255), Expect = 2e-23
Identities = 49/97 (50%), Positives = 71/97 (72%), Gaps = 1/97 (1%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+ Q+ GI + + +APVARI T+R+++ALA+ + IH +DVKTAFL+GEL E VY+ QPE
Sbjct: 563 YVQRHGIDFDEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELKEVVYVTQPE 622
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVV 102
G+V KG +KV KL K+LY LKQ P + W+ K + ++
Sbjct: 623 GYVTKGNEEKVYKLNKALYGLKQAP-RAWNNKLNSIL 658
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 102 bits (254), Expect = 3e-23
Identities = 48/111 (43%), Positives = 79/111 (70%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
++QKEGI Y + ++PV + +IR+LL++ + + QMDVKTAFL+G LDE +Y++QPE
Sbjct: 707 YSQKEGIDYQEIFSPVVKHVSIRLLLSMVTHCDMELQQMDVKTAFLHGYLDETIYIEQPE 766
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
G+V K KVC L +SLY L+Q+P ++W+ +F++ + Y+ +++D CV
Sbjct: 767 GYVHKRYPDKVCLLKRSLYGLRQSP-RQWNNRFNEFMQKIGYERSKYDSCV 816
>At4g07810 putative polyprotein
Length = 1366
Score = 102 bits (253), Expect = 4e-23
Identities = 48/112 (42%), Positives = 82/112 (72%), Gaps = 5/112 (4%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+TQ+EG+ Y DT++P+A++T++R++LALA+++ + I QMDV AFL+G+ +EE+YM+ P+
Sbjct: 958 YTQQEGVDYIDTFSPIAKLTSVRLILALAAIHNWSISQMDVTNAFLHGDFEEEIYMQLPQ 1017
Query: 66 GFV-IKGQV---QKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFD 113
G+ KG++ + VC+L KSLY LKQ ++W KF V++ + + + FD
Sbjct: 1018 GYTPRKGELLPKRPVCRLVKSLYGLKQA-SRQWFHKFSGVLIQNGFMQSLFD 1068
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 100 bits (250), Expect = 9e-23
Identities = 49/111 (44%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
F+Q+EGI Y + ++ V + +IR++L+L + + QMDVKTAFL+G L+E + M QPE
Sbjct: 806 FSQQEGIDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLHGNLEERILMSQPE 865
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKCV 116
GF+ +G KVC L KSLY LKQ+P + W+Q+FD + +++ + +D CV
Sbjct: 866 GFIQEGNENKVCLLRKSLYGLKQSP-RLWNQRFDAFMKDQKFERSCYDPCV 915
>At3g25450 hypothetical protein
Length = 1343
Score = 100 bits (249), Expect = 1e-22
Identities = 50/110 (45%), Positives = 77/110 (69%), Gaps = 6/110 (5%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
+ Q+ G+ + + +APVARI T+R+++ALA+ + IH +DVKTAFL+GEL E+VY+ QPE
Sbjct: 889 YVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQPE 948
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFDKC 115
GF K +KV KL K+LY L+Q P + W+ K ++++ K +F+KC
Sbjct: 949 GFTNKESKEKVYKLHKALYGLRQAP-RAWNTKLNEIL-----KELKFEKC 992
>At4g04290 putative reverse transcriptase
Length = 403
Score = 100 bits (248), Expect = 2e-22
Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 6 FTQKEGIGYFDTYAPVARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPE 65
FTQ G Y DT+APVA++ T RV+L+LA+ ++ + QMDVK AFL GEL+EEVYMK P
Sbjct: 46 FTQTYGEDYLDTFAPVAKLHTFRVVLSLATNLEWDLWQMDVKNAFLQGELEEEVYMKPPP 105
Query: 66 GFVIKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQVVLAHEYKINEFD 113
G + KV KL K++Y LKQ+P + W+ K ++ +K +E D
Sbjct: 106 GLEVINAPNKVFKLKKAIYGLKQSP-RAWYHKLSTTLMGRGFKTSEAD 152
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.328 0.143 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,490,746
Number of Sequences: 26719
Number of extensions: 91583
Number of successful extensions: 399
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 102
length of query: 116
length of database: 11,318,596
effective HSP length: 92
effective length of query: 24
effective length of database: 8,860,448
effective search space: 212650752
effective search space used: 212650752
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0592.7