BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590c.9
         (1706 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g20390 hypothetical protein                                       1060  0.0
At2g15410 putative retroelement pol polyprotein                       825  0.0
At3g31530 hypothetical protein                                        568  e-161
At1g37200 hypothetical protein                                        560  e-159
At2g13330 F14O4.9                                                     463  e-130
At2g15100 putative retroelement pol polyprotein                       387  e-107
At2g14400 putative retroelement pol polyprotein                       386  e-107
At2g14380 putative retroelement pol polyprotein                       357  3e-98
At4g03800                                                             325  1e-88
At2g13230 pseudogene                                                  231  3e-60
At2g10780 pseudogene                                                  231  4e-60
At4g10580 putative reverse-transcriptase -like protein                224  3e-58
At2g04670 putative retroelement pol polyprotein                       221  2e-57
At3g11970 hypothetical protein                                        213  8e-55
At1g36590 hypothetical protein                                        213  8e-55
At2g14650 putative retroelement pol polyprotein                       213  1e-54
At2g07660 putative retroelement pol polyprotein                       212  1e-54
At2g06890 putative retroelement integrase                             188  2e-47
At2g13060 pseudogene                                                  184  4e-46
At1g35370 hypothetical protein                                        180  6e-45

>At1g20390 hypothetical protein
          Length = 1791

 Score = 1060 bits (2740), Expect = 0.0
 Identities = 653/1722 (37%), Positives = 934/1722 (53%), Gaps = 144/1722 (8%)

Query: 41   PFSEDVENVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKM----VIIAASDAVKCRMFPS 96
            PF+  + NV+I    K + L+SY+G +DPK+ L  FN  +    + I   DA +C++F  
Sbjct: 156  PFTRRITNVSIRGAQK-IKLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIE 214

Query: 97   TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYM 156
                 A  WF+ L   SI +F   +S FL  ++       +  DL++I Q   ESL+ ++
Sbjct: 215  HLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFV 274

Query: 157  ARYS--AASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMGEMRARASTYILDE 213
             R+     ++ V DE   A  +A +N +         +T     ++ +   RAS +I  E
Sbjct: 275  DRFKLVVTNITVPDE---AAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELE 331

Query: 214  EDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDY 273
            E+     ++    K       V      +D  + +Q       +  KPT   +     D 
Sbjct: 332  EEKLILARKHNSTKTPACKDAVVIKVGPDDSNEPRQHLDRNPSAGRKPTSFLVSTETPD- 390

Query: 274  EQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEA-PKYQPRDANPKKWCEF 332
               +PW               N  + D           D P A P Y          CE+
Sbjct: 391  --AKPW---------------NKYIRD----------ADSPAAGPMY----------CEY 413

Query: 333  HRSAGHDTDDCRTLQREIDKLIRAGYQ-GNRQGQWRNGGDQNKAHKREEERA------DT 385
            H+S  H T++CR LQ     L+ A Y+ G    +       NK  +R E  A       T
Sbjct: 414  HKSRAHSTENCRFLQG----LLMAKYKSGGITIECDRPPINNKNQRRNETTARQYLNDQT 469

Query: 386  KGKKKQESAAIATKGADDTFA--QHSGPPVGT-------INTIAGGFGGGGDTHAARKRH 436
            K     E   I +  ADD  A  Q +G  +         ++ I GG     D+  + K++
Sbjct: 470  KPPTPAEQGIITS--ADDPAAKRQRNGKAIAAEPVVVRQVHVIMGGLQNCSDSVRSIKQY 527

Query: 437  VRAVNSVHEVAFGFV-----HPD----ITISMADFEGIKPHKDDPIVVQLRMNSFNVRRV 487
             +    V  VA+        +P+    I+ +  D EG+    +DP+VV+L ++   V RV
Sbjct: 528  RKKAEMV--VAWPSSTSTTRNPNQSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRV 585

Query: 488  LLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECAR 547
            L+D GSS D+I+ D    + +TD  + P +  L GF G+ VM  G I L    G      
Sbjct: 586  LIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVG----GL 641

Query: 548  VLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMAREC 607
            +  V+++V+   A YNVI+G   ++++ A+ ST H  VK+P                   
Sbjct: 642  IAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPT------------------ 683

Query: 608  YNNCLNFYGKKSALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGT 667
            +N        K A    R YE    +  L       ++   P           R + +G 
Sbjct: 684  HNGIFTLRAPKEAKTPSRSYE----ESELCRTEMVNIDESDPT----------RCVGVGA 729

Query: 668  RLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSVKPVSQLRRRLGGDK 727
             ++      L  LL  N   FAWS +DM GIDP    H L ++P+ KPV Q RR+LG ++
Sbjct: 730  EISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPER 789

Query: 728  GKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWRMCVDYTDLNKACPKDSYPLP 787
             +AV +EV+KLL A  I EVKYP WLAN V+VKK NGKWR+CVDYTDLNKACPKDSYPLP
Sbjct: 790  ARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLP 849

Query: 788  SIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGA 847
             ID LV+  SGN LLS MDA+SGY+QI MH  D++KT+F+T R  YCY+ M FGLKNAGA
Sbjct: 850  HIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGA 909

Query: 848  TYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHSMRLNPEKCSF 907
            TYQR ++++ A Q+GR +EVY+DDM+VKS++  DH + L + F  +  + M+LNP KC+F
Sbjct: 910  TYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTF 969

Query: 908  GVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPQSGDRS 967
            GV  G+FLG+++T RGIE NP++ +AI ++ SP N +EVQRLTGRIAAL+RF+ +S D+ 
Sbjct: 970  GVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKC 1029

Query: 968  FPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDSALSSVM 1027
             PF+  L++   F+W  + EEAF +LK+ LS+PPIL KP  G  L+LY AVSD A+SSV+
Sbjct: 1030 LPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVL 1089

Query: 1028 LQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLPLR 1087
            ++E  GE R +++ S +L  AE RY  IEKAALAV+ +AR+LRPYFQS  + V TD PLR
Sbjct: 1090 VREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPLR 1149

Query: 1088 QVLQKPDLSGRLVAWSVELSEYGLQYDKRGTVGAQSLADFVVELTPDRFERV-----DTQ 1142
              L  P  SGR+  W+VELSEY + +  R  + +Q LADF++EL     ER        +
Sbjct: 1150 VALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE 1209

Query: 1143 WTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKI 1202
            W+L+VDGSS++ GSG G+ L  P   VLEQS +  F ATNN AEYE LIAGL+LA  ++I
Sbjct: 1210 WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQI 1269

Query: 1203 RSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRYLMTLFQEVVVEYVPRAENQRADAL 1262
             ++   TDSQL+  Q+ G ++ K+  +  YL+ V+ +   F+   +  +PR +N  ADAL
Sbjct: 1270 TTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADAL 1329

Query: 1263 AKLASTRKPGNNKSVIQETLAYPSIEG-ELMACVNRGRT-----------WMDPIISILA 1310
            A LA T      + +  E++  PSI+  + +  VN  R+           W   I   L+
Sbjct: 1330 AALALTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLS 1389

Query: 1311 GDPAEVEQCTKEQQR-EASHYTLIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCAS 1369
                  ++ T  + R +A+ YTL+  HL +      +L C+   +   IM E HEG   +
Sbjct: 1390 DGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGN 1449

Query: 1370 HIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAM 1429
            H GGR+LA K+ + GFYWPT+  DC  F  +C++CQ  A     P + L    AP+PF  
Sbjct: 1450 HSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMR 1509

Query: 1430 WGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRA 1489
            W +D+VGP P +R Q +FILV  DYFTKW+EAE  A I +  + NF WK I+CR G+P  
Sbjct: 1510 WAMDIVGPMPASR-QKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYE 1568

Query: 1490 IVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGA 1549
            I++DNG+QF S     FC    I++  ++  +PQ NGQ E+ N+ IL GL++RL E KGA
Sbjct: 1569 IITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGA 1628

Query: 1550 WLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFE--EENQANM 1607
            W DEL  VLWSY TT +S T +TPF   YG++AM P E+   + R     +  E N   M
Sbjct: 1629 WADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELNDRMM 1688

Query: 1608 AVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVLK--WRSGAPGN--KL 1663
               LD L E R+ A  R    +   A  +N +V  R   VGDLVL+  + + A  N  KL
Sbjct: 1689 LDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKL 1748

Query: 1664 TPNWEGPYRIVKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 1705
              NWEG Y++ K++  G Y L  + G  +PR++N + L+ +Y
Sbjct: 1749 GANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  825 bits (2132), Expect = 0.0
 Identities = 464/1115 (41%), Positives = 637/1115 (56%), Gaps = 126/1115 (11%)

Query: 661  RTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPGIDPNFICHRLALNPSVKPVSQLR 720
            R + I   L  E +  L   L +N   FAWS +DMPGID    CH L ++P+ KP+ Q R
Sbjct: 728  RCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKR 787

Query: 721  RRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWRMCVDYTDLNKACP 780
            R+LG D+ K V +EV KLL A  I EV+YP WL N V+VKK NGKWR+C+D+TDLNKACP
Sbjct: 788  RKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACP 847

Query: 781  KDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPF 840
            KDS+PLP ID LV+  +GNELLS MDA+SGY+QI MH  D +KT F+T +  YCY+ MPF
Sbjct: 848  KDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPF 907

Query: 841  GLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHSMRL 900
            GLKNAGATY RL++++F  Q+  +MEVY+DDM+VKS+R  +H   L + F  + +++M+L
Sbjct: 908  GLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKL 967

Query: 901  NPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFL 960
            NP KC+FGV  G+FLG+++T RGIE NP++  AI  + SP N +EVQRL GRIAAL+RF+
Sbjct: 968  NPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFI 1027

Query: 961  PQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSD 1020
             +S D+  PF++ LR N  FEW  +CEE                    G  L+LY AVS 
Sbjct: 1028 SRSTDKCLPFYQLLRANKRFEWDEKCEE--------------------GETLYLYIAVST 1067

Query: 1021 SALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKV 1080
            SA+S V+++E  GE   +++VS TL GAE+RY  +EK A AV+++AR+LRPYF+S+ V+V
Sbjct: 1068 SAVSGVLVREDRGEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEV 1127

Query: 1081 RTDLPLRQVLQKPDLSGRLVAWSVELSEYGLQYDKRGTVGAQSLADFVVELTPDRFERVD 1140
             T+ PLR +L  P  SGRL  W+VELSEY + Y  R               T  +  R  
Sbjct: 1128 LTNQPLRTILHSPSQSGRLAKWAVELSEYDIAYKNR---------------TCAKSHRAP 1172

Query: 1141 TQWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREV 1200
            T+           S     V L               F A+NN+AEYEALIAGL+LA  +
Sbjct: 1173 TR-------PYRRSIPCRKVDLA-------------RFPASNNEAEYEALIAGLRLAHGI 1212

Query: 1201 KIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRYLMTLFQEVVVEYVPRAENQRAD 1260
            +++ +    DSQLV +Q  G ++ K+  +  YL+ VR L   F+   +  +PR++N  AD
Sbjct: 1213 EVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVRELSYNFEVFELTKIPRSDNAPAD 1272

Query: 1261 ALAKLASTRKPGNNKSV-----------IQETLAYPSI---------------------- 1287
            ALA LAST  P   + +           IQ T+  PS                       
Sbjct: 1273 ALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPSEYTVIDLTAEQLSIVMVILPPAT 1332

Query: 1288 --------EGELMACVNRGRT----------------------WMDPIISILAGDPAEVE 1317
                     G L+   + G++                      W++ I S +A      +
Sbjct: 1333 DRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSDSPASTNWIEEIRSYIADRIVPKD 1392

Query: 1318 QCTKEQQREAS-HYTLIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCASHIGGRSL 1376
            +    + R  S  YTL   HL R   +  LL C+  E+ + +M E+HEG   +H GGR+L
Sbjct: 1393 KWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEEAQQVMREIHEGAGGNHSGGRAL 1452

Query: 1377 ACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVG 1436
            A K+ + G YWPT+  DC  FV +C++CQ  A     P + L T   P+PF  W +D++ 
Sbjct: 1453 ALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIPSEVLQTAMPPYPFMRWAMDIIR 1512

Query: 1437 PFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGT 1496
            PFP +R Q K+ILV  DYFTKW EAE  A+I S ++ NF WK I+C  G+P  IV+DNGT
Sbjct: 1513 PFPASR-QKKYILVMTDYFTKWFEAESYARIQSKEVQNFVWKNIICHHGLPYEIVTDNGT 1571

Query: 1497 QFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPA 1556
            QF+S Q   FC +  I++  ++  +PQ NGQ E+ N+ IL GL++RL E KGAW DEL  
Sbjct: 1572 QFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRLDEKKGAWADELDG 1631

Query: 1557 VLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEE--NQANMAVELDLL 1614
            VLWSY TT + +T  TPF +TYG++A+ P E    T R      +   N   +   LD L
Sbjct: 1632 VLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDTL 1691

Query: 1615 SETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVLKW----RSGAPGNKLTPNWEGP 1670
             E RD+A +R    +Q  A  +N +V+ R    GDLVL+            KL  +WEGP
Sbjct: 1692 EEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGP 1751

Query: 1671 YRIVKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 1705
            Y I KV+  G Y L  +DG  +PRS+N  +L+ +Y
Sbjct: 1752 YLISKVVKPGVYELLTMDGTPIPRSWNSANLKRYY 1786



 Score = 67.4 bits (163), Expect = 7e-11
 Identities = 122/566 (21%), Positives = 200/566 (34%), Gaps = 120/566 (21%)

Query: 32  EADSVAEFR---PFSEDVENVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASD- 87
           E D V E     PF+  + +V I  ++  + L +Y G  DP+  L   +  +     SD 
Sbjct: 225 EVDKVLEETQRSPFTSCISDVRIR-HISKIKLANYEGLVDPRPFLTSVSIAIGRAHFSDE 283

Query: 88  ---AVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNI 144
              A  C++F       A+ WF+ L   SI +    ++ FL  +     +  +  DL+ +
Sbjct: 284 DRDAGSCQLFVKHLSGAALTWFSRLEANSIDSVHALTTSFLKNYGVFMEKGASNVDLWTM 343

Query: 145 RQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTR-KPARSMGEMR 203
            Q   ESL+ ++ R+      V   +  A A A +N L  G  +   T  KP    G  +
Sbjct: 344 AQTAKESLRSFIGRFKEIVTSVATPDDAAIA-ALRNALWHGDSSRCTTLCKPFHRQGSAK 402

Query: 204 ARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTK 263
           A  +              + K ++G        + R   D    K+++  KG S +    
Sbjct: 403 APIA--------------KEKPKEGH------HESRQHYDADYAKEEKLKKGTSYYVGDT 442

Query: 264 EQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYQPRD 323
               PR D     +PW   +     + D                                
Sbjct: 443 A---PRSD-----KPWNKWNRSADAKGD-------------------------------- 462

Query: 324 ANPKKWCEFHRSAGHDTDDCRTLQREIDKLIRAGYQGNRQGQWRNG-GDQNKAHKREE-- 380
              +K+ EFH+  GH TD+CR LQ  +    + G       + R G  D++  H+R E  
Sbjct: 463 ---QKYYEFHKIPGHSTDECRQLQTLLLTKFKKGDLDIEPDRRRTGTNDRDNTHRRVENT 519

Query: 381 ERADTKGKKKQESA-------------AIATKGADDTFAQHSGPPVG--TINTIAGGFGG 425
           +R +   K++Q+               A   K   D   Q    P      N I GG   
Sbjct: 520 DRDNQDDKRRQDETDRRAERIHDDDRRAEPHKRNHDAPRQFEDEPASKRRRNMIMGGLTA 579

Query: 426 GGDTHAARKRHVRAVNSVH-----EVAFGFVHPDITISMADFEGIKPHKDDPIVVQLRMN 480
             D+  + K + R             +    +  IT S AD   +    +DP+VV+L++ 
Sbjct: 580 CRDSVRSIKSYRRQGEKQRAWIEKNTSAVECNEPITFSEADI-ALPGSHNDPLVVELKIG 638

Query: 481 SFNVRRVLLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAGEQVMVRGYIDLDTIF 540
              + ++ +D  S  D +                     L GF G+ +M  G I L    
Sbjct: 639 ENVLLQLEIDVRSFQDKVQ-------------------PLTGFDGDTIMTVGTITLPIYV 679

Query: 541 GEDECARVLKVRYLVLQVVASYNVII 566
           G      V    + V+     YNVI+
Sbjct: 680 G----GTVSWFEFAVVDKPIIYNVIL 701


>At3g31530 hypothetical protein
          Length = 831

 Score =  568 bits (1463), Expect = e-161
 Identities = 332/839 (39%), Positives = 476/839 (56%), Gaps = 105/839 (12%)

Query: 799  NELL--SLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRV 856
            N+LL  S   +++ +  + M+P D++KTAF T +  +CYR MPFGLKNAGATY+R ++++
Sbjct: 77   NQLLETSYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKI 136

Query: 857  FAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLG 916
            FA Q+G+ MEVY+DDM+VKS+   DH   L E F ++  ++++LNP KC FGV+ G    
Sbjct: 137  FALQIGKTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRSG---- 192

Query: 917  FMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPQSGDRSFPFFKCLRK 976
                   IE NP++ +A+  M SP N +EVQ LTGR+AAL+RF+ +S ++   F+  LR+
Sbjct: 193  -------IEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRR 245

Query: 977  NVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDSALSSVMLQEIDGEHR 1036
            N  FEWT  CEEAF  LK+ L++PPIL+KP+ G P +LY AVSD+A+S  +++E  GE +
Sbjct: 246  NKKFEWTTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK 305

Query: 1037 IVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLPLRQVLQKPDLS 1096
            ++++VS T   AE RY ++EK ALAV+++A++LRPYFQS  + V   +PLR +L  P  S
Sbjct: 306  LIFYVSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSMPLRVILHSPSQS 365

Query: 1097 GRLVAWSVELSEYGLQYDKRGTVGAQSLADFVVELTPD--RFERVDTQWTLFVDGSSNSS 1154
            GRL  W++ELSEY ++Y  +    +Q LADF+VEL     R   +DT W L VDGSS+  
Sbjct: 366  GRLAKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEARENPLDTTWLLHVDGSSSKQ 425

Query: 1155 GSGAGVTLEGP-GELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQL 1213
            GSG G+ L  P GE            ATNN AEYEAL+AGL LA  +KI       DSQL
Sbjct: 426  GSGVGIRLTSPTGE------------ATNNVAEYEALVAGLNLAWGLKIGKTRAFCDSQL 473

Query: 1214 VENQVKGTFQVKDPNLIKYLERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGN 1273
            + NQ  G +  +D  +  YL  V+ L   F E  +  +PR EN  ADALA LAST     
Sbjct: 474  IANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAALASTSDTSL 533

Query: 1274 NKSVIQETLAYPSIEGELMACV-------------NRGRTWMDPIISILA-GDPAEVEQC 1319
             + +  E +  PSIE      V             +    WM+PIIS ++ G     +  
Sbjct: 534  KRVIPVEFIEKPSIELGKEEHVLPIQISADQDDPDDCNSEWMEPIISYISEGKLPSDKWK 593

Query: 1320 TKEQQREASHYTLIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCASHIGGRSLACK 1379
             ++ + +A+ + L+D  LY+   S PL+ CV  E    IM E+H G   SH         
Sbjct: 594  ARKLKAQAARFVLVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHSG---SHA-------- 642

Query: 1380 VLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFP 1439
                    PT+ +                     P + L ++++P+PF  W +D++GP  
Sbjct: 643  --------PTIHQ---------------------PAELLSSIASPYPFMRWSMDIIGPMH 673

Query: 1440 TARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFS 1499
             ++ Q K +LV  DYF+KWIEAE  A I  A++ NF  K I+CR GIP  IV+DNG+QF 
Sbjct: 674  PSK-QKKLVLVLTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFI 732

Query: 1500 SSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLW 1559
            S++ + FC + GI++  ++  +PQ NGQ E+AN                    EL  VLW
Sbjct: 733  STRFQGFCDKWGIRLSKSTPRYPQGNGQAEAAN--------------------ELEGVLW 772

Query: 1560 SYNTTEQSTTRETPFRMTYGVDAMLPVE--IDNFTWRTRPGFEEENQANMAVELDLLSE 1616
             + TT +  TRETPF   YG + ++P E  + +      P  + +N      ELDL+ E
Sbjct: 773  LHRTTPRRATRETPFASIYGTECVIPAEMIVPSLRRSLSPENDPDNTQTPLDELDLIDE 831



 Score = 35.8 bits (81), Expect = 0.22
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 562 YNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARECYNNCL 612
           YN IIG   LN+  AV ST HL +K+P S     KL  ++  A +  N  L
Sbjct: 30  YNAIIGTPWLNQFRAVASTYHLCLKFPTSDSVWEKLGHERAEAVKAENQLL 80


>At1g37200 hypothetical protein
          Length = 1564

 Score =  560 bits (1444), Expect = e-159
 Identities = 433/1463 (29%), Positives = 665/1463 (44%), Gaps = 272/1463 (18%)

Query: 124  FLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGL- 182
            FL Q S    Q  +  DL+++   + ES + Y+ ++ A   K+ +        A +NGL 
Sbjct: 176  FLKQDSVLIEQRTSEADLWSLTLLQNESHRSYVEKFKAIKSKIANLNEEVAIAALRNGLW 235

Query: 183  LPGGLNSKLTRKPARSMGEMRARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGE 242
                   +LT +   S+ +   +A  +   EE+ A    + K  K   +P  +       
Sbjct: 236  FSSRFREELTVRQPISLDDALHKALHFAKGEEELAVLALKFKESKTQNAPLAI------- 288

Query: 243  DKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDML 302
                                             + P++ ++  Q + T   +     D  
Sbjct: 289  ---------------------------------KTPFKKENQTQGQHTLFAIEEAAED-- 313

Query: 303  RGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCRTLQREIDKLIRAGYQGNR 362
                        E+P     + +  K+C++H   GH T++CR ++    KLI AG +  +
Sbjct: 314  ------------ESP-----ELDLGKYCKYHNKRGHSTEECRAVK----KLIAAGGKTKK 352

Query: 363  QGQWRNGGDQNKAHKREEERADTKGKKKQESAAIATKGADDTFAQHSGPPVGT--INTIA 420
                   G   K      +  + +   KQ+      +G D      S PP     I+ + 
Sbjct: 353  -------GSNPKVETPPPDEQEEEQTPKQKKRERTLEGGD------SPPPARRERIDLVF 399

Query: 421  GGFGGGGDTHAARKRHVRAVNSV-HEVAFGFVHPDITISMADFEGIKPHKDDPIVVQLRM 479
                 GG T     R V    S  H+    F         +  E + P + D I+   ++
Sbjct: 400  TELDLGGKTG----RSVTTPPSAPHKKNMRFPLRLSKFCRSATEHLSPKRIDFIMGGSQL 455

Query: 480  NSFNVRRVLLDQGSSADIIYGDAF-----DKLGLTDNDLTPYAGTLVGFAGEQVMVRGYI 534
             + ++  +   Q  +     G +       K+ L +++ T                    
Sbjct: 456  CNDSINSIKTHQRKADSYTKGKSLMMGPDHKITLWESETT-------------------- 495

Query: 535  DLDTIFGEDECARVLKVRYLVLQVV---------ASYNVIIGRNTLNRLCAVISTAHLAV 585
            DLD    +    R+    Y + +++         A +N I+GR  L+ + AV ST H  +
Sbjct: 496  DLDKPHDDAIVIRIDVGNYKLSRIMIDTGSSVDKAPFNAILGRPWLHAMKAVPSTYHQCI 555

Query: 586  KYPLSSGKVGKLKVDQKMARECYNNCLNFYGKKSALVGHRCYEIEASDENLDPRGEGRVN 645
            K+P   G +  +   Q+ +R CY        KK+ LV      +   ++ L      R +
Sbjct: 556  KFPSEKG-IAVIYGSQRSSRRCYMGSYELI-KKAELV------VLMIEDKLAEMKTVRSS 607

Query: 646  RPT---PIEETKALKFGDRT-----LKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPG 697
             P+   P + +    + D +     + +G  L           L EN D FAWS  ++ G
Sbjct: 608  DPSQCGPQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQG 667

Query: 698  IDPNFICHRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVV 757
            I      H L ++P+ +P+ Q RR+LG ++ KAVQ EVD+LL    IREVKYP WLAN V
Sbjct: 668  ISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPV 727

Query: 758  MVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMH 817
            +VK  NGKWR+C+D+ DLNKACPKDS+PLP ID LV   +G+ELLS MDA+SGY+QI M 
Sbjct: 728  VVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMR 787

Query: 818  PADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSV 877
            P D++KTAF+T     CY+ MPFGLKN GATYQRL++R+FA Q+G+ ME+Y+DDM+VKS 
Sbjct: 788  PDDQEKTAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSA 843

Query: 878  RGLDHHQDLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQM 937
               DH   L E F  + K  M+                          +NPEKC      
Sbjct: 844  HEKDHLPQLRECFKILNKFEMK--------------------------LNPEKCS----F 873

Query: 938  KSPSNVKEVQRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELL 997
              PS              L   + Q G  + P      K +A         AF+   ++ 
Sbjct: 874  GVPSG-----------EFLGYLVTQRGIEANP------KQIA---------AFI---DMP 904

Query: 998  SSPPILSKPIQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEK 1057
            S      +P +     +Y A  D           +G+ + +Y+VS TL  AE  Y+ +EK
Sbjct: 905  SPKMARDRPYRRPQQVIYRAPPDH----------EGQ-KPIYYVSKTLIDAETHYRAMEK 953

Query: 1058 AALAVLVTARRLRPYFQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYGLQYDKRG 1117
             ALAV+++AR+LR Y QS P+ V T  P+R +L     S RL  W++ELSEY ++Y  R 
Sbjct: 954  LALAVVMSARKLRQYLQSHPIVVMTSQPIRTILHSTTQSSRLAKWAIELSEYDIEYRTRT 1013

Query: 1118 TVGAQSLADFVVELTPDRFERVDT--QWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLK 1175
            +  AQ LADFV+EL     +  ++  +W L VDGSSN  GSG G+ L  P   V+EQS +
Sbjct: 1014 SFKAQVLADFVIELPLADLDGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFR 1073

Query: 1176 FEFKATNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLER 1235
              F A+NN++EYEALI G+KLA+ ++IR +   +DSQLV +Q  G ++ KD  +  YLE 
Sbjct: 1074 LGFNASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLEL 1133

Query: 1236 VRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE------- 1288
            V+ L   F+   +  +PR EN   DALA LAST  P   + +  E + +PSI+       
Sbjct: 1134 VKTLTQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIPVEGIEHPSIDLTVKHAG 1193

Query: 1289 --------------------GELMACVNRG----------------------RTWMDPII 1306
                                  L A    G                        W  PII
Sbjct: 1194 METSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPII 1253

Query: 1307 S-ILAGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEG 1365
              I  G     +  T++ + +++ Y +++G L +R  + P + C   ++ + +M  +HEG
Sbjct: 1254 DYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEG 1313

Query: 1366 VCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPW 1425
             C SH  GR+L C +L           DC+    +C +CQ  A     PP+E+ ++S+P+
Sbjct: 1314 QCGSHYSGRTLRCIML----------ADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPY 1363

Query: 1426 PFAMWGVDLVGPFPTA--RAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCR 1483
            PF  W +D+V P   +  + ++K +LV  DY TKWIE +   ++T  ++  F  + IV R
Sbjct: 1364 PFMKWSMDVVRPMEASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYR 1423

Query: 1484 FGIPRAIVSDNGTQFSSSQTREF 1506
             GIP  IV+DNG      +++ F
Sbjct: 1424 HGIPYEIVTDNGLTSPREKSKHF 1446



 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 1612 DLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVLKW----RSGAPGNKLTPNW 1667
            D + E RD A I+    +Q     +NS +++R  +VG+LVL+            KL  NW
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524

Query: 1668 EGPYRIVKVLGNGAYHLEEL-DGRRLPRSFNGLSLRYFY 1705
            EGPYRI +V+ +G Y L ++ +G    R +N + L+ ++
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKYH 1563


>At2g13330 F14O4.9
          Length = 889

 Score =  463 bits (1192), Expect = e-130
 Identities = 244/528 (46%), Positives = 333/528 (62%), Gaps = 32/528 (6%)

Query: 763  NGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADED 822
            NGKWR+C+D+ DLNKACPKDS+PLP ID LV+    +E LS MDA+ GY+QI M    ++
Sbjct: 291  NGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDGQE 350

Query: 823  KTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDH 882
            KTAF+T R  Y Y+ MPFGLKNAG TYQRL++R+F  Q+G+ +EVY+DDM+VKS    DH
Sbjct: 351  KTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEKDH 410

Query: 883  HQDLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSN 942
               L E F  + K  M+LNPEKCSF VQ  +FL +++T RGIE NP++  A  +M SP  
Sbjct: 411  VPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSPKM 470

Query: 943  VKEVQRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPI 1002
             +EVQRLTGRI AL+ F+ +S ++  PF++ LRK   F+W  +CE+AF +LK  L+ PPI
Sbjct: 471  AREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEPPI 530

Query: 1003 LSKPIQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAV 1062
            L+KP +G PL+LY                                 + R   +EK AL V
Sbjct: 531  LAKPEKGEPLYLY------------------------------TNRDKRCPAMEKLALTV 560

Query: 1063 LVTARRLRPYFQSFPVKVRTDLPLRQVLQKPDLSGRLVAWSVELSEYGLQYDKRGTVGAQ 1122
            +++ R+LR YFQS P+ V T  P+R +L     SGRL  W++EL EY ++Y  R ++ AQ
Sbjct: 561  VMSVRKLRLYFQSHPIVVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRTSLKAQ 620

Query: 1123 SLADFVVELTPDRFERVDT--QWTLFVDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKA 1180
             LADFV++L     +  ++  +W L VDGSSN  GSG G+ L  P   V+EQSL+  F A
Sbjct: 621  VLADFVIKLPLADLDGTNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNA 680

Query: 1181 TNNQAEYEALIAGLKLAREVKIRSLLIRTDSQLVENQVKGTFQVKDPNLIKYLERVRYLM 1240
            +NN++EYEALIAG+KLA+E  IR +   +DSQLV +Q  G ++ KD  +  YLE V+ L 
Sbjct: 681  SNNESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLA 740

Query: 1241 TLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE 1288
              F+   +  +PR EN  AD LA LAST  P   + +  E + + SI+
Sbjct: 741  QQFESFKLTRIPRGENTSADTLAALASTSDPFVKRIIPVEGIEHTSID 788



 Score = 88.2 bits (217), Expect = 4e-17
 Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 21/241 (8%)

Query: 466 KPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDNDLTPYAGTLVGFAG 525
           KPH DD +V+++ + ++ +  +++D GSS D+++ DAF + G  D+ L      L GFAG
Sbjct: 59  KPH-DDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQGRKTPLTGFAG 117

Query: 526 EQVMVRGYIDLDTIFGEDECARVLK--VRYLVLQVVASYNVIIGRNTLNRLCAVISTAHL 583
           +     G I L TI      AR ++    +LV+   A +N I+GR  L+ + AV ST H 
Sbjct: 118 DTTFSIGTIQLPTI------ARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKAVPSTYHQ 171

Query: 584 AVKYPLSSGKVGKLKVDQKMARECYNNCLNFYGKKSALVGHRCYEIEASD----ENLDPR 639
            +K+P   G +  +   Q+ +R+CY        K   +V     E E ++     +LDP 
Sbjct: 172 CIKFPSYKG-IAVVYGSQRSSRKCYMGSYEDIKKADPVV--LMIEDELAEMKTVRSLDPS 228

Query: 640 GEGRVNRPTPIEETKALKFGD--RTLKIGTRLTEEQETRLTKLLGENLDLFAWSCKDMPG 697
             G   R + I +   +   D  R + IG  L       L   L EN D FAWS  ++ G
Sbjct: 229 QRG--TRKSLITQV-CIDESDPKRCVGIGHDLDLTVREDLITFLKENKDSFAWSSANLQG 285

Query: 698 I 698
           I
Sbjct: 286 I 286


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  387 bits (995), Expect = e-107
 Identities = 255/763 (33%), Positives = 379/763 (49%), Gaps = 75/763 (9%)

Query: 968  FPFFKCLRK-NVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDSALSSV 1026
            FPF     K +  F W   CEEAF +LK  LS P +L+K   G  L LY AVS+SA++ V
Sbjct: 616  FPFLHFTAKISKGFIWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGV 675

Query: 1027 MLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTDLPL 1086
             ++    + R +++V       + RY  +EK ALAV+  AR+LRPYFQS P+ V T LPL
Sbjct: 676  QVRVERSDKRPIFYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSLPL 728

Query: 1087 RQVLQKPDLSGRLVAWSVELSEYGLQYDKRGTVGAQSLADFVVELTPDRFERVDTQWTLF 1146
            R +L  P  SGRL  W++ELSE+ L++  R ++ +          T D       QW   
Sbjct: 729  RTILHSPTQSGRLGKWAIELSEFDLEFRARTSLNS----------TMD----TSRQWGFI 774

Query: 1147 VDGSSNSSGSGAGVTLEGPGELVLEQSLKFEFKATNNQAEYEALIAGLKLAREVKIRSLL 1206
                 + + S A       GE                +A+   + A L L REV  R   
Sbjct: 775  KTWVRSRNLSDAPTANRYSGEY---------------EAKDACMEAYLNLVREVSGRFEQ 819

Query: 1207 IR-TDSQLVENQVKGTFQVKDPNLIKYLERVRYLMTLFQEVV----VEYVP-RAENQRAD 1260
               T     EN                L RV  + T+ Q  +    + +V  RA  +R D
Sbjct: 820  FELTRIPRAENSAANALAALASTFEVTLPRVIPVETISQPSIRLDEISFVTTRAMRRRLD 879

Query: 1261 ALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVNR-----------GRTWMDPIIS-I 1308
            A +      + G+++ +         +E + +   +            G  W +PI   I
Sbjct: 880  AQSAENGLHQLGDDEEISDAVHPTEIVENQSLPDNHNAPLPDQPPHDWGADWREPIRDYI 939

Query: 1309 LAGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCA 1368
            L G     +   ++ +   + + + +  LYRR FS P   C+  E+   +M EVH+G C 
Sbjct: 940  LNGTLPAEKWAARKLKATCARFCIANDILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCG 999

Query: 1369 SHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFA 1428
            +H GGRSLA KV + G+YWPTL  DC  + ++C++CQ  A L   P + L T+SAP+PF 
Sbjct: 1000 NHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFM 1059

Query: 1429 MWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPR 1488
             W +D+VGP   +              T+ +EA   + IT  ++ NF WK I+CR G+P 
Sbjct: 1060 KWLMDIVGPLHVS--------------TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPY 1105

Query: 1489 AIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKG 1548
             IV+DNG+QF S Q   FC+E  I++  ++  +PQ NGQ E+ N+ I+  L+++L   KG
Sbjct: 1106 EIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKG 1165

Query: 1549 AWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWR--TRPGFEEENQAN 1606
            AW  EL  VLW+  TT +  T ETPF + YG++A++P EI   + R    P  E EN   
Sbjct: 1166 AWFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENNEM 1225

Query: 1607 MAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVLKW----RSGAPGNK 1662
            +   +D + E R+ A  R        A  +NS VR R  +VG LVL+     ++     K
Sbjct: 1226 IIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGK 1285

Query: 1663 LTPNWEGPYRIVKVLGNGAYHLEELDGRRLPRSFNGLSLRYFY 1705
            L  +WEGPY+I  V+ NG Y L  ++G+ + R++N + L+ FY
Sbjct: 1286 LGISWEGPYKITHVVRNGVYRLINMEGKTVRRAWNSMHLKRFY 1328



 Score =  188 bits (477), Expect = 3e-47
 Identities = 90/151 (59%), Positives = 113/151 (74%)

Query: 695 MPGIDPNFICHRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLA 754
           M GI    I H L ++P+ KPV Q RR+LG D+ +AV  EV +LL    IREVKYP WLA
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471

Query: 755 NVVMVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQI 814
           N V+VKK NGKWR+CVD+TDLNKAC KD +PLP ID LV+  +G+E+LS MDA+SGY+QI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531

Query: 815 RMHPADEDKTAFMTARVNYCYRTMPFGLKNA 845
            M+P D++KT+F+T    Y Y+ MPFGLKNA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562



 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 39/126 (30%), Positives = 58/126 (45%), Gaps = 13/126 (10%)

Query: 41  PFSEDVENVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAA--------SDAVKCR 92
           PF+  +  + I +  +   L  Y+G  D K+HL  F     +IA          DA  C+
Sbjct: 157 PFTPRISKLRIRE-FRDFKLPVYNGKGDLKEHLTSFQ----VIAGRVPLEPHEEDAGLCK 211

Query: 93  MFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESL 152
           +F       A+ WFT L  GSI NF+  S+ F+ Q+    N  +T   L+N  Q   E L
Sbjct: 212 LFSENLFGLALTWFTQLEEGSIDNFKQLSTAFIKQYEYFINSDITEAHLWNFSQSADEPL 271

Query: 153 KEYMAR 158
           + Y+ R
Sbjct: 272 RTYIYR 277



 Score = 34.3 bits (77), Expect = 0.64
 Identities = 19/47 (40%), Positives = 25/47 (52%)

Query: 548 VLKVRYLVLQVVASYNVIIGRNTLNRLCAVISTAHLAVKYPLSSGKV 594
           V  V + V    A+YNVI+G   L  +  V ST H  VK+P   GK+
Sbjct: 366 VKMVEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKM 412


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  386 bits (992), Expect = e-107
 Identities = 182/322 (56%), Positives = 245/322 (75%)

Query: 720  RRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKWRMCVDYTDLNKAC 779
            RR+LG ++ KAV  EVDKLL    IREV+YP WLAN V+VKK NGK R+C+D+TDLNKAC
Sbjct: 469  RRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKAC 528

Query: 780  PKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMP 839
            PKDS+PLP ID LV+  +GNELLS MDA+SGY+QI M+P D++KT F+T R  YCY+ MP
Sbjct: 529  PKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMP 588

Query: 840  FGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHSMR 899
            FGL+NAGATY RL++++F+  VG+ MEVY+DDM++KS++  DH + LEE F  + ++ M+
Sbjct: 589  FGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMK 648

Query: 900  LNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRF 959
            LNP KC+FGV  G+FLG+++T RGIE NP +  A   M SP N KEVQRLTGRIAAL+RF
Sbjct: 649  LNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRF 708

Query: 960  LPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVS 1019
            + +S D+S PF++ L+ N  F W  +CEEAF +LK  L+SPP+L KP     L+LY +VS
Sbjct: 709  ISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVS 768

Query: 1020 DSALSSVMLQEIDGEHRIVYFV 1041
            + A+S V+++E  GE + +Y++
Sbjct: 769  NHAVSGVLIREDRGEQKPIYYI 790



 Score =  278 bits (711), Expect = 2e-74
 Identities = 178/548 (32%), Positives = 273/548 (49%), Gaps = 94/548 (17%)

Query: 1202 IRSLLIRTDS-------QLVENQVKGTFQVKDPNLIKYLERVRYLMTLFQEVVVEYVPRA 1254
            +  +LIR D         ++ NQ  G ++ KD  +  YL  V+ L   F++  +  +PR 
Sbjct: 772  VSGVLIREDRGEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRG 831

Query: 1255 ENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACV---------NRGRTWMD-P 1304
            +N  ADALA LAST  P  N  +  E ++  SI+ E  A V         +RG T ++ P
Sbjct: 832  QNTTADALAALASTSDPEVNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELP 891

Query: 1305 IISILAGDPAEV--------------EQCTKEQQREASHYTLID---------------G 1335
             +       A V              E+   + + EA     +D                
Sbjct: 892  PVKRRKSKEATVPKPAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALN 951

Query: 1336 HLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCM 1395
             LYRRG S P L  +     E +MSEVHEG+C SH  GR++A K+ +  +YWPT+  DC+
Sbjct: 952  SLYRRGVSDPYLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCV 1011

Query: 1396 DFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYF 1455
             + ++CK CQ+ A L   P +   ++SAP+PF  W +D++GP   +   ++++LV  DYF
Sbjct: 1012 KYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLHRSTRGVQYLLVLTDYF 1071

Query: 1456 TKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMR 1515
            +KWIEAE +       ++N+                                   GI++ 
Sbjct: 1072 SKWIEAEAI-------LLNW-----------------------------------GIKVS 1089

Query: 1516 FASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFR 1575
            ++++ +PQ NGQ E+AN+ IL  L++RL   KG W DEL  VLW+Y TT + +T ETPF 
Sbjct: 1090 YSTLRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFS 1149

Query: 1576 MTYGVDAMLPVEID--NFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVA 1633
            + YG+ A++P E++         P  E+EN A +   LD ++E RD+A I+    +   A
Sbjct: 1150 LVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAA 1209

Query: 1634 AKFNSRVRVRDMQVGDLVLKW----RSGAPGNKLTPNWEGPYRIVKVLGNGAYHLEELDG 1689
              +NS+V+ R   VGD VLK     +      KL  NWEGPY + +V+ NG Y L++L+ 
Sbjct: 1210 RYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLED 1269

Query: 1690 RRLPRSFN 1697
            R + R +N
Sbjct: 1270 RPVQRPWN 1277



 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 62/234 (26%), Positives = 111/234 (46%), Gaps = 20/234 (8%)

Query: 41  PFSEDVENVAIPDNMKTLVLDSYSGDSDPKDHLLYFNTKMVII----AASDAVKCRMFPS 96
           PF+  + ++ I D+ K L L+SY+G  DPK +L  F      +    A  D   C++F  
Sbjct: 144 PFTPQITSLRIRDSRK-LNLESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSE 202

Query: 97  TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYM 156
                A+ WFT L  GSISNF + S  FL Q+S   ++ ++  DL+N+ Q   E+L+ ++
Sbjct: 203 NLCGQALMWFTQLEPGSISNFNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFI 262

Query: 157 ARYSAASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMGEMRARASTYI-LDEE 214
            ++     K+     ++   A + GL         L      ++ +   RA+ ++ +++E
Sbjct: 263 TKFKYVLSKLSRISQQSALSALRKGLWYDSRFKEDLILHKLDTIQDALFRANNWMEVEDE 322

Query: 215 DDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGK-----------QQRPGKGKS 257
            ++F ++  + +   T P   KK    E++G  K           +Q  GKG+S
Sbjct: 323 KESFAKRDKQAKPAVTFPP--KKFEPRENQGPRKFGLLPFNNNVGKQFQGKGRS 374



 Score = 43.5 bits (101), Expect = 0.001
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 379 EEERADTKGKKKQESAAIATKGADDTFAQHSGP-PVGTI---NTIAGGFGGGG------- 427
           E+E+     + KQ   A+          ++ GP   G +   N +   F G G       
Sbjct: 320 EDEKESFAKRDKQAKPAVTFPPKKFEPRENQGPRKFGLLPFNNNVGKQFQGKGRSNTWIR 379

Query: 428 DTHAARKRHVRAVNSVHEVA--FGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVR 485
           D  +  K+H R V+    ++    F    I     + + ++   DD +VV L + +F V 
Sbjct: 380 DESSVIKKHSRNVHLKLSLSEEVDFQSTSILFDEKETQHLERSHDDALVVTLDVANFEVS 439

Query: 486 RVLLDQGSSADIIYGDAFDKLGLTDNDL 513
           R+L+D GSS D+I+    +++G++  D+
Sbjct: 440 RILIDTGSSVDLIFLSTLERMGISRADV 467


>At2g14380 putative retroelement pol polyprotein
          Length = 764

 Score =  357 bits (917), Expect = 3e-98
 Identities = 170/289 (58%), Positives = 219/289 (74%), Gaps = 1/289 (0%)

Query: 694 DMPGIDPNFICHRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWL 753
           DM GIDP   CH L ++P+ K V Q RR+LG ++ KAV  EVDKLL A  I EVKYP WL
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535

Query: 754 ANVVMVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQ 813
           AN V+VKK N KWR+C+D+TDLNKACPKDS+PLP ID +V+  +GNELLS MDA+SGY+Q
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595

Query: 814 IRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMI 873
           I MH  D++KT+F+  R  YCY+ MPFGLKN GA YQRL++++FA Q+G+ MEVY+DDM+
Sbjct: 596 IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655

Query: 874 VKSVRGLDHHQDLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKA 933
           VKS R  DH   L+  F  + K++M+LNP KC FGV  G+FLG+++T RGIE NP++ +A
Sbjct: 656 VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715

Query: 934 IQQMKSPSNVKEVQRLTGRIAALSRFLPQSGDRSFPFFKCLRK-NVAFE 981
           I  ++SP N KEVQRLTGRIA L+RF+ +S D+S PF++ LR  N  FE
Sbjct: 716 ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLRSANKTFE 764



 Score = 98.6 bits (244), Expect = 3e-20
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 34/335 (10%)

Query: 295 NTDVSDMLRGASDANLVDEPEAPKYQPRDANPK----KWCEFHRSAGHDTDDCRTLQR-- 348
           NTD    L   S A   D      + P +A  +    ++C+FH+ +GH T  CR LQ   
Sbjct: 153 NTDPQQFLSSFSVATQRDH-----FHPSEAEVENRLDQYCDFHKRSGHSTAACRHLQSIL 207

Query: 349 -------EIDKLIRAGYQGNRQGQWRNGGDQNKA------HKREEERADTKGKKKQESAA 395
                  +I+   R     N     R G D N        H   ++ A    ++++    
Sbjct: 208 LNKYKKGDIEVQHRQYKSHNNTYAARGGRDGNNVFHRLGPHTGRQQEAPPANEEERHPDM 267

Query: 396 IATKGADDTFAQHSGPPVGT--INTIAGGFGGGGDTHAARKRHVR--AVNSVHEVAFGFV 451
              K   +   QH+  PV    +N I GG     D+  + K +++  A       A   +
Sbjct: 268 EPPKKNRENDQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKEM 327

Query: 452 HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTDN 511
            P +T +  D  G+    +DP+V++L +    V R+L+D GSS ++++ D   K+ + D 
Sbjct: 328 TP-LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDR 386

Query: 512 DLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNTL 571
            + P    L GF G  +M  G I L    G          +++V+     YN+I+G   +
Sbjct: 387 HIKPSVRPLTGFDGNTMMTNGTIKLPIYLG----GAATWHKFVVVDKPTIYNIILGTPWI 442

Query: 572 NRLCAVISTAHLAVKYPLSSGKVGKLKVDQKMARE 606
           + + A+ S+ H  +K P S G +  ++ +Q +A +
Sbjct: 443 HDMQAIPSSYHQCIKIPTSIG-IETIRGNQNLAHD 476


>At4g03800
          Length = 637

 Score =  325 bits (833), Expect = 1e-88
 Identities = 165/336 (49%), Positives = 230/336 (68%), Gaps = 21/336 (6%)

Query: 695  MPGIDPNFICHRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLA 754
            MP IDP+ ICH L ++P  KP+ Q RR+LG ++ KAV  ++DKLL    IREV+YP W+A
Sbjct: 321  MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380

Query: 755  NVVMVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQI 814
              V+VKK NGK R+C+D+TDLNKACPKDS+PLP ID LV+  +GNELL+ MDA+ GY+QI
Sbjct: 381  ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440

Query: 815  RMHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIV 874
             M+P D++KT+F+T R               GATYQ L++++F   + + MEV +DD +V
Sbjct: 441  MMNPEDQEKTSFITDR---------------GATYQWLVNKMFNEHLRKTMEVSIDDTLV 485

Query: 875  KSVRGLDHHQDLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAI 934
            KS++  DH + L E F  + ++ M+LN  KC+FGV  G+FLG+++T RGIE NP +  A 
Sbjct: 486  KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545

Query: 935  QQMKSPSNVKEVQRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLK 994
             +  S  N KEVQRLTGRIA+      +S D+S PF++ L+ N  F W  +CEEAF +LK
Sbjct: 546  LKTPSLRNFKEVQRLTGRIAS------RSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599

Query: 995  ELLSSPPILSKPIQGHPLHLYFAVSDSALSSVMLQE 1030
              L++PP+LSKP     L+LY  VS+ A+S V+++E
Sbjct: 600  AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRE 635



 Score = 63.9 bits (154), Expect = 8e-10
 Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 37/262 (14%)

Query: 334 RSAGHDTDDCRTLQREIDKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKKKQES 393
           R   H T DC  L+R + +L  +G          N  D  K +    + ++T+  K+   
Sbjct: 77  RVTEHLTKDCIVLKRYLAELWASGDLSKF-----NIDDFVKQYHEARDNSETQNSKRPRL 131

Query: 394 AAIATKGADDTFAQHSGPPVGTINTIAGGFGGGGDTHAARKRH---VRAVNSVHEVAFGF 450
                     T  +      G IN I GG     ++ +A K+H   V   +S+ E    +
Sbjct: 132 ----------TNEEEPRSSKGKINVILGGSKLCHNSVSAIKKHRPNVLLKSSLSEEV-NY 180

Query: 451 VHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQGSSADIIYGDAFDKLGLTD 510
               ++    +   I+   DD +++ L + +F + R+L+D GSS D+I+           
Sbjct: 181 QCSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLIF----------- 229

Query: 511 NDLTPYAGTLVGFAGEQVMVRGYIDLDTIFGEDECARVLKVRYLVLQVVASYNVIIGRNT 570
             L P    LV F  E  M  G I L  + G  + +++  V ++V    A+YN+I+G   
Sbjct: 230 --LGP-PSPLVAFTSESAMSLGTIKLPVLAG--KMSKI--VDFVVFDKPATYNIILGTPW 282

Query: 571 LNRLCAVISTAHLAVKYPLSSG 592
           + ++ AV ST H  +K+P S+G
Sbjct: 283 IFQMKAVPSTYHQWLKFPTSNG 304


>At2g13230 pseudogene
          Length = 353

 Score =  231 bits (589), Expect = 3e-60
 Identities = 126/358 (35%), Positives = 200/358 (55%), Gaps = 28/358 (7%)

Query: 1232 YLERVRYLMTLFQEVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIE--- 1288
            YL  V+     F E  +  +PR EN  ADALA LAST      + +  E +  PSIE   
Sbjct: 4    YLALVQDHAKQFHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPSIELDK 63

Query: 1289 ----------------GELMACVNRGRTWMDPIISILAGDPAEVEQC-TKEQQREASHYT 1331
                             +    +     W++PI + ++     +++   ++ + EA+ + 
Sbjct: 64   VEHAFPIQVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKVRLDKWEARKLKAEAARFV 123

Query: 1332 LIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLR 1391
            L++  L++   S PL+ CV  E    +M EVH G C ++ GGR+LA K+ R G++WPT+ 
Sbjct: 124  LVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKRLGYFWPTMI 183

Query: 1392 KDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVA 1451
            KDC       ++CQ  A     P + L ++++P+P   W +D++GP   ++ Q K +LV 
Sbjct: 184  KDC-------EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMHASK-QKKLVLVL 235

Query: 1452 VDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMG 1511
             DYF+K  EAE  A I  A++ +F WK I+CR G+P  IV+DNG+QF S++ + FC + G
Sbjct: 236  TDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFISTRFQGFCDKWG 295

Query: 1512 IQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTT 1569
            I++  ++  + Q NGQ ++AN+ IL GL++RL   KG+W+DEL  VLWS+ TT +  T
Sbjct: 296  IRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSHRTTPRRAT 353


>At2g10780 pseudogene
          Length = 1611

 Score =  231 bits (588), Expect = 4e-60
 Identities = 148/493 (30%), Positives = 244/493 (49%), Gaps = 16/493 (3%)

Query: 707  LALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKW 766
            + L P   P+S+   R+   +   +++++++LL   FIR    P W A V+ VKK +G +
Sbjct: 651  IELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSF 709

Query: 767  RMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAF 826
            R+C+DY  LNK   K+ YPLP ID L+D   G +  S +D  SGYHQI + P D  KTAF
Sbjct: 710  RLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAF 769

Query: 827  MTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDL 886
             T   ++ +  MPFGL NA A + ++M+ VF   +   + ++++D++V S     H + L
Sbjct: 770  RTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHL 829

Query: 887  EEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEV 946
                  +R+H +     KCSF  +   FLG +I+ +G+ ++PEK ++I++   P N  E+
Sbjct: 830  RAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEI 889

Query: 947  QRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKP 1006
            +   G      RF+      + P  +   K+ AF W+ ECE++F+ LK +L++ P+L  P
Sbjct: 890  RSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLP 949

Query: 1007 IQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTA 1066
             +G P  +Y   S   L  V++Q    +  ++ + S  L+  E  Y   +    AV+   
Sbjct: 950  EEGEPYTVYTDASIVGLGCVLMQ----KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFL 1005

Query: 1067 RRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSEYGLQY-----DKRGTVG 1120
            +  R Y     V++ TD   L+ +  +P+L+ R   W   +++Y L              
Sbjct: 1006 KIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVAD 1065

Query: 1121 AQSLADFVVELTPDRFERVDTQWTLFVDGSSNS---SGSGAGVTLEGPGELVLEQSLKFE 1177
            A S     VE    + + V+   TL V+  S      G GA    +    + L Q    E
Sbjct: 1066 ALSRRRSEVEAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERDEE 1125

Query: 1178 FK--ATNNQAEYE 1188
             K  A NN+ EY+
Sbjct: 1126 IKGWAQNNKTEYQ 1138



 Score =  106 bits (264), Expect = 1e-22
 Identities = 138/564 (24%), Positives = 235/564 (41%), Gaps = 49/564 (8%)

Query: 1143 WTLFVDGSSNSSGSGAGVTLEGPGELVL---EQSLKFEFKATNNQAEYEALIAGLKLARE 1199
            +T++ D S      G G  L   G ++     Q  K E     +  E  A++  LK+ R 
Sbjct: 955  YTVYTDASI----VGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRS 1010

Query: 1200 VKIRSLL-IRTDSQLVENQVKGTFQVKDPNLIKYLERVRYLMTLFQE--VVVEYVPRAEN 1256
                + + I TD +     +K  F   + NL     R R  M L  +  + + Y P   N
Sbjct: 1011 YLYGAKVQIYTDHK----SLKYIFTQPELNL-----RQRRWMELVADYNLDIAYHPGKAN 1061

Query: 1257 QRADALAKLASTRKPGNNKSVIQE---TLAYPSIEGELMACVNRGRTWMDPIISILAGDP 1313
            Q ADAL++  S  +   ++  +     TL   ++  E+           D +  I     
Sbjct: 1062 QVADALSRRRSEVEAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQE 1121

Query: 1314 AEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVSPEKY--EAIMSEVHEGVCASHI 1371
             + E     Q  +  + T  +G +   G       CV  ++   E I+ E H+   + H 
Sbjct: 1122 RDEEIKGWAQNNKTEYQTSNNGTIVVNG-----RVCVPNDRALKEEILREAHQSKFSIHP 1176

Query: 1372 GGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAP-WPFAMW 1430
            G   +  + L+  ++W  ++KD   +V +C  CQ+     + P   L  +  P W +   
Sbjct: 1177 GSNKMY-RDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHI 1235

Query: 1431 GVDLVGPFPTA-RAQMKFILVAVDYFTKWIEAEPLAKITSAKIV-NFYWKRIVCRFGIPR 1488
             +D V   PT  +++   + V VD  TK      ++    A+I+   Y   IV   GIP 
Sbjct: 1236 TMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPV 1295

Query: 1489 AIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKG 1548
            +IVSD  T+F+S   + F K +G ++  ++  HPQT+ Q E   + +   LR  + +  G
Sbjct: 1296 SIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGG 1355

Query: 1549 AWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMA 1608
             W   L  V ++YN + Q++   +P+   YG     P+      W T  G   E +    
Sbjct: 1356 NWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL-----CW-TPVG---ERRLFGP 1406

Query: 1609 VELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVLKWRSGAPG-------N 1661
              +D  +E      I+    + R  +  N R +  + QVGDLV        G        
Sbjct: 1407 TIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRK 1466

Query: 1662 KLTPNWEGPYRIVKVLGNGAYHLE 1685
            KL+P + GPY++++ +G  AY L+
Sbjct: 1467 KLSPRYVGPYKVIERVGAVAYKLD 1490


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  224 bits (572), Expect = 3e-58
 Identities = 133/407 (32%), Positives = 212/407 (51%), Gaps = 6/407 (1%)

Query: 707  LALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKW 766
            + L P   P+S+   R+   +   +++++  LL   FIR    P W A V+ VKK +G +
Sbjct: 483  IELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSP-WGAPVLFVKKKDGSF 541

Query: 767  RMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAF 826
            R+C+DY +LN+   K+ YPLP ID L+D   G    S +D  SGYHQI +  AD  KTAF
Sbjct: 542  RLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 601

Query: 827  MTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDL 886
             T   ++ +  MPFGL NA A + RLM+ VF   +   + +++DD++V S    +    L
Sbjct: 602  RTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHL 661

Query: 887  EEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEV 946
                 ++R+  +     KCSF  +   FLG ++++ G+ ++PEK +AI+    P+N  E+
Sbjct: 662  RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 721

Query: 947  QRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKP 1006
            +   G      RF+      + P  K   K+V F W+ ECEE FV LKE+L+S P+L+ P
Sbjct: 722  RSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALP 781

Query: 1007 IQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTA 1066
              G P  +Y   S   L  V++Q      +++ + S  L   E  Y   +    AV+   
Sbjct: 782  EHGQPYMVYTDASRVGLGCVLMQ----HGKVIAYASRQLMKHEGNYPTHDLEMAAVIFAL 837

Query: 1067 RRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSEYGLQ 1112
            +  R Y     V+V TD   L+ +  +P+L+ R   W   +++Y L+
Sbjct: 838  KIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLE 884



 Score = 30.4 bits (67), Expect = 9.2
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 1381 LRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAP-WPFAMWGVDLVGPFP 1439
            L+  + W  ++ D  ++V +C  CQ+     +     L ++  P W +    +DLV    
Sbjct: 965  LKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLR 1024

Query: 1440 TARAQMKFILVAVDYFTKWIEAEPLAKITSAKIV-NFYWKRIVCRFGIPRAI--VSDNGT 1496
             +R +   I V VD  TK      + K   A ++   +   IV   G+P  +    D   
Sbjct: 1025 VSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEAQDRQR 1083

Query: 1497 QFSSSQTREFCKEMG--IQMRFASVEHP 1522
             ++  + RE   E+G  + ++ A +  P
Sbjct: 1084 SYADKRRRELEFEVGDRVYLKMAMLRGP 1111


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  221 bits (564), Expect = 2e-57
 Identities = 131/407 (32%), Positives = 211/407 (51%), Gaps = 6/407 (1%)

Query: 707  LALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKW 766
            + L P   P+S+   R+   +   ++++++ LL   FIR    P W A V+ VKK +G +
Sbjct: 509  IELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSP-WGAPVLFVKKKDGSF 567

Query: 767  RMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAF 826
            R+C+DY  LN    K+ YPLP ID L+D   G    S +D  SGYHQI +  AD  KTAF
Sbjct: 568  RLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 627

Query: 827  MTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDL 886
             T   ++ +  MPF L NA A + RLM+ VF   +   + +++DD++V S    +H   L
Sbjct: 628  RTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHL 687

Query: 887  EEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEV 946
                 ++R+  +     KCSF  +   FLG ++++ G+ ++PEK +AI+    P+N  E+
Sbjct: 688  RRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 747

Query: 947  QRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKP 1006
            +          RF+      + P  K   K+V F W+ ECEE FV LKE+L+S P+L+ P
Sbjct: 748  RSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALP 807

Query: 1007 IQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTA 1066
              G P  +Y   S   L  V++Q      +++ + S  L+  E  Y   +     V+   
Sbjct: 808  EHGQPYMVYTDASRVGLGCVLMQ----RGKVIAYASRQLRKHEGNYPTHDLEMAVVIFAL 863

Query: 1067 RRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSEYGLQ 1112
            +  R Y     V+V TD   L+ +  +P+L+ R + W   +++Y L+
Sbjct: 864  KIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLE 910



 Score =  103 bits (257), Expect = 9e-22
 Identities = 140/577 (24%), Positives = 234/577 (40%), Gaps = 87/577 (15%)

Query: 1151 SNSSGSGAGVTLEGPGELVL---EQSLKFEFKATNNQAEYEALIAGLKLAREVKIRSLLI 1207
            +++S  G G  L   G+++     Q  K E     +  E   +I  LK+ R     S L 
Sbjct: 817  TDASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWR-----SYLY 871

Query: 1208 RTDSQLVENQVKGTFQVKDPNLIKYLERVRYL-MTLFQEVVVEYVPRAENQRADALAKLA 1266
                Q+  +     +    P L   L ++R++ +    ++ + Y P   N  ADAL++  
Sbjct: 872  GGKVQVFTDHKSLKYIFNQPEL--NLRQMRWMELVADYDLEIAYHPGKANVVADALSRKR 929

Query: 1267 STRKPGNNKSVIQETLAYPSIEGELMACVNRGRTWMDPIISILAGDPAEV---EQCTKEQ 1323
                PG      Q   A  S  G L  CV       +P+  + A D A++    +  +E+
Sbjct: 930  VGAAPG------QSVEALVSEIGALRLCV----VAREPL-GLEAVDRADLLTRARLAQEK 978

Query: 1324 QREASHYTLIDGHLYRRGFSTPLLK----CV--SPEKYEAIMSEVHEGVCASHIGGRSLA 1377
                   +  +G  Y+   +  +      CV    E    I+SE H  + + H G   + 
Sbjct: 979  DEGLIAASKAEGSEYQFAANGTIFVYGRVCVPKDEELRREILSEAHASMFSIHPGATKMY 1038

Query: 1378 CKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGP 1437
             + L+  + W  +++D  ++V +C  CQ            LV      P A+W       
Sbjct: 1039 -RDLKRYYQWVGMKRDVANWVAECDVCQ------------LVKAEHQVPDAIW------- 1078

Query: 1438 FPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIV-NFYWKRIVCRFGIPRAIVSDNGT 1496
                        V +D  TK      + K   A ++   Y   IV   G+P +IVSD  +
Sbjct: 1079 ------------VIMDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDS 1126

Query: 1497 QFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPA 1556
            +F+ +  R F  +MG +++ ++  HPQT+GQ E   + +   LR  + +  G W D L  
Sbjct: 1127 KFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSL 1186

Query: 1557 VLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSE 1616
            V ++YN + Q++    PF   YG     P+       R+  G             D + E
Sbjct: 1187 VEFAYNNSYQASIGMAPFEALYGRPCWTPLRWTQVEERSIYG------------ADYVQE 1234

Query: 1617 TRDEAHIRETAMKQ---RVAAKFNSRVRVRDMQVGDLVLKWRSGAPG-------NKLTPN 1666
            T +   + +  MK+   R  +  + R R  + +VGD V    +   G        KL+P 
Sbjct: 1235 TTERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPR 1294

Query: 1667 WEGPYRIVKVLGNGAYHLEELD-GRRLPRSFNGLSLR 1702
            + GP+RIV+ +G  AY LE  D  R   + F+ L LR
Sbjct: 1295 YMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLR 1331


>At3g11970 hypothetical protein
          Length = 1499

 Score =  213 bits (542), Expect = 8e-55
 Identities = 136/412 (33%), Positives = 218/412 (52%), Gaps = 9/412 (2%)

Query: 705  HRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG 764
            H++ L     PV+Q   R    +   + + V+ LL    ++    P + + VV+VKK +G
Sbjct: 591  HKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDG 649

Query: 765  KWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKT 824
             WR+CVDY +LN    KDS+P+P I+ L+D   G  + S +D  +GYHQ+RM P D  KT
Sbjct: 650  TWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKT 709

Query: 825  AFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQ 884
            AF T   ++ Y  MPFGL NA AT+Q LM+ +F   + + + V+ DD++V S    +H Q
Sbjct: 710  AFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQ 769

Query: 885  DLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVK 944
             L++ F  +R + +     KC+F V   ++LG  I+++GIE +P K KA+++   P+ +K
Sbjct: 770  HLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLK 829

Query: 945  EVQRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILS 1004
            +++   G      RF+   G  + P    L K  AFEWTA  ++AF  LK  L   P+LS
Sbjct: 830  QLRGFLGLAGYYRRFVRSFGVIAGP-LHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLS 888

Query: 1005 KPIQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLV 1064
             P+      +        + +V++QE    H + Y +S  L+G ++     EK  LAV+ 
Sbjct: 889  LPLFDKQFVVETDACGQGIGAVLMQE---GHPLAY-ISRQLKGKQLHLSIYEKELLAVIF 944

Query: 1065 TARRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSE--YGLQY 1113
              R+ R Y       ++TD   L+ +L++   +     W  +L E  Y +QY
Sbjct: 945  AVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQY 996



 Score =  101 bits (251), Expect = 4e-21
 Identities = 133/565 (23%), Positives = 234/565 (40%), Gaps = 80/565 (14%)

Query: 1147 VDGSSNSSGSGAGVTLEGPGELVLEQSLKF-EFKATNNQAEYEALIAGLKLAREVKIRS- 1204
            V+  +   G GA +  EG     + + LK  +   +  + E  A+I  ++  R   ++S 
Sbjct: 898  VETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSH 957

Query: 1205 LLIRTDSQ----LVENQVKGTFQVKD-PNLIKYLERVRYLMTLFQEVVVEYVPRAENQRA 1259
             +I+TD +    L+E ++    Q +  P L+++            +  ++Y    EN  A
Sbjct: 958  FIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEF------------DYEIQYRQGKENVVA 1005

Query: 1260 DALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVNRGR---TWMDPIISILAGDPAEV 1316
            DAL+++  +        V+   +A   +E +L+  +  G    + +  II+ L  DP   
Sbjct: 1006 DALSRVEGSE-------VLH--MAMTVVECDLLKDIQAGYANDSQLQDIITALQRDP--- 1053

Query: 1317 EQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCASHIGGRSL 1376
                     ++  Y     ++ RR   + ++   +      I+  +H      H  GR +
Sbjct: 1054 ---------DSKKYFSWSQNILRR--KSKIVVPANDNIKNTILLWLHGSGVGGH-SGRDV 1101

Query: 1377 ACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWG---VD 1433
              + ++  FYW  + KD   +++ C  CQ       A P  L  +  P P  +W    +D
Sbjct: 1102 THQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL--PIPDTIWSEVSMD 1159

Query: 1434 LVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSA-KIVNFYWKRIVCRFGIPRAIVS 1492
             +   P +  +   I+V VD  +K      L+   SA  + + Y   +    G P +IVS
Sbjct: 1160 FIEGLPVSGGKT-VIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVS 1218

Query: 1493 DNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLD 1552
            D    F+S   REF    G+ ++  S  HPQ++GQ E  NR +   LR    +    W  
Sbjct: 1219 DRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSK 1278

Query: 1553 ELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELD 1612
             L    + YNT   S++R TPF + YG   + PV +        PG     ++ +AV   
Sbjct: 1279 WLALAEYWYNTNYHSSSRMTPFEIVYG--QVPPVHLPYL-----PG-----ESKVAVVAR 1326

Query: 1613 LLSETRD-----EAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVL----KWRSGA----P 1659
             L E  D     + H+     + +  A  +     R+ ++GD V      +R  +     
Sbjct: 1327 SLQEREDMLLFLKFHLMRAQHRMKQFA--DQHRTEREFEIGDYVYVKLQPYRQQSVVMRA 1384

Query: 1660 GNKLTPNWEGPYRIVKVLGNGAYHL 1684
              KL+P + GPY+I+   G  AY L
Sbjct: 1385 NQKLSPKYFGPYKIIDRCGEVAYKL 1409


>At1g36590 hypothetical protein
          Length = 1499

 Score =  213 bits (542), Expect = 8e-55
 Identities = 136/412 (33%), Positives = 218/412 (52%), Gaps = 9/412 (2%)

Query: 705  HRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG 764
            H++ L     PV+Q   R    +   + + V+ LL    ++    P + + VV+VKK +G
Sbjct: 591  HKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDG 649

Query: 765  KWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKT 824
             WR+CVDY +LN    KDS+P+P I+ L+D   G  + S +D  +GYHQ+RM P D  KT
Sbjct: 650  TWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKT 709

Query: 825  AFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQ 884
            AF T   ++ Y  MPFGL NA AT+Q LM+ +F   + + + V+ DD++V S    +H Q
Sbjct: 710  AFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQ 769

Query: 885  DLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVK 944
             L++ F  +R + +     KC+F V   ++LG  I+++GIE +P K KA+++   P+ +K
Sbjct: 770  HLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLK 829

Query: 945  EVQRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILS 1004
            +++   G      RF+   G  + P    L K  AFEWTA  ++AF  LK  L   P+LS
Sbjct: 830  QLRGFLGLAGYYRRFVRSFGVIAGP-LHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLS 888

Query: 1005 KPIQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLV 1064
             P+      +        + +V++QE    H + Y +S  L+G ++     EK  LAV+ 
Sbjct: 889  LPLFDKQFVVETDACGQGIGAVLMQE---GHPLAY-ISRQLKGKQLHLSIYEKELLAVIF 944

Query: 1065 TARRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSE--YGLQY 1113
              R+ R Y       ++TD   L+ +L++   +     W  +L E  Y +QY
Sbjct: 945  AVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQY 996



 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 132/565 (23%), Positives = 232/565 (40%), Gaps = 80/565 (14%)

Query: 1147 VDGSSNSSGSGAGVTLEGPGELVLEQSLKF-EFKATNNQAEYEALIAGLKLAREVKIRS- 1204
            V+  +   G GA +  EG     + + LK  +   +  + E  A+I  ++  R   ++S 
Sbjct: 898  VETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSH 957

Query: 1205 LLIRTDSQ----LVENQVKGTFQVKD-PNLIKYLERVRYLMTLFQEVVVEYVPRAENQRA 1259
             +I+TD +    L+E ++    Q +  P L+++            +  ++Y    EN  A
Sbjct: 958  FIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEF------------DYEIQYRQGKENVVA 1005

Query: 1260 DALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVNRGR---TWMDPIISILAGDPAEV 1316
            DAL+++  +        V+   +A   +E +L+  +  G    + +  II+ L  DP   
Sbjct: 1006 DALSRVEGSE-------VLH--MAMTVVECDLLKDIQAGYANDSQLQDIITALQRDP--- 1053

Query: 1317 EQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCASHIGGRSL 1376
                     ++  Y     ++ RR   + ++   +      I+  +H      H  GR +
Sbjct: 1054 ---------DSKKYFSWSQNILRR--KSKIVVPANDNIKNTILLWLHGSGVGGH-SGRDV 1101

Query: 1377 ACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWG---VD 1433
              + ++  FY   + KD   +++ C  CQ       A P  L  +  P P  +W    +D
Sbjct: 1102 THQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL--PIPDTIWSEVSMD 1159

Query: 1434 LVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSA-KIVNFYWKRIVCRFGIPRAIVS 1492
             +   P +  +   I+V VD  +K      L+   SA  +   Y   +    G P +IVS
Sbjct: 1160 FIEGLPVSGGKT-VIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVS 1218

Query: 1493 DNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLD 1552
            D    F+S   REF    G+ ++  S  HPQ++GQ E  NR +   LR    +    W  
Sbjct: 1219 DRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSK 1278

Query: 1553 ELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELD 1612
             L    + YNT   S++R TPF + YG   + PV +        PG     ++ +AV   
Sbjct: 1279 WLALAEYWYNTNYHSSSRMTPFEIVYG--QVPPVHLPYL-----PG-----ESKVAVVAR 1326

Query: 1613 LLSETRD-----EAHIRETAMKQRVAAKFNSRVRVRDMQVGDLVL----KWRSGA----P 1659
             L E  D     + H+     + +  A  +     R+ ++GD V      +R  +     
Sbjct: 1327 SLQEREDMLLFLKFHLMRAQHRMKQFA--DQHRTEREFEIGDYVYVKLQPYRQQSVVMRA 1384

Query: 1660 GNKLTPNWEGPYRIVKVLGNGAYHL 1684
              KL+P + GPY+I+   G  AY L
Sbjct: 1385 NQKLSPKYFGPYKIIDRCGEVAYKL 1409


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  213 bits (541), Expect = 1e-54
 Identities = 128/407 (31%), Positives = 208/407 (50%), Gaps = 18/407 (4%)

Query: 707  LALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKW 766
            + L P   P+S+   R+   +   ++++++ LL A              V+ VKK +G +
Sbjct: 470  IELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAP-------------VLFVKKKDGSF 516

Query: 767  RMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAF 826
            R+C+DY  LN    K+ YPLP ID L+D   G    S +D  SGYH I +  AD  KTAF
Sbjct: 517  RLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAF 576

Query: 827  MTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDL 886
             T   ++ +  MPFGL NA A + RLM+ VF   +   + +++DD++V S    +H   L
Sbjct: 577  RTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHL 636

Query: 887  EEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEV 946
                 ++R+  +     KCSF  +   FLG ++++ G+ ++PEK +AI+   +P+N  E+
Sbjct: 637  RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEI 696

Query: 947  QRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKP 1006
            +   G      RF+      + P  K   K+V F W+ ECEE FV LKE+L+S P+L+ P
Sbjct: 697  RSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALP 756

Query: 1007 IQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTA 1066
              G P  +Y   S   L  V++Q      +++ + S  L+  E  Y   +    AV+   
Sbjct: 757  EHGEPYMVYTDASGVGLGCVLMQ----RGKVIAYASRQLRKHEGNYPTHDLEMAAVIFAL 812

Query: 1067 RRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSEYGLQ 1112
            +  R Y     V+V TD   L+ +  +P+L+ R   W   +++Y L+
Sbjct: 813  KIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLE 859



 Score =  100 bits (250), Expect = 6e-21
 Identities = 87/312 (27%), Positives = 140/312 (43%), Gaps = 25/312 (8%)

Query: 1392 KDCMDFVKQCKECQVFADLSKAPPKELVTMSAP-WPFAMWGVDLVGPFPTARAQMKFILV 1450
            +D  ++V +C  CQ+     + P   L ++  P W +    +D V   P +R +   I V
Sbjct: 941  EDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTK-DAIWV 999

Query: 1451 AVDYFTKWIEAEPLAKITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKE 1509
             VD  TK      + K   A ++   Y   IV   G+P +IVSD  ++F+S+  R F  E
Sbjct: 1000 IVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAE 1059

Query: 1510 MGIQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTT 1569
            MG +++ ++  HPQT GQ E   + +   LR  + +  G W D L  V ++YN +  ++ 
Sbjct: 1060 MGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASI 1119

Query: 1570 RETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMK 1629
               PF   Y      P+ +     R+  G             D + ET +   + +  MK
Sbjct: 1120 GMAPFEALYERPCRTPLCLTQVGERSIYG------------ADYVQETTERIRVLKLNMK 1167

Query: 1630 Q---RVAAKFNSRVRVRDMQVGDLVLKWRSGAPG-------NKLTPNWEGPYRIVKVLGN 1679
            +   R  +  + R R  + +VGD V    +   G        KL+P + GP+RIV+ +G 
Sbjct: 1168 EAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGP 1227

Query: 1680 GAYHLEELDGRR 1691
             AY LE  D  R
Sbjct: 1228 VAYRLELPDVMR 1239


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  212 bits (540), Expect = 1e-54
 Identities = 118/366 (32%), Positives = 194/366 (52%), Gaps = 5/366 (1%)

Query: 707  LALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANGKW 766
            + L P   P+S+   R+   +   +++++++LLA  FIR    P W A V+ VKK +G +
Sbjct: 146  IELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSF 204

Query: 767  RMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKTAF 826
            R+C+DY  LNK   K+ YPLP ID L+D   G +  S +D  SGYHQI + P D  KTAF
Sbjct: 205  RLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAF 264

Query: 827  MTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQDL 886
             T   ++ +  MPFGL NA A + ++M+ VF   +   + +++DD++V S     H + L
Sbjct: 265  RTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHL 324

Query: 887  EEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVKEV 946
                  +R+H +     K SF  +   FLG +I+ +G+ ++PEK ++I++   P N  E+
Sbjct: 325  RAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEI 384

Query: 947  QRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILSKP 1006
            +   G      RF+      + P  +   K+ AF W+ ECE++F+ LK +L + P+L  P
Sbjct: 385  RSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLP 444

Query: 1007 IQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLVTA 1066
             +G P  +Y   S   L  V++Q    +  ++ + S  L+  E  Y   +    AV+   
Sbjct: 445  EEGEPYTVYTDASIVGLGCVLMQ----KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFAL 500

Query: 1067 RRLRPY 1072
            +  R Y
Sbjct: 501  KIWRSY 506



 Score =  109 bits (272), Expect = 2e-23
 Identities = 105/414 (25%), Positives = 183/414 (43%), Gaps = 29/414 (7%)

Query: 1284 YPSIEGELMACVNRGRTWMDPIISILAGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFS 1343
            YP+ + E+ A V   + W   +I +      E++  T   + E  + T  +G +   G  
Sbjct: 486  YPTHDLEMAAVVFALKIWRSYLIRLAQERDEEIKGWTLNNKTE--YQTSNNGTIVVNG-- 541

Query: 1344 TPLLKCVSPEKY--EAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQC 1401
                 CV  ++   E I+ E H+   + H G   +  + L+  ++W  +RKD   +V +C
Sbjct: 542  ---RVCVPNDRALKEEILREAHQSKFSIHPGSNKMY-RDLKRYYHWVGMRKDVARWVAKC 597

Query: 1402 KECQVFADLSKAPPKELVTMS-APWPFAMWGVDLVGPFPTA-RAQMKFILVAVDYFTKWI 1459
              CQ+     + P   L  +  + W +    +D V   PT  +++   + V VD  TK  
Sbjct: 598  PTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSA 657

Query: 1460 EAEPLAKITSAKIV-NFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFAS 1518
                ++    A+I+   Y   I+   GIP +IVSD  T+F+S     F K +G ++  ++
Sbjct: 658  HFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLST 717

Query: 1519 VEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTY 1578
              HPQT+GQ E   + +   LR  + +  G W   L  + ++YN + Q++   +P+   Y
Sbjct: 718  AYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALY 777

Query: 1579 GVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNS 1638
            G     P+      W T  G   E +      +D  +E      I+    + R  +  N 
Sbjct: 778  GRACRTPL-----CW-TPVG---ERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANK 828

Query: 1639 RVRVRDMQVGDLVLKWRSGAPG-------NKLTPNWEGPYRIVKVLGNGAYHLE 1685
            R +  + QVGDLV        G        KL+P + GPY++++ +G  AY L+
Sbjct: 829  RRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 882


>At2g06890 putative retroelement integrase
          Length = 1215

 Score =  188 bits (478), Expect = 2e-47
 Identities = 146/560 (26%), Positives = 252/560 (44%), Gaps = 37/560 (6%)

Query: 564  VIIGRNTLNRLCAVI--STAHLAVKYPLSSGKVGKLKVDQKMARECYNN--CLNFYGKKS 619
            ++IG+     LC V+     H+ +  P  S        D+K+  + + N     F G K+
Sbjct: 287  IVIGKYEDEILCDVLPMEAGHILLGRPWQS--------DRKVMHDGFTNRHSFEFKGGKT 338

Query: 620  ALVGHRCYEIEASDENLDPRGEGRVNRPTPIEETKALKFGDRTLKIGTRLTEEQETRLTK 679
             LV    +E+     +L  + E  V +P          F  ++ ++ +  + +Q   L  
Sbjct: 339  ILVSMTPHEVYQDQIHLKQKKEQVVKQPN---------FFAKSGEVKSAYSSKQPMLLF- 388

Query: 680  LLGENLDLFAWSCKDMPGIDPNFICHRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLL 739
                   +F  +   +    P       +L    K V       G    + ++ ++D + 
Sbjct: 389  -------VFKEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVP 441

Query: 740  AAEFIREVKYPTW-LANVVMVKKANGKWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASG 798
             A       Y T  +    + ++ +G WRMC D   +N    K  +P+P +D ++D   G
Sbjct: 442  GASLPNRPAYRTNPVETKELQRQKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHG 501

Query: 799  NELLSLMDAYSGYHQIRMHPADEDKTAFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFA 858
            + + S +D  SGYHQIRM+  DE KTAF T    Y +  MPFGL +A +T+ RLM+ V  
Sbjct: 502  SSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLR 561

Query: 859  GQVGRNMEVYVDDMIVKSVRGLDHHQDLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFM 918
              +G  + VY DD++V S    +H + L+     +RK  +  N +KC+F      FLGF+
Sbjct: 562  AFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFV 621

Query: 919  ITSRGIEINPEKCKAIQQMKSPSNVKEVQRLTGRIAALSRFLPQSGDRSFPFFKCLRKNV 978
            +++ G++++ EK KAI+   SP  V EV+   G      RF         P  + ++K+V
Sbjct: 622  VSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDV 681

Query: 979  AFEWTAECEEAFVRLKELLSSPPILSKPIQGHPLHLYFAVSDSALSSVMLQEIDGEHRIV 1038
             F+W    EEAF  LK+ L++ P+L          +    S   + +V++Q    + +++
Sbjct: 682  GFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQ----DQKLI 737

Query: 1039 YFVSHTLQGAEVRYQKIEKAALAVLVTARRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSG 1097
             F S  L GA + Y   +K   A++   +R + Y       + TD   L+ +  +  L+ 
Sbjct: 738  AFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNK 797

Query: 1098 RLVAW--SVELSEYGLQYDK 1115
            R   W   +E   Y ++Y K
Sbjct: 798  RHARWVEFIETFAYVIKYKK 817



 Score = 38.1 bits (87), Expect = 0.044
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 11/122 (9%)

Query: 1572 TPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQR 1631
            +PF++ YG + + P ++       R   + + +A      +L+ +  + A        + 
Sbjct: 988  SPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKA------ELVQQIHENARRNIEEKTKL 1041

Query: 1632 VAAKFNSRVRVRDMQVGDLVL----KWRSGAPG-NKLTPNWEGPYRIVKVLGNGAYHLEE 1686
             A + N   R +  +VGD+V     K R  A   +KL P  +GP++I+K + + AY L+ 
Sbjct: 1042 YAKQANKGRREQIFEVGDMVWIHLRKERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDL 1101

Query: 1687 LD 1688
             D
Sbjct: 1102 QD 1103


>At2g13060 pseudogene
          Length = 930

 Score =  184 bits (467), Expect = 4e-46
 Identities = 117/384 (30%), Positives = 185/384 (47%), Gaps = 17/384 (4%)

Query: 1279 QETLAYPSIEGELMACVNRGRTWMDPIISILAGDPAEVEQCT----KEQQREASHYTLID 1334
            + T  + S E   +  V +   W   I++ LA D  E +  T    K   RE   Y   +
Sbjct: 116  ESTRKWSSTENCAVTAVEKDYPWYADIVNYLAAD-VEPDNFTDYNKKRFLREIRRYQWDE 174

Query: 1335 GHLYRRGFSTPLLKCVSPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDC 1394
             +LY+  +     +C++  +  +I+S  H      H        KVL+A F+WPT+ +D 
Sbjct: 175  PYLYKHSYDGIYRRCIAATEVPSILSHCHSSSYGGHFATFKTVSKVLQADFWWPTMFRDT 234

Query: 1395 MDFVKQCKECQVFADLSKA---PPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVA 1451
              F+ QC  CQ    +SK    PP   + +     F  WG+D +GPFP +   + +ILV 
Sbjct: 235  QKFISQCDPCQRRGKISKRNEMPPNFRLEVEV---FDRWGIDFMGPFPPSNKNL-YILVD 290

Query: 1452 VDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMG 1511
            VDY +KW+EA    K  SA ++  +   I  RFG+PR ++SD    F +    +   + G
Sbjct: 291  VDYVSKWVEAIASLKNDSAVVMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYG 350

Query: 1512 IQMRFASVEHPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRE 1571
            +Q R A+  HPQT+GQVE +NR I   L + + +AK  W  +L   LW+Y T  ++    
Sbjct: 351  VQHRVATPYHPQTSGQVEVSNRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGT 410

Query: 1572 TPFRMTYGVDAMLPVEIDN-FTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQ 1630
            TPF + YG    LPVE+++   W  +    +   A  + ELD   E R  A+      K+
Sbjct: 411  TPFHLLYGKACHLPVELEHKAAWAVKMMNFDIKSAGES-ELD---EIRIHAYDNSKLYKE 466

Query: 1631 RVAAKFNSRVRVRDMQVGDLVLKW 1654
            R  A  + ++  R  +  D +L++
Sbjct: 467  RTKAYHDKKILTRTFEPNDQILRF 490


>At1g35370 hypothetical protein
          Length = 1447

 Score =  180 bits (457), Expect = 6e-45
 Identities = 125/412 (30%), Positives = 208/412 (50%), Gaps = 17/412 (4%)

Query: 705  HRLALNPSVKPVSQLRRRLGGDKGKAVQQEVDKLLAAEFIREVKYPTWLANVVMVKKANG 764
            H++ L     PV+Q   R    +   + + V  ++ +  I+    P + + VV+VKK +G
Sbjct: 570  HKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASPVVLVKKKDG 628

Query: 765  KWRMCVDYTDLNKACPKDSYPLPSIDSLVDGASGNELLSLMDAYSGYHQIRMHPADEDKT 824
             WR+CVDYT+LN    KD + +P I+ L+D   G+ + S +D  +GYHQ+RM P D  KT
Sbjct: 629  TWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKT 688

Query: 825  AFMTARVNYCYRTMPFGLKNAGATYQRLMDRVFAGQVGRNMEVYVDDMIVKSVRGLDHHQ 884
            AF T   ++ Y  M FGL NA AT+Q LM+ VF   + + + V+ DD+++ S    +H +
Sbjct: 689  AFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKE 748

Query: 885  DLEEAFGEIRKHSMRLNPEKCSFGVQGGKFLGFMITSRGIEINPEKCKAIQQMKSPSNVK 944
             L   F  +R H +        F     + LG  I++R IE +P K +A+++  +P+ VK
Sbjct: 749  HLRLVFEVMRLHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVK 800

Query: 945  EVQRLTGRIAALSRFLPQSGDRSFPFFKCLRKNVAFEWTAECEEAFVRLKELLSSPPILS 1004
            +V+   G      RF+   G  + P    L K   F W+ E + AF  LK +L + P+L+
Sbjct: 801  QVRGFLGFAGYYRRFVRNFGVIAGP-LHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLA 859

Query: 1005 KPIQGHPLHLYFAVSDSALSSVMLQEIDGEHRIVYFVSHTLQGAEVRYQKIEKAALAVLV 1064
             P+      +        + +V++Q+    H + Y +S  L+G ++     EK  LA + 
Sbjct: 860  LPVFDKQFMVETDACGQGIRAVLMQK---GHPLAY-ISRQLKGKQLHLSIYEKELLAFIF 915

Query: 1065 TARRLRPYFQSFPVKVRTD-LPLRQVLQKPDLSGRLVAWSVELSE--YGLQY 1113
              R+ R Y       ++TD   L+ +L++   +     W  +L E  Y +QY
Sbjct: 916  AVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQY 967



 Score =  101 bits (252), Expect = 3e-21
 Identities = 90/347 (25%), Positives = 158/347 (44%), Gaps = 30/347 (8%)

Query: 1348 KCVSPEKYEAIMSEVHEGVCASHIGGRS---LACKVLRAGFYWPTLRKDCMDFVKQCKEC 1404
            K V P   E I +++ + +  S +GGRS    + + +++ FYW  + KD   F++ C  C
Sbjct: 1042 KIVVPNDVE-ITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTC 1100

Query: 1405 QVFADLSKAPPKELVTMSAPWPFAMW---GVDLVGPFPTARAQMKFILVAVDYFTKWIEA 1461
            Q     + A P  L  +  P P  +W    +D +   P +  +   I+V VD  +K    
Sbjct: 1101 QQCKSDNAAYPGLLQPL--PIPDKIWCDVSMDFIEGLPNSGGK-SVIMVVVDRLSKAAHF 1157

Query: 1462 EPLAKITSA-KIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVE 1520
              LA   SA  +   +   +    G P +IVSD    F+S   +EF K  G+++R +S  
Sbjct: 1158 VALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAY 1217

Query: 1521 HPQTNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGV 1580
            HPQ++GQ E  NR +   LR         W   LP   + YNT   S+++ TPF + YG 
Sbjct: 1218 HPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYG- 1276

Query: 1581 DAMLPVEIDNFTWRTR-----PGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAK 1635
                P+ +     +++        +E     + ++  L+   R +  +++ A + R    
Sbjct: 1277 -QAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLM---RAQHRMKQFADQHRTERT 1332

Query: 1636 FN----SRVRVRDMQVGDLVLKWRSGAPGNKLTPNWEGPYRIVKVLG 1678
            F+      V+++  +   +VL+        KL+P + GPY+I++  G
Sbjct: 1333 FDIGDFVYVKLQPYRQQSVVLR-----VNQKLSPKYFGPYKIIEKCG 1374


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,525,336
Number of Sequences: 26719
Number of extensions: 1706825
Number of successful extensions: 5118
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 4604
Number of HSP's gapped (non-prelim): 415
length of query: 1706
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1593
effective length of database: 8,299,349
effective search space: 13220862957
effective search space used: 13220862957
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)