BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590c.5
(441 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 87 2e-17
At3g32290 hypothetical protein 84 1e-16
At2g14400 putative retroelement pol polyprotein 74 2e-13
At4g03770 hypothetical protein 71 1e-12
At1g37180 hypothetical protein 67 3e-11
At3g31520 hypothetical protein 65 6e-11
At2g15100 putative retroelement pol polyprotein 60 2e-09
At1g41780 hypothetical protein 60 2e-09
At2g12870 putative retroelement pol polyprotein 60 3e-09
At2g15410 putative retroelement pol polyprotein 56 3e-08
At3g30655 hypothetical protein, 3' partial 51 1e-06
At1g37060 Athila retroelment ORF 1, putative 50 2e-06
At4g08050 50 3e-06
At3g09620 putative RNA helicase 50 3e-06
At1g41690 hypothetical protein 49 6e-06
At2g14380 putative retroelement pol polyprotein 48 1e-05
At2g07480 F9A16.15 48 1e-05
At4g20490 putative protein 47 3e-05
At4g07640 putative athila transposon protein 47 3e-05
At2g10670 pseudogene 45 8e-05
>At1g20390 hypothetical protein
Length = 1791
Score = 86.7 bits (213), Expect = 2e-17
Identities = 111/462 (24%), Positives = 181/462 (39%), Gaps = 78/462 (16%)
Query: 10 LDSYSGDSDPKDHLLYFNTKM----VIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSIS 65
L+SY+G +DPK+ L FN + + I DA +C++F A WF+ L SI
Sbjct: 174 LESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSID 233
Query: 66 NFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYS--AASVKVEDEEPRA 123
+F +S FL ++ + DL++I Q ESL+ ++ R+ ++ V DE A
Sbjct: 234 SFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDE---A 290
Query: 124 CALAFKNGL-LPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTSP 182
+A +N + +T ++ + RAS +I EE++ ++ K
Sbjct: 291 AIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNSTKTPACK 350
Query: 183 KRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDM 242
V +D + +Q + KPT + D +PW
Sbjct: 351 DAVVIKVGPDDSNEPRQHLDRNPSAGRKPTSFLVSTETPD---AKPW------------- 394
Query: 243 VMNTDVSDMLRGASDANLVDEPEA-PKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREID 301
N + D D P A P Y CE+H+S H T++C R +
Sbjct: 395 --NKYIRD----------ADSPAAGPMY----------CEYHKSRAHSTENC----RFLQ 428
Query: 302 KLIRAGYQ-GNRQGQWRNGGDQNKAHKREEERA------DTKGKKKQESAAIATKGADDT 354
L+ A Y+ G + NK +R E A TK E I + ADD
Sbjct: 429 GLLMAKYKSGGITIECDRPPINNKNQRRNETTARQYLNDQTKPPTPAEQGIITS--ADDP 486
Query: 355 FARH-------SGPP--VGTINTIAGGFGGGGDTHAARKRH-------VRAVNSVHEVAF 398
A+ + P V ++ I GG D+ + K++ V +S
Sbjct: 487 AAKRQRNGKAIAAEPVVVRQVHVIMGGLQNCSDSVRSIKQYRKKAEMVVAWPSSTSTTRN 546
Query: 399 GFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
I+ + D EG+ +DP+VV+L ++ V RVL+D
Sbjct: 547 PNQSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLID 588
>At3g32290 hypothetical protein
Length = 612
Score = 84.3 bits (207), Expect = 1e-16
Identities = 111/448 (24%), Positives = 180/448 (39%), Gaps = 68/448 (15%)
Query: 8 LVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPR---GSI 64
L ++ ++G SDPK HL K II S A A F R S+
Sbjct: 180 LRIEYFNGSSDPKGHL-----KSFII----------------SVARAKFRQEERDAGNSV 218
Query: 65 SNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRAC 124
+F++ S+ FL Q+S + + DL+++ QQ E L++++A++ + KVE A
Sbjct: 219 DSFQELSTLFLKQYSVLIDLGTSDADLWSLSQQPNEPLRDFLAKFRSTLAKVEGINDVAA 278
Query: 125 ALAFKNGL-LPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTSPK 183
A K L +L ++ + RAS Y+ EE+ KR + K +P+
Sbjct: 279 LSALKKALWYKSEFRKELNLSKPLTIRDALHRASDYVSHEEEMELVAKRHEPSK--QTPR 336
Query: 184 RVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQREETDMV 243
K S + G Q F + + + +Y+ P + ++ R R
Sbjct: 337 IDKSQHSAPNHKKGAQGW------TFVHHEGRNFSGAHNYKADTP-RGEAARGRG----- 384
Query: 244 MNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQREIDKL 303
RG + K QP N +++CE H+S GH T C +L ++
Sbjct: 385 ---------RGRGRGRGRESYTWTKDQPA-GNEQEYCELHKSYGHHTSRCRSLGAKLVAK 434
Query: 304 IRAGYQGNRQGQWRNGG---DQNKAHKREEERADTKGKKKQESAAI----ATKGADDTFA 356
AG G GG + +A K + E+ + +Q + A +G + A
Sbjct: 435 FLAGEIG--------GGLTIEDLEAEKGKTEQVNAVANPEQAAPAANPERPKRGRGNREA 486
Query: 357 RHSGPPV--GTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFGFVHP--DITISMADF 412
P G I TI G DT + K + R ++ A F P ++T D
Sbjct: 487 DDDEPEAARGRIFTILGDSAFCQDTAPSIKAYQRKADANRNWARPFNGPNDEVTFHERDT 546
Query: 413 EGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
G+ +DP+V+ L + FNV RVL+D
Sbjct: 547 NGLDRPHNDPLVITLTIGDFNVERVLVD 574
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 19/219 (8%)
Query: 6 KTLVLDSYSGDSDPKDHLLYFNTKMVII----AASDAVKCRMFPSTFKSTAMAWFTTLPR 61
+ L L+SY+G DPK +L F + A D C++F A+ WFT L
Sbjct: 158 RKLNLESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEP 217
Query: 62 GSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEP 121
GSISNF + S FL Q+S ++ ++ DL+N+ Q E+L+ ++ ++ K+
Sbjct: 218 GSISNFNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLSRISQ 277
Query: 122 RACALAFKNGL-LPGGLNSKLTRKPARSMGEMRARASTYI-LDEEDEAFKRKRAKLEKGD 179
++ A + GL L ++ + RA+ ++ +++E E+F ++ + +
Sbjct: 278 QSALSALRKGLWYDSRFKEDLILHKLDTIQDALFRANNWMEVEDEKESFAKRDKQAKPAV 337
Query: 180 TSPKRVKKDRSGEDKGDGK-----------QQRPGKGKS 207
T P KK E++G K +Q GKG+S
Sbjct: 338 TFPP--KKFEPRENQGPRKFGLLPFNNNVGKQFQGKGRS 374
>At4g03770 hypothetical protein
Length = 464
Score = 71.2 bits (173), Expect = 1e-12
Identities = 52/195 (26%), Positives = 92/195 (46%), Gaps = 12/195 (6%)
Query: 8 LVLDSYSGDSDPKDHLLYFNTKMVIIAAS-------DAVKCRMFPSTFKSTAMAWFTTLP 60
L ++ ++G SDPK HL F ++ +A + DA C +F K A+ WFT L
Sbjct: 234 LRIEYFNGSSDPKGHLKLF---IISVARAKFRPEERDAGLCHLFVEHLKGPALNWFTRLK 290
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
S+ +F++ S+ FL Q+S + + DL+++ QQ E L++++A++ + KVE
Sbjct: 291 GNSVDSFQELSTLFLKQYSVLIDPSTSDADLWSLSQQPNEPLRDFLAKFRSTLAKVEGIN 350
Query: 121 PRACALAFKNGL-LPGGLNSK-LTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKG 178
A K L L L++K L R+ + A ++ + ++A
Sbjct: 351 DLAALSTLKKALCLRARLSAKFLAREIGGGLTIKDLEAEKGKTEQVNAVANPEQAAPAAN 410
Query: 179 DTSPKRVKKDRSGED 193
PKR + +R +D
Sbjct: 411 SEGPKRGRGNREADD 425
>At1g37180 hypothetical protein
Length = 661
Score = 66.6 bits (161), Expect = 3e-11
Identities = 36/126 (28%), Positives = 56/126 (43%), Gaps = 4/126 (3%)
Query: 10 LDSYSGDSDPKDHLLYFNTKMVIIAAS----DAVKCRMFPSTFKSTAMAWFTTLPRGSIS 65
L Y+G DP +HL F + + DA C++F A+ WFT L GSI
Sbjct: 316 LPVYNGKGDPNEHLTSFQVIVRRVPLEPYEEDAGLCKLFSENLSGPALTWFTQLEEGSID 375
Query: 66 NFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACA 125
NF+ S+ F+ Q+ +T L+N+ Q + L+ Y+ + V++
Sbjct: 376 NFKQLSTAFIKQYGYFIKSDITEAHLWNLSQSADDPLRTYIIVFKEIMVQIPSLSDSTAQ 435
Query: 126 LAFKNG 131
A KNG
Sbjct: 436 FALKNG 441
Score = 34.7 bits (78), Expect = 0.11
Identities = 34/141 (24%), Positives = 55/141 (38%), Gaps = 32/141 (22%)
Query: 264 PEAPKYQPRDAN----PKKW-------CEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNR 312
P P + P+ N KW C+ H+ GH T DC + + +L+ A Y
Sbjct: 458 PSKPPFSPKGKNGAFPSNKWVQDLNAYCDIHKMNGHATKDC----KALGRLLAAKYASGE 513
Query: 313 QGQW-----RNGGDQNKAHKREEERADTKGKKKQESAAIATKGADDTFARHSGPPVGTIN 367
++ N+ + EE +K K+K++ A + KG P +
Sbjct: 514 ISEFDITPIELAQTANETLESEEASPPSK-KQKRDPALVIPKG-----------PKKMVK 561
Query: 368 TIAGGFGGGGDTHAARKRHVR 388
I GG D+ +A K+H R
Sbjct: 562 VIMGGSKLFRDSISAIKQHER 582
>At3g31520 hypothetical protein
Length = 528
Score = 65.5 bits (158), Expect = 6e-11
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 8 LVLDSYSGDSDPKDHLLYFNTKMVIIAAS-------DAVKCRMFPSTFKSTAMAWFTTLP 60
L ++ ++G SDPK HL F ++ +A + DA C +F K A+ WF+ L
Sbjct: 242 LRIEYFNGSSDPKRHLKSF---IISVARTKFRPEERDAGLCHLFVEHLKGPALCWFSRLE 298
Query: 61 RGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
S+ +F++ S+ FL Q+S + + DL+++ QQ E L++++A+ + KVE
Sbjct: 299 GNSMDSFQELSTLFLKQYSVLIDLGTSDADLWSLSQQPNEPLRDFLAKLRSTLAKVEGIN 358
Query: 121 PRACALAFKNGL 132
A A K L
Sbjct: 359 DVAALSALKKAL 370
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 60.1 bits (144), Expect = 2e-09
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 10 LDSYSGDSDPKDHLLYFNTKMVIIAA--------SDAVKCRMFPSTFKSTAMAWFTTLPR 61
L Y+G D K+HL F +IA DA C++F A+ WFT L
Sbjct: 175 LPVYNGKGDLKEHLTSFQ----VIAGRVPLEPHEEDAGLCKLFSENLFGLALTWFTQLEE 230
Query: 62 GSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMAR 108
GSI NF+ S+ F+ Q+ N +T L+N Q E L+ Y+ R
Sbjct: 231 GSIDNFKQLSTAFIKQYEYFINSDITEAHLWNFSQSADEPLRTYIYR 277
>At1g41780 hypothetical protein
Length = 246
Score = 60.1 bits (144), Expect = 2e-09
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 8 LVLDSYSGDSDPKDHLLYFNTKMVIIA----ASDAVKCRMFPSTFKSTAMAWFTTLPRGS 63
L ++ +SG SDPK HL F + SDA C +F K + WF+ L S
Sbjct: 141 LRIEYFSGSSDPKGHLKSFKISVARAKFKPEESDAGLCHLFVEHLKGPVLDWFSRLEGNS 200
Query: 64 ISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 109
+ +F++ S+ FL Q+S + + DL+++ QQ E L +++ ++
Sbjct: 201 VDSFQELSTLFLKQYSVLIDPGTSDVDLWSLSQQPNEPLSDFLTKF 246
>At2g12870 putative retroelement pol polyprotein
Length = 411
Score = 59.7 bits (143), Expect = 3e-09
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 8 LVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK--------CRMFPSTFKSTAMAWFTTL 59
L +D ++G S PK HL F +I AA D K C +F K + F L
Sbjct: 77 LRIDYFNGSSYPKGHLKSF----IIYAARDKFKPEERDAGLCHLFVEHLKGPVLVLFLRL 132
Query: 60 PRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDE 119
+ +F + S+ FL QFS + +DL+++ QQ E L + + ++ + VE
Sbjct: 133 EGNFVDSFEELSTLFLKQFSVLIDPGTLDSDLWSLSQQPNEPLMDLLTKFRSTLASVEGI 192
Query: 120 EPRACALAFKNGL-LPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKR 172
A A K L +L +++ + RAS Y+ EE+ KR
Sbjct: 193 IDVAALSALKEALWYKSEFRKELNLSKPQTICDALHRASDYVSHEEEMELLSKR 246
Score = 33.1 bits (74), Expect = 0.31
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 349 KGADDTFARHSGPPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFGFVHPD--IT 406
+G + + S G I TI G DT + ++A +S + F PD +T
Sbjct: 307 RGNREAYDDESEAARGRIFTILGDSVFCHDTTTS----IKAYHSNRNLTRPFNGPDDKVT 362
Query: 407 ISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
++ + +DP+V+ L + +FNV RVL+D
Sbjct: 363 FHESNINCLDQPHNDPLVITLTIGAFNVERVLVD 396
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 56.2 bits (134), Expect = 3e-08
Identities = 73/347 (21%), Positives = 127/347 (36%), Gaps = 72/347 (20%)
Query: 4 NMKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASD----AVKCRMFPSTFKSTAMAWFTTL 59
++ + L +Y G DP+ L + + SD A C++F A+ WF+ L
Sbjct: 249 HISKIKLANYEGLVDPRPFLTSVSIAIGRAHFSDEDRDAGSCQLFVKHLSGAALTWFSRL 308
Query: 60 PRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDE 119
SI + ++ FL + + + DL+ + Q ESL+ ++ R+ V
Sbjct: 309 EANSIDSVHALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLRSFIGRFKEIVTSVATP 368
Query: 120 EPRACALAFKNGLLPGGLNSKLTR-KPARSMGEMRARASTYILDEEDEAFKRKRAKLEKG 178
+ A A A +N L G + T KP G +A + + K ++G
Sbjct: 369 DDAAIA-ALRNALWHGDSSRCTTLCKPFHRQGSAKAPIA--------------KEKPKEG 413
Query: 179 DTSPKRVKKDRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQRE 238
+ R D K+++ KG S + PR D +PW +
Sbjct: 414 H------HESRQHYDADYAKEEKLKKGTSYYVGDTA---PRSD-----KPWNKWNRSADA 459
Query: 239 ETDMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKWCEFHRSAGHDTDDCWTLQR 298
+ D +K+ EFH+ GH TD+C LQ
Sbjct: 460 KGD-----------------------------------QKYYEFHKIPGHSTDECRQLQT 484
Query: 299 EIDKLIRAGYQGNRQGQWRNG-GDQNKAHKREE--ERADTKGKKKQE 342
+ + G + R G D++ H+R E +R + K++Q+
Sbjct: 485 LLLTKFKKGDLDIEPDRRRTGTNDRDNTHRRVENTDRDNQDDKRRQD 531
>At3g30655 hypothetical protein, 3' partial
Length = 660
Score = 50.8 bits (120), Expect = 1e-06
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 18 DPKDHL-----LYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSS 72
DP DHL LY TK+ ++ D K R+FP + A W TLP+ SI+ + D
Sbjct: 61 DPLDHLDEFERLYGLTKINGVS-EDGFKLRLFPFSLGDKAHLWEKTLPQNSITAWDDCKK 119
Query: 73 KFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVK 115
FL +F +N N++ Q++ ES E R+ K
Sbjct: 120 AFLAKFFSNSRTARLRNEISGFTQKQNESFGEAWERFKGYQTK 162
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 18 DPKDHLLYFNTKMVII----AASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 73
DP DHL F+ + + D K R+FP + A W +LP+GSI+++ D
Sbjct: 61 DPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKA 120
Query: 74 FLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE 120
FL +F +N ND+ Q E+ E R+ + E
Sbjct: 121 FLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKGYQTQCPHHE 167
>At4g08050
Length = 1428
Score = 49.7 bits (117), Expect = 3e-06
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 18 DPKDHLLYF----NTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 73
DP DHL F N + + D K R+FP + A W L SI+ + D+
Sbjct: 61 DPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWDDYKKA 120
Query: 74 FLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 109
FL +F +N N++Y Q+ GES E R+
Sbjct: 121 FLSKFFSNARTARLRNEIYGFSQKTGESFCEAWERF 156
>At3g09620 putative RNA helicase
Length = 989
Score = 49.7 bits (117), Expect = 3e-06
Identities = 62/228 (27%), Positives = 96/228 (41%), Gaps = 36/228 (15%)
Query: 147 RSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTSPKRVKKD--RSGEDKGDGKQQRPGK 204
R EMR+R D E+E R R + D + ++D R GEDKG G+++R
Sbjct: 26 RDTTEMRSRVKR--CDSEEEERIRIRRDRKSSDFEEEEYERDSKRRGEDKGRGRRERDRD 83
Query: 205 GKSVFKPTKEQLYPRRDDYEQRRPWQSKSHRQR----EETDMV------MNTDVS----- 249
K +E RR+ +++ + K R R EE+D V T+ S
Sbjct: 84 RGKYLKRDRE----RREREKEKGRKKQKKERSREDCNEESDDVKCGLKRKRTERSRHGDD 139
Query: 250 DMLRGASDANLVDEPE--APKYQPRDANPKKWCEFHR--------SAGHDTDDCWTLQRE 299
D+ + D + DE + A + + R ++W E R S G +T WTL E
Sbjct: 140 DVEKKTRDEQVEDEQKQLAEEVEKRRRRVQEWQELKRQNEEAQIESKGPETGKAWTLDGE 199
Query: 300 IDKLIRAGYQ--GNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAA 345
D +++ + +R + NGGD K E E A T + + AA
Sbjct: 200 SDDEVKSDSEMDVDRDTKLENGGDA-KMVASENETAVTVSENGGDRAA 246
>At1g41690 hypothetical protein
Length = 371
Score = 48.9 bits (115), Expect = 6e-06
Identities = 30/102 (29%), Positives = 44/102 (42%), Gaps = 4/102 (3%)
Query: 18 DPKDHLLYFNTKMVII----AASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 73
DP DHL F + + D K R+FP + A W TLP+GSI+ + D
Sbjct: 61 DPLDHLDEFERLCSLTKINGVSEDGFKLRLFPFSLGDKAHLWEKTLPQGSITTWDDCKKA 120
Query: 74 FLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVK 115
FL +F + N++ Q++ ES E R+ K
Sbjct: 121 FLAKFFSYSRTARLRNEISGFTQKQSESFCEAWERFKGYQTK 162
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 47.8 bits (112), Expect = 1e-05
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 29/219 (13%)
Query: 245 NTDVSDMLRGASDANLVDEPEAPKYQPRDANPK----KWCEFHRSAGHDTDDCWTLQR-- 298
NTD L S A D + P +A + ++C+FH+ +GH T C LQ
Sbjct: 153 NTDPQQFLSSFSVATQRDH-----FHPSEAEVENRLDQYCDFHKRSGHSTAACRHLQSIL 207
Query: 299 -------EIDKLIRAGYQGNRQGQWRNGGDQNKA------HKREEERADTKGKKKQESAA 345
+I+ R N R G D N H ++ A ++++
Sbjct: 208 LNKYKKGDIEVQHRQYKSHNNTYAARGGRDGNNVFHRLGPHTGRQQEAPPANEEERHPDM 267
Query: 346 IATKGADDTFARHSGPPVGT--INTIAGGFGGGGDTHAARKRHVR--AVNSVHEVAFGFV 401
K + +H+ PV +N I GG D+ + K +++ A A +
Sbjct: 268 EPPKKNRENDQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKEM 327
Query: 402 HPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
P +T + D G+ +DP+V++L + V R+L+D
Sbjct: 328 TP-LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILID 365
>At2g07480 F9A16.15
Length = 1012
Score = 47.8 bits (112), Expect = 1e-05
Identities = 61/278 (21%), Positives = 102/278 (35%), Gaps = 30/278 (10%)
Query: 18 DPKDHLLYFNTKMVII----AASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 73
DP DHL F+ + + ++ K R+FP + A W TLP SI + D
Sbjct: 56 DPLDHLDNFDRLCSLTKINGVSEESFKLRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKA 115
Query: 74 FLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEE---PRACALAFK- 129
FL +F +N + +++ Q+ ES E R+ + + E P+ L
Sbjct: 116 FLAKFFSNSRKARLRSEISGFNQKNSESFSEAWERFKGYTTQCPHHESLPPQYSILRCLP 175
Query: 130 --NGLLPGGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTSPKRVKK 187
LL N + K E+ + + ++ + R + D K +K
Sbjct: 176 KIRMLLDTASNGNILNKDVAEGWELVENLAQSHRNYNEDYDRTNRGSSDSEDKHKKEIKT 235
Query: 188 DRSGEDKGDGKQQRPGKGKSVFKPTKEQLYPRRD---------DYEQRRPWQSKSHRQRE 238
DK QQR +V+ T+E+L +D Y Q + +K +
Sbjct: 236 LNDRIDKLVLAQQR-----NVYYITEEELTQLQDGENLTIEEVSYLQNQGGYNKGFNNYK 290
Query: 239 ETDMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANP 276
++ R + AN D+ P+ QP A P
Sbjct: 291 PPHPNLS------YRSNNVANPQDQVYPPQNQPTQAKP 322
>At4g20490 putative protein
Length = 853
Score = 46.6 bits (109), Expect = 3e-05
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 41 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGE 100
C++F A+ F+ L SI NF S+ FL Q+ + +DL+++ Q+ GE
Sbjct: 222 CQLFVEGLTGNALTCFSRLEANSIDNFTQLSTAFLKQYRVFIQPGASSSDLWSMTQENGE 281
Query: 101 SLKEYMARY 109
+L +Y+ R+
Sbjct: 282 TLNDYLGRF 290
Score = 42.4 bits (98), Expect = 5e-04
Identities = 43/173 (24%), Positives = 72/173 (40%), Gaps = 19/173 (10%)
Query: 287 GHDTDDCWTLQREIDKL----IRAGYQG-NRQGQWRNGGDQNKA---HKR---------E 329
GH T++C L + K + A Y N + + ++G Q++A H+ E
Sbjct: 326 GHSTEECKHLLNILGKYKSGEVEAVYHPKNGKNKRKSGSKQSQAGPTHEEQHVDHRLLLE 385
Query: 330 EERADTKGKKKQESAAIATKGADDTFARHSGPPVGTINTIAGGFGGGGDTHAARKRHVRA 389
++R + + E + R P G I+ I G D+ +A K+ R
Sbjct: 386 DDRVEEARVPENELPGPPKRWRGQQPQRAPDHPRGRISMIMAGLSDDEDSVSALKKRARQ 445
Query: 390 VNSVHEV--AFGFVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLD 440
V SV A I + D GI+ +D +V++L M F+V R+L+D
Sbjct: 446 VCSVRVAPEAEPLSQEPIIFTSEDASGIQHPHNDALVIKLVMEDFDVERILID 498
>At4g07640 putative athila transposon protein
Length = 866
Score = 46.6 bits (109), Expect = 3e-05
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 18 DPKDHLLYF----NTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 73
DP DHL F N + ++D K R+FP + A W LP SI + D
Sbjct: 61 DPLDHLDEFDRLCNLTKINGVSADGFKLRLFPFSLGDKAHIWEKNLPHDSIITWDDCKKA 120
Query: 74 FLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 109
FL +F +N N++ Q+ GES E R+
Sbjct: 121 FLSKFFSNARTARLRNEISGFSQKTGESFCEAWERF 156
>At2g10670 pseudogene
Length = 929
Score = 45.1 bits (105), Expect = 8e-05
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 18 DPKDHL-----LYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSS 72
DP DHL L TK+ ++ D K R+FP + A W TLP+ SI+ + D
Sbjct: 93 DPLDHLDELERLCGLTKINGVS-EDGFKLRLFPFSLGDKAHLWEKTLPKNSITTWDDCKM 151
Query: 73 KFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARYSAASVK 115
FL +F +N N++ ++ ES E R+ K
Sbjct: 152 AFLAKFFSNSRTARLRNEISGFTLKQNESFCEAWERFKGYQTK 194
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,680,445
Number of Sequences: 26719
Number of extensions: 496394
Number of successful extensions: 2161
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1948
Number of HSP's gapped (non-prelim): 214
length of query: 441
length of database: 11,318,596
effective HSP length: 102
effective length of query: 339
effective length of database: 8,593,258
effective search space: 2913114462
effective search space used: 2913114462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0590c.5